******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm8-HLH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:5859204-5859324 1.0000 120 chrX:4563096-4563216 1.0000 120 chr3R:8682138-8682258 1.0000 120 chr3L:47960-48080 1.0000 120 chr3L:14979408-14979528 1.0000 120 chr3R:11350991-11351111 1.0000 120 chr2R:14429547-14429667 1.0000 120 chr2R:8245235-8245355 1.0000 120 chr3R:25999080-25999200 1.0000 120 chr2R:23886706-23886826 1.0000 120 chr3R:25629551-25629671 1.0000 120 chr3R:30474837-30474957 1.0000 120 chr3R:25596491-25596611 1.0000 120 chrX:19842399-19842519 1.0000 120 chr2R:18670341-18670461 1.0000 120 chr2R:25198569-25198689 1.0000 120 chr3R:18993823-18993943 1.0000 120 chr3L:1431369-1431489 1.0000 120 chr2L:15427083-15427203 1.0000 120 chr2R:13194982-13195102 1.0000 120 chr3R:29266853-29266973 1.0000 120 chr2L:9454512-9454632 1.0000 120 chr2R:16278691-16278811 1.0000 120 chr3R:16528418-16528538 1.0000 120 chr3R:26025448-26025568 1.0000 120 chr2L:10553810-10553930 1.0000 120 chr3L:16049229-16049349 1.0000 120 chr2L:19037188-19037308 1.0000 120 chr3L:1360220-1360340 1.0000 120 chr3L:2853059-2853179 1.0000 120 chr2L:17222279-17222399 1.0000 120 chr3R:26009895-26010015 1.0000 120 chr3L:3980182-3980302 1.0000 120 chr2L:12457815-12457935 1.0000 120 chr2L:15327185-15327305 1.0000 120 chr2R:20600793-20600913 1.0000 120 chr3R:30476509-30476629 1.0000 120 chr2L:9989701-9989821 1.0000 120 chr2L:9989941-9990061 1.0000 120 chr2R:22408454-22408574 1.0000 120 chr3L:297203-297323 1.0000 120 chr2R:18672256-18672376 1.0000 120 chr3R:26040032-26040152 1.0000 120 chr3R:21640532-21640652 1.0000 120 chr2L:12622080-12622200 1.0000 120 chr3L:15847309-15847429 1.0000 120 chr3R:16552401-16552521 1.0000 120 chr3L:13135043-13135163 1.0000 120 chr2R:9694785-9694905 1.0000 120 chr3R:10284275-10284395 1.0000 120 chr2L:17264250-17264370 1.0000 120 chr3R:26032624-26032744 1.0000 120 chr3L:899306-899426 1.0000 120 chr2L:15457611-15457731 1.0000 120 chr3L:17463584-17463704 1.0000 120 chr2R:17476198-17476318 1.0000 120 chr3R:9024950-9025070 1.0000 120 chr2R:20838658-20838778 1.0000 120 chr3L:5982015-5982135 1.0000 120 chr3R:26032398-26032518 1.0000 120 chrX:7574033-7574153 1.0000 120 chr3R:19319258-19319378 1.0000 120 chr3R:26027992-26028112 1.0000 120 chr2L:15470876-15470996 1.0000 120 chr2L:15741485-15741605 1.0000 120 chr3R:29309403-29309523 1.0000 120 chrX:457147-457267 1.0000 120 chr2R:18674825-18674945 1.0000 120 chr3R:25999408-25999528 1.0000 120 chr2L:15425784-15425904 1.0000 120 chr2L:6204260-6204380 1.0000 120 chr3R:26034953-26035073 1.0000 120 chr2L:18775420-18775540 1.0000 120 chr3R:31606533-31606653 1.0000 120 chr2R:13567711-13567831 1.0000 120 chr2R:12970806-12970926 1.0000 120 chr3R:26002603-26002723 1.0000 120 chr2L:6234055-6234175 1.0000 120 chr2L:7624325-7624445 1.0000 120 chr2R:11794176-11794296 1.0000 120 chr2R:12776163-12776283 1.0000 120 chr3L:5653699-5653819 1.0000 120 chr3R:17814652-17814772 1.0000 120 chr2R:18666232-18666352 1.0000 120 chr3R:9027193-9027313 1.0000 120 chr3R:26039363-26039483 1.0000 120 chr3R:18234888-18235008 1.0000 120 chr3R:29310454-29310574 1.0000 120 chr2L:15442002-15442122 1.0000 120 chr3R:19995589-19995709 1.0000 120 chr3R:9024149-9024269 1.0000 120 chr2R:13563675-13563795 1.0000 120 chr3R:26030616-26030736 1.0000 120 chr2R:24276990-24277110 1.0000 120 chr3R:25636745-25636865 1.0000 120 chrX:451216-451336 1.0000 120 chr2R:11398104-11398224 1.0000 120 chr2L:17740681-17740801 1.0000 120 chr2R:13569701-13569821 1.0000 120 chr3R:21644328-21644448 1.0000 120 chr3R:19344080-19344200 1.0000 120 chr2L:10608811-10608931 1.0000 120 chr3L:6104718-6104838 1.0000 120 chrX:19842600-19842720 1.0000 120 chr2R:11401103-11401223 1.0000 120 chr2R:20846160-20846280 1.0000 120 chr2L:12661519-12661639 1.0000 120 chr2R:13042726-13042846 1.0000 120 chr3L:321592-321712 1.0000 120 chr2R:7417080-7417200 1.0000 120 chr3L:15746378-15746498 1.0000 120 chr3L:20789442-20789562 1.0000 120 chr3R:14597442-14597562 1.0000 120 chr3R:29269132-29269252 1.0000 120 chr2R:25212956-25213076 1.0000 120 chr2R:10537588-10537708 1.0000 120 chr2R:6595892-6596012 1.0000 120 chr2R:13570874-13570994 1.0000 120 chr2L:14265180-14265300 1.0000 120 chr3R:26035159-26035279 1.0000 120 chr2R:10551856-10551976 1.0000 120 chr2L:9592869-9592989 1.0000 120 chr2L:4352030-4352150 1.0000 120 chr3L:15662619-15662739 1.0000 120 chr2L:17564714-17564834 1.0000 120 chr2R:12777301-12777421 1.0000 120 chr2L:7641012-7641132 1.0000 120 chr3R:22780534-22780654 1.0000 120 chr2L:4368091-4368211 1.0000 120 chr3R:16389306-16389426 1.0000 120 chrX:460644-460764 1.0000 120 chr3L:13863539-13863659 1.0000 120 chr3L:16764446-16764566 1.0000 120 chr3R:10355090-10355210 1.0000 120 chr2R:7998323-7998443 1.0000 120 chr3R:8690319-8690439 1.0000 120 chr2R:10844223-10844343 1.0000 120 chr2R:13564634-13564754 1.0000 120 chr3R:11378664-11378784 1.0000 120 chr2L:4363803-4363923 1.0000 120 chr3L:13154169-13154289 1.0000 120 chr3R:26026790-26026910 1.0000 120 chr2L:12633298-12633418 1.0000 120 chr2L:18919634-18919754 1.0000 120 chr3L:21066582-21066702 1.0000 120 chr3R:19371127-19371247 1.0000 120 chr2L:20995863-20995983 1.0000 120 chr2R:20844360-20844480 1.0000 120 chr2R:13569906-13570026 1.0000 120 chr2L:5903013-5903133 1.0000 120 chr2R:23573135-23573255 1.0000 120 chr2L:19037388-19037508 1.0000 120 chr3R:15587615-15587735 1.0000 120 chr3L:18268264-18268384 1.0000 120 chr3L:12090313-12090433 1.0000 120 chr2R:20859867-20859987 1.0000 120 chr2R:9714682-9714802 1.0000 120 chr2R:13188031-13188151 1.0000 120 chr3L:676035-676155 1.0000 120 chr2L:1670599-1670719 1.0000 120 chr2R:24882656-24882776 1.0000 120 chr3R:19931315-19931435 1.0000 120 chr3R:31704942-31705062 1.0000 120 chrX:7801172-7801292 1.0000 120 chr2R:8802067-8802187 1.0000 120 chr2R:14433393-14433513 1.0000 120 chr2L:5469544-5469664 1.0000 120 chr3L:18229427-18229547 1.0000 120 chr2L:15478354-15478474 1.0000 120 chr2R:25204997-25205117 1.0000 120 chrX:9729100-9729220 1.0000 120 chr2L:9988718-9988838 1.0000 120 chr2L:6240998-6241118 1.0000 120 chr3R:26024795-26024915 1.0000 120 chrX:825052-825172 1.0000 120 chr3L:16025144-16025264 1.0000 120 chr3L:3845862-3845982 1.0000 120 chr2R:13196262-13196382 1.0000 120 chr2R:8235746-8235866 1.0000 120 chr2L:12623205-12623325 1.0000 120 chr3R:6674680-6674800 1.0000 120 chrX:3832350-3832470 1.0000 120 chr2R:20602682-20602802 1.0000 120 chr2L:17743093-17743213 1.0000 120 chr3R:8171346-8171466 1.0000 120 chr2L:17263458-17263578 1.0000 120 chr2R:14431110-14431230 1.0000 120 chr3R:21825283-21825403 1.0000 120 chr3L:19899393-19899513 1.0000 120 chr3R:26010707-26010827 1.0000 120 chr2L:3555830-3555950 1.0000 120 chr2L:12549080-12549200 1.0000 120 chr3R:8924174-8924294 1.0000 120 chr3R:30762358-30762478 1.0000 120 chr3L:905193-905313 1.0000 120 chr2L:11470119-11470239 1.0000 120 chr3L:16047209-16047329 1.0000 120 chr2R:19870814-19870934 1.0000 120 chr2L:22037044-22037164 1.0000 120 chr3R:8920272-8920392 1.0000 120 chr3L:6106869-6106989 1.0000 120 chrX:2987387-2987507 1.0000 120 chr3L:3976587-3976707 1.0000 120 chr3R:17605211-17605331 1.0000 120 chr2R:17476400-17476520 1.0000 120 chr3R:5109999-5110119 1.0000 120 chr3L:17937447-17937567 1.0000 120 chr3L:18224742-18224862 1.0000 120 chr2L:17262418-17262538 1.0000 120 chr2L:20204763-20204883 1.0000 120 chr3L:17653236-17653356 1.0000 120 chr3L:15031865-15031985 1.0000 120 chr2R:24280469-24280589 1.0000 120 chr3R:4996650-4996770 1.0000 120 chr3L:17033442-17033562 1.0000 120 chr3R:8277934-8278054 1.0000 120 chr3L:18296623-18296743 1.0000 120 chr3R:24270200-24270320 1.0000 120 chr3L:12506199-12506319 1.0000 120 chr2L:15324215-15324335 1.0000 120 chr3L:1431576-1431696 1.0000 120 chr2R:24275505-24275625 1.0000 120 chr3L:782608-782728 1.0000 120 chr3R:22886876-22886996 1.0000 120 chr3R:6765032-6765152 1.0000 120 chr2L:13878848-13878968 1.0000 120 chr3R:16229044-16229164 1.0000 120 chr2L:15319923-15320043 1.0000 120 chr3L:14119030-14119150 1.0000 120 chr2L:8857852-8857972 1.0000 120 chr3R:19108268-19108388 1.0000 120 chr2L:21789637-21789757 1.0000 120 chr3R:26028193-26028313 1.0000 120 chr2R:6586008-6586128 1.0000 120 chr3L:15672934-15673054 1.0000 120 chr2R:21712342-21712462 1.0000 120 chrX:457996-458116 1.0000 120 chr3R:26002803-26002923 1.0000 120 chr2L:11338378-11338498 1.0000 120 chr2L:2461537-2461657 1.0000 120 chr3R:11368740-11368860 1.0000 120 chr3L:20295135-20295255 1.0000 120 chr3L:908741-908861 1.0000 120 chr2R:6573430-6573550 1.0000 120 chr3L:18102179-18102299 1.0000 120 chr3R:26023401-26023521 1.0000 120 chr3R:15584718-15584838 1.0000 120 chr3R:30475040-30475160 1.0000 120 chr2R:18202740-18202860 1.0000 120 chr2R:13561069-13561189 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Esplm8-HLH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm8-HLH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.255 C 0.245 G 0.251 T 0.249 Background letter frequencies (from file dataset with add-one prior applied): A 0.255 C 0.245 G 0.251 T 0.249 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCASCTGY MEME-1 width = 8 sites = 135 llr = 979 E-value = 5.8e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:a:2::: pos.