******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm5-HLH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:26025511-26025631 1.0000 120 chr3L:5859155-5859275 1.0000 120 chrX:4563054-4563174 1.0000 120 chr3L:14979407-14979527 1.0000 120 chr3R:19344033-19344153 1.0000 120 chr2L:15458512-15458632 1.0000 120 chr2L:12457853-12457973 1.0000 120 chr3R:9024159-9024279 1.0000 120 chr3R:8682138-8682258 1.0000 120 chr3L:1431347-1431467 1.0000 120 chr3R:25629557-25629677 1.0000 120 chr2L:15457653-15457773 1.0000 120 chr3L:15848135-15848255 1.0000 120 chr2R:12776228-12776348 1.0000 120 chrX:18209036-18209156 1.0000 120 chr2R:14429540-14429660 1.0000 120 chr2R:8245266-8245386 1.0000 120 chr3L:1360216-1360336 1.0000 120 chr2R:8802109-8802229 1.0000 120 chr2R:20838478-20838598 1.0000 120 chr2L:9989928-9990048 1.0000 120 chr3R:10355090-10355210 1.0000 120 chrX:457157-457277 1.0000 120 chr3L:10335818-10335938 1.0000 120 chrX:392436-392556 1.0000 120 chr2R:13195020-13195140 1.0000 120 chrX:460738-460858 1.0000 120 chr3L:297143-297263 1.0000 120 chr2R:18666205-18666325 1.0000 120 chr3R:11350978-11351098 1.0000 120 chr2R:13555786-13555906 1.0000 120 chr2L:19037164-19037284 1.0000 120 chr3L:13408546-13408666 1.0000 120 chrX:369759-369879 1.0000 120 chrX:451243-451363 1.0000 120 chrX:19842428-19842548 1.0000 120 chr3R:25636757-25636877 1.0000 120 chr3L:18229435-18229555 1.0000 120 chr2R:15866280-15866400 1.0000 120 chr3L:13392039-13392159 1.0000 120 chr2L:15427027-15427147 1.0000 120 chr2R:18670362-18670482 1.0000 120 chr2R:25198567-25198687 1.0000 120 chrX:2408797-2408917 1.0000 120 chr2L:8361285-8361405 1.0000 120 chr2R:14431041-14431161 1.0000 120 chr3R:30474842-30474962 1.0000 120 chr2R:20604195-20604315 1.0000 120 chr2L:15470863-15470983 1.0000 120 chr3L:11019032-11019152 1.0000 120 chr2R:9694693-9694813 1.0000 120 chrX:4454098-4454218 1.0000 120 chr3R:25596503-25596623 1.0000 120 chr2L:15480878-15480998 1.0000 120 chr3R:19340785-19340905 1.0000 120 chr2R:13195220-13195340 1.0000 120 chr3R:25996890-25997010 1.0000 120 chr3L:3980136-3980256 1.0000 120 chr3L:15669874-15669994 1.0000 120 chr3L:18224802-18224922 1.0000 120 chr2L:17222266-17222386 1.0000 120 chr2R:18672272-18672392 1.0000 120 chr2L:20995929-20996049 1.0000 120 chr3L:21066622-21066742 1.0000 120 chr3L:2868792-2868912 1.0000 120 chr2R:11794169-11794289 1.0000 120 chr3L:12506191-12506311 1.0000 120 chr2L:17263408-17263528 1.0000 120 chr2R:21712391-21712511 1.0000 120 chrX:19868161-19868281 1.0000 120 chr3R:25628756-25628876 1.0000 120 chr3L:16743575-16743695 1.0000 120 chr3R:9038175-9038295 1.0000 120 chr3R:13973438-13973558 1.0000 120 chr3L:2853074-2853194 1.0000 120 chr3R:23971342-23971462 1.0000 120 chr3L:15799186-15799306 1.0000 120 chr3L:14975119-14975239 1.0000 120 chr2L:9454507-9454627 1.0000 120 chr3R:10284258-10284378 1.0000 120 chr2L:15327199-15327319 1.0000 120 chr3R:9030284-9030404 1.0000 120 chr2L:8809174-8809294 1.0000 120 chr3L:18269041-18269161 1.0000 120 