******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm7-HLH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:2393200-2393320 1.0000 120 chr2R:12729305-12729425 1.0000 120 chr3R:19467566-19467686 1.0000 120 chr2R:6464951-6465071 1.0000 120 chr3R:29757393-29757513 1.0000 120 chr2L:9775336-9775456 1.0000 120 chr3L:16429649-16429769 1.0000 120 chr2R:20163776-20163896 1.0000 120 chr2R:22200021-22200141 1.0000 120 chr3R:27421886-27422006 1.0000 120 chr3L:11107581-11107701 1.0000 120 chr3L:10741309-10741429 1.0000 120 chr3R:16558876-16558996 1.0000 120 chr3R:29936391-29936511 1.0000 120 chr2R:10304310-10304430 1.0000 120 chr3R:6182613-6182733 1.0000 120 chr2L:19200350-19200470 1.0000 120 chr3L:11297338-11297458 1.0000 120 chrX:362243-362363 1.0000 120 chr3L:16544409-16544529 1.0000 120 chr3R:14012960-14013080 1.0000 120 chr3R:26539327-26539447 1.0000 120 chr2R:14073624-14073744 1.0000 120 chr2R:21042815-21042935 1.0000 120 chr3R:8784954-8785074 1.0000 120 chr2L:10061435-10061555 1.0000 120 chr2R:21648159-21648279 1.0000 120 chr3L:19013910-19014030 1.0000 120 chr3L:11355619-11355739 1.0000 120 chr2R:15530014-15530134 1.0000 120 chr3L:4233151-4233271 1.0000 120 chr2L:14587158-14587278 1.0000 120 chr2R:9402784-9402904 1.0000 120 chr3L:21496604-21496724 1.0000 120 chr3L:1880876-1880996 1.0000 120 chr2L:14395041-14395161 1.0000 120 chr3L:6861350-6861470 1.0000 120 chr3R:10150700-10150820 1.0000 120 chr2L:2494679-2494799 1.0000 120 chr3R:21855588-21855708 1.0000 120 chr2L:20390188-20390308 1.0000 120 chr3R:20273696-20273816 1.0000 120 chr3R:26034896-26035016 1.0000 120 chrX:22837507-22837627 1.0000 120 chr2L:117887-118007 1.0000 120 chr3R:20560960-20561080 1.0000 120 chr3R:23181092-23181212 1.0000 120 chr3L:8347513-8347633 1.0000 120 chrX:12889101-12889221 1.0000 120 chr2L:1362384-1362504 1.0000 120 chr2L:19998302-19998422 1.0000 120 chr2R:9546537-9546657 1.0000 120 chrX:10044024-10044144 1.0000 120 chr2L:17388167-17388287 1.0000 120 chr2R:15754371-15754491 1.0000 120 chr3R:18804546-18804666 1.0000 120 chrX:11466950-11467070 1.0000 120 chr2L:4838614-4838734 1.0000 120 chr3R:16282164-16282284 1.0000 120 chr2R:19971453-19971573 1.0000 120 chr2L:21308515-21308635 1.0000 120 chr2R:20063371-20063491 1.0000 120 chr3R:30802926-30803046 1.0000 120 chr2R:18952261-18952381 1.0000 120 chr3L:8584224-8584344 1.0000 120 chrX:9251425-9251545 1.0000 120 chrX:10067653-10067773 1.0000 120 chr2R:19874699-19874819 1.0000 120 chr2R:9144157-9144277 1.0000 120 chr3R:24348216-24348336 1.0000 120 chr3L:137001-137121 1.0000 120 chr3L:4521940-4522060 1.0000 120 chrX:11653176-11653296 1.0000 120 chr2R:11792806-11792926 1.0000 120 chr3L:4101726-4101846 1.0000 120 chr2R:21909938-21910058 1.0000 120 chr3L:2486579-2486699 1.0000 120 chr3R:9889088-9889208 1.0000 120 chr3R:12222259-12222379 1.0000 120 chrX:2294638-2294758 1.0000 120 chrX:772827-772947 1.0000 120 chrX:20506063-20506183 1.0000 120 chr3L:22163913-22164033 1.0000 120 chr3L:2572180-2572300 1.0000 120 chr2R:21076861-21076981 1.0000 120 chr2R:21851756-21851876 1.0000 120 chrX:12014812-12014932 1.0000 120 chrX:19697732-19697852 1.0000 120 chr3L:20539638-20539758 1.0000 120 chr2L:6283463-6283583 1.0000 120 chr2R:15354501-15354621 1.0000 120 chr2R:16551952-16552072 1.0000 120 chr3L:15626197-15626317 1.0000 120 chr3L:775103-775223 1.0000 120 chr2R:9309687-9309807 1.0000 120 chr2L:8610961-8611081 1.0000 120 chrX:13253172-13253292 1.0000 120 chr3L:18398155-18398275 1.0000 120 chr2R:12475909-12476029 1.0000 120 chr3L:8925791-8925911 1.0000 120 chr2R:10303690-10303810 1.0000 120 chr2R:13261815-13261935 1.0000 120 chrX:3188547-3188667 1.0000 120 chr3L:10745748-10745868 1.0000 120 chr2L:5303751-5303871 1.0000 120 chr3R:26937645-26937765 1.0000 120 chr3L:12090314-12090434 1.0000 120 chr2R:8150710-8150830 1.0000 120 chr3R:10648980-10649100 1.0000 120 chr3R:14002123-14002243 1.0000 120 chrX:15591824-15591944 1.0000 120 chr2R:7063831-7063951 1.0000 120 chrX:6059273-6059393 1.0000 120 chr3R:23445394-23445514 1.0000 120 chrX:6179537-6179657 1.0000 120 chr2L:13512312-13512432 1.0000 120 chr2L:7149033-7149153 1.0000 120 chr2L:12369683-12369803 1.0000 120 chr3L:15977730-15977850 1.0000 120 chr3L:14194310-14194430 1.0000 120 chr3L:15532680-15532800 1.0000 120 chr2L:5799615-5799735 1.0000 120 chr3L:772361-772481 1.0000 120 chr3R:19011067-19011187 1.0000 120 chr2L:20911552-20911672 1.0000 120 chr2L:18822954-18823074 1.0000 120 chrX:19107037-19107157 1.0000 120 chr3R:24544611-24544731 1.0000 120 chr2L:8746380-8746500 1.0000 120 chr3R:23922342-23922462 1.0000 120 chr2L:9570812-9570932 1.0000 120 chr3R:17231664-17231784 1.0000 120 chr3R:18438356-18438476 1.0000 120 chr2R:19146066-19146186 1.0000 120 chr3L:21476836-21476956 1.0000 120 chr2L:974217-974337 1.0000 120 chr3L:1139520-1139640 1.0000 120 chr3R:26130707-26130827 1.0000 120 chr3R:27138106-27138226 1.0000 120 chr3L:3305610-3305730 1.0000 120 chrX:2166305-2166425 1.0000 120 chrX:1349370-1349490 1.0000 120 chr2L:3058789-3058909 1.0000 120 chr3R:21408516-21408636 1.0000 120 chr3R:10203722-10203842 1.0000 120 chr2L:8462002-8462122 1.0000 120 chr3R:10140353-10140473 1.0000 120 chrX:11451198-11451318 1.0000 120 chr2L:2864802-2864922 1.0000 120 chrX:17582804-17582924 1.0000 120 chr3R:23803834-23803954 1.0000 120 chr2R:18774904-18775024 1.0000 120 chr2L:13838756-13838876 1.0000 120 chrX:17176684-17176804 1.0000 120 chr3R:26121925-26122045 1.0000 120 chr3R:25004909-25005029 1.0000 120 chr3R:31309446-31309566 1.0000 120 chr3L:8419086-8419206 1.0000 120 chrX:16105818-16105938 1.0000 120 chr2R:21663202-21663322 1.0000 120 chr2R:21049421-21049541 1.0000 120 chr3L:1647183-1647303 1.0000 120 chr2L:10967409-10967529 1.0000 120 chrX:16103749-16103869 1.0000 