-specific C 1a:36::6 probability G 5::52:a: matrix T 1::2:a:4 bits 2.0 ** * 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 ** *** (10.5 bits) 0.8 ** *** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13878848-13878968 13 1.48e-05 GATTACCTTT GCAGCTGC TAACAGCACG chr2R:14433393-14433513 1 1.48e-05 . GCAGCTGC TCCaaaaaca chr2R:24882656-24882776 2 1.48e-05 G GCAGCTGC ATTCTTTCTC chr2L:20995863-20995983 49 1.48e-05 CTGCACAGTG GCAGCTGC AACTGCTGAA chr2L:7641012-7641132 76 1.48e-05 AGAATAAATA GCAGCTGC GCCTGCGCGA chr3R:14597442-14597562 88 1.48e-05 AAAACCCCGG GCAGCTGC TATCCCaaaa chrX:451216-451336 27 1.48e-05 AGGAAAAGGA GCAGCTGC CTCGATCGAG chr2R:11794176-11794296 9 1.48e-05 GAGCCGCT GCAGCTGC TGCCTGAAAA chr3R:31606533-31606653 55 1.48e-05 AGATCTTGCA GCAGCTGC ATTGGCATGT chr2R:18672256-18672376 23 1.48e-05 GTTCAGTCCT GCAGCTGC AAAGATTACC chr2R:22408454-22408574 60 1.48e-05 GGAGCTCACT GCAGCTGC AACGCGGCGC chr3L:16049229-16049349 16 1.48e-05 ACGTGTGCCG GCAGCTGC AGCAACTAGG chrX:19842399-19842519 59 1.48e-05 GTCCTTAAAT GCAGCTGC CGCCGTCTGT chr3R:25596491-25596611 35 1.48e-05 CCATAAAACA GCAGCTGC TAGCTGGCGC chr3R:25629551-25629671 113 1.48e-05 CGAGGTCGGA GCAGCTGC chr3L:47960-48080 24 1.48e-05 GGAACAGGCT GCAGCTGC CATCTGATCC chr3L:17653236-17653356 59 2.98e-05 GAGCGCGTGG ACAGCTGC CAAGCAGCAG chr2R:8235746-8235866 110 2.98e-05 CTGATGCGAA ACAGCTGC TCA chr2R:13188031-13188151 58 2.98e-05 CGCTGAGGGA ACAGCTGC AACTTTTCGA chr2R:13569906-13570026 39 2.98e-05 ACATTTTCCC ACAGCTGC AGTGGTTGCA chr3R:10355090-10355210 4 2.98e-05 CCA ACAGCTGC TGAAGATTGC chr2L:17740681-17740801 110 2.98e-05 AATTTTTCCA ACAGCTGC GCA chr3R:26032398-26032518 66 2.98e-05 TAAATTGCAA ACAGCTGC CACTCGAACC chr2R:20600793-20600913 24 2.98e-05 ATAATGAGCG ACAGCTGC TTCAACTTCG chr3L:3980182-3980302 71 2.98e-05 TTCTACAGCT ACAGCTGC CGTCGACGTC chr2R:25198569-25198689 76 2.98e-05 TTTTTTAGAA ACAGCTGC CATGCGACTG chr2R:8245235-8245355 110 2.98e-05 TCTGCTTCGA ACAGCTGC TCT chr2R:14429547-14429667 48 2.98e-05 CGCATGCGCG ACAGCTGC GCCGAGAAAT chr3L:5859204-5859324 30 2.98e-05 GCCAGAGAAA ACAGCTGC CACCAAACAA chr2R:20602682-20602802 5 5.92e-05 AGAA GCAGCTGT CCCAGCAGCC chr3R:19931315-19931435 60 5.92e-05 AAGCGCAGGC GCAGCTGT TCCGATTCGC chr3L:676035-676155 15 5.92e-05 CACTGTGGTC GCACCTGC AATCCGCTGG chrX:19842600-19842720 23 5.92e-05 AACGAAGGTT GCACCTGC CACTGAGCTC chr3R:19344080-19344200 74 5.92e-05 TCCTCCGCAG GCAGCTGT CACTGGCAAT chr2R:24276990-24277110 32 5.92e-05 CCTTGGCTCG GCAGCTGT TGCGATTGCG chr3R:25999408-25999528 68 5.92e-05 TCTAGAAACG GCAGCTGT TCGCTCTGCA chr3R:9024950-9025070 64 5.92e-05 GCGGCATGTG GCAGCTGT CCTTTTTCCC chr2R:17476198-17476318 23 5.92e-05 AAAAATTGTT GCAGCTGT TTGAGTTGCG chr3R:26040032-26040152 55 5.92e-05 CTACGAAGTT GCAGCTGT TCCTTGTGAA chr2L:12457815-12457935 6 5.92e-05 ctgct gcacctgc tgctccaccg chr3R:30474837-30474957 52 5.92e-05 ACGTGCGAGG GCAGCTGT TGCACGCACC chr3L:908741-908861 57 1.04e-04 TACCGAAACA ACAGCTGT CGCACATTGA chr2R:24275505-24275625 100 1.04e-04 AACAGCCGGA ACAGCTGT TCCATCTGCA chr3L:12506199-12506319 30 1.04e-04 TGCATCTGCC GCAGGTGC GACTCCAGCA chrX:2987387-2987507 39 1.04e-04 GTGCCCAGGC GCAGGTGC ACTGATTACC chr3R:8171346-8171466 57 1.04e-04 CGGCGCTGTT ACACCTGC TCCAAAATTG chr3R:21644328-21644448 7 1.04e-04 AGTGTA ACAGCTGT CACTATTATT chr3R:26030616-26030736 27 1.04e-04 CGCGATGTGC ACACCTGC CATTTAAGAC chr2R:12776163-12776283 25 1.04e-04 GCCCGCAACG ACAGCTGT GAAGTCACAA chr3R:26002603-26002723 51 1.04e-04 CACGATCGAC ACACCTGC CCTTTTTtgt chr3L:15847309-15847429 39 1.04e-04 GGCTGCTGTT GCAGGTGC ACAAGTCAGC chr2R:13570874-13570994 53 1.19e-04 TTGTTCTCAC GCATCTGC CATCCAGATT chr2L:15457611-15457731 97 1.19e-04 TTCGACCAAT GCATCTGC ACAATTACGA chr3R:16528418-16528538 48 1.19e-04 ACTGGAAAAT GCATCTGC ATGTGCGGCA chr3R:26024795-26024915 21 1.33e-04 CGCTCCGCTC GCACCTGT TGAAGGTGCG chrX:4563096-4563216 83 1.33e-04 ATTCCTGGAT GCACCTGT TCGCCCGGCC chr2R:18674825-18674945 106 1.64e-04 GAATTGCAGC GCAGATGC AGCAGCT chr2R:13569701-13569821 69 1.79e-04 GTGATTCGTA ACATCTGC TGGTTCCCAG chr2L:15427083-15427203 52 1.79e-04 ATCTATTCCC ACATCTGC CGACTGTGAC chr3R:16229044-16229164 75 2.24e-04 TAGGCCGGCA GCACGTGC TAAGCACATT chr2L:5469544-5469664 58 2.24e-04 AGGGGGCGTG GCACGTGC ACCCAAGTGC chr3L:12090313-12090433 93 2.24e-04 tgttgCGTTG GCACGTGC GTCAAAAGCG chr2L:4368091-4368211 65 2.24e-04 AGGGAGCGTG GCAGGTGT CTGCTGCCAG chr3R:22780534-22780654 60 2.24e-04 TTTGCTTGCA GCACGTGC ACATGCGCCG chr3L:15662619-15662739 59 2.24e-04 TGGCCACGTT GCACGTGC CACGTGCCAA chr2R:7417080-7417200 50 2.24e-04 GGTCCGCACA GCAGGTGT CCGGCGGAGA chr3L:5653699-5653819 2 2.24e-04 G GCACGTGC CGAAATTAAT chr2L:15425784-15425904 95 2.24e-04 TAAAAAGCGA GCACGTGC CACAGGGACT chr3R:26027992-26028112 68 2.24e-04 CACTCAGCAC GCACGTGC AGGGCACAAA chr2L:2461537-2461657 73 2.69e-04 CAGCAGCCCT GCATCTGT GTGTTTTCCT chr3L:3976587-3976707 61 2.69e-04 GACCAAAACG CCAGCTGC TGCAAATGGC chr3R:30762358-30762478 70 2.69e-04 AGGACCTTTT CCAGCTGC TTTTCTTTTT chr3L:16025144-16025264 60 2.69e-04 agatacaaat acagatgc agatacTCAG chr2L:1670599-1670719 18 2.69e-04 TGACTGCAGC CCAGCTGC TGCTGCATCA chr3R:11378664-11378784 13 2.69e-04 AATCCGGGCC GCATCTGT CCGCCCCGAA chr2L:9592869-9592989 12 2.69e-04 CGAAGGTGTT CCAGCTGC CGATTCGATT chr2R:11401103-11401223 96 2.69e-04 TCCCTTTTGG CCAGCTGC CGCCGACGCC chr2L:9454512-9454632 113 2.69e-04 GTTTCAAACG ACAGATGC chr2R:23886706-23886826 11 2.69e-04 TGGTGCCTGG CCAGCTGC GGAGCGATCT chr3R:26028193-26028313 23 3.30e-04 ACACTTTGCA ACACGTGC AACACCACAG chr2L:8857852-8857972 82 3.30e-04 GCCAGTCGGA ACACGTGC GGGTCATTAG chr3L:14119030-14119150 82 3.30e-04 CCACACAGAT ACACGTGC CACACAGATA chr3L:15031865-15031985 40 3.30e-04 AAATTGTGTG GCACATGC AACAtgttgt chr2R:13196262-13196382 46 3.30e-04 AGACAGGACG GCAGATGT TCCTCTTCGC chr3L:21066582-21066702 65 3.30e-04 GCGACGTGTG GCAGATGT TTTTCCTTCT chr3L:20789442-20789562 99 3.30e-04 aggatgaggG GCACATGC TACACGCATG chr2R:20846160-20846280 67 3.30e-04 TCAACGCACG GCAGATGT GCGAGAGCTC chr2R:13567711-13567831 80 3.30e-04 TCATTTTAAA ACACGTGC CAGTTTCCTG chrX:457147-457267 61 3.30e-04 TGCAGCAGGA GCAGATGT TTTTCGCGGC chr2L:22037044-22037164 110 3.60e-04 GCCACACAAG ACATCTGT CCC chr2L:9988718-9988838 46 3.60e-04 TGTCTGCTCG ACATCTGT TTCGACCCTC chr2L:4363803-4363923 89 3.60e-04 CCAAGCGAAA ACATCTGT CGTCCTCAAA chr2R:25212956-25213076 39 3.60e-04 AGAAATCTCG GCATGTGC GCTGTATCGG chr3R:29310454-29310574 61 3.60e-04 GGGTGCATAG ACATCTGT AGGTTGCACG chr2R:18666232-18666352 65 3.60e-04 TCAGGTTGCG ACATCTGT TTGCTGTTAC chr3L:1360220-1360340 12 3.60e-04 GTCGACGAAA ACATCTGT TCCCCGGGCC chr2R:13561069-13561189 92 3.75e-04 TGATCGTGGA GCACGTGT GTGTTGACAT chrX:9729100-9729220 46 3.75e-04 GGCACGAGGG GCACGTGT CCGTGTGCGT chr2L:15478354-15478474 7 3.75e-04 ACACTC GCACGTGT GCGTCGCTAC chr3L:15746378-15746498 28 3.75e-04 TGAAGTTGGC GCACGTGT CCAACAAACG chr3R:26032624-26032744 79 3.75e-04 AGATTATCCT GCACGTGT TGAGCTTGCT chr3R:19319258-19319378 56 4.35e-04 TTAATAGTCG ACAGATGT TTGGTGCGGC chr3R:15584718-15584838 105 4.80e-04 GCACAGGATA TCAGCTGC TGCCGCAG chr2R:24280469-24280589 83 4.80e-04 CTGGCGGCCA TCAGCTGC CTCGCTGGCA chr2R:25204997-25205117 53 4.80e-04 AAGCCTACGA ACATGTGC ACAAGGACCC chr3R:29269132-29269252 20 4.80e-04 GATCGAGGTG GCATATGC GTTTCTTGGC chr2L:18775420-18775540 60 4.80e-04 ACAAATGAAA ACATGTGC GGTTGCCGCA chr3L:5982015-5982135 49 4.80e-04 CAAGATGAAG ACATGTGC AGTCGTTAGG chr2L:19037188-19037308 21 4.80e-04 TGCAGCGAAT GCATATGC ACATGTCAGG chr2R:8802067-8802187 31 5.11e-04 TGCGGGAGTT GCACATGT CAAGTGAAAA chr2L:9989941-9990061 49 5.11e-04 TTGAAATCAA ACACGTGT CCGCTTCTGC chr2L:12622080-12622200 66 5.71e-04 TTGGATCCTC ACATATGC CGCACCACTT chr3L:19899393-19899513 2 6.00e-04 T ACACATGT AAGAATGTAT chr2L:17264250-17264370 58 6.00e-04 TGGTATTTGA ACACATGT CAAGCTGTCA chr3L:2853059-2853179 102 6.00e-04 GCAGGCGCGC ACACATGT TGCAAGAACG chr2R:6573430-6573550 101 6.76e-04 CAATAAAACT GCATATGT GTACCGTTCT chr3L:18229427-18229547 108 6.76e-04 TTTGAAAACC TCAGCTGT GGGAC chr2R:12777301-12777421 74 6.76e-04 CCAACTTACC TCAGCTGT TGCAGCCGTT chr2R:9714682-9714802 36 7.05e-04 GTGCTGCCGT CCACGTGC CACAATCTGG chr3R:9027193-9027313 60 7.05e-04 TGTTGTCAGC CCACGTGC GTGTGTCAGA chr2L:17222279-17222399 103 7.05e-04 CGACGAGGGG CCACGTGC TGATTAATTC chr3L:1431576-1431696 46 7.50e-04 gtgtCAAAGG ACATATGT TAGGGACGGC chr2R:13564634-13564754 97 7.50e-04 GGAGAGTTGT ACATATGT ATGTGGAAGG chr3R:29309403-29309523 61 7.50e-04 GCACGAGCCA ACATATGT CCTGGAAACA chr3L:17463584-17463704 106 7.50e-04 TTTGGACCCT ACATATGT ACATATC chr2R:20859867-20859987 112 8.09e-04 GGGGACATTG CCACATGC G chr2L:10608811-10608931 68 8.09e-04 TTGCCGATTC CCAGATGT GTCCGGATTC chr3R:25636745-25636865 26 8.09e-04 CTGTGCCACT CCAGATGT GTCCGGACAT chr3L:13135043-13135163 73 8.09e-04 TGCAGTGTTT TCACCTGT CAACAATATT chr2R:11398104-11398224 98 8.39e-04 AAACCCTTTG CCATGTGC CGAGGGTAAA chr3L:18296623-18296743 1 8.84e-04 . TCACGTGC CTGCTGTTTA chr3L:297203-297323 81 8.84e-04 GGCTGATAGA TCACGTGC TCATACAAAC chr2R:7998323-7998443 46 9.43e-04 CCAATAAGAT GCAGCAGC AACCACCCCC chr2L:14265180-14265300 87 9.43e-04 CCGTAACTAG GCAGCAGC AACAATGGTC chr2L:10553810-10553930 55 1.09e-03 AGCGACATGA GCAGCAGT TGTAAGGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13878848-13878968 1.5e-05 12_[+1]_100 chr2R:14433393-14433513 1.5e-05 [+1]_112 chr2R:24882656-24882776 1.5e-05 1_[+1]_111 chr2L:20995863-20995983 1.5e-05 48_[+1]_64 chr2L:7641012-7641132 1.5e-05 75_[+1]_37 chr3R:14597442-14597562 1.5e-05 87_[+1]_25 chrX:451216-451336 1.5e-05 26_[+1]_86 chr2R:11794176-11794296 1.5e-05 8_[+1]_104 chr3R:31606533-31606653 1.5e-05 54_[+1]_58 chr2R:18672256-18672376 1.5e-05 22_[+1]_90 chr2R:22408454-22408574 1.5e-05 59_[+1]_53 chr3L:16049229-16049349 1.5e-05 15_[+1]_97 chrX:19842399-19842519 1.5e-05 58_[+1]_54 chr3R:25596491-25596611 1.5e-05 34_[+1]_78 chr3R:25629551-25629671 1.5e-05 112_[+1] chr3L:47960-48080 1.5e-05 23_[+1]_89 chr3L:17653236-17653356 3e-05 58_[+1]_54 chr2R:8235746-8235866 3e-05 109_[+1]_3 chr2R:13188031-13188151 3e-05 57_[+1]_55 chr2R:13569906-13570026 3e-05 38_[+1]_74 chr3R:10355090-10355210 3e-05 3_[+1]_109 chr2L:17740681-17740801 3e-05 109_[+1]_3 chr3R:26032398-26032518 3e-05 65_[+1]_47 chr2R:20600793-20600913 3e-05 23_[+1]_89 chr3L:3980182-3980302 3e-05 70_[+1]_42 