chr3L:321577-321697 1.0000 120 chr2R:13196261-13196381 1.0000 120 chr2L:6204255-6204375 1.0000 120 chr3R:21654269-21654389 1.0000 120 chr3R:26029709-26029829 1.0000 120 chrX:18622899-18623019 1.0000 120 chr3L:18268219-18268339 1.0000 120 chr2R:15900842-15900962 1.0000 120 chr3R:7105517-7105637 1.0000 120 chr3R:21640531-21640651 1.0000 120 chrX:451822-451942 1.0000 120 chrX:4564191-4564311 1.0000 120 chr2L:1518213-1518333 1.0000 120 chr2L:15482146-15482266 1.0000 120 chr3L:20667516-20667636 1.0000 120 chr2R:13191977-13192097 1.0000 120 chr2R:7417117-7417237 1.0000 120 chr3R:19343374-19343494 1.0000 120 chr3R:14595590-14595710 1.0000 120 chr2L:5871088-5871208 1.0000 120 chr3L:16049212-16049332 1.0000 120 chr2L:17221599-17221719 1.0000 120 chr3L:19898659-19898779 1.0000 120 chrX:7574076-7574196 1.0000 120 chr2L:3588005-3588125 1.0000 120 chr2R:24335067-24335187 1.0000 120 chr3R:10580660-10580780 1.0000 120 chr2L:17565817-17565937 1.0000 120 chr2L:6531208-6531328 1.0000 120 chr2L:10543165-10543285 1.0000 120 chr2R:18674807-18674927 1.0000 120 chr3L:18094912-18095032 1.0000 120 chr3R:26001028-26001148 1.0000 120 chr3R:15584716-15584836 1.0000 120 chr2R:13042776-13042896 1.0000 120 chr3R:16389290-16389410 1.0000 120 chr3R:26023418-26023538 1.0000 120 chr3L:15785560-15785680 1.0000 120 chr3R:26027998-26028118 1.0000 120 chr2R:18532367-18532487 1.0000 120 chr3R:21644294-21644414 1.0000 120 chr3R:31606510-31606630 1.0000 120 chr3R:14597343-14597463 1.0000 120 chrX:383137-383257 1.0000 120 chrX:4562201-4562321 1.0000 120 chr2L:15741631-15741751 1.0000 120 chr2L:17564822-17564942 1.0000 120 chr4:1088754-1088874 1.0000 120 chr3R:25633396-25633516 1.0000 120 chr2L:1062551-1062671 1.0000 120 chr3L:16767051-16767171 1.0000 120 chr2R:22408442-22408562 1.0000 120 chr3L:11343982-11344102 1.0000 120 chr3R:30476497-30476617 1.0000 120 chr4:546306-546426 1.0000 120 chr3L:22456922-22457042 1.0000 120 chr3L:13674813-13674933 1.0000 120 chr2L:14265069-14265189 1.0000 120 chr3L:5653653-5653773 1.0000 120 chr2L:14451311-14451431 1.0000 120 chr3L:13135035-13135155 1.0000 120 chr2L:5469515-5469635 1.0000 120 chr2L:16270552-16270672 1.0000 120 chr2R:15353365-15353485 1.0000 120 chr3L:8925052-8925172 1.0000 120 chr2R:20600792-20600912 1.0000 120 chr3L:20789383-20789503 1.0000 120 chr3L:15847267-15847387 1.0000 120 chr2L:17743029-17743149 1.0000 120 chr2L:9988363-9988483 1.0000 120 chr2L:10548241-10548361 1.0000 120 chr2R:15886735-15886855 1.0000 120 chr3R:27597437-27597557 1.0000 120 chr2L:21628456-21628576 1.0000 120 chrX:4677572-4677692 1.0000 120 chr4:702960-703080 1.0000 120 chr3R:11354644-11354764 1.0000 120 chrX:7096071-7096191 1.0000 120 chr3R:7088783-7088903 1.0000 120 chr3L:16019748-16019868 1.0000 120 chr2L:4375109-4375229 1.0000 120 chr3R:16528429-16528549 1.0000 120 chr3L:14960642-14960762 1.0000 120 chr2L:9592821-9592941 1.0000 120 chr3L:19897876-19897996 1.0000 120 chr3R:25999493-25999613 1.0000 120 chr2L:2438767-2438887 1.0000 120 chr2R:9931918-9932038 