120 chr3L:16147881-16148001 1.0000 120 chr3L:20731048-20731168 1.0000 120 chrX:12221682-12221802 1.0000 120 chr2L:21218860-21218980 1.0000 120 chr2L:3882337-3882457 1.0000 120 chr2R:23726018-23726138 1.0000 120 chr3R:21187137-21187257 1.0000 120 chr3R:9055230-9055350 1.0000 120 chr2L:488563-488683 1.0000 120 chr3R:13999702-13999822 1.0000 120 chr3R:31395344-31395464 1.0000 120 chrX:9120914-9121034 1.0000 120 chr3L:13411190-13411310 1.0000 120 chr3R:10350803-10350923 1.0000 120 chr3L:14543968-14544088 1.0000 120 chrX:20507853-20507973 1.0000 120 chr2R:11178641-11178761 1.0000 120 chr3L:12350434-12350554 1.0000 120 chr2R:15240285-15240405 1.0000 120 chr3L:14195883-14196003 1.0000 120 chr2L:8229777-8229897 1.0000 120 chr2L:15254326-15254446 1.0000 120 chrX:7333313-7333433 1.0000 120 chr2L:1123579-1123699 1.0000 120 chrX:20631301-20631421 1.0000 120 chr3L:9762239-9762359 1.0000 120 chr2L:10516868-10516988 1.0000 120 chr2L:19155098-19155218 1.0000 120 chr2L:12463108-12463228 1.0000 120 chr2L:5196817-5196937 1.0000 120 chrX:16782222-16782342 1.0000 120 chr3L:11303938-11304058 1.0000 120 chr2R:7490408-7490528 1.0000 120 chr3L:6264586-6264706 1.0000 120 chr2L:18666029-18666149 1.0000 120 chr3L:18782194-18782314 1.0000 120 chr2R:22657071-22657191 1.0000 120 chr2L:16816124-16816244 1.0000 120 chr2R:14913270-14913390 1.0000 120 chr2L:3444883-3445003 1.0000 120 chr3L:15715909-15716029 1.0000 120 chr2R:9006901-9007021 1.0000 120 chr3R:15089667-15089787 1.0000 120 chr3R:11372750-11372870 1.0000 120 chr2R:24142354-24142474 1.0000 120 chr3R:30413987-30414107 1.0000 120 chrX:17473425-17473545 1.0000 120 chr3R:8308800-8308920 1.0000 120 chrX:4530006-4530126 1.0000 120 chr3L:10845231-10845351 1.0000 120 chr3L:6982028-6982148 1.0000 120 chrX:11660603-11660723 1.0000 120 chr3R:31169097-31169217 1.0000 120 chr2R:8900149-8900269 1.0000 120 chr3L:765849-765969 1.0000 120 chr2L:12974395-12974515 1.0000 120 chrX:5286023-5286143 1.0000 120 chr3L:1216616-1216736 1.0000 120 chr3R:27988920-27989040 1.0000 120 chrX:8141543-8141663 1.0000 120 chr3R:23942887-23943007 1.0000 120 chr3R:18215512-18215632 1.0000 120 chrX:10775814-10775934 1.0000 120 chrX:3068451-3068571 1.0000 120 chr2R:13055050-13055170 1.0000 120 chr2R:24159300-24159420 1.0000 120 chr3L:2489550-2489670 1.0000 120 chr2R:16095043-16095163 1.0000 120 chr3R:25885263-25885383 1.0000 120 chrX:11548827-11548947 1.0000 120 chr3R:30058034-30058154 1.0000 120 chr2R:11809529-11809649 1.0000 120 chr3L:5152604-5152724 1.0000 120 chr2L:6461605-6461725 1.0000 120 chr3L:19166624-19166744 1.0000 120 chr2R:14906348-14906468 1.0000 120 chrX:21242003-21242123 1.0000 120 chr3R:21350140-21350260 1.0000 120 chr3R:14008977-14009097 1.0000 120 chr3R:11661813-11661933 1.0000 120 chr3L:6606093-6606213 1.0000 120 chr3L:14708148-14708268 1.0000 120 chr3R:26172205-26172325 1.0000 120 chr2L:18899951-18900071 1.0000 120 chr3L:5974685-5974805 1.0000 120 chr3L:5988789-5988909 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Esplm7-HLH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm7-HLH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.203 G 0.205 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.203 G 0.205 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RYAAACAR MEME-1 width = 8 sites = 49 llr = 406 E-value = 1.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5:aaa:a5 pos.-specific C :5:::a:2 probability G 5::::::3 matrix T :5:::::: bits 2.3 * 2.1 * 1.8 * *** 1.6 ***** Relative 1.4 ***** Entropy 1.2 * ***** (12.0 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus AT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25885263-25885383 61 1.73e-05 GATAAGGTCG GCAAACAA AATACTTATC chr2L:12463108-12463228 24 1.73e-05 GACTGTGTAT GCAAACAA AATTCATTAA chr2R:21076861-21076981 83 1.73e-05 AGTGATAAAT GCAAACAA CGCATATTGA chr3L:16429649-16429769 18 1.73e-05 ATGGTAAATA GCAAACAA CAAATAGTAA chrX:17473425-17473545 63 2.96e-05 tttaCACACA GCAAACAG CAACGACACA chr3R:23445394-23445514 32 2.96e-05 aagacaaacg gcaaacag cgaacaacaa chr2L:5303751-5303871 35 2.96e-05 GCACACCACA GCAAACAG AGTGGAGTGT chr2L:21218860-21218980 67 5.54e-05 CGCGTTGTTA GTAAACAA ACGCAGTGTT chr3R:26130707-26130827 29 5.54e-05 CGACCATAAA GTAAACAA GTCATGGCTG chr2L:9570812-9570932 39 5.54e-05 AATATGAAAA GTAAACAA AGTTGCTGGC chr2L:18822954-18823074 74 5.54e-05 ACGATGAATT GTAAACAA GCGGAGCCTT chr2L:20911552-20911672 37 5.54e-05 GTTTGCCTTT GTAAACAA TGGGAGGCTT chr2L:7149033-7149153 30 5.54e-05 CCATCACGGG GTAAACAA ATAAAAAGAT chr2R:8150710-8150830 17 5.54e-05 TGGATAAGAC GTAAACAA ATTCGCTTCC chr3R:23181092-23181212 65 5.54e-05 GTATTTGTGT GTAAACAA GACTATAGAT chr3R:26539327-26539447 12 5.54e-05 AAATAAACAA GTAAACAA GCCAGCAGCA chr2R:10304310-10304430 59 5.54e-05 TGTTTGTAGG GTAAACAA CGCGTACACT chr2R:6464951-6465071 70 5.54e-05 cagcataaaa gtaaacaa cagcataaca chr3L:20731048-20731168 42 7.99e-05 ATATGGCTAT ACAAACAA ACACCGACAC chr3R:23922342-23922462 15 7.99e-05 CAGCGACAAC ACAAACAA CACGAGAGCA chr3L:15532680-15532800 99 7.99e-05 TTTAAAGTGC ACAAACAA AAATCATATT chr3R:20560960-20561080 98 7.99e-05 CTTTGCGCAC ACAaacaa caacggcagc chr3L:19013910-19014030 81 7.99e-05 ACAGCTTTGC ACAAACAA TTTACAAAAA chr2L:9775336-9775456 19 7.99e-05 aaaaaaaaaa acaaacaa TTATCCACAT chr2R:10303690-10303810 7 9.81e-05 CTTGGC GTAAACAG CACGTACAAA chr3R:12222259-12222379 6 9.81e-05 GTTAA GTAAACAG AACTGAGCAC chr2R:14073624-14073744 55 9.81e-05 GCAGGTAAGC GTAAACAG TGCCAGCAAA chr2R:11178641-11178761 10 1.28e-04 TGAATTCCA ACAAACAG GCTTAATTAT chr2L:13838756-13838876 64 1.28e-04 CGGTGTTTAT GCAAACAC AAAGGCGTGT chr2L:974217-974337 18 1.28e-04 ACAAAAAGAG ACAAACAG TGATTCCCAT chr3R:18438356-18438476 48 1.28e-04 TGCTATGAAT GCAAACAC AAAGTTGTTG chr2L:5799615-5799735 14 1.28e-04 ACACTGGCCA