chr2R:25198569-25198689 3e-05 75_[+1]_37 chr2R:8245235-8245355 3e-05 109_[+1]_3 chr2R:14429547-14429667 3e-05 47_[+1]_65 chr3L:5859204-5859324 3e-05 29_[+1]_83 chr2R:20602682-20602802 5.9e-05 4_[+1]_108 chr3R:19931315-19931435 5.9e-05 59_[+1]_53 chr3L:676035-676155 5.9e-05 14_[+1]_98 chrX:19842600-19842720 5.9e-05 22_[+1]_90 chr3R:19344080-19344200 5.9e-05 73_[+1]_39 chr2R:24276990-24277110 5.9e-05 31_[+1]_81 chr3R:25999408-25999528 5.9e-05 67_[+1]_45 chr3R:9024950-9025070 5.9e-05 63_[+1]_49 chr2R:17476198-17476318 5.9e-05 22_[+1]_90 chr3R:26040032-26040152 5.9e-05 54_[+1]_58 chr2L:12457815-12457935 5.9e-05 5_[+1]_107 chr3R:30474837-30474957 5.9e-05 51_[+1]_61 chr3L:908741-908861 0.0001 56_[+1]_56 chr2R:24275505-24275625 0.0001 99_[+1]_13 chr3L:12506199-12506319 0.0001 29_[+1]_83 chrX:2987387-2987507 0.0001 38_[+1]_74 chr3R:8171346-8171466 0.0001 56_[+1]_56 chr3R:21644328-21644448 0.0001 6_[+1]_106 chr3R:26030616-26030736 0.0001 26_[+1]_86 chr2R:12776163-12776283 0.0001 24_[+1]_88 chr3R:26002603-26002723 0.0001 50_[+1]_62 chr3L:15847309-15847429 0.0001 38_[+1]_74 chr2R:13570874-13570994 0.00012 52_[+1]_60 chr2L:15457611-15457731 0.00012 96_[+1]_16 chr3R:16528418-16528538 0.00012 47_[+1]_65 chr3R:26024795-26024915 0.00013 20_[+1]_92 chrX:4563096-4563216 0.00013 82_[+1]_30 chr2R:18674825-18674945 0.00016 105_[+1]_7 chr2R:13569701-13569821 0.00018 68_[+1]_44 chr2L:15427083-15427203 0.00018 51_[+1]_61 chr3R:16229044-16229164 0.00022 74_[+1]_38 chr2L:5469544-5469664 0.00022 57_[+1]_55 chr3L:12090313-12090433 0.00022 92_[+1]_20 chr2L:4368091-4368211 0.00022 64_[+1]_48 chr3R:22780534-22780654 0.00022 59_[+1]_53 chr3L:15662619-15662739 0.00022 58_[+1]_54 chr2R:7417080-7417200 0.00022 49_[+1]_63 chr3L:5653699-5653819 0.00022 1_[+1]_111 chr2L:15425784-15425904 0.00022 94_[+1]_18 chr3R:26027992-26028112 0.00022 67_[+1]_45 chr2L:2461537-2461657 0.00027 72_[+1]_40 chr3L:3976587-3976707 0.00027 60_[+1]_52 chr3R:30762358-30762478 0.00027 69_[+1]_43 chr3L:16025144-16025264 0.00027 59_[+1]_53 chr2L:1670599-1670719 0.00027 17_[+1]_95 chr3R:11378664-11378784 0.00027 12_[+1]_100 chr2L:9592869-9592989 0.00027 11_[+1]_101 chr2R:11401103-11401223 0.00027 95_[+1]_17 chr2L:9454512-9454632 0.00027 112_[+1] chr2R:23886706-23886826 0.00027 10_[+1]_102 chr3R:26028193-26028313 0.00033 22_[+1]_90 chr2L:8857852-8857972 0.00033 81_[+1]_31 chr3L:14119030-14119150 0.00033 81_[+1]_31 chr3L:15031865-15031985 0.00033 39_[+1]_73 chr2R:13196262-13196382 0.00033 45_[+1]_67 chr3L:21066582-21066702 0.00033 64_[+1]_48 chr3L:20789442-20789562 0.00033 98_[+1]_14 chr2R:20846160-20846280 0.00033 66_[+1]_46 chr2R:13567711-13567831 0.00033 79_[+1]_33 chrX:457147-457267 0.00033 60_[+1]_52 chr2L:22037044-22037164 0.00036 109_[+1]_3 chr2L:9988718-9988838 0.00036 45_[+1]_67 chr2L:4363803-4363923 0.00036 88_[+1]_24 chr2R:25212956-25213076 0.00036 38_[+1]_74 chr3R:29310454-29310574 0.00036 60_[+1]_52 chr2R:18666232-18666352 0.00036 64_[+1]_48 chr3L:1360220-1360340 0.00036 11_[+1]_101 chr2R:13561069-13561189 0.00038 91_[+1]_21 chrX:9729100-9729220 0.00038 45_[+1]_67 chr2L:15478354-15478474 0.00038 6_[+1]_106 chr3L:15746378-15746498 0.00038 27_[+1]_85 chr3R:26032624-26032744 0.00038 78_[+1]_34 chr3R:19319258-19319378 0.00044 55_[+1]_57 chr3R:15584718-15584838 0.00048 104_[+1]_8 chr2R:24280469-24280589 0.00048 82_[+1]_30 chr2R:25204997-25205117 0.00048 52_[+1]_60 chr3R:29269132-29269252 0.00048 19_[+1]_93 chr2L:18775420-18775540 0.00048 59_[+1]_53 chr3L:5982015-5982135 0.00048 48_[+1]_64 chr2L:19037188-19037308 0.00048 20_[+1]_92 chr2R:8802067-8802187 0.00051 30_[+1]_82 chr2L:9989941-9990061 0.00051 48_[+1]_64 chr2L:12622080-12622200 0.00057 65_[+1]_47 chr3L:19899393-19899513 0.0006 1_[+1]_111 chr2L:17264250-17264370 0.0006 57_[+1]_55 chr3L:2853059-2853179 0.0006 101_[+1]_11 chr2R:6573430-6573550 0.00068 100_[+1]_12 chr3L:18229427-18229547 0.00068 107_[+1]_5 chr2R:12777301-12777421 0.00068 73_[+1]_39 chr2R:9714682-9714802 0.00071 35_[+1]_77 chr3R:9027193-9027313 0.00071 59_[+1]_53 chr2L:17222279-17222399 0.00071 102_[+1]_10 chr3L:1431576-1431696 0.00075 45_[+1]_67 chr2R:13564634-13564754 0.00075 96_[+1]_16 chr3R:29309403-29309523 0.00075 60_[+1]_52 chr3L:17463584-17463704 0.00075 105_[+1]_7 chr2R:20859867-20859987 0.00081 111_[+1]_1 chr2L:10608811-10608931 0.00081 67_[+1]_45 chr3R:25636745-25636865 0.00081 25_[+1]_87 chr3L:13135043-13135163 0.00081 72_[+1]_40 chr2R:11398104-11398224 0.00084 97_[+1]_15 chr3L:18296623-18296743 0.00088 [+1]_112 chr3L:297203-297323 0.00088 80_[+1]_32 chr2R:7998323-7998443 0.00094 45_[+1]_67 chr2L:14265180-14265300 0.00094 86_[+1]_26 chr2L:10553810-10553930 0.0011 54_[+1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCASCTGY width=8 seqs=135 chr2L:13878848-13878968 ( 13) GCAGCTGC 1 chr2R:14433393-14433513 ( 1) GCAGCTGC 1 chr2R:24882656-24882776 ( 2) GCAGCTGC 1 chr2L:20995863-20995983 ( 49) GCAGCTGC 1 chr2L:7641012-7641132 ( 76) GCAGCTGC 1 chr3R:14597442-14597562 ( 88) GCAGCTGC 1 chrX:451216-451336 ( 27) GCAGCTGC 1 chr2R:11794176-11794296 ( 9) GCAGCTGC 1 chr3R:31606533-31606653 ( 55) GCAGCTGC 1 chr2R:18672256-18672376 ( 23) GCAGCTGC 1 chr2R:22408454-22408574 ( 60) GCAGCTGC 1 chr3L:16049229-16049349 ( 16) GCAGCTGC 1 chrX:19842399-19842519 ( 59) GCAGCTGC 1 chr3R:25596491-25596611 ( 35) GCAGCTGC 1 chr3R:25629551-25629671 ( 113) GCAGCTGC 1 chr3L:47960-48080 ( 24) GCAGCTGC 1 chr3L:17653236-17653356 ( 59) ACAGCTGC 1 chr2R:8235746-8235866 ( 110) ACAGCTGC 1 chr2R:13188031-13188151 ( 58) ACAGCTGC 1 chr2R:13569906-13570026 ( 39) ACAGCTGC 1 chr3R:10355090-10355210 ( 4) ACAGCTGC 1 chr2L:17740681-17740801 ( 110) ACAGCTGC 1 chr3R:26032398-26032518 ( 66) ACAGCTGC 1 chr2R:20600793-20600913 ( 24) ACAGCTGC 1 chr3L:3980182-3980302 ( 71) ACAGCTGC 1 chr2R:25198569-25198689 ( 76) ACAGCTGC 1 chr2R:8245235-8245355 ( 110) ACAGCTGC 1 chr2R:14429547-14429667 ( 48) ACAGCTGC 1 chr3L:5859204-5859324 ( 30) ACAGCTGC 1 chr2R:20602682-20602802 ( 5) GCAGCTGT 1 chr3R:19931315-19931435 ( 60) GCAGCTGT 1 chr3L:676035-676155 ( 15) GCACCTGC 1 chrX:19842600-19842720 ( 23) GCACCTGC 1 chr3R:19344080-19344200 ( 74) GCAGCTGT 1 chr2R:24276990-24277110 ( 32) GCAGCTGT 1 chr3R:25999408-25999528 ( 68) GCAGCTGT 1 chr3R:9024950-9025070 ( 64) GCAGCTGT 1 chr2R:17476198-17476318 ( 23) GCAGCTGT 1 chr3R:26040032-26040152 ( 55) GCAGCTGT 1 chr2L:12457815-12457935 ( 6) GCACCTGC 1 chr3R:30474837-30474957 ( 52) GCAGCTGT 1 chr3L:908741-908861 ( 57) ACAGCTGT 1 chr2R:24275505-24275625 ( 100) ACAGCTGT 1 chr3L:12506199-12506319 ( 30) GCAGGTGC 1 chrX:2987387-2987507 ( 39) GCAGGTGC 1 chr3R:8171346-8171466 ( 57) ACACCTGC 1 chr3R:21644328-21644448 ( 7) ACAGCTGT 1 chr3R:26030616-26030736 ( 27) ACACCTGC 1 chr2R:12776163-12776283 ( 25) ACAGCTGT 1 chr3R:26002603-26002723 ( 51) ACACCTGC 1 chr3L:15847309-15847429 ( 39) GCAGGTGC 1 chr2R:13570874-13570994 ( 53) GCATCTGC 1 chr2L:15457611-15457731 ( 97) GCATCTGC 1 chr3R:16528418-16528538 ( 48) GCATCTGC 1 chr3R:26024795-26024915 ( 21) GCACCTGT 1 chrX:4563096-4563216 ( 83) GCACCTGT 1 chr2R:18674825-18674945 ( 106) GCAGATGC 1 chr2R:13569701-13569821 ( 69) ACATCTGC 1 chr2L:15427083-15427203 ( 52) ACATCTGC 1 chr3R:16229044-16229164 ( 75) GCACGTGC 1 chr2L:5469544-5469664 ( 58) GCACGTGC 1 chr3L:12090313-12090433 ( 93) GCACGTGC 1 chr2L:4368091-4368211 ( 65) GCAGGTGT 1 chr3R:22780534-22780654 ( 60) GCACGTGC 1 chr3L:15662619-15662739 ( 59) GCACGTGC 1 chr2R:7417080-7417200 ( 50) GCAGGTGT 1 chr3L:5653699-5653819 ( 2) GCACGTGC 1 chr2L:15425784-15425904 ( 95) GCACGTGC 1 chr3R:26027992-26028112 ( 68) GCACGTGC 1 chr2L:2461537-2461657 ( 73) GCATCTGT 1 chr3L:3976587-3976707 ( 61) CCAGCTGC 1 chr3R:30762358-30762478 ( 70) CCAGCTGC 1 chr3L:16025144-16025264 ( 60) ACAGATGC 1 chr2L:1670599-1670719 ( 18) CCAGCTGC 1 chr3R:11378664-11378784 ( 13) GCATCTGT 1 chr2L:9592869-9592989 ( 12) CCAGCTGC 1 chr2R:11401103-11401223 ( 96) CCAGCTGC 1 chr2L:9454512-9454632 ( 113) ACAGATGC 1 chr2R:23886706-23886826 ( 11) CCAGCTGC 1 chr3R:26028193-26028313 ( 23) ACACGTGC 1 chr2L:8857852-8857972 ( 82) ACACGTGC 1 chr3L:14119030-14119150 ( 82) ACACGTGC 1 chr3L:15031865-15031985 ( 40) GCACATGC 1 chr2R:13196262-13196382 ( 46) GCAGATGT 1 chr3L:21066582-21066702 ( 65) GCAGATGT 1 chr3L:20789442-20789562 ( 99) GCACATGC 1 chr2R:20846160-20846280 ( 67) GCAGATGT 1 chr2R:13567711-13567831 ( 80) ACACGTGC 1 chrX:457147-457267 ( 61) GCAGATGT 1 chr2L:22037044-22037164 ( 110) ACATCTGT 1 chr2L:9988718-9988838 ( 46) ACATCTGT 1 chr2L:4363803-4363923 ( 89) ACATCTGT 1 chr2R:25212956-25213076 ( 39) GCATGTGC 1 chr3R:29310454-29310574 ( 61) ACATCTGT 1 chr2R:18666232-18666352 ( 65) ACATCTGT 1 chr3L:1360220-1360340 ( 12) ACATCTGT 1 chr2R:13561069-13561189 ( 92) GCACGTGT 1 chrX:9729100-9729220 ( 46) GCACGTGT 1 chr2L:15478354-15478474 ( 7) GCACGTGT 1 chr3L:15746378-15746498 ( 28) GCACGTGT 1 chr3R:26032624-26032744 ( 79) GCACGTGT 1 chr3R:19319258-19319378 ( 56) ACAGATGT 1 chr3R:15584718-15584838 ( 105) TCAGCTGC 1 chr2R:24280469-24280589 ( 83) TCAGCTGC 1 chr2R:25204997-25205117 ( 53) ACATGTGC 1 chr3R:29269132-29269252 ( 20) GCATATGC 1 chr2L:18775420-18775540 ( 60) ACATGTGC 1 chr3L:5982015-5982135 ( 49) ACATGTGC 1 chr2L:19037188-19037308 ( 21) GCATATGC 1 chr2R:8802067-8802187 ( 31) GCACATGT 1 chr2L:9989941-9990061 ( 49) ACACGTGT 1 chr2L:12622080-12622200 ( 66) ACATATGC 1 chr3L:19899393-19899513 ( 2) ACACATGT 1 chr2L:17264250-17264370 ( 58) ACACATGT 1 chr3L:2853059-2853179 ( 102) ACACATGT 1 chr2R:6573430-6573550 ( 101) GCATATGT 1 chr3L:18229427-18229547 ( 108) TCAGCTGT 1 chr2R:12777301-12777421 ( 74) TCAGCTGT 1 chr2R:9714682-9714802 ( 36) CCACGTGC 1 chr3R:9027193-9027313 ( 60) CCACGTGC 1 chr2L:17222279-17222399 ( 103) CCACGTGC 1 chr3L:1431576-1431696 ( 46) ACATATGT 1 chr2R:13564634-13564754 ( 97) ACATATGT 1 chr3R:29309403-29309523 ( 61) ACATATGT 1 chr3L:17463584-17463704 ( 106) ACATATGT 1 chr2R:20859867-20859987 ( 112) CCACATGC 1 chr2L:10608811-10608931 ( 68) CCAGATGT 1 chr3R:25636745-25636865 ( 26) CCAGATGT 1 chr3L:13135043-13135163 ( 73) TCACCTGT 1 chr2R:11398104-11398224 ( 98) CCATGTGC 1 chr3L:18296623-18296743 ( 1) TCACGTGC 1 chr3L:297203-297323 ( 81) TCACGTGC 1 chr2R:7998323-7998443 ( 46) GCAGCAGC 1 chr2L:14265180-14265300 ( 87) GCAGCAGC 1 chr2L:10553810-10553930 ( 55) GCAGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.46923 E= 5.8e-053 45 -135 100 -226 -1372 203 -1372 -1372 197 -1372 -1372 -1372 -1372 24 105 -37 -46 122 -4 -1372 -352 -1372 -1372 198 -1372 -1372 199 -1372 -1372 134 -1372 60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 135 E= 5.8e-053 0.348148 0.096296 0.503704 0.051852 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.288889 0.518519 0.192593 0.185185 0.570370 0.244444 0.000000 0.022222 0.000000 0.000000 0.977778 0.000000 0.000000 1.000000 0.000000 0.000000 0.622222 0.000000 0.377778 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGY MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CA[GC][CG]TG[CT] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACGCGC MEME-2 width = 8 sites = 45 llr = 381 E-value = 3.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:a:1311 pos.-specific C :a:8:7:8 probability G 8:::9:9: matrix T :::2:::1 bits 2.0 ** 1.8 ** 1.6 ** * 1.4 **** * Relative 1.2 ******** Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACGCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20859867-20859987 57 1.45e-05 ACTTGGCCAG GCACGCGC TCCTCAGCCA chr3R:19371127-19371247 34 1.45e-05 GTCGGCGTCA GCACGCGC GGGATCGAGC chr2L:7641012-7641132 48 1.45e-05 GCTGCGAGCG GCACGCGC TGAAAAAGGG chr2R:10537588-10537708 22 1.45e-05 CTTTTTCTAA GCACGCGC CAGACGGCAA chr2L:6234055-6234175 50 1.45e-05 GCACGCACCA GCACGCGC AGCTGGTAAA chr3L:2853059-2853179 86 1.45e-05 TACATTGTTG GCACGCGC AGGCGCGCAC chr2R:8245235-8245355 72 1.45e-05 TCTTTTCCTG GCACGCGC CAAAGTCTCC chr2R:14429547-14429667 33 1.45e-05 CGACCATTAG GCACGCGC ATGCGCGACA chr3L:20295135-20295255 59 2.97e-05 GCACAGACGA GCACGAGC CACCAGGACG chr2R:6595892-6596012 17 2.97e-05 tgagCAAATG GCACGAGC CCAGTCTTTC chr3R:29310454-29310574 81 2.97e-05 GTTGCACGTA GCACGAGC TATGTCCTTA chr2R:11794176-11794296 52 2.97e-05 ACAAGGACCA GCACGAGC TACGCAGCCT chr3R:29309403-29309523 51 2.97e-05 TGATGTTATG GCACGAGC CAACATATGT chr2L:10553810-10553930 40 2.97e-05 GCCACATGTG GCACGAGC GACATGAGCA chr3R:11350991-11351111 46 2.97e-05 GCTTCATGTG GCACGAGC CCTTTGTGAT chr2R:19870814-19870934 89 5.92e-05 TGGGAATTAA ACACGCGC GAATAGGAAT chr3L:16047209-16047329 100 5.92e-05 AGAGCGAAGA GCATGCGC CGCGCGCGTG chr2R:23573135-23573255 22 5.92e-05 TTTCACACAG ACACGCGC CGTCGCATCC chr3R:8690319-8690439 30 5.92e-05 TGCGTTGGAC GCATGCGC GCCAACCCCA chr3L:20789442-20789562 112 5.92e-05 CATGCTACAC GCATGCGC T chr2R:11401103-11401223 44 5.92e-05 GAGGTCCTGC GCATGCGC CACGTGCCTT chr3R:18234888-18235008 36 5.92e-05 TGAGAGGGTG ACACGCGC TGTGGGAAGA chr2R:12970806-12970926 79 5.92e-05 GTATTCCTTG GCATGCGC TGGTGACGAC chr2L:18775420-18775540 91 5.92e-05 TTGCATGGGC GCATGCGC AGCGCACAAA chr2R:22408454-22408574 7 5.92e-05 ATAAAC ACACGCGC GACCAGGACA chrX:3832350-3832470 60 7.39e-05 TGGCCGTGTT GCACACGC GCCAAACGCG chr3R:16389306-16389426 37 7.39e-05 ACTCACCGGG GCACACGC CGCAACGGTT chr3R:29269132-29269252 56 7.39e-05 TGTGGCAAAT GCACACGC AAGGAAGCGA chr3R:19344080-19344200 10 7.39e-05 TTTGGTAAG GCACACGC AGGATATGCG chr3R:26025448-26025568 20 7.39e-05 CGTTGGAGGA GCACACGC ACAGCGAGCG chr2R:6586008-6586128 60 8.91e-05 GAGTTGGACT GCACGCGA CTGTCGGTTT chr3L:899306-899426 113 8.91e-05 CGGACTGACG GCACGCGA chr3R:10284275-10284395 35 8.91e-05 CTCCATTATG GCACGCGA CTCGCTCGAA chr2R:18674825-18674945 42 1.04e-04 ACGCCCACGG GCACGCGT ACGCCCTGAA chr3R:19319258-19319378 25 1.04e-04 TGCGGTTCGC GCACGCGT TTTCAGCGCA chr2R:18670341-18670461 71 1.04e-04 CTCGTGCTCA GCACGCGT TGTTTTTCAC chr3R:31704942-31705062 65 1.49e-04 GCGTATCGCA GCACGCAC ATCTCGAGGA chr3L:18268264-18268384 41 1.49e-04 CTGACTTGTG GCATGAGC CCTGACATGT chr2R:10551856-10551976 68 1.49e-04 CACGAGATCC ACACGAGC CAAAATCATG chr2L:17740681-17740801 34 1.49e-04 TCCGACAATG GCACGCAC CCTGTAATTT chr2R:16278691-16278811 79 1.49e-04 GCTCAACGGC ACACGAGC GTGTGGAGGG chr3R:30474837-30474957 61 1.49e-04 GGCAGCTGTT GCACGCAC CTATGCTGTT chr3R:25999080-25999200 89 1.49e-04 CACTCGACGC ACACGAGC AATGTTCCCA chr3R:22780534-22780654 68 1.64e-04 CAGCACGTGC ACATGCGC CGTGCCGGGA chr3L:13863539-13863659 40 1.95e-04 ATTTCCACTC GCACGAGA CGTTCACATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20859867-20859987 1.5e-05 56_[+2]_56 chr3R:19371127-19371247 1.5e-05 33_[+2]_79 chr2L:7641012-7641132 1.5e-05 47_[+2]_65 chr2R:10537588-10537708 1.5e-05 21_[+2]_91 chr2L:6234055-6234175 1.5e-05 49_[+2]_63 chr3L:2853059-2853179 1.5e-05 85_[+2]_27 chr2R:8245235-8245355 1.5e-05 71_[+2]_41 chr2R:14429547-14429667 1.5e-05 32_[+2]_80 chr3L:20295135-20295255 3e-05 58_[+2]_54 chr2R:6595892-6596012 3e-05 16_[+2]_96 chr3R:29310454-29310574 3e-05 80_[+2]_32 chr2R:11794176-11794296 3e-05 51_[+2]_61 chr3R:29309403-29309523 3e-05 50_[+2]_62 chr2L:10553810-10553930 3e-05 39_[+2]_73 chr3R:11350991-11351111 3e-05 45_[+2]_67 chr2R:19870814-19870934 5.9e-05 88_[+2]_24 chr3L:16047209-16047329 5.9e-05 99_[+2]_13 chr2R:23573135-23573255 5.9e-05 21_[+2]_91 chr3R:8690319-8690439 5.9e-05 29_[+2]_83 chr3L:20789442-20789562 5.9e-05 111_[+2]_1 chr2R:11401103-11401223 5.9e-05 43_[+2]_69 chr3R:18234888-18235008 5.9e-05 35_[+2]_77 chr2R:12970806-12970926 5.9e-05 78_[+2]_34 chr2L:18775420-18775540 5.9e-05 90_[+2]_22 chr2R:22408454-22408574 5.9e-05 6_[+2]_106 chrX:3832350-3832470 7.4e-05 59_[+2]_53 chr3R:16389306-16389426 7.4e-05 36_[+2]_76 chr3R:29269132-29269252 7.4e-05 55_[+2]_57 chr3R:19344080-19344200 7.4e-05 9_[+2]_103 chr3R:26025448-26025568 7.4e-05 19_[+2]_93 chr2R:6586008-6586128 8.9e-05 59_[+2]_53 chr3L:899306-899426 8.9e-05 112_[+2] chr3R:10284275-10284395 8.9e-05 34_[+2]_78 chr2R:18674825-18674945 0.0001 41_[+2]_71 chr3R:19319258-19319378 0.0001 24_[+2]_88 chr2R:18670341-18670461 0.0001 70_[+2]_42 chr3R:31704942-31705062 0.00015 64_[+2]_48 chr3L:18268264-18268384 0.00015 40_[+2]_72 chr2R:10551856-10551976 0.00015 67_[+2]_45 chr2L:17740681-17740801 0.00015 33_[+2]_79 chr2R:16278691-16278811 0.00015 78_[+2]_34 chr3R:30474837-30474957 0.00015 60_[+2]_52 chr3R:25999080-25999200 0.00015 88_[+2]_24 chr3R:22780534-22780654 0.00016 67_[+2]_45 chr3L:13863539-13863659 0.0002 39_[+2]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACGCGC width=8 seqs=45 chr2R:20859867-20859987 ( 57) GCACGCGC 1 chr3R:19371127-19371247 ( 34) GCACGCGC 1 chr2L:7641012-7641132 ( 48) GCACGCGC 1 chr2R:10537588-10537708 ( 22) GCACGCGC 1 chr2L:6234055-6234175 ( 50) GCACGCGC 1 chr3L:2853059-2853179 ( 86) GCACGCGC 1 chr2R:8245235-8245355 ( 72) GCACGCGC 1 chr2R:14429547-14429667 ( 33) GCACGCGC 1 chr3L:20295135-20295255 ( 59) GCACGAGC 1 chr2R:6595892-6596012 ( 17) GCACGAGC 1 chr3R:29310454-29310574 ( 81) GCACGAGC 1 chr2R:11794176-11794296 ( 52) GCACGAGC 1 chr3R:29309403-29309523 ( 51) GCACGAGC 1 chr2L:10553810-10553930 ( 40) GCACGAGC 1 chr3R:11350991-11351111 ( 46) GCACGAGC 1 chr2R:19870814-19870934 ( 89) ACACGCGC 1 chr3L:16047209-16047329 ( 100) GCATGCGC 1 chr2R:23573135-23573255 ( 22) ACACGCGC 1 chr3R:8690319-8690439 ( 30) GCATGCGC 1 chr3L:20789442-20789562 ( 112) GCATGCGC 1 chr2R:11401103-11401223 ( 44) GCATGCGC 1 chr3R:18234888-18235008 ( 36) ACACGCGC 1 chr2R:12970806-12970926 ( 79) GCATGCGC 1 chr2L:18775420-18775540 ( 91) GCATGCGC 1 chr2R:22408454-22408574 ( 7) ACACGCGC 1 chrX:3832350-3832470 ( 60) GCACACGC 1 chr3R:16389306-16389426 ( 37) GCACACGC 1 chr3R:29269132-29269252 ( 56) GCACACGC 1 chr3R:19344080-19344200 ( 10) GCACACGC 1 chr3R:26025448-26025568 ( 20) GCACACGC 1 chr2R:6586008-6586128 ( 60) GCACGCGA 1 chr3L:899306-899426 ( 113) GCACGCGA 1 chr3R:10284275-10284395 ( 35) GCACGCGA 1 chr2R:18674825-18674945 ( 42) GCACGCGT 1 chr3R:19319258-19319378 ( 25) GCACGCGT 1 chr2R:18670341-18670461 ( 71) GCACGCGT 1 chr3R:31704942-31705062 ( 65) GCACGCAC 1 chr3L:18268264-18268384 ( 41) GCATGAGC 1 chr2R:10551856-10551976 ( 68) ACACGAGC 1 chr2L:17740681-17740801 ( 34) GCACGCAC 1 chr2R:16278691-16278811 ( 79) ACACGAGC 1 chr3R:30474837-30474957 ( 61) GCACGCAC 1 chr3R:25999080-25999200 ( 89) ACACGAGC 1 chr3R:22780534-22780654 ( 68) ACATGCGC 1 chr3L:13863539-13863659 ( 40) GCACGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 3.0e-006 -52 -1214 171 -1214 -1214 203 -1214 -1214 197 -1214 -1214 -1214 -1214 175 -1214 -48 -120 -1214 182 -1214 6 158 -1214 -1214 -194 -1214 189 -1214 -152 178 -1214 -190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.0e-006 0.177778 0.000000 0.822222 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.822222 0.000000 0.177778 0.111111 0.000000 0.888889 0.000000 0.266667 0.733333 0.000000 0.000000 0.066667 0.000000 0.933333 0.000000 0.088889 0.844444 0.000000 0.066667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCGC MEME-2 regular expression -------------------------------------------------------------------------------- GCACG[CA]GC -------------------------------------------------------------------------------- Time 13.48 secs. ******************************************************************************** ******************************************************************************** MOTIF RYGYGTGY MEME-3 width = 8 sites = 53 llr = 427 E-value = 4.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 42:::::: pos.