ACAAACAG TGTGAGAAGG chrX:10044024-10044144 105 1.28e-04 GTGGTAACAC ACAAACAG CAAACGCG chrX:12889101-12889221 57 1.28e-04 TTGCCAGCGG ACAAACAG CGCTAACATT chr2L:2494679-2494799 36 1.28e-04 GCGCCCTTGT GCAAACAC ACGGAAAACC chrX:362243-362363 99 1.28e-04 CTGTCGAAAA ACAAACAG AGGAACAAAG chr3R:29757393-29757513 60 1.28e-04 AGCCTCCAAG GCAAACAC AAAGAGCGAT chr3R:11661813-11661933 111 1.64e-04 CAGATATGAT ATAAACAA TC chr3R:21350140-21350260 45 1.64e-04 CTCGATTTGT ATAAACAA GACCCACAAA chr2L:1123579-1123699 68 1.64e-04 CCTATTTCCT ATAAACAA ACTTAAAAAT chrX:11451198-11451318 14 1.64e-04 AATTATTACA ATAAACAA TATTTCTGGT chrX:15591824-15591944 47 2.08e-04 CACATTGGAA ATAAACAG GAGGCACTGC chr3L:11355619-11355739 70 2.08e-04 TGACTGACAA ATAAACAG AATGAAAATG chr3R:16282164-16282284 61 2.25e-04 aacaaataca acaaacac aacaacGAAG chr2R:9006901-9007021 67 2.51e-04 GCCCAACAAG ATAAACAC AGATTCCAAA chr2R:21663202-21663322 33 2.51e-04 CGCCAGCTGA ATAAACAC GCTAGCATCT chr3R:31309446-31309566 40 2.51e-04 AGCTGCACAA ATAAACAC GCAGAGCGGC chr2R:12475909-12476029 43 2.51e-04 TTGAGCAAAT ATAAACAC TTGTAATATT chr3L:8347513-8347633 50 2.63e-04 CGCCAGCTGT GCACACAA CGTCGCGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25885263-25885383 1.7e-05 60_[+1]_52 chr2L:12463108-12463228 1.7e-05 23_[+1]_89 chr2R:21076861-21076981 1.7e-05 82_[+1]_30 chr3L:16429649-16429769 1.7e-05 17_[+1]_95 chrX:17473425-17473545 3e-05 62_[+1]_50 chr3R:23445394-23445514 3e-05 31_[+1]_81 chr2L:5303751-5303871 3e-05 34_[+1]_78 chr2L:21218860-21218980 5.5e-05 66_[+1]_46 chr3R:26130707-26130827 5.5e-05 28_[+1]_84 chr2L:9570812-9570932 5.5e-05 38_[+1]_74 chr2L:18822954-18823074 5.5e-05 73_[+1]_39 chr2L:20911552-20911672 5.5e-05 36_[+1]_76 chr2L:7149033-7149153 5.5e-05 29_[+1]_83 chr2R:8150710-8150830 5.5e-05 16_[+1]_96 chr3R:23181092-23181212 5.5e-05 64_[+1]_48 chr3R:26539327-26539447 5.5e-05 11_[+1]_101 chr2R:10304310-10304430 5.5e-05 58_[+1]_54 chr2R:6464951-6465071 5.5e-05 69_[+1]_43 chr3L:20731048-20731168 8e-05 41_[+1]_71 chr3R:23922342-23922462 8e-05 14_[+1]_98 chr3L:15532680-15532800 8e-05 98_[+1]_14 chr3R:20560960-20561080 8e-05 97_[+1]_15 chr3L:19013910-19014030 8e-05 80_[+1]_32 chr2L:9775336-9775456 8e-05 18_[+1]_94 chr2R:10303690-10303810 9.8e-05 6_[+1]_106 chr3R:12222259-12222379 9.8e-05 5_[+1]_107 chr2R:14073624-14073744 9.8e-05 54_[+1]_58 chr2R:11178641-11178761 0.00013 9_[+1]_103 chr2L:13838756-13838876 0.00013 63_[+1]_49 chr2L:974217-974337 0.00013 17_[+1]_95 chr3R:18438356-18438476 0.00013 47_[+1]_65 chr2L:5799615-5799735 0.00013 13_[+1]_99 chrX:10044024-10044144 0.00013 104_[+1]_8 chrX:12889101-12889221 0.00013 56_[+1]_56 chr2L:2494679-2494799 0.00013 35_[+1]_77 chrX:362243-362363 0.00013 98_[+1]_14 chr3R:29757393-29757513 0.00013 59_[+1]_53 chr3R:11661813-11661933 0.00016 110_[+1]_2 chr3R:21350140-21350260 0.00016 44_[+1]_68 chr2L:1123579-1123699 0.00016 67_[+1]_45 chrX:11451198-11451318 0.00016 13_[+1]_99 chrX:15591824-15591944 0.00021 46_[+1]_66 chr3L:11355619-11355739 0.00021 69_[+1]_43 chr3R:16282164-16282284 0.00022 60_[+1]_52 chr2R:9006901-9007021 0.00025 66_[+1]_46 chr2R:21663202-21663322 0.00025 32_[+1]_80 chr3R:31309446-31309566 0.00025 39_[+1]_73 chr2R:12475909-12476029 0.00025 42_[+1]_70 chr3L:8347513-8347633 0.00026 49_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RYAAACAR width=8 seqs=49 chr3R:25885263-25885383 ( 61) GCAAACAA 1 chr2L:12463108-12463228 ( 24) GCAAACAA 1 chr2R:21076861-21076981 ( 83) GCAAACAA 1 chr3L:16429649-16429769 ( 18) GCAAACAA 1 chrX:17473425-17473545 ( 63) GCAAACAG 1 chr3R:23445394-23445514 ( 32) GCAAACAG 1 chr2L:5303751-5303871 ( 35) GCAAACAG 1 chr2L:21218860-21218980 ( 67) GTAAACAA 1 chr3R:26130707-26130827 ( 29) GTAAACAA 1 chr2L:9570812-9570932 ( 39) GTAAACAA 1 chr2L:18822954-18823074 ( 74) GTAAACAA 1 chr2L:20911552-20911672 ( 37) GTAAACAA 1 chr2L:7149033-7149153 ( 30) GTAAACAA 1 chr2R:8150710-8150830 ( 17) GTAAACAA 1 chr3R:23181092-23181212 ( 65) GTAAACAA 1 chr3R:26539327-26539447 ( 12) GTAAACAA 1 chr2R:10304310-10304430 ( 59) GTAAACAA 1 chr2R:6464951-6465071 ( 70) GTAAACAA 1 chr3L:20731048-20731168 ( 42) ACAAACAA 1 chr3R:23922342-23922462 ( 15) ACAAACAA 1 chr3L:15532680-15532800 ( 99) ACAAACAA 1 chr3R:20560960-20561080 ( 98) ACAAACAA 1 chr3L:19013910-19014030 ( 81) ACAAACAA 1 chr2L:9775336-9775456 ( 19) ACAAACAA 1 chr2R:10303690-10303810 ( 7) GTAAACAG 1 chr3R:12222259-12222379 ( 6) GTAAACAG 1 chr2R:14073624-14073744 ( 55) GTAAACAG 1 chr2R:11178641-11178761 ( 10) ACAAACAG 1 chr2L:13838756-13838876 ( 64) GCAAACAC 1 chr2L:974217-974337 ( 18) ACAAACAG 1 chr3R:18438356-18438476 ( 48) GCAAACAC 1 chr2L:5799615-5799735 ( 14) ACAAACAG 1 chrX:10044024-10044144 ( 105) ACAAACAG 1 chrX:12889101-12889221 ( 57) ACAAACAG 1 chr2L:2494679-2494799 ( 36) GCAAACAC 1 chrX:362243-362363 ( 99) ACAAACAG 1 chr3R:29757393-29757513 ( 60) GCAAACAC 1 chr3R:11661813-11661933 ( 111) ATAAACAA 1 chr3R:21350140-21350260 ( 45) ATAAACAA 1 chr2L:1123579-1123699 ( 68) ATAAACAA 1 chrX:11451198-11451318 ( 14) ATAAACAA 1 chrX:15591824-15591944 ( 47) ATAAACAG 1 chr3L:11355619-11355739 ( 70) ATAAACAG 1 chr3R:16282164-16282284 ( 61) ACAAACAC 1 chr2R:9006901-9007021 ( 67) ATAAACAC 1 chr2R:21663202-21663322 ( 33) ATAAACAC 1 chr3R:31309446-31309566 ( 40) ATAAACAC 1 chr2R:12475909-12476029 ( 43) ATAAACAC 1 chr3L:8347513-8347633 ( 50) GCACACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 1.5e-005 70 -1226 137 -1226 -1226 133 -1226 70 179 -1226 -1226 -1226 176 -331 -1226 -1226 179 -1226 -1226 -1226 -1226 230 -1226 -1226 179 -1226 -1226 -1226 87 -14 48 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.5e-005 0.469388 0.000000 0.530612 0.000000 0.000000 0.510204 0.000000 0.489796 1.000000 0.000000 0.000000 0.000000 0.979592 0.020408 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.530612 0.183673 0.285714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-1 regular expression -------------------------------------------------------------------------------- [GA][CT]AAACA[AG] -------------------------------------------------------------------------------- Time 8.