-specific C :5:5:::6 probability G 6:a:a:a: matrix T :3:5:a:4 bits 2.0 * *** 1.8 * *** 1.6 * *** 1.4 * *** Relative 1.2 * *** Entropy 1.0 * ****** (11.6 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGTGTGC consensus AT C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21789637-21789757 85 2.93e-05 TATGTGAGAG GCGCGTGC CCCGCTCTGA chr2R:7998323-7998443 76 2.93e-05 GCAACGCGCA GCGCGTGC TTGCCGAGAT chr2R:6595892-6596012 58 2.93e-05 ACTAATTTGT GCGCGTGC CGACGGCTCA chr2R:7417080-7417200 78 2.93e-05 GTTTAGGGGC GCGTGTGC CAGCCTCGTT chr3R:19319258-19319378 72 2.93e-05 GTTTGGTGCG GCGTGTGC GCCACAGCCA chr3L:13135043-13135163 31 2.93e-05 TCGTTAACTC GCGCGTGC CCCATGCTGC chr2L:19037188-19037308 46 2.93e-05 AGGCGCTAGG GCGCGTGC CATTTTGTCT chr3L:1431369-1431489 57 2.93e-05 TTGAGTGGCT GCGCGTGC GCGGCGAACG chrX:19842399-19842519 18 2.93e-05 CTGTTGTGTG GCGCGTGC AAAAGGAGCG chr3R:8682138-8682258 11 2.93e-05 AGGCAATGTT GCGCGTGC GTAGCGCACG chrX:4563096-4563216 46 2.93e-05 CAGGGATGCA GCGCGTGC GAGGATCCTC chr3L:15031865-15031985 72 8.89e-05 gtgtatgcgt gcgtgtgt gtgtgtgCCA chr3R:5109999-5110119 104 8.89e-05 TCCACGGACC GCGTGTGT GCAATTAAA chr3L:16047209-16047329 111 8.89e-05 CATGCGCCGC GCGCGTGT CA chrX:9729100-9729220 58 8.89e-05 ACGTGTCCGT GTGCGTGC CATCTCGCTC chr3L:18229427-18229547 73 8.89e-05 CACAAGGTGT GTGTGTGC CTGCAGTATC chrX:460644-460764 59 8.89e-05 TGTTTTGTAT GTGTGTGC TCTGTGTTGT chr2R:13042726-13042846 102 8.89e-05 GTCTGTCGCT GCGTGTGT ATGTATAATA chr3R:21644328-21644448 112 8.89e-05 AGGATGCGTC GCGCGTGT C chr3R:26002603-26002723 106 8.89e-05 ACCACTCAAT GCGTGTGT GTGTGTG chr3R:16552401-16552521 85 8.89e-05 AGCTGAAGGC GCGTGTGT TTGTTTGTGC chr2R:20600793-20600913 104 8.89e-05 GGATGTGTGT GTGTGTGC GTAAATCCG chr3L:1360220-1360340 102 8.89e-05 CAACATGTGT GTGTGTGC CGAGAGTCCT chr2L:5469544-5469664 82 1.19e-04 GTGCCGCGGC ACGTGTGC CACAAAGTGC chr3L:676035-676155 68 1.19e-04 TTCGTGTCCG ACGCGTGC CGCAGTGTGT chr3R:9027193-9027313 80 1.19e-04 GTGTCAGAAG ACGTGTGC GGACAATTAA chr3L:5982015-5982135 6 1.19e-04 CTGGT ACGTGTGC GTTTGCCGCC chr3L:16049229-16049349 6 1.19e-04 TGTGG ACGTGTGC CGGCAGCTGC chr3R:25629551-25629671 4 1.19e-04 GGC ACGTGTGC TTAACGATCG chr3L:1431576-1431696 26 1.49e-04 ATTtgtgtgt gtgtgtgt gtgtgtCAAA chr3R:26010707-26010827 73 1.49e-04 CCTGTCTGCG GTGCGTGT CGCTGGCAGG chr2L:4352030-4352150 56 1.49e-04 CATTTTCTGT GTGTGTGT GTTTGGGCCA chr3L:321592-321712 42 1.49e-04 CACACAGGAT GTGCGTGT CATCAGACAG chr3R:19995589-19995709 54 1.49e-04 CCCCGGAAGG GTGTGTGT TTGCCAGGGT chr3R:26034953-26035073 108 1.49e-04 TTAATCTTTA GTGTGTGT CAATT chr2L:15319923-15320043 75 2.40e-04 CAGGAGCAAG ACGCGTGT TGTTTTGACG chr2L:17262418-17262538 37 2.40e-04 CCAAATCCGG ACGCGTGT CCAGTTTGTT chr2R:14431110-14431230 20 2.40e-04 GAGCAGGTTT ATGTGTGC GCCGCCGGTA chr2R:8235746-8235866 92 2.40e-04 ATTTCGTATG GAGTGTGC CTGATGCGAA chr2R:10551856-10551976 2 2.40e-04 A ATGCGTGC GCTCTCCCTC chr2L:6204260-6204380 52 2.40e-04 GAGCTCAATA GAGCGTGC CGTATGAATA chr2R:9694785-9694905 98 2.40e-04 CAAGTGTTGA GAGCGTGC CATTAGGAAA chr3L:14979408-14979528 27 2.40e-04 AACGTACGTT ATGCGTGC GCTCCTCACG chr2L:6240998-6241118 110 3.02e-04 GATGGCAATG ATGTGTGT TAA chr2L:17564714-17564834 108 3.02e-04 TTCAATGTGA ATGTGTGT CACGG chr3L:6104718-6104838 6 3.02e-04 TGTTA GAGCGTGT TAGTCACACG chr3L:17463584-17463704 48 3.02e-04 TTGTACGAGT ATGCGTGT TTGCGGCACG chr3R:30474837-30474957 90 3.02e-04 TACTACAACT GAGTGTGT ATCTGTATCT chr3L:12090313-12090433 106 3.33e-04 CGTGCGTCAA AAGCGTGC CCATGTG chr3R:18234888-18235008 103 3.33e-04 AGAAGGTCAC AAGCGTGC CACCAAGTCG chr2L:15327185-15327305 78 3.33e-04 GAAAAGAAAG AAGCGTGC GCCGGCCTGT chr3R:26002803-26002923 30 3.64e-04 AGCGTGCGGT AAGTGTGT ctcagtcgca chr3L:18224742-18224862 86 3.64e-04 CACACTCTGC AAGTGTGT CCCGGGTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21789637-21789757 2.9e-05 84_[+3]_28 chr2R:7998323-7998443 2.9e-05 75_[+3]_37 chr2R:6595892-6596012 2.9e-05 57_[+3]_55 chr2R:7417080-7417200 2.9e-05 77_[+3]_35 chr3R:19319258-19319378 2.9e-05 71_[+3]_41 chr3L:13135043-13135163 2.9e-05 30_[+3]_82 chr2L:19037188-19037308 2.9e-05 45_[+3]_67 chr3L:1431369-1431489 2.9e-05 56_[+3]_56 chrX:19842399-19842519 2.9e-05 17_[+3]_95 chr3R:8682138-8682258 2.9e-05 10_[+3]_102 chrX:4563096-4563216 2.9e-05 45_[+3]_67 chr3L:15031865-15031985 8.9e-05 71_[+3]_41 chr3R:5109999-5110119 8.9e-05 103_[+3]_9 chr3L:16047209-16047329 8.9e-05 110_[+3]_2 chrX:9729100-9729220 8.9e-05 57_[+3]_55 chr3L:18229427-18229547 8.9e-05 72_[+3]_40 chrX:460644-460764 8.9e-05 58_[+3]_54 chr2R:13042726-13042846 8.9e-05 101_[+3]_11 chr3R:21644328-21644448 8.9e-05 111_[+3]_1 chr3R:26002603-26002723 8.9e-05 105_[+3]_7 chr3R:16552401-16552521 8.9e-05 84_[+3]_28 chr2R:20600793-20600913 8.9e-05 103_[+3]_9 chr3L:1360220-1360340 8.9e-05 101_[+3]_11 chr2L:5469544-5469664 0.00012 81_[+3]_31 chr3L:676035-676155 0.00012 67_[+3]_45 chr3R:9027193-9027313 0.00012 79_[+3]_33 chr3L:5982015-5982135 0.00012 5_[+3]_107 chr3L:16049229-16049349 0.00012 5_[+3]_107 chr3R:25629551-25629671 0.00012 3_[+3]_109 chr3L:1431576-1431696 0.00015 25_[+3]_87 chr3R:26010707-26010827 0.00015 72_[+3]_40 chr2L:4352030-4352150 0.00015 55_[+3]_57 chr3L:321592-321712 0.00015 41_[+3]_71 chr3R:19995589-19995709 0.00015 53_[+3]_59 chr3R:26034953-26035073 0.00015 107_[+3]_5 chr2L:15319923-15320043 0.00024 74_[+3]_38 chr2L:17262418-17262538 0.00024 36_[+3]_76 chr2R:14431110-14431230 0.00024 19_[+3]_93 chr2R:8235746-8235866 0.00024 91_[+3]_21 chr2R:10551856-10551976 0.00024 1_[+3]_111 chr2L:6204260-6204380 0.00024 51_[+3]_61 chr2R:9694785-9694905 0.00024 97_[+3]_15 chr3L:14979408-14979528 0.00024 26_[+3]_86 chr2L:6240998-6241118 0.0003 109_[+3]_3 chr2L:17564714-17564834 0.0003 107_[+3]_5 chr3L:6104718-6104838 0.0003 5_[+3]_107 chr3L:17463584-17463704 0.0003 47_[+3]_65 chr3R:30474837-30474957 0.0003 89_[+3]_23 chr3L:12090313-12090433 0.00033 105_[+3]_7 chr3R:18234888-18235008 0.00033 102_[+3]_10 chr2L:15327185-15327305 0.00033 77_[+3]_35 chr3R:26002803-26002923 0.00036 29_[+3]_83 chr3L:18224742-18224862 0.00036 85_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RYGYGTGY width=8 seqs=53 chr2L:21789637-21789757 ( 85) GCGCGTGC 1 chr2R:7998323-7998443 ( 76) GCGCGTGC 1 chr2R:6595892-6596012 ( 58) GCGCGTGC 1 chr2R:7417080-7417200 ( 78) GCGTGTGC 1 chr3R:19319258-19319378 ( 72) GCGTGTGC 1 chr3L:13135043-13135163 ( 31) GCGCGTGC 1 chr2L:19037188-19037308 ( 46) GCGCGTGC 1 chr3L:1431369-1431489 ( 57) GCGCGTGC 1 chrX:19842399-19842519 ( 18) GCGCGTGC 1 chr3R:8682138-8682258 ( 11) GCGCGTGC 1 chrX:4563096-4563216 ( 46) GCGCGTGC 1 chr3L:15031865-15031985 ( 72) GCGTGTGT 1 chr3R:5109999-5110119 ( 104) GCGTGTGT 1 chr3L:16047209-16047329 ( 111) GCGCGTGT 1 chrX:9729100-9729220 ( 58) GTGCGTGC 1 chr3L:18229427-18229547 ( 73) GTGTGTGC 1 chrX:460644-460764 ( 59) GTGTGTGC 1 chr2R:13042726-13042846 ( 102) GCGTGTGT 1 chr3R:21644328-21644448 ( 112) GCGCGTGT 1 chr3R:26002603-26002723 ( 106) GCGTGTGT 1 chr3R:16552401-16552521 ( 85) GCGTGTGT 1 chr2R:20600793-20600913 ( 104) GTGTGTGC 1 chr3L:1360220-1360340 ( 102) GTGTGTGC 1 chr2L:5469544-5469664 ( 82) ACGTGTGC 1 chr3L:676035-676155 ( 68) ACGCGTGC 1 chr3R:9027193-9027313 ( 80) ACGTGTGC 1 chr3L:5982015-5982135 ( 6) ACGTGTGC 1 chr3L:16049229-16049349 ( 6) ACGTGTGC 1 chr3R:25629551-25629671 ( 4) ACGTGTGC 1 chr3L:1431576-1431696 ( 26) GTGTGTGT 1 chr3R:26010707-26010827 ( 73) GTGCGTGT 1 chr2L:4352030-4352150 ( 56) GTGTGTGT 1 chr3L:321592-321712 ( 42) GTGCGTGT 1 chr3R:19995589-19995709 ( 54) GTGTGTGT 1 chr3R:26034953-26035073 ( 108) GTGTGTGT 1 chr2L:15319923-15320043 ( 75) ACGCGTGT 1 chr2L:17262418-17262538 ( 37) ACGCGTGT 1 chr2R:14431110-14431230 ( 20) ATGTGTGC 1 chr2R:8235746-8235866 ( 92) GAGTGTGC 1 chr2R:10551856-10551976 ( 2) ATGCGTGC 1 chr2L:6204260-6204380 ( 52) GAGCGTGC 1 chr2R:9694785-9694905 ( 98) GAGCGTGC 1 chr3L:14979408-14979528 ( 27) ATGCGTGC 1 chr2L:6240998-6241118 ( 110) ATGTGTGT 1 chr2L:17564714-17564834 ( 108) ATGTGTGT 1 chr3L:6104718-6104838 ( 6) GAGCGTGT 1 chr3L:17463584-17463704 ( 48) ATGCGTGT 1 chr3R:30474837-30474957 ( 90) GAGTGTGT 1 chr3L:12090313-12090433 ( 106) AAGCGTGC 1 chr3R:18234888-18235008 ( 103) AAGCGTGC 1 chr2L:15327185-15327305 ( 78) AAGCGTGC 1 chr3R:26002803-26002923 ( 30) AAGTGTGT 1 chr3L:18224742-18224862 ( 86) AAGTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 4.1e-003 49 -1237 135 -1237 -44 100 -1237 37 -1237 -1237 199 -1237 -1237 100 -1237 103 -1237 -1237 199 -1237 -1237 -1237 -1237 201 -1237 -1237 199 -1237 -1237 125 -1237 74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 4.1e-003 0.358491 0.000000 0.641509 0.000000 0.188679 0.490566 0.000000 0.320755 0.000000 0.000000 1.000000 0.000000 0.000000 0.490566 0.000000 0.509434 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.584906 0.000000 0.415094 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYGYGTGY MEME-3 regular expression -------------------------------------------------------------------------------- [GA][CT]G[TC]GTG[CT] -------------------------------------------------------------------------------- Time 19.42 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAYAA MEME-4 width = 8 sites = 75 llr = 542 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 887aa1a8 pos.