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTTTGY MEME-2 width = 8 sites = 75 llr = 553 E-value = 5.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::::1: pos.-specific C :::::::6 probability G 2:8:1:7: matrix T 7a2a9a14 bits 2.3 2.1 1.8 1.6 *** * Relative 1.4 *** * Entropy 1.2 ******* (10.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5974685-5974805 86 2.14e-05 CATATGCGCC TTGTTTGC ATATAGAAAT chrX:11660603-11660723 25 2.14e-05 cagcttgtgt ttgtttgc ttcgctcgca chr3R:8308800-8308920 15 2.14e-05 AATTACGCTA TTGTTTGC GCTGCAAACA chr3L:15715909-15716029 23 2.14e-05 CGTGCTCGCC TTGTTTGC CCTACGTTAA chr2L:20911552-20911672 25 2.14e-05 CTTGGCTTTG TTGTTTGC CTTTGTAAAC chr3L:15626197-15626317 49 2.14e-05 CTTTGTTGAT TTGTTTGC GCAGCTCTCA chr3L:11107581-11107701 33 2.14e-05 GTTATTCATT TTGTTTGC TTGTCAGTCA chr3L:16429649-16429769 89 2.14e-05 TATGCGTGAT TTGTTTGC TGATGAATGC chr2L:9775336-9775456 107 2.14e-05 GAATAGGAAA TTGTTTGC GGCAAA chrX:21242003-21242123 96 5.33e-05 gtctccatgt ttgtttgt ctcgggcgta chr2L:13838756-13838876 94 5.33e-05 TCTGTTTGGT TTGTTTGT AAATAGCCAA chr2R:18774904-18775024 69 5.33e-05 CACAAAACAG TTGTTTGT TTTGCTCGGT chr3R:19011067-19011187 5 5.33e-05 CTAA TTGTTTGT ATTCATGTTG chr3L:12090314-12090434 56 5.33e-05 gcagatgagg ttgtttgt tgttgctgtt chr3L:8925791-8925911 86 5.33e-05 CGTTATTATG TTGTTTGT TCGTTGTTTA chr2R:9309687-9309807 7 5.33e-05 TTTGGT TTGTTTGT GGCTCTATTT chr2R:10304310-10304430 48 5.33e-05 GAAGAGATTG TTGTTTGT AGGGTAAACA chr3R:19467566-19467686 98 5.33e-05 CATACCCACA TTGTTTGT CTACAGCGAC chrX:3188547-3188667 9 6.79e-05 TATGAAGT GTGTTTGC TTGAGTGATT chr3L:2572180-2572300 95 6.79e-05 TGGTCTGCCA GTGTTTGC AGCTGGGTCA chr2L:19998302-19998422 4 6.79e-05 TGT GTGTTTGC TCAGTCGCCA chrX:22837507-22837627 39 6.79e-05 AAAAAAACCC GTGTTTGC AATACAATTA chr3R:21350140-21350260 92 8.24e-05 AGGCCCGTCA TTGTGTGC GGTATCAATT chr2R:13055050-13055170 98 8.24e-05 ACCGCTCCTG TTGTGTGC GAACGTGCCC chrX:2294638-2294758 19 8.24e-05 ATACATATGT TTGTGTGC GAGCACAAAG chr2R:9006901-9007021 31 1.03e-04 TTTCTGGCTA ATGTTTGC TGCCTCTGTT chr3R:10203722-10203842 19 1.03e-04 ACAAATATTT ATGTTTGC TTACAGTGCA chr3L:22163913-22164033 58 1.03e-04 CCATGGCGCT ATGTTTGC TTTCGGTTGT chrX:20506063-20506183 39 1.03e-04 CGATTTCAAT ATGTTTGC ACTTCCCATT chr2R:21909938-21910058 18 1.03e-04 CTGCGTCAAA ATGTTTGC TACTCCAGCT chr3L:1880876-1880996 113 1.03e-04 GGTTCAGCAG ATGTTTGC chr2L:18899951-18900071 13 1.87e-04 CCATTATTCG GTGTTTGT TTTTGTAGGA chr3L:14708148-14708268 47 1.87e-04 AAGTTTTAGC TTGTTTAC ACAAGAGTGT chrX:5286023-5286143 66 1.87e-04 tttttttttt ttttttGC TATTCAAAGT chr2R:24142354-24142474 45 1.87e-04 GTGTTTCTCA GTGTTTGT TCGGCTCGGC chrX:16782222-16782342 24 1.87e-04 TTTGGCTTTT GTGTTTGT GTTTTTTTGT chr2L:5196817-5196937 32 1.87e-04 TGGCCGGGCT GTGTTTGT GTCATAAATT chrX:7333313-7333433 55 1.87e-04 ATCAATAGCC TTGTTTAC CCGCCAAATT chrX:12221682-12221802 106 1.87e-04 TACCTAACAT TTTTTTGC CAGTGTA chrX:6179537-6179657 105 1.87e-04 TCAATGTTTT TTTTTTGC TGCCAACT chr2R:8150710-8150830 76 1.87e-04 TGCCCGCAGC TTGTTTAC TCGGCTGCCA chrX:11653176-11653296 94 1.87e-04 AATTCGTTTT TTTTTTGC AGTGCATCCT chr3L:8584224-8584344 60 1.87e-04 ACACACGTGG TTGTTTAC AGAAACAACT chr2R:9546537-9546657 91 1.87e-04 ATGCTTCGCT TTGTTTAC ATATGGTACA chr2L:2494679-2494799 16 1.87e-04 CGGCTATTCT TTGTTTAC ATGCGCCCTT chr3L:16544409-16544529 10 1.87e-04 TAATTAATA TTGTTTAC CAAGGATTTC chr3R:10350803-10350923 112 2.08e-04 CGTTTAACgt ttgtgtgt g chr2L:7149033-7149153 60 2.08e-04 ACGGGCTGTG TTGTGTGT TTTTAGTTGT chrX:3068451-3068571 108 2.40e-04 GAACCACCAA TTGTTTTC TGCCA chr2L:21218860-21218980 50 2.40e-04 TCAGTTGTTT TTGTTTTC GCGTTGTTAG chr2R:14073624-14073744 2 2.40e-04 a ttgttTTC TTGTTGATTG chr3R:23803834-23803954 76 2.50e-04 GTGAGCGAGT GTGTGTGC CTAGCATGGC chr2L:2864802-2864922 85 2.80e-04 ATGCTGTTAG ATGTTTGT TGCTTATCTA chr3R:23181092-23181212 86 2.80e-04 TATAGATATT ATGTTTGT TATTGGTCAT chr2R:14906348-14906468 58 3.87e-04 ATAAGCAAGG TTGTTGGC GTACTTTACT chr3R:15089667-15089787 102 3.87e-04 TTGCCCTTCC TTGTTTAT TTGTTGTTCA chr2L:8229777-8229897 102 3.87e-04 GATTACTCCG TTTTTTGT CTCCGTGCAC chr3L:14195883-14196003 38 3.87e-04 AGTGTGTCTG TTTTTTGT GGGCGTATTT chr3L:20731048-20731168 9 3.87e-04 CGGTAGCG TTGTTGGC CCATACAAAC chr3L:16147881-16148001 101 3.87e-04 CCCTAATCTT TTTTTTGT AATCTTTGTC chr2L:4838614-4838734 13 3.87e-04 TTAATCCCTT TTTTTTGT TGTTGATATA chr2R:21042815-21042935 77 3.87e-04 TTTGGATGGT TTTTTTGT GACGGCACGT chr2R:12729305-12729425 71 3.87e-04 CATTCGGCCC TTGTTTAT ATTTGCATAA chr3L:4101726-4101846 94 4.29e-04 AAATAATTTC GTTTTTGC TTTTGCTGCT chr3R:6182613-6182733 86 4.29e-04 ATGGGCTTTA GTGTTTAC CCGGTTCTTA chr3L:21476836-21476956 25 4.76e-04 TTCCAAGCCC TTGTTTTT GTTGTTTAAA chrX:6059273-6059393 85 4.76e-04 TCTATGTTAT TTGTTTTT CCAACTGGGG chr2R:18952261-18952381 102 4.76e-04 ATTTTTTGTT TTGTTTTT GAGGCCCCTC chr2R:21049421-21049541 53 5.46e-04 TAGCTAGCAC TTGTGTAC ATTTTCATTA chr2R:11792806-11792926 18 5.46e-04 CATGAAATAC TTTTGTGC TCTGTTTGCA chr3R:16558876-16558996 34 5.46e-04 AAGCCGATGA TTTTGTGC CCTATATTCA chr2R:20163776-20163896 53 5.46e-04 TGATGATAAA TTTTGTGC TTTCGTAGTA chr3L:13411190-13411310 67 5.68e-04 AGTTCTCTTG GTGTTTTC CGATTAGGTG chr3L:18398155-18398275 80 5.90e-04 GCCACTGCCA TTGTTGGT TTATCTTTCT chrX:16103749-16103869 88 6.70e-04 ATTTTGGATT TTGTGTTC CCAAAATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5974685-5974805 2.1e-05 85_[+2]_27 chrX:11660603-11660723 2.1e-05 24_[+2]_88 chr3R:8308800-8308920 2.1e-05 14_[+2]_98 chr3L:15715909-15716029 2.1e-05 22_[+2]_90 chr2L:20911552-20911672 2.1e-05 24_[+2]_88 chr3L:15626197-15626317 2.1e-05 48_[+2]_64 chr3L:11107581-11107701 2.1e-05 32_[+2]_80 chr3L:16429649-16429769 2.1e-05 88_[+2]_24 chr2L:9775336-9775456 2.1e-05 106_[+2]_6 chrX:21242003-21242123 5.3e-05 95_[+2]_17 chr2L:13838756-13838876 5.3e-05 93_[+2]_19 chr2R:18774904-18775024 5.3e-05 68_[+2]_44 chr3R:19011067-19011187 5.3e-05 4_[+2]_108 chr3L:12090314-12090434 5.3e-05 55_[+2]_57 chr3L:8925791-8925911 5.3e-05 85_[+2]_27 chr2R:9309687-9309807 5.3e-05 6_[+2]_106 chr2R:10304310-10304430 5.3e-05 47_[+2]_65 chr3R:19467566-19467686 5.3e-05 97_[+2]_15 chrX:3188547-3188667 6.8e-05 8_[+2]_104 chr3L:2572180-2572300 6.8e-05 94_[+2]_18 chr2L:19998302-19998422 6.8e-05 3_[+2]_109 chrX:22837507-22837627 6.8e-05 38_[+2]_74 chr3R:21350140-21350260 8.2e-05 91_[+2]_21 chr2R:13055050-13055170 8.2e-05 97_[+2]_15 chrX:2294638-2294758 8.2e-05 18_[+2]_94 chr2R:9006901-9007021 0.0001 30_[+2]_82 chr3R:10203722-10203842 0.0001 18_[+2]_94 chr3L:22163913-22164033 0.0001 57_[+2]_55 chrX:20506063-20506183 0.0001 38_[+2]_74 chr2R:21909938-21910058 0.0001 17_[+2]_95 chr3L:1880876-1880996 0.0001 112_[+2] chr2L:18899951-18900071 0.00019 12_[+2]_100 chr3L:14708148-14708268 0.00019 46_[+2]_66 chrX:5286023-5286143 0.00019 65_[+2]_47 chr2R:24142354-24142474 0.00019 44_[+2]_68 chrX:16782222-16782342 0.00019 23_[+2]_89 chr2L:5196817-5196937 0.00019 31_[+2]_81 chrX:7333313-7333433 0.00019 54_[+2]_58 chrX:12221682-12221802 0.00019 105_[+2]_7 chrX:6179537-6179657 0.00019 104_[+2]_8 chr2R:8150710-8150830 0.00019 75_[+2]_37 chrX:11653176-11653296 0.00019 93_[+2]_19 chr3L:8584224-8584344 0.00019 59_[+2]_53 chr2R:9546537-9546657 0.00019 90_[+2]_22 chr2L:2494679-2494799 0.00019 15_[+2]_97 chr3L:16544409-16544529 0.00019 9_[+2]_103 chr3R:10350803-10350923 0.00021 111_[+2]_1 chr2L:7149033-7149153 0.00021 59_[+2]_53 chrX:3068451-3068571 0.00024 107_[+2]_5 chr2L:21218860-21218980 0.00024 49_[+2]_63 chr2R:14073624-14073744 0.00024 1_[+2]_111 chr3R:23803834-23803954 0.00025 75_[+2]_37 chr2L:2864802-2864922 0.00028 84_[+2]_28 chr3R:23181092-23181212 0.00028 85_[+2]_27 chr2R:14906348-14906468 0.00039 57_[+2]_55 chr3R:15089667-15089787 0.00039 101_[+2]_11 chr2L:8229777-8229897 0.00039 101_[+2]_11 chr3L:14195883-14196003 0.00039 37_[+2]_75 chr3L:20731048-20731168 0.00039 8_[+2]_104 chr3L:16147881-16148001 0.00039 100_[+2]_12 chr2L:4838614-4838734 0.00039 12_[+2]_100 chr2R:21042815-21042935 0.00039 76_[+2]_36 chr2R:12729305-12729425 0.00039 70_[+2]_42 chr3L:4101726-4101846 0.00043 93_[+2]_19 chr3R:6182613-6182733 0.00043 85_[+2]_27 chr3L:21476836-21476956 0.00048 24_[+2]_88 chrX:6059273-6059393 0.00048 84_[+2]_28 chr2R:18952261-18952381 0.00048 101_[+2]_11 chr2R:21049421-21049541 0.00055 52_[+2]_60 chr2R:11792806-11792926 0.00055 17_[+2]_95 chr3R:16558876-16558996 0.00055 33_[+2]_79 chr2R:20163776-20163896 0.00055 52_[+2]_60 chr3L:13411190-13411310 0.00057 66_[+2]_46 chr3L:18398155-18398275 0.00059 79_[+2]_33 chrX:16103749-16103869 0.00067 87_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTTGY width=8 seqs=75 chr3L:5974685-5974805 ( 86) TTGTTTGC 1 chrX:11660603-11660723 ( 25) TTGTTTGC 1 chr3R:8308800-8308920 ( 15) TTGTTTGC 1 chr3L:15715909-15716029 ( 23) TTGTTTGC 1 chr2L:20911552-20911672 ( 25) TTGTTTGC 1 chr3L:15626197-15626317 ( 49) TTGTTTGC 1 chr3L:11107581-11107701 ( 33) TTGTTTGC 1 chr3L:16429649-16429769 ( 89) TTGTTTGC 1 chr2L:9775336-9775456 ( 107) TTGTTTGC 1 chrX:21242003-21242123 ( 96) TTGTTTGT 1 chr2L:13838756-13838876 ( 94) TTGTTTGT 1 chr2R:18774904-18775024 ( 69) TTGTTTGT 1 chr3R:19011067-19011187 ( 5) TTGTTTGT 1 chr3L:12090314-12090434 ( 56) TTGTTTGT 1 chr3L:8925791-8925911 ( 86) TTGTTTGT 1 chr2R:9309687-9309807 ( 7) TTGTTTGT 1 chr2R:10304310-10304430 ( 48) TTGTTTGT 1 chr3R:19467566-19467686 ( 98) TTGTTTGT 1 chrX:3188547-3188667 ( 9) GTGTTTGC 1 chr3L:2572180-2572300 ( 95) GTGTTTGC 1 chr2L:19998302-19998422 ( 4) GTGTTTGC 1 chrX:22837507-22837627 ( 39) GTGTTTGC 1 chr3R:21350140-21350260 ( 92) TTGTGTGC 1 chr2R:13055050-13055170 ( 98) TTGTGTGC 1 chrX:2294638-2294758 ( 19) TTGTGTGC 1 chr2R:9006901-9007021 ( 31) ATGTTTGC 1 chr3R:10203722-10203842 ( 19) ATGTTTGC 1 chr3L:22163913-22164033 ( 58) ATGTTTGC 1 chrX:20506063-20506183 ( 39) ATGTTTGC 1 chr2R:21909938-21910058 ( 18) ATGTTTGC 1 chr3L:1880876-1880996 ( 113) ATGTTTGC 1 chr2L:18899951-18900071 ( 13) GTGTTTGT 1 chr3L:14708148-14708268 ( 47) TTGTTTAC 1 chrX:5286023-5286143 ( 66) TTTTTTGC 1 chr2R:24142354-24142474 ( 45) GTGTTTGT 1 chrX:16782222-16782342 ( 24) GTGTTTGT 1 chr2L:5196817-5196937 ( 32) GTGTTTGT 1 chrX:7333313-7333433 ( 55) TTGTTTAC 1 chrX:12221682-12221802 ( 106) TTTTTTGC 1 chrX:6179537-6179657 ( 105) TTTTTTGC 1 chr2R:8150710-8150830 ( 76) TTGTTTAC 1 chrX:11653176-11653296 ( 94) TTTTTTGC 1 chr3L:8584224-8584344 ( 60) TTGTTTAC 1 chr2R:9546537-9546657 ( 91) TTGTTTAC 1 chr2L:2494679-2494799 ( 16) TTGTTTAC 1 chr3L:16544409-16544529 ( 10) TTGTTTAC 1 chr3R:10350803-10350923 ( 112) TTGTGTGT 1 chr2L:7149033-7149153 ( 60) TTGTGTGT 1 chrX:3068451-3068571 ( 108) TTGTTTTC 1 chr2L:21218860-21218980 ( 50) TTGTTTTC 1 chr2R:14073624-14073744 ( 2) TTGTTTTC 1 chr3R:23803834-23803954 ( 76) GTGTGTGC 1 chr2L:2864802-2864922 ( 85) ATGTTTGT 1 chr3R:23181092-23181212 ( 86) ATGTTTGT 1 chr2R:14906348-14906468 ( 58) TTGTTGGC 1 chr3R:15089667-15089787 ( 102) TTGTTTAT 1 chr2L:8229777-8229897 ( 102) TTTTTTGT 1 chr3L:14195883-14196003 ( 38) TTTTTTGT 1 chr3L:20731048-20731168 ( 9) TTGTTGGC 1 chr3L:16147881-16148001 ( 101) TTTTTTGT 1 chr2L:4838614-4838734 ( 13) TTTTTTGT 1 chr2R:21042815-21042935 ( 77) TTTTTTGT 1 chr2R:12729305-12729425 ( 71) TTGTTTAT 1 chr3L:4101726-4101846 ( 94) GTTTTTGC 1 