-specific C 213::6:: probability G 1::::::: matrix T :1:::3:1 bits 2.0 * 1.8 ** * 1.6 ** * 1.4 ** * Relative 1.2 ** ** Entropy 1.0 ** ** ** (10.4 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAACAA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19870814-19870934 15 1.72e-05 AATAATAAAA AAAAACAA ACAAACGGAT chr2R:14431110-14431230 110 1.72e-05 ACTTCCACAG AAAAACAA GCC chr2R:14433393-14433513 12 1.72e-05 CAGCTGCTCC aaaaacaa aaaaaaaaaa chr3R:26032624-26032744 24 1.72e-05 CGAGAAAAAA AAAAACAA AAAGCAAAGG chr3L:18102179-18102299 55 3.46e-05 ATTTTAATGT AAAAATAA ATTCAATTCG chr2L:20204763-20204883 111 3.46e-05 cgaattgatc aaaaataa ta chr3L:17937447-17937567 9 3.46e-05 AACAAGAC AAAAATAA TAGAAGAAAA chr3R:8924174-8924294 94 3.46e-05 AAGACACACA AAAAATAA AATCATGTTC chr3R:26026790-26026910 65 3.46e-05 AGAGGaaaaa aaaaataa aataaaaata chr3L:15662619-15662739 19 3.46e-05 CAACTAAAAT AAAAATAA AAATCAATTT chr2R:12970806-12970926 28 3.46e-05 AAAGCGGACA AAAAATAA GGGAAGTGAA chr3L:14979408-14979528 100 3.46e-05 GCACCTAAAC AAAAATAA ATGCACCAGA chr3R:26023401-26023521 67 5.11e-05 CAACAGGCCA AACAACAA CCGTCAATAT chr3R:16229044-16229164 109 5.11e-05 caactacaac aacaacaa agag chr3R:24270200-24270320 31 5.11e-05 AAAACACAAC AACAACAA CTGTGAACTG chr3L:3976587-3976707 9 5.11e-05 gcaggggc aacaacaa catcggcagc chr2R:20602682-20602802 58 5.11e-05 ACACACACAC AACAACAA CAGCAGCAAA chr2L:15478354-15478474 30 5.11e-05 GCTACCTAGC AACAACAA CAGCACTTTT chr2R:22408454-22408574 24 5.11e-05 CGACCAGGAC AACAACAA AGCGCTGAGG chr2L:9454512-9454632 74 5.11e-05 CAGAAAGCCG AACAACAA CTGCCGGCAG chr2R:6573430-6573550 89 6.79e-05 ACAGCCCGCT AACAATAA AACTGCATAT chrX:19842399-19842519 88 6.79e-05 CAATATAATC AACAATAA ATCGGAACCG chr2R:13188031-13188151 28 8.44e-05 CTGGCAGTCA CAAAACAA ACAGAGAAGG chr2R:13042726-13042846 73 8.44e-05 AAAGAGTAGT CAAAACAA AGGGAAAAGC chr3R:8920272-8920392 19 1.01e-04 GCTGCAGCCA AAAAACAT TAGCTAGATA chr3R:15587615-15587735 98 1.01e-04 AATTGTATAA AAAAACAT CTAAGAAATA chr3L:13154169-13154289 90 1.01e-04 TCTGCCGTGG AAAAACAT TTTCCTATTA chr2L:15741485-15741605 5 1.01e-04 CTTG AAAAACAT AACTATACAA chr3R:11368740-11368860 60 1.19e-04 CGCACACTCA AAAAAAAA AATTGTTGAA chr3R:8690319-8690439 47 1.19e-04 CGCCAACCCC AAAAAAAA TTCCAAGGAT chrX:19842600-19842720 85 1.19e-04 GAGCAGGCCa aaaaaaaa gaaaaaaaaa chr2L:6234055-6234175 66 1.19e-04 GCAGCTGGTA AAAAAAAA GGGGGAAATG chr2L:9989941-9990061 97 1.19e-04 GAGCAGCTGG AAAAAAAA AGTGATCGGT chr3L:20295135-20295255 31 1.53e-04 CGGCCAGAGC CAAAATAA AGCCACGAGC chr3R:17605211-17605331 92 1.53e-04 TAAGATTTCT CAAAATAA TTATTCATGT chr3R:21825283-21825403 48 1.53e-04 TTGTAAATAA ATAAACAA GGAATTGTGA chr3R:6674680-6674800 69 1.53e-04 TTTGTTGATA CAAAATAA ACCTAAGGAT chr2L:19037388-19037508 14 1.53e-04 GAAAATAGAC ATAAACAA ATTTTCAGAT chr3R:16389306-16389426 1 1.53e-04 . ATAAACAA GGGTCGGGGG chr2R:20838658-20838778 20 1.53e-04 ATTGGGAAAG CAAAATAA CATTCGTTTA chr2L:17743093-17743213 6 2.02e-04 CGACA CACAACAA TGGCCAACAA chrX:3832350-3832470 89 2.02e-04 ACcaaaccaa acaaacaa acaggcagac chrX:825052-825172 60 2.02e-04 GCCGCTTGAG GAAAACAA GAGCACGGCA chr2R:8802067-8802187 44 2.02e-04 CATGTCAAGT GAAAACAA TCGTAAACCC chr2R:11398104-11398224 71 2.02e-04 TTAAAATGAT CACAACAA TCCCGAAAAA chr2R:13563675-13563795 22 2.02e-04 CTGGGATTAG ACAAACAA TGGATCGTGG chr3R:21640532-21640652 83 2.02e-04 AGCGCATGCC ACAAACAA GAAAAGGGGA chrX:7801172-7801292 78 2.19e-04 GTAAAATCAT AAAAATAT ACTCCTCAAT chr2L:18919634-18919754 48 2.52e-04 TCATTATATA ATAAATAA AAAGATCATT chr2L:7624325-7624445 103 2.52e-04 TTATAAGAGC AACAACAT TTTGTCCTTG chr3R:4996650-4996770 98 3.35e-04 CGAGCACTAA ATCAACAA TTACCAGATA chr2R:20600793-20600913 10 3.35e-04 TCAGGGTCT CACAATAA TGAGCGACAG chr3R:11350991-11351111 22 3.35e-04 AGGAGGCGCT ATCAACAA CCCCCTGCTT chr2L:18775420-18775540 46 3.52e-04 CAAACATTTT AATAACAA ATGAAAACAT chr2L:15457611-15457731 49 3.52e-04 CATCGGTAGG AATAACAA AGACAACGGC chr3R:26032398-26032518 1 3.84e-04 . accaacaa gaagcaacCA chr3R:26040032-26040152 76 3.84e-04 TTGTGAAAAA GACAACAA CACCGGCGTT chr2R:9714682-9714802 85 4.18e-04 CAAAATGTGC AAAAACAG AAAAACAGGC chr2R:9694785-9694905 33 4.18e-04 AATTTCCACG AAAAACAG AGAGCTATCC chr3L:13135043-13135163 82 4.18e-04 TTCACCTGTC AACAATAT TTCATGCCCA chr3R:26009895-26010015 32 4.18e-04 TCTCCCTTGA AACAATAT TGAAGAAACC chr2L:17222279-17222399 29 4.50e-04 GGTAAGCAAT ATCAATAA ACTAGGTCCT chrX:457996-458116 48 4.84e-04 AATCCGGCTA CAAAAAAA GATCCATTAC chr3R:22886876-22886996 16 4.84e-04 AAACGGTATT AATAATAA TTCAGGGCAA chr2L:12623205-12623325 37 5.33e-04 CGAAACAAAA GACAATAA ACCGGAGGGA chr2R:23573135-23573255 60 5.33e-04 ACGCGAAAAG GACAATAA CACTTGTTCA chr3L:19899393-19899513 33 5.50e-04 CTCACGGTTG AAAAATAG ATGACACACT chr2L:6240998-6241118 88 6.00e-04 AGAACCCAGC CCAAACAA TCCTGATGGC chr3R:19995589-19995709 19 6.00e-04 AAGGTCCGGG AAAATCAA TAGAAACAAA chr3L:5859204-5859324 40 6.00e-04 ACAGCTGCCA CCAAACAA GAGGACACAA chr3L:17463584-17463704 3 6.67e-04 CC ATAAAAAA GCGTAAGATA chr2L:7641012-7641132 1 7.31e-04 . GAAAACAT TACCAGGATG chr3R:17814652-17814772 104 7.31e-04 GCCACACGTG ACAAACAT GTGGAACAA chr2L:11338378-11338498 50 8.48e-04 GATTTTGTTA AAAATTAA TGCATTTTCT chr3R:18993823-18993943 110 9.78e-04 TCTTAAGCCG AAAAACCA GAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19870814-19870934 1.7e-05 14_[+4]_98 chr2R:14431110-14431230 1.7e-05 109_[+4]_3 chr2R:14433393-14433513 1.7e-05 11_[+4]_101 chr3R:26032624-26032744 1.7e-05 23_[+4]_89 chr3L:18102179-18102299 3.5e-05 54_[+4]_58 chr2L:20204763-20204883 3.5e-05 110_[+4]_2 chr3L:17937447-17937567 3.5e-05 8_[+4]_104 chr3R:8924174-8924294 3.5e-05 93_[+4]_19 chr3R:26026790-26026910 3.5e-05 64_[+4]_48 chr3L:15662619-15662739 3.5e-05 18_[+4]_94 chr2R:12970806-12970926 3.5e-05 27_[+4]_85 chr3L:14979408-14979528 3.5e-05 99_[+4]_13 chr3R:26023401-26023521 5.1e-05 66_[+4]_46 chr3R:16229044-16229164 5.1e-05 108_[+4]_4 chr3R:24270200-24270320 5.1e-05 30_[+4]_82 chr3L:3976587-3976707 5.1e-05 8_[+4]_104 chr2R:20602682-20602802 5.1e-05 57_[+4]_55 chr2L:15478354-15478474 5.1e-05 29_[+4]_83 chr2R:22408454-22408574 5.1e-05 23_[+4]_89 chr2L:9454512-9454632 5.1e-05 73_[+4]_39 chr2R:6573430-6573550 6.8e-05 88_[+4]_24 chrX:19842399-19842519 6.8e-05 87_[+4]_25 chr2R:13188031-13188151 8.4e-05 27_[+4]_85 chr2R:13042726-13042846 8.4e-05 72_[+4]_40 chr3R:8920272-8920392 0.0001 18_[+4]_94 chr3R:15587615-15587735 0.0001 97_[+4]_15 chr3L:13154169-13154289 0.0001 89_[+4]_23 chr2L:15741485-15741605 0.0001 4_[+4]_108 chr3R:11368740-11368860 0.00012 59_[+4]_53 chr3R:8690319-8690439 0.00012 46_[+4]_66 chrX:19842600-19842720 0.00012 84_[+4]_28 chr2L:6234055-6234175 0.00012 65_[+4]_47 chr2L:9989941-9990061 0.00012 96_[+4]_16 chr3L:20295135-20295255 0.00015 30_[+4]_82 chr3R:17605211-17605331 0.00015 91_[+4]_21 chr3R:21825283-21825403 0.00015 47_[+4]_65 chr3R:6674680-6674800 0.00015 68_[+4]_44 chr2L:19037388-19037508 0.00015 13_[+4]_99 chr3R:16389306-16389426 0.00015 [+4]_112 chr2R:20838658-20838778 0.00015 19_[+4]_93 chr2L:17743093-17743213 0.0002 5_[+4]_107 chrX:3832350-3832470 0.0002 88_[+4]_24 chrX:825052-825172 0.0002 59_[+4]_53 chr2R:8802067-8802187 0.0002 43_[+4]_69 chr2R:11398104-11398224 0.0002 70_[+4]_42 chr2R:13563675-13563795 0.0002 21_[+4]_91 chr3R:21640532-21640652 0.0002 82_[+4]_30 chrX:7801172-7801292 0.00022 77_[+4]_35 chr2L:18919634-18919754 0.00025 47_[+4]_65 chr2L:7624325-7624445 0.00025 102_[+4]_10 chr3R:4996650-4996770 0.00034 97_[+4]_15 chr2R:20600793-20600913 0.00034 9_[+4]_103 chr3R:11350991-11351111 0.00034 21_[+4]_91 chr2L:18775420-18775540 0.00035 45_[+4]_67 chr2L:15457611-15457731 0.00035 48_[+4]_64 chr3R:26032398-26032518 0.00038 [+4]_112 chr3R:26040032-26040152 0.00038 75_[+4]_37 chr2R:9714682-9714802 0.00042 84_[+4]_28 chr2R:9694785-9694905 0.00042 32_[+4]_80 chr3L:13135043-13135163 0.00042 81_[+4]_31 chr3R:26009895-26010015 0.00042 31_[+4]_81 chr2L:17222279-17222399 0.00045 28_[+4]_84 chrX:457996-458116 0.00048 47_[+4]_65 chr3R:22886876-22886996 0.00048 15_[+4]_97 chr2L:12623205-12623325 0.00053 36_[+4]_76 chr2R:23573135-23573255 0.00053 59_[+4]_53 chr3L:19899393-19899513 0.00055 32_[+4]_80 chr2L:6240998-6241118 0.0006 87_[+4]_25 chr3R:19995589-19995709 0.0006 18_[+4]_94 chr3L:5859204-5859324 0.0006 39_[+4]_73 chr3L:17463584-17463704 0.00067 2_[+4]_110 chr2L:7641012-7641132 0.00073 [+4]_112 chr3R:17814652-17814772 0.00073 103_[+4]_9 chr2L:11338378-11338498 0.00085 49_[+4]_63 chr3R:18993823-18993943 0.00098 109_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAYAA width=8 seqs=75 chr2R:19870814-19870934 ( 15) AAAAACAA 1 chr2R:14431110-14431230 ( 110) AAAAACAA 1 chr2R:14433393-14433513 ( 12) AAAAACAA 1 chr3R:26032624-26032744 ( 24) AAAAACAA 1 chr3L:18102179-18102299 ( 55) AAAAATAA 1 chr2L:20204763-20204883 ( 111) AAAAATAA 1 chr3L:17937447-17937567 ( 9) AAAAATAA 1 chr3R:8924174-8924294 ( 94) AAAAATAA 1 chr3R:26026790-26026910 ( 65) AAAAATAA 1 chr3L:15662619-15662739 ( 19) AAAAATAA 1 chr2R:12970806-12970926 ( 28) AAAAATAA 1 chr3L:14979408-14979528 ( 100) AAAAATAA 1 chr3R:26023401-26023521 ( 67) AACAACAA 1 chr3R:16229044-16229164 ( 109) AACAACAA 1 chr3R:24270200-24270320 ( 31) AACAACAA 1 chr3L:3976587-3976707 ( 9) AACAACAA 1 chr2R:20602682-20602802 ( 58) AACAACAA 1 chr2L:15478354-15478474 ( 30) AACAACAA 1 chr2R:22408454-22408574 ( 24) AACAACAA 1 chr2L:9454512-9454632 ( 74) AACAACAA 1 chr2R:6573430-6573550 ( 89) AACAATAA 1 chrX:19842399-19842519 ( 88) AACAATAA 1 chr2R:13188031-13188151 ( 28) CAAAACAA 1 chr2R:13042726-13042846 ( 73) CAAAACAA 1 chr3R:8920272-8920392 ( 19) AAAAACAT 1 chr3R:15587615-15587735 ( 98) AAAAACAT 1 chr3L:13154169-13154289 ( 90) AAAAACAT 1 chr2L:15741485-15741605 ( 5) AAAAACAT 1 chr3R:11368740-11368860 ( 60) AAAAAAAA 1 chr3R:8690319-8690439 ( 47) AAAAAAAA 1 chrX:19842600-19842720 ( 85) AAAAAAAA 1 chr2L:6234055-6234175 ( 66) AAAAAAAA 1 chr2L:9989941-9990061 ( 97) AAAAAAAA 1 chr3L:20295135-20295255 ( 31) CAAAATAA 1 chr3R:17605211-17605331 ( 92) CAAAATAA 1 chr3R:21825283-21825403 ( 48) ATAAACAA 1 chr3R:6674680-6674800 ( 69) CAAAATAA 1 chr2L:19037388-19037508 ( 14) ATAAACAA 1 chr3R:16389306-16389426 ( 1) ATAAACAA 1 chr2R:20838658-20838778 ( 20) CAAAATAA 1 chr2L:17743093-17743213 ( 6) CACAACAA 1 chrX:3832350-3832470 ( 89) ACAAACAA 1 chrX:825052-825172 ( 60) GAAAACAA 1 chr2R:8802067-8802187 ( 44) GAAAACAA 1 chr2R:11398104-11398224 ( 71) CACAACAA 1 chr2R:13563675-13563795 ( 22) ACAAACAA 1 