chr3R:6182613-6182733 ( 86) GTGTTTAC 1 chr3L:21476836-21476956 ( 25) TTGTTTTT 1 chrX:6059273-6059393 ( 85) TTGTTTTT 1 chr2R:18952261-18952381 ( 102) TTGTTTTT 1 chr2R:21049421-21049541 ( 53) TTGTGTAC 1 chr2R:11792806-11792926 ( 18) TTTTGTGC 1 chr3R:16558876-16558996 ( 34) TTTTGTGC 1 chr2R:20163776-20163896 ( 53) TTTTGTGC 1 chr3L:13411190-13411310 ( 67) GTGTTTTC 1 chr3L:18398155-18398275 ( 80) TTGTTGGT 1 chrX:16103749-16103869 ( 88) TTGTGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.98753 E= 5.2e-001 -144 -1287 -36 128 -1287 -1287 -1287 173 -1287 -1287 201 -80 -1287 -1287 -1287 173 -1287 -1287 -48 150 -1287 -1287 -236 167 -98 -1287 186 -150 -1287 163 -1287 30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 5.2e-001 0.106667 0.000000 0.160000 0.733333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.826667 0.173333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.146667 0.853333 0.000000 0.000000 0.040000 0.960000 0.146667 0.000000 0.746667 0.106667 0.000000 0.626667 0.000000 0.373333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-2 regular expression -------------------------------------------------------------------------------- TTGTTTG[CT] -------------------------------------------------------------------------------- Time 14.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCWCC MEME-3 width = 8 sites = 11 llr = 115 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C 7a2aa1aa probability G 3:8::::: matrix T :::::4:: bits 2.3 * ** ** 2.1 * ** ** 1.8 * ** ** 1.6 **** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (15.1 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCACC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4530006-4530126 108 4.16e-06 TAGATGTAGA CCGCCACC CAGGG chr3R:14012960-14013080 67 4.16e-06 TACTTAAACC CCGCCACC CTCCGCCACG chr3L:18398155-18398275 29 8.49e-06 TCCTTCTGCT CCGCCTCC CGCAACAGAG chr3R:24348216-24348336 104 8.49e-06 TCCGCTGCCG CCGCCTCC GCGCATGCC chr3L:21496604-21496724 71 8.49e-06 CATTCCCACG CCGCCTCC TGGCAGAGGA chr2L:16816124-16816244 12 1.27e-05 TCAGTCGATT GCGCCACC TTGTGCGCGA chr2R:16551952-16552072 53 1.27e-05 ATACAAAAGA GCGCCACC TAGAAAATAT chr2L:21308515-21308635 14 1.71e-05 AGGTCGTCCT GCGCCTCC TCTGCCTCGA chr3L:772361-772481 111 2.00e-05 GTATTTTATC CCGCCCCC TT chrX:8141543-8141663 38 2.41e-05 GTATCTTCAA CCCCCACC TAACACACAC chr2L:12974395-12974515 61 2.41e-05 AAGCCCTTCC CCCCCACC AACACACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4530006-4530126 4.2e-06 107_[+3]_5 chr3R:14012960-14013080 4.2e-06 66_[+3]_46 chr3L:18398155-18398275 8.5e-06 28_[+3]_84 chr3R:24348216-24348336 8.5e-06 103_[+3]_9 chr3L:21496604-21496724 8.5e-06 70_[+3]_42 chr2L:16816124-16816244 1.3e-05 11_[+3]_101 chr2R:16551952-16552072 1.3e-05 52_[+3]_60 chr2L:21308515-21308635 1.7e-05 13_[+3]_99 chr3L:772361-772481 2e-05 110_[+3]_2 chrX:8141543-8141663 2.4e-05 37_[+3]_75 chr2L:12974395-12974515 2.4e-05 60_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCWCC width=8 seqs=11 chrX:4530006-4530126 ( 108) CCGCCACC 1 chr3R:14012960-14013080 ( 67) CCGCCACC 1 chr3L:18398155-18398275 ( 29) CCGCCTCC 1 chr3R:24348216-24348336 ( 104) CCGCCTCC 1 chr3L:21496604-21496724 ( 71) CCGCCTCC 1 chr2L:16816124-16816244 ( 12) GCGCCACC 1 chr2R:16551952-16552072 ( 53) GCGCCACC 1 chr2L:21308515-21308635 ( 14) GCGCCTCC 1 chr3L:772361-772481 ( 111) CCGCCCCC 1 chrX:8141543-8141663 ( 38) CCCCCACC 1 chr2L:12974395-12974515 ( 61) CCCCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 1.5e+003 -1010 184 41 -1010 -1010 230 -1010 -1010 -1010 -16 200 -1010 -1010 230 -1010 -1010 -1010 230 -1010 -1010 91 -116 -1010 27 -1010 230 -1010 -1010 -1010 230 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.5e+003 0.000000 0.727273 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.090909 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCWCC MEME-3 regular expression -------------------------------------------------------------------------------- [CG]CGCC[AT]CC -------------------------------------------------------------------------------- Time 21.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTCGAC MEME-4 width = 8 sites = 5 llr = 60 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C ::a:a::a probability G aa:::a:: matrix T :::a:::: bits 2.3 *** ** * 2.1 *** ** * 1.8 *** **** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCTCGAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23942887-23943007 25 6.31e-06 GCATAGCCGC GGCTCGAC TGCATCACAG chr2R:7490408-7490528 84 6.31e-06 AAGTTGCCTA GGCTCGAC CAAGTTTCGC chrX:17582804-17582924 106 6.31e-06 CTTCCTTATT GGCTCGAC TTTGAAC chr2R:8150710-8150830 110 6.31e-06 GCCGTCGGAG GGCTCGAC GCT chr2R:21648159-21648279 51 6.31e-06 TTTGAATTTT GGCTCGAC TCGCTAATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23942887-23943007 6.3e-06 24_[+4]_88 chr2R:7490408-7490528 6.3e-06 83_[+4]_29 chrX:17582804-17582924 6.3e-06 105_[+4]_7 chr2R:8150710-8150830 6.3e-06 109_[+4]_3 chr2R:21648159-21648279 6.3e-06 50_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTCGAC width=8 seqs=5 chr3R:23942887-23943007 ( 25) GGCTCGAC 1 chr2R:7490408-7490528 ( 84) GGCTCGAC 1 chrX:17582804-17582924 ( 106) GGCTCGAC 1 chr2R:8150710-8150830 ( 110) GGCTCGAC 1 chr2R:21648159-21648279 ( 51) GGCTCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.2e+004 -897 -897 228 -897 -897 -897 228 -897 -897 230 -897 -897 -897 -897 -897 172 -897 230 -897 -897 -897 -897 228 -897 179 -897 -897 -897 -897 230 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTCGAC MEME-4 regular expression -------------------------------------------------------------------------------- GGCTCGAC -------------------------------------------------------------------------------- Time 27.21 secs. ******************************************************************************** ******************************************************************************** MOTIF KCGCCAKC MEME-5 width = 8 sites = 9 llr = 95 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :a:aa::a probability G 6:a:::4: matrix T 4:::::6: bits 2.3 **** * 2.1 **** * 1.8 ***** * 1.6 ***** * Relative 1.4 ***** * Entropy 1.2 ****** * (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCATC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16147881-16148001 57 4.24e-06 ATAATGAACA GCGCCAGC ACGTAAAGCC chr2R:18952261-18952381 35 4.24e-06 CACCCTCCCC GCGCCAGC ACATATTGAC chrX:4530006-4530126 42 1.05e-05 CACGCTAGCA GCGCCATC TGACGGGGCA chr3L:6264586-6264706 19 1.05e-05 AGATTTACTG GCGCCATC TAGGGCCTTA chrX:16105818-16105938 46 1.05e-05 AATATGTGAA GCGCCATC CAGCGGATAG chr2R:21663202-21663322 22 1.67e-05 TGTATCTAGA TCGCCAGC TGAATAAACA chr2R:12475909-12476029 77 1.67e-05 TTATATTCAT TCGCCAGC TCCACTCGCA chr3R:10350803-10350923 14 2.60e-05 TTGGTTCCAC TCGCCATC TCGCTCGCCC chr3R:20273696-20273816 25 2.60e-05 CGTCGCGGTG TCGCCATC AGTCAAAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16147881-16148001 4.2e-06 56_[+5]_56 chr2R:18952261-18952381 4.2e-06 34_[+5]_78 chrX:4530006-4530126 1e-05 41_[+5]_71 chr3L:6264586-6264706 1e-05 18_[+5]_94 chrX:16105818-16105938 1e-05 45_[+5]_67 chr2R:21663202-21663322 1.7e-05 21_[+5]_91 chr2R:12475909-12476029 1.7e-05 76_[+5]_36 chr3R:10350803-10350923 2.6e-05 13_[+5]_99 chr3R:20273696-20273816 2.6e-05 24_[+5]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCGCCAKC width=8 seqs=9 chr3L:16147881-16148001 ( 57) GCGCCAGC 1 chr2R:18952261-18952381 ( 35) GCGCCAGC 1 chrX:4530006-4530126 ( 42) GCGCCATC 1 chr3L:6264586-6264706 ( 19) GCGCCATC 1 chrX:16105818-16105938 ( 46) GCGCCATC 1 chr2R:21663202-21663322 ( 22) TCGCCAGC 1 chr2R:12475909-12476029 ( 77) TCGCCAGC 1 chr3R:10350803-10350923 ( 14) TCGCCATC 1 chr3R:20273696-20273816 ( 25) TCGCCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 3.8e+004 -982 -982 144 55 -982 230 -982 -982 -982 -982 228 -982 -982 230 -982 -982 -982 230 -982 -982 179 -982 -982 -982 -982 -982 111 88 -982 230 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.8e+004 0.000000 0.000000 0.555556 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.444444 0.555556 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCAKC MEME-5 regular expression -------------------------------------------------------------------------------- [GT]CGCCA[TG]C -------------------------------------------------------------------------------- Time 33.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2393200-2393320 4.94e-01 120 chr2R:12729305-12729425 5.29e-01 120 chr3R:19467566-19467686 3.87e-02 97_[+2(5.33e-05)]_15 chr2R:6464951-6465071 2.10e-01 51_[+1(5.54e-05)]_10_[+1(5.54e-05)]_\ 43 chr3R:29757393-29757513 7.82e-02 120 chr2L:9775336-9775456 1.40e-03 18_[+1(7.99e-05)]_80_[+2(2.14e-05)]_\ 6 chr3L:16429649-16429769 3.05e-03 17_[+1(1.73e-05)]_63_[+2(2.14e-05)]_\ 24 chr2R:20163776-20163896 4.26e-01 120 chr2R:22200021-22200141 4.13e-01 120 chr3R:27421886-27422006 4.93e-01 120 chr3L:11107581-11107701 1.57e-01 32_[+2(2.14e-05)]_80 chr3L:10741309-10741429 2.36e-01 120 chr3R:16558876-16558996 1.79e-01 120 chr3R:29936391-29936511 9.08e-02 120 chr2R:10304310-10304430 1.91e-03 47_[+2(5.33e-05)]_3_[+1(5.54e-05)]_\ 54 chr3R:6182613-6182733 1.09e-01 120 chr2L:19200350-19200470 5.21e-01 120 chr3L:11297338-11297458 7.59e-01 120 chrX:362243-362363 9.34e-02 120 chr3L:16544409-16544529 2.34e-01 120 chr3R:14012960-14013080 1.26e-02 66_[+3(4.16e-06)]_46 chr3R:26539327-26539447 4.08e-03 11_[+1(5.54e-05)]_101 chr2R:14073624-14073744 1.89e-04 54_[+1(9.81e-05)]_58 chr2R:21042815-21042935 1.50e-02 120 chr3R:8784954-8785074 9.01e-01 120 chr2L:10061435-10061555 9.96e-01 120 chr2R:21648159-21648279 3.94e-02 50_[+4(6.31e-06)]_62 chr3L:19013910-19014030 3.70e-01 80_[+1(7.99e-05)]_32 chr3L:11355619-11355739 9.06e-02 120 chr2R:15530014-15530134 1.73e-01 120 chr3L:4233151-4233271 3.41e-01 120 chr2L:14587158-14587278 6.77e-02 19_[+3(7.27e-05)]_93 chr2R:9402784-9402904 6.61e-02 120 chr3L:21496604-21496724 8.16e-03 70_[+3(8.49e-06)]_42 chr3L:1880876-1880996 4.32e-01 120 chr2L:14395041-14395161 5.21e-02 120 chr3L:6861350-6861470 9.87e-01 120 chr3R:10150700-10150820 7.73e-02 120 chr2L:2494679-2494799 1.07e-02 120 chr3R:21855588-21855708 2.11e-01 120 chr2L:20390188-20390308 3.48e-01 33_[+1(7.99e-05)]_[+1(7.99e-05)]_71 chr3R:20273696-20273816 5.52e-03 24_[+5(2.60e-05)]_88 chr3R:26034896-26035016 3.81e-02 120 chrX:22837507-22837627 2.27e-01 38_[+2(6.79e-05)]_74 chr2L:117887-118007 5.12e-02 120 chr3R:20560960-20561080 6.63e-02 97_[+1(7.99e-05)]_15 chr3R:23181092-23181212 5.40e-02 64_[+1(5.54e-05)]_48 chr3L:8347513-8347633 6.88e-03 38_[+5(4.64e-05)]_74 chrX:12889101-12889221 9.69e-03 120 chr2L:1362384-1362504 5.12e-03 22_[+5(1.05e-05)]_17_[+5(1.05e-05)]_\ 65 chr2L:19998302-19998422 1.53e-01 3_[+2(6.79e-05)]_109 chr2R:9546537-9546657 1.73e-02 120 chrX:10044024-10044144 3.90e-01 120 chr2L:17388167-17388287 4.27e-01 120 chr2R:15754371-15754491 5.69e-01 120 chr3R:18804546-18804666 6.62e-01 120 chrX:11466950-11467070 6.48e-01 120 chr2L:4838614-4838734 4.39e-01 120 chr3R:16282164-16282284 1.52e-01 120 chr2R:19971453-19971573 9.28e-01 120 chr2L:21308515-21308635 6.17e-03 13_[+3(1.71e-05)]_99 chr2R:20063371-20063491 3.78e-01 120 chr3R:30802926-30803046 3.17e-01 120 chr2R:18952261-18952381 6.70e-04 34_[+5(4.24e-06)]_78 chr3L:8584224-8584344 5.66e-02 120 chrX:9251425-9251545 4.23e-01 120 chrX:10067653-10067773 9.90e-01 120 chr2R:19874699-19874819 3.98e-01 120 chr2R:9144157-9144277 6.48e-01 120 chr3R:24348216-24348336 1.38e-02 103_[+3(8.49e-06)]_9 