chr3R:21640532-21640652 ( 83) ACAAACAA 1 chrX:7801172-7801292 ( 78) AAAAATAT 1 chr2L:18919634-18919754 ( 48) ATAAATAA 1 chr2L:7624325-7624445 ( 103) AACAACAT 1 chr3R:4996650-4996770 ( 98) ATCAACAA 1 chr2R:20600793-20600913 ( 10) CACAATAA 1 chr3R:11350991-11351111 ( 22) ATCAACAA 1 chr2L:18775420-18775540 ( 46) AATAACAA 1 chr2L:15457611-15457731 ( 49) AATAACAA 1 chr3R:26032398-26032518 ( 1) ACCAACAA 1 chr3R:26040032-26040152 ( 76) GACAACAA 1 chr2R:9714682-9714802 ( 85) AAAAACAG 1 chr2R:9694785-9694905 ( 33) AAAAACAG 1 chr3L:13135043-13135163 ( 82) AACAATAT 1 chr3R:26009895-26010015 ( 32) AACAATAT 1 chr2L:17222279-17222399 ( 29) ATCAATAA 1 chrX:457996-458116 ( 48) CAAAAAAA 1 chr3R:22886876-22886996 ( 16) AATAATAA 1 chr2L:12623205-12623325 ( 37) GACAATAA 1 chr2R:23573135-23573255 ( 60) GACAATAA 1 chr3L:19899393-19899513 ( 33) AAAAATAG 1 chr2L:6240998-6241118 ( 88) CCAAACAA 1 chr3R:19995589-19995709 ( 19) AAAATCAA 1 chr3L:5859204-5859324 ( 40) CCAAACAA 1 chr3L:17463584-17463704 ( 3) ATAAAAAA 1 chr2L:7641012-7641132 ( 1) GAAAACAT 1 chr3R:17814652-17814772 ( 104) ACAAACAT 1 chr2L:11338378-11338498 ( 50) AAAATTAA 1 chr3R:18993823-18993943 ( 110) AAAAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.44048 E= 1.5e+004 157 -62 -165 -1287 165 -139 -1287 -122 136 32 -1287 -263 197 -1287 -1287 -1287 193 -1287 -1287 -322 -145 123 -1287 42 195 -420 -1287 -1287 170 -1287 -265 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 1.5e+004 0.760000 0.160000 0.080000 0.000000 0.800000 0.093333 0.000000 0.106667 0.653333 0.306667 0.000000 0.040000 1.000000 0.000000 0.000000 0.000000 0.973333 0.000000 0.000000 0.026667 0.093333 0.573333 0.000000 0.333333 0.986667 0.013333 0.000000 0.000000 0.826667 0.000000 0.040000 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAYAA MEME-4 regular expression -------------------------------------------------------------------------------- AA[AC]AA[CT]AA -------------------------------------------------------------------------------- Time 25.25 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKYKTT MEME-5 width = 8 sites = 48 llr = 389 E-value = 8.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C ::::4::: probability G :::4:33: matrix T aaa6657a bits 2.0 *** * 1.8 *** * 1.6 *** * 1.4 *** * Relative 1.2 *** * Entropy 1.0 ***** ** (11.7 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus GCGG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18296623-18296743 96 1.48e-05 GATTTCTCCT TTTTTTTT CGACGTGATC chr3L:1431369-1431489 41 1.48e-05 TTCGTTATCC TTTTTTTT GAGTGGCTGC chr2R:18202740-18202860 30 2.97e-05 TGTACTGCTG TTTGTTTT CGTATATTTG chr2L:21789637-21789757 40 2.97e-05 CACATTGTTG TTTGTTTT GTGTCCCAGT chr3R:19108268-19108388 3 2.97e-05 AA TTTGTTTT CAATCAGTAT chr3R:8920272-8920392 44 2.97e-05 ATACATATAT TTTGTTTT GGTAATTAAC chr2R:18670341-18670461 96 2.97e-05 CACGCTTCGC TTTGTTTT CGGTGGATGG chr3L:17937447-17937567 90 4.42e-05 TACCAtctct ttttcttt ctctttctcc chr3R:30762358-30762478 78 4.42e-05 TTCCAGCTGC TTTTCTTT TTGTGAATGA chr3R:10355090-10355210 41 4.42e-05 cggtcttctg ttttcttt cttcaggctc chr2R:13570874-13570994 20 4.42e-05 CCAACCACGA TTTTCTTT AGCCTGTGCC chr3R:21644328-21644448 57 4.42e-05 CTCTTGTTGT TTTTCTTT TGAGGCCGGG chr3R:24270200-24270320 12 7.38e-05 TATCTTTGAG TTTGCTTT AAAAACACAA chr3R:6674680-6674800 57 7.38e-05 ATAAAATAGC TTTTTGTT GATACAAAAT chr3L:676035-676155 101 7.38e-05 CTGCAATTGG TTTTTGTT CCACTGTTTA chr3L:12090313-12090433 33 7.38e-05 gttgctgtta tttttgtt gttgctgcag chr3R:22780534-22780654 45 7.38e-05 ATGTTCTGTG TTTGCTTT GCTTGCAGCA chr3R:9024950-9025070 43 7.38e-05 GATCAATGTG TTTGCTTT GGAGCGGCAT chr3R:26028193-26028313 80 1.19e-04 GTCTGTGTCT TTTTTTGT CTCCGGTCCT chr2L:17263458-17263578 26 1.19e-04 GGCGCTGTGT TTTGTGTT CCGTCGGTTT chr2L:12661519-12661639 35 1.19e-04 CAGATTTCAT TTTTTATT GGCAAAGGGG chr2R:13569701-13569821 14 1.19e-04 AATGCATTTA TTTTTATT CCCATGCAAC chr3R:26002603-26002723 61 1.19e-04 ACACCTGCCC TTTTTtgt atgtgtgtgt chr3R:29309403-29309523 20 1.19e-04 TCCTAGAATA TTTTTATT TTAATTGTTA chrX:7574033-7574153 72 1.19e-04 CCCCGTTGAG TTTGTGTT TTCCTCCTGA chr3R:26025448-26025568 69 1.19e-04 CCTTCTTCTT TTTTTATT TGTGGATCGT chr2L:17262418-17262538 49 1.64e-04 GCGTGTCCAG TTTGTTGT TGTTTGCTTA chr3R:17605211-17605331 75 1.64e-04 TTCCACAAGT TTTGTATT AAGATTTCTC chr3L:6106869-6106989 71 1.64e-04 TTGTTTGCTG TTTGTTGT CATTGGCTCT chr3R:26010707-26010827 49 1.64e-04 TCTGTCTCTG TTTGTATT CCCCTCCCTG chr2R:25204997-25205117 8 1.64e-04 CACATTC TTTGTATT GTCGCGACCA chr2R:14433393-14433513 58 1.64e-04 GCGTTTCGAT TTTTCGTT TTTTACCCAT chr2R:25198569-25198689 43 1.64e-04 CCCGATTTGG TTTTCGTT TGAGTCCCTC chrX:4563096-4563216 2 1.64e-04 G TTTTCGTT TATTTACGAG chr3R:8924174-8924294 113 2.08e-04 ATCATGTTCA TTTTCTGT chrX:460644-460764 109 2.08e-04 TTCCGttggg tttgcgtt ttag chr2L:17564714-17564834 17 2.08e-04 TTGCATGCAA TTTTCATT GTCGCCGCTT chr2L:4352030-4352150 48 2.08e-04 CTTGCCAGCA TTTTCTGT GTGTGTGTGT chr3L:321592-321712 3 2.08e-04 TT TTTTCTGT TCGTGGGCGC chr2R:13561069-13561189 23 2.53e-04 ACCTGCTCCA TTTGCTGT TGACCTATTG chr2L:9989701-9989821 27 2.53e-04 ttatGGCCTT TTTTTGGT GGTACGAAGA chrX:19842399-19842519 4 2.53e-04 CTT TTTGCTGT TGTGTGGCGC chr3L:47960-48080 109 2.53e-04 AAACGGCTGG TTTGCATT GTAA chr2L:11338378-11338498 24 2.83e-04 CATAGATTAT TTTTTAGT AATGTAATGA chr2L:12549080-12549200 51 2.83e-04 CCCTAAGTTG TTTGTGGT ATTGGACTTG chr2R:18666232-18666352 23 2.83e-04 GGTGGACAAG TTTGTGGT CTGTGCCCCT chr2L:19037188-19037308 86 2.83e-04 TGAGTGTTTA TTTTTAGT TACACGGGTG chr3L:17463584-17463704 77 3.13e-04 GTAGTTTGGG TTTTCGGT TTTAAAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18296623-18296743 1.5e-05 95_[+5]_17 chr3L:1431369-1431489 1.5e-05 40_[+5]_72 chr2R:18202740-18202860 3e-05 29_[+5]_83 chr2L:21789637-21789757 3e-05 39_[+5]_73 chr3R:19108268-19108388 3e-05 2_[+5]_110 chr3R:8920272-8920392 3e-05 43_[+5]_69 chr2R:18670341-18670461 3e-05 95_[+5]_17 chr3L:17937447-17937567 4.4e-05 89_[+5]_23 chr3R:30762358-30762478 4.4e-05 77_[+5]_35 chr3R:10355090-10355210 4.4e-05 40_[+5]_72 chr2R:13570874-13570994 4.4e-05 19_[+5]_93 chr3R:21644328-21644448 4.4e-05 56_[+5]_56 chr3R:24270200-24270320 7.4e-05 11_[+5]_101 chr3R:6674680-6674800 7.4e-05 56_[+5]_56 chr3L:676035-676155 7.4e-05 100_[+5]_12 chr3L:12090313-12090433 7.4e-05 32_[+5]_80 chr3R:22780534-22780654 7.4e-05 44_[+5]_68 chr3R:9024950-9025070 7.4e-05 42_[+5]_70 chr3R:26028193-26028313 0.00012 79_[+5]_33 chr2L:17263458-17263578 0.00012 25_[+5]_87 chr2L:12661519-12661639 0.00012 34_[+5]_78 chr2R:13569701-13569821 0.00012 13_[+5]_99 chr3R:26002603-26002723 0.00012 60_[+5]_52 chr3R:29309403-29309523 0.00012 19_[+5]_93 chrX:7574033-7574153 0.00012 71_[+5]_41 chr3R:26025448-26025568 0.00012 68_[+5]_44 chr2L:17262418-17262538 0.00016 48_[+5]_64 chr3R:17605211-17605331 0.00016 74_[+5]_38 chr3L:6106869-6106989 0.00016 70_[+5]_42 chr3R:26010707-26010827 0.00016 48_[+5]_64 chr2R:25204997-25205117 0.00016 7_[+5]_105 chr2R:14433393-14433513 0.00016 57_[+5]_55 chr2R:25198569-25198689 0.00016 42_[+5]_70 chrX:4563096-4563216 0.00016 1_[+5]_111 chr3R:8924174-8924294 0.00021 112_[+5] chrX:460644-460764 0.00021 108_[+5]_4 chr2L:17564714-17564834 0.00021 16_[+5]_96 chr2L:4352030-4352150 0.00021 47_[+5]_65 chr3L:321592-321712 0.00021 2_[+5]_110 chr2R:13561069-13561189 0.00025 22_[+5]_90 chr2L:9989701-9989821 0.00025 26_[+5]_86 chrX:19842399-19842519 0.00025 3_[+5]_109 chr3L:47960-48080 0.00025 108_[+5]_4 chr2L:11338378-11338498 0.00028 23_[+5]_89 chr2L:12549080-12549200 0.00028 50_[+5]_62 chr2R:18666232-18666352 0.00028 22_[+5]_90 chr2L:19037188-19037308 0.00028 85_[+5]_27 chr3L:17463584-17463704 0.00031 76_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKYKTT width=8 seqs=48 chr3L:18296623-18296743 ( 96) TTTTTTTT 1 chr3L:1431369-1431489 ( 41) TTTTTTTT 1 chr2R:18202740-18202860 ( 30) TTTGTTTT 1 chr2L:21789637-21789757 ( 40) TTTGTTTT 1 chr3R:19108268-19108388 ( 3) TTTGTTTT 1 chr3R:8920272-8920392 ( 44) TTTGTTTT 1 chr2R:18670341-18670461 ( 96) TTTGTTTT 1 chr3L:17937447-17937567 ( 90) TTTTCTTT 1 chr3R:30762358-30762478 ( 78) TTTTCTTT 1 chr3R:10355090-10355210 ( 41) TTTTCTTT 1 chr2R:13570874-13570994 ( 20) TTTTCTTT 1 chr3R:21644328-21644448 ( 57) TTTTCTTT 1 chr3R:24270200-24270320 ( 12) TTTGCTTT 1 chr3R:6674680-6674800 ( 57) TTTTTGTT 1 chr3L:676035-676155 ( 101) TTTTTGTT 1 chr3L:12090313-12090433 ( 33) TTTTTGTT 1 chr3R:22780534-22780654 ( 45) TTTGCTTT 1 chr3R:9024950-9025070 ( 43) TTTGCTTT 1 chr3R:26028193-26028313 ( 80) TTTTTTGT 1 chr2L:17263458-17263578 ( 26) TTTGTGTT 1 chr2L:12661519-12661639 ( 35) TTTTTATT 1 chr2R:13569701-13569821 ( 14) TTTTTATT 1 chr3R:26002603-26002723 ( 61) TTTTTTGT 1 chr3R:29309403-29309523 ( 20) TTTTTATT 1 chrX:7574033-7574153 ( 72) TTTGTGTT 1 chr3R:26025448-26025568 ( 69) TTTTTATT 1 chr2L:17262418-17262538 ( 49) TTTGTTGT 1 chr3R:17605211-17605331 ( 75) TTTGTATT 1 chr3L:6106869-6106989 ( 71) TTTGTTGT 1 chr3R:26010707-26010827 ( 49) TTTGTATT 1 chr2R:25204997-25205117 ( 8) TTTGTATT 1 chr2R:14433393-14433513 ( 58) TTTTCGTT 1 chr2R:25198569-25198689 ( 43) TTTTCGTT 1 chrX:4563096-4563216 ( 2) TTTTCGTT 1 chr3R:8924174-8924294 ( 113) TTTTCTGT 1 chrX:460644-460764 ( 109) TTTGCGTT 1 chr2L:17564714-17564834 ( 17) TTTTCATT 1 chr2L:4352030-4352150 ( 48) TTTTCTGT 1 chr3L:321592-321712 ( 3) TTTTCTGT 1 chr2R:13561069-13561189 ( 23) TTTGCTGT 1 chr2L:9989701-9989821 ( 27) TTTTTGGT 1 chrX:19842399-19842519 ( 4) TTTGCTGT 1 chr3L:47960-48080 ( 109) TTTGCATT 1 chr2L:11338378-11338498 ( 24) TTTTTAGT 1 chr2L:12549080-12549200 ( 51) TTTGTGGT 1 chr2R:18666232-18666352 ( 23) TTTGTGGT 1 chr2L:19037188-19037308 ( 86) TTTTTAGT 1 chr3L:17463584-17463704 ( 77) TTTTCGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2994 E= 8.0e-001 -1223 -1223 -1223 201 -1223 -1223 -1223 201 -1223 -1223 -1223 201 -1223 -1223 80 118 -1223 77 -1223 123 -15 -1223 11 101 -1223 -1223 32 147 -1223 -1223 -1223 201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 8.0e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.437500 0.562500 0.000000 0.416667 0.000000 0.583333 0.229167 0.000000 0.270833 0.500000 0.000000 0.000000 0.312500 0.687500 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYKTT MEME-5 regular expression -------------------------------------------------------------------------------- TTT[TG][TC][TGA][TG]T -------------------------------------------------------------------------------- Time 30.