chr3L:137001-137121 3.92e-01 120 chr3L:4521940-4522060 2.40e-02 120 chrX:11653176-11653296 1.20e-01 120 chr2R:11792806-11792926 1.68e-01 120 chr3L:4101726-4101846 4.52e-01 120 chr2R:21909938-21910058 1.06e-01 120 chr3L:2486579-2486699 3.77e-01 120 chr3R:9889088-9889208 9.87e-01 120 chr3R:12222259-12222379 2.83e-01 5_[+1(9.81e-05)]_107 chrX:2294638-2294758 6.33e-02 18_[+2(8.24e-05)]_94 chrX:772827-772947 9.31e-01 120 chrX:20506063-20506183 1.88e-01 120 chr3L:22163913-22164033 1.25e-01 120 chr3L:2572180-2572300 9.55e-02 94_[+2(6.79e-05)]_18 chr2R:21076861-21076981 8.91e-02 82_[+1(1.73e-05)]_30 chr2R:21851756-21851876 5.95e-01 120 chrX:12014812-12014932 2.00e-01 120 chrX:19697732-19697852 4.51e-02 120 chr3L:20539638-20539758 8.41e-01 120 chr2L:6283463-6283583 4.95e-02 120 chr2R:15354501-15354621 3.91e-01 120 chr2R:16551952-16552072 3.46e-03 52_[+3(1.27e-05)]_60 chr3L:15626197-15626317 1.55e-02 48_[+2(2.14e-05)]_50_[+2(8.24e-05)]_\ 6 chr3L:775103-775223 6.07e-01 120 chr2R:9309687-9309807 7.63e-02 6_[+2(5.33e-05)]_106 chr2L:8610961-8611081 8.72e-01 120 chrX:13253172-13253292 9.88e-01 120 chr3L:18398155-18398275 5.58e-03 28_[+3(8.49e-06)]_84 chr2R:12475909-12476029 6.08e-04 76_[+5(1.67e-05)]_36 chr3L:8925791-8925911 4.03e-02 85_[+2(5.33e-05)]_27 chr2R:10303690-10303810 1.14e-02 6_[+1(9.81e-05)]_106 chr2R:13261815-13261935 7.88e-01 120 chrX:3188547-3188667 3.69e-01 8_[+2(6.79e-05)]_104 chr3L:10745748-10745868 7.20e-01 120 chr2L:5303751-5303871 1.15e-01 34_[+1(2.96e-05)]_78 chr3R:26937645-26937765 9.27e-01 120 chr3L:12090314-12090434 1.53e-01 55_[+2(5.33e-05)]_57 chr2R:8150710-8150830 8.81e-06 16_[+1(5.54e-05)]_85_[+4(6.31e-06)]_\ 3 chr3R:10648980-10649100 1.00e+00 120 chr3R:14002123-14002243 9.47e-01 120 chrX:15591824-15591944 1.39e-01 120 chr2R:7063831-7063951 9.55e-01 120 chrX:6059273-6059393 6.68e-01 120 chr3R:23445394-23445514 1.17e-01 31_[+1(2.96e-05)]_28_[+1(5.54e-05)]_\ 45 chrX:6179537-6179657 7.17e-02 120 chr2L:13512312-13512432 9.99e-01 120 chr2L:7149033-7149153 2.60e-02 29_[+1(5.54e-05)]_83 chr2L:12369683-12369803 3.91e-02 120 chr3L:15977730-15977850 9.98e-01 120 chr3L:14194310-14194430 8.39e-01 120 chr3L:15532680-15532800 6.72e-02 98_[+1(7.99e-05)]_14 chr2L:5799615-5799735 2.60e-02 120 chr3L:772361-772481 1.14e-02 110_[+3(2.00e-05)]_2 chr3R:19011067-19011187 3.47e-01 4_[+2(5.33e-05)]_108 chr2L:20911552-20911672 1.89e-03 24_[+2(2.14e-05)]_4_[+1(5.54e-05)]_\ 76 chr2L:18822954-18823074 2.75e-01 73_[+1(5.54e-05)]_39 chrX:19107037-19107157 9.99e-01 120 chr3R:24544611-24544731 6.66e-01 120 chr2L:8746380-8746500 8.80e-01 120 chr3R:23922342-23922462 6.13e-02 14_[+1(7.99e-05)]_98 chr2L:9570812-9570932 2.59e-02 38_[+1(5.54e-05)]_74 chr3R:17231664-17231784 4.85e-01 120 chr3R:18438356-18438476 1.57e-02 120 chr2R:19146066-19146186 6.30e-01 120 chr3L:21476836-21476956 1.13e-01 120 chr2L:974217-974337 5.00e-01 120 chr3L:1139520-1139640 9.68e-01 120 chr3R:26130707-26130827 3.91e-03 28_[+1(5.54e-05)]_84 chr3R:27138106-27138226 9.01e-01 120 chr3L:3305610-3305730 8.75e-01 120 chrX:2166305-2166425 3.20e-01 120 chrX:1349370-1349490 2.50e-01 120 chr2L:3058789-3058909 5.67e-01 120 chr3R:21408516-21408636 6.88e-01 120 chr3R:10203722-10203842 1.64e-01 120 chr2L:8462002-8462122 9.16e-01 120 chr3R:10140353-10140473 5.87e-01 120 chrX:11451198-11451318 2.57e-01 120 chr2L:2864802-2864922 6.59e-02 120 chrX:17582804-17582924 1.24e-02 105_[+4(6.31e-06)]_7 chr3R:23803834-23803954 1.13e-01 120 chr2R:18774904-18775024 2.38e-01 68_[+2(5.33e-05)]_44 chr2L:13838756-13838876 1.57e-02 93_[+2(5.33e-05)]_19 chrX:17176684-17176804 7.45e-01 120 chr3R:26121925-26122045 7.42e-01 120 chr3R:25004909-25005029 8.86e-01 120 chr3R:31309446-31309566 2.54e-01 120 chr3L:8419086-8419206 7.07e-01 120 chrX:16105818-16105938 1.54e-02 45_[+5(1.05e-05)]_67 chr2R:21663202-21663322 1.03e-03 21_[+5(1.67e-05)]_91 chr2R:21049421-21049541 1.73e-01 120 chr3L:1647183-1647303 2.73e-01 120 chr2L:10967409-10967529 9.03e-01 120 chrX:16103749-16103869 4.27e-01 120 chr3L:16147881-16148001 6.92e-04 56_[+5(4.24e-06)]_56 chr3L:20731048-20731168 1.74e-02 41_[+1(7.99e-05)]_71 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chrX:11660603-11660723 7.09e-02 7_[+2(2.14e-05)]_9_[+2(2.14e-05)]_\ 25_[+2(5.33e-05)]_8_[+2(2.14e-05)]_9_[+2(2.14e-05)]_22 chr3R:31169097-31169217 3.56e-01 120 chr2R:8900149-8900269 2.56e-01 120 chr3L:765849-765969 9.95e-01 120 chr2L:12974395-12974515 3.28e-02 60_[+3(2.41e-05)]_52 chrX:5286023-5286143 1.20e-01 120 chr3L:1216616-1216736 9.33e-01 120 chr3R:27988920-27989040 9.82e-01 120 chrX:8141543-8141663 2.93e-02 37_[+3(2.41e-05)]_75 chr3R:23942887-23943007 1.09e-02 24_[+4(6.31e-06)]_88 chr3R:18215512-18215632 2.26e-01 120 chrX:10775814-10775934 9.99e-01 120 chrX:3068451-3068571 8.99e-02 120 chr2R:13055050-13055170 8.08e-02 97_[+2(8.24e-05)]_15 chr2R:24159300-24159420 1.05e-01 120 chr3L:2489550-2489670 3.80e-01 120 chr2R:16095043-16095163 9.43e-01 120 chr3R:25885263-25885383 1.58e-01 60_[+1(1.73e-05)]_52 chrX:11548827-11548947 9.81e-01 120 chr3R:30058034-30058154 6.09e-01 120 chr2R:11809529-11809649 1.80e-01 120 chr3L:5152604-5152724 4.27e-01 120 chr2L:6461605-6461725 5.24e-01 120 chr3L:19166624-19166744 4.50e-01 120 chr2R:14906348-14906468 3.93e-01 120 chrX:21242003-21242123 2.84e-02 21_[+2(5.33e-05)]_50_[+2(5.33e-05)]_\ 8_[+2(5.33e-05)]_17 chr3R:21350140-21350260 2.03e-03 91_[+2(8.24e-05)]_21 chr3R:14008977-14009097 9.97e-01 120 chr3R:11661813-11661933 4.65e-01 120 chr3L:6606093-6606213 1.49e-01 120 chr3L:14708148-14708268 2.33e-02 120 chr3R:26172205-26172325 5.71e-01 120 chr2L:18899951-18900071 5.88e-01 120 chr3L:5974685-5974805 1.45e-03 85_[+2(2.14e-05)]_27 chr3L:5988789-5988909 9.44e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************