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5859204-5859324 4.14e-02 29_[+1(2.98e-05)]_83 chrX:4563096-4563216 1.10e-03 45_[+3(2.93e-05)]_67 chr3R:8682138-8682258 2.17e-02 10_[+3(2.93e-05)]_102 chr3L:47960-48080 7.18e-03 23_[+1(1.48e-05)]_89 chr3L:14979408-14979528 9.51e-03 99_[+4(3.46e-05)]_13 chr3R:11350991-11351111 5.33e-04 45_[+2(2.97e-05)]_67 chr2R:14429547-14429667 9.93e-04 32_[+2(1.45e-05)]_7_[+1(2.98e-05)]_\ 65 chr2R:8245235-8245355 1.63e-03 71_[+2(1.45e-05)]_30_[+1(2.98e-05)]_\ 3 chr3R:25999080-25999200 1.54e-01 120 chr2R:23886706-23886826 8.02e-02 120 chr3R:25629551-25629671 7.03e-03 26_[+1(1.48e-05)]_78_[+1(1.48e-05)] chr3R:30474837-30474957 2.79e-03 51_[+1(5.92e-05)]_61 chr3R:25596491-25596611 7.72e-03 34_[+1(1.48e-05)]_36_[+1(5.92e-05)]_\ 34 chrX:19842399-19842519 8.64e-06 17_[+3(2.93e-05)]_33_[+1(1.48e-05)]_\ 21_[+4(6.79e-05)]_25 chr2R:18670341-18670461 3.61e-03 95_[+5(2.97e-05)]_17 chr2R:25198569-25198689 1.79e-02 75_[+1(2.98e-05)]_37 chr3R:18993823-18993943 6.24e-01 120 chr3L:1431369-1431489 1.19e-03 40_[+5(1.48e-05)]_8_[+3(2.93e-05)]_\ 56 chr2L:15427083-15427203 1.84e-01 120 chr2R:13194982-13195102 4.86e-01 120 chr3R:29266853-29266973 1.55e-01 120 chr2L:9454512-9454632 2.86e-02 73_[+4(5.11e-05)]_39 chr2R:16278691-16278811 3.17e-02 120 chr3R:16528418-16528538 3.38e-02 120 chr3R:26025448-26025568 5.20e-03 19_[+2(7.39e-05)]_93 chr2L:10553810-10553930 5.36e-02 39_[+2(2.97e-05)]_73 chr3L:16049229-16049349 4.87e-03 15_[+1(1.48e-05)]_97 chr2L:19037188-19037308 3.65e-03 45_[+3(2.93e-05)]_67 chr3L:1360220-1360340 1.66e-02 101_[+3(8.89e-05)]_11 chr3L:2853059-2853179 1.21e-02 85_[+2(1.45e-05)]_27 chr2L:17222279-17222399 2.06e-01 120 chr3R:26009895-26010015 5.58e-01 120 chr3L:3980182-3980302 1.22e-02 70_[+1(2.98e-05)]_42 chr2L:12457815-12457935 3.41e-01 5_[+1(5.92e-05)]_107 chr2L:15327185-15327305 2.74e-01 120 chr2R:20600793-20600913 1.91e-03 23_[+1(2.98e-05)]_72_[+3(8.89e-05)]_\ 9 chr3R:30476509-30476629 4.18e-01 120 chr2L:9989701-9989821 9.02e-02 120 chr2L:9989941-9990061 1.80e-02 120 chr2R:22408454-22408574 9.16e-05 6_[+2(5.92e-05)]_9_[+4(5.11e-05)]_\ 28_[+1(1.48e-05)]_53 chr3L:297203-297323 3.40e-01 120 chr2R:18672256-18672376 1.66e-02 22_[+1(1.48e-05)]_90 chr3R:26040032-26040152 8.52e-03 54_[+1(5.92e-05)]_58 chr3R:21640532-21640652 5.41e-02 120 chr2L:12622080-12622200 2.62e-01 120 chr3L:15847309-15847429 1.10e-02 120 chr3R:16552401-16552521 8.24e-02 82_[+3(8.89e-05)]_30 chr3L:13135043-13135163 2.49e-03 30_[+3(2.93e-05)]_82 chr2R:9694785-9694905 3.85e-02 120 chr3R:10284275-10284395 1.01e-01 34_[+2(8.91e-05)]_78 chr2L:17264250-17264370 3.98e-01 120 chr3R:26032624-26032744 6.33e-03 23_[+4(1.72e-05)]_89 chr3L:899306-899426 9.63e-02 112_[+2(8.91e-05)] chr2L:15457611-15457731 7.35e-02 120 chr3L:17463584-17463704 3.34e-03 120 chr2R:17476198-17476318 8.78e-03 22_[+1(5.92e-05)]_90 chr3R:9024950-9025070 4.14e-03 42_[+5(7.38e-05)]_13_[+1(5.92e-05)]_\ 49 chr2R:20838658-20838778 4.72e-01 120 chr3L:5982015-5982135 1.52e-02 120 chr3R:26032398-26032518 3.17e-02 65_[+1(2.98e-05)]_47 chrX:7574033-7574153 3.54e-01 120 chr3R:19319258-19319378 2.02e-04 71_[+3(2.93e-05)]_41 chr3R:26027992-26028112 1.54e-02 120 chr2L:15470876-15470996 3.63e-01 120 chr2L:15741485-15741605 2.88e-01 120 chr3R:29309403-29309523 1.21e-03 50_[+2(2.97e-05)]_62 chrX:457147-457267 2.65e-01 120 chr2R:18674825-18674945 2.04e-02 120 chr3R:25999408-25999528 6.62e-02 67_[+1(5.92e-05)]_45 chr2L:15425784-15425904 7.74e-02 120 chr2L:6204260-6204380 1.14e-01 120 chr3R:26034953-26035073 8.76e-02 120 chr2L:18775420-18775540 6.71e-04 90_[+2(5.92e-05)]_22 chr3R:31606533-31606653 5.43e-03 54_[+1(1.48e-05)]_58 chr2R:13567711-13567831 4.03e-02 120 chr2R:12970806-12970926 5.41e-03 27_[+4(3.46e-05)]_43_[+2(5.92e-05)]_\ 34 chr3R:26002603-26002723 1.22e-03 105_[+3(8.89e-05)]_7 chr2L:6234055-6234175 2.26e-03 49_[+2(1.45e-05)]_63 chr2L:7624325-7624445 2.13e-01 120 chr2R:11794176-11794296 3.53e-03 8_[+1(1.48e-05)]_35_[+2(2.97e-05)]_\ 61 chr2R:12776163-12776283 2.11e-01 120 chr3L:5653699-5653819 5.25e-02 120 chr3R:17814652-17814772 1.72e-01 120 chr2R:18666232-18666352 5.30e-02 120 chr3R:9027193-9027313 1.31e-02 65_[+3(8.89e-05)]_47 chr3R:26039363-26039483 3.02e-01 120 chr3R:18234888-18235008 2.86e-02 35_[+2(5.92e-05)]_77 chr3R:29310454-29310574 6.16e-03 80_[+2(2.97e-05)]_32 chr2L:15442002-15442122 5.22e-01 120 chr3R:19995589-19995709 5.57e-02 120 chr3R:9024149-9024269 1.96e-01 120 chr2R:13563675-13563795 2.41e-02 120 chr3R:26030616-26030736 4.15e-02 120 chr2R:24276990-24277110 1.27e-01 31_[+1(5.92e-05)]_81 chr3R:25636745-25636865 4.60e-01 120 chrX:451216-451336 6.35e-02 26_[+1(1.48e-05)]_86 chr2R:11398104-11398224 5.21e-02 120 chr2L:17740681-17740801 2.74e-02 109_[+1(2.98e-05)]_3 chr2R:13569701-13569821 4.63e-02 120 chr3R:21644328-21644448 1.71e-04 56_[+5(4.42e-05)]_47_[+3(8.89e-05)]_\ 1 chr3R:19344080-19344200 6.90e-03 9_[+2(7.39e-05)]_56_[+1(5.92e-05)]_\ 39 chr2L:10608811-10608931 1.20e-01 120 chr3L:6104718-6104838 3.22e-01 120 chrX:19842600-19842720 6.25e-03 22_[+1(5.92e-05)]_90 chr2R:11401103-11401223 1.11e-02 43_[+2(5.92e-05)]_69 chr2R:20846160-20846280 3.12e-01 120 chr2L:12661519-12661639 2.54e-01 120 chr2R:13042726-13042846 2.40e-02 72_[+4(8.44e-05)]_21_[+3(8.89e-05)]_\ 11 chr3L:321592-321712 1.91e-02 120 chr2R:7417080-7417200 1.51e-02 77_[+3(2.93e-05)]_35 chr3L:15746378-15746498 4.73e-02 120 chr3L:20789442-20789562 1.87e-02 111_[+2(5.92e-05)]_1 chr3R:14597442-14597562 1.62e-03 21_[+4(1.72e-05)]_58_[+1(1.48e-05)]_\ 25 chr3R:29269132-29269252 6.53e-03 55_[+2(7.39e-05)]_57 chr2R:25212956-25213076 1.17e-01 120 chr2R:10537588-10537708 9.50e-02 21_[+2(1.45e-05)]_91 chr2R:6595892-6596012 2.43e-03 16_[+2(2.97e-05)]_33_[+3(2.93e-05)]_\ 55 chr2R:13570874-13570994 2.96e-03 19_[+5(4.42e-05)]_93 chr2L:14265180-14265300 2.32e-01 120 chr3R:26035159-26035279 5.26e-01 120 chr2R:10551856-10551976 8.00e-03 120 chr2L:9592869-9592989 6.80e-02 120 chr2L:4352030-4352150 9.86e-02 120 chr3L:15662619-15662739 3.03e-03 18_[+4(3.46e-05)]_50_[+4(5.11e-05)]_\ 36 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chr3L:19899393-19899513 8.26e-02 120 chr3R:26010707-26010827 5.83e-02 120 chr2L:3555830-3555950 8.93e-01 120 chr2L:12549080-12549200 3.23e-01 120 chr3R:8924174-8924294 8.76e-03 93_[+4(3.46e-05)]_19 chr3R:30762358-30762478 1.00e-03 77_[+5(4.42e-05)]_35 chr3L:905193-905313 4.02e-01 120 chr2L:11470119-11470239 6.87e-01 120 chr3L:16047209-16047329 1.06e-02 99_[+2(5.92e-05)]_3_[+3(8.89e-05)]_\ 2 chr2R:19870814-19870934 7.33e-03 14_[+4(1.72e-05)]_66_[+2(5.92e-05)]_\ 24 chr2L:22037044-22037164 6.21e-02 120 chr3R:8920272-8920392 7.19e-03 43_[+5(2.97e-05)]_69 chr3L:6106869-6106989 1.90e-01 120 chrX:2987387-2987507 1.01e-01 120 chr3L:3976587-3976707 2.47e-03 8_[+4(5.11e-05)]_104 chr3R:17605211-17605331 2.67e-02 120 chr2R:17476400-17476520 4.99e-01 120 chr3R:5109999-5110119 5.75e-02 103_[+3(8.89e-05)]_9 chr3L:17937447-17937567 9.16e-03 8_[+4(3.46e-05)]_31_[+5(7.38e-05)]_\ 34_[+5(4.42e-05)]_23 chr3L:18224742-18224862 2.56e-01 120 chr2L:17262418-17262538 1.79e-02 120 chr2L:20204763-20204883 2.42e-01 75_[+4(8.44e-05)]_27_[+4(3.46e-05)]_\ 2 chr3L:17653236-17653356 1.42e-02 58_[+1(2.98e-05)]_54 chr3L:15031865-15031985 1.48e-02 71_[+3(8.89e-05)]_[+3(8.89e-05)]_33 chr2R:24280469-24280589 4.07e-01 120 chr3R:4996650-4996770 3.12e-01 120 chr3L:17033442-17033562 7.56e-01 120 chr3R:8277934-8278054 7.30e-01 120 chr3L:18296623-18296743 1.34e-02 94_[+5(1.48e-05)]_18 chr3R:24270200-24270320 1.07e-03 11_[+5(7.38e-05)]_8_[+4(5.11e-05)]_\ 85 chr3L:12506199-12506319 3.42e-01 120 chr2L:15324215-15324335 6.41e-02 120 chr3L:1431576-1431696 1.29e-02 120 chr2R:24275505-24275625 1.84e-01 120 chr3L:782608-782728 6.07e-01 120 chr3R:22886876-22886996 3.58e-01 120 chr3R:6765032-6765152 5.88e-02 120 chr2L:13878848-13878968 5.47e-02 12_[+1(1.48e-05)]_26_[+1(2.98e-05)]_\ 66 chr3R:16229044-16229164 4.27e-03 26_[+4(6.79e-05)]_71_[+4(5.11e-05)]_\ 7 chr2L:15319923-15320043 3.02e-02 120 chr3L:14119030-14119150 2.06e-01 120 chr2L:8857852-8857972 8.35e-02 120 chr3R:19108268-19108388 4.90e-02 2_[+5(2.97e-05)]_110 chr2L:21789637-21789757 5.47e-03 39_[+5(2.97e-05)]_37_[+3(2.93e-05)]_\ 28 chr3R:26028193-26028313 1.82e-02 120 chr2R:6586008-6586128 1.43e-01 59_[+2(8.91e-05)]_53 chr3L:15672934-15673054 3.09e-01 120 chr2R:21712342-21712462 3.43e-01 120 chrX:457996-458116 2.42e-01 120 chr3R:26002803-26002923 8.24e-02 120 chr2L:11338378-11338498 2.71e-01 120 chr2L:2461537-2461657 9.43e-02 120 chr3R:11368740-11368860 1.01e-01 120 chr3L:20295135-20295255 7.59e-03 58_[+2(2.97e-05)]_54 chr3L:908741-908861 2.26e-02 120 chr2R:6573430-6573550 2.38e-02 88_[+4(6.79e-05)]_24 chr3L:18102179-18102299 6.13e-02 54_[+4(3.46e-05)]_58 chr3R:26023401-26023521 1.62e-01 66_[+4(5.11e-05)]_38_[+4(6.79e-05)] chr3R:15584718-15584838 3.75e-01 120 chr3R:30475040-30475160 8.91e-01 120 chr2R:18202740-18202860 5.50e-02 29_[+5(2.97e-05)]_83 chr2R:13561069-13561189 3.14e-03 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************