1.0000 120 chr3L:11342774-11342894 1.0000 120 chr2R:14433403-14433523 1.0000 120 chr3L:14964300-14964420 1.0000 120 chr3L:11424483-11424603 1.0000 120 chr3L:14962941-14963061 1.0000 120 chr4:833119-833239 1.0000 120 chr2R:25205016-25205136 1.0000 120 chr3R:10602445-10602565 1.0000 120 chr2R:7486399-7486519 1.0000 120 chr3R:22780506-22780626 1.0000 120 chr2R:11398073-11398193 1.0000 120 chr3R:26026707-26026827 1.0000 120 chr2R:11401148-11401268 1.0000 120 chr2L:15485700-15485820 1.0000 120 chr2L:6229441-6229561 1.0000 120 chr3L:6840026-6840146 1.0000 120 chr3R:19345249-19345369 1.0000 120 chr3R:28856361-28856481 1.0000 120 chr2R:17476183-17476303 1.0000 120 chr2L:9988771-9988891 1.0000 120 chr2R:13188046-13188166 1.0000 120 chr3L:3349102-3349222 1.0000 120 chr2L:2461538-2461658 1.0000 120 chr2R:12730003-12730123 1.0000 120 chr2R:13623512-13623632 1.0000 120 chrX:19889048-19889168 1.0000 120 chr2R:21874149-21874269 1.0000 120 chr2L:5866906-5867026 1.0000 120 chr2R:14001919-14002039 1.0000 120 chrX:693510-693630 1.0000 120 chr2L:19339173-19339293 1.0000 120 chr3L:16475775-16475895 1.0000 120 chr2R:18675720-18675840 1.0000 120 chr2R:19258232-19258352 1.0000 120 chr3R:26001574-26001694 1.0000 120 chr3R:13971888-13972008 1.0000 120 chr2L:1421578-1421698 1.0000 120 chr2L:4363765-4363885 1.0000 120 chr3L:10966788-10966908 1.0000 120 chrX:3832374-3832494 1.0000 120 chrX:19842629-19842749 1.0000 120 chr3R:26009892-26010012 1.0000 120 chrX:17743627-17743747 1.0000 120 chr3R:17826272-17826392 1.0000 120 chr3L:20976564-20976684 1.0000 120 chr2R:12777306-12777426 1.0000 120 chr3R:19934973-19935093 1.0000 120 chr2R:15132456-15132576 1.0000 120 chrX:2987338-2987458 1.0000 120 chr2L:14431545-14431665 1.0000 120 chr3R:7106034-7106154 1.0000 120 chr3R:8277868-8277988 1.0000 120 chr3L:14967824-14967944 1.0000 120 chrX:8413083-8413203 1.0000 120 chr2L:8266867-8266987 1.0000 120 chr2R:19469019-19469139 1.0000 120 chrX:17509690-17509810 1.0000 120 chr2L:19937905-19938025 1.0000 120 chr3R:13817622-13817742 1.0000 120 chr3R:29547553-29547673 1.0000 120 chr3R:9027180-9027300 1.0000 120 chr2R:8657856-8657976 1.0000 120 chr2R:21523703-21523823 1.0000 120 chr3L:13074227-13074347 1.0000 120 chr2L:4370138-4370258 1.0000 120 chr3R:29266860-29266980 1.0000 120 chr2L:9193882-9194002 1.0000 120 chr3R:16552425-16552545 1.0000 120 chr3L:11344771-11344891 1.0000 120 chrX:9644949-9645069 1.0000 120 chr2R:20602687-20602807 1.0000 120 chr3L:18225509-18225629 1.0000 120 chr2R:24882656-24882776 1.0000 120 chr3L:14625536-14625656 1.0000 120 chr3R:4947920-4948040 1.0000 120 chr3R:26040017-26040137 1.0000 120 chr3R:25999706-25999826 1.0000 120 chr3R:31701962-31702082 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Esplm5-HLH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm5-HLH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.252 G 0.252 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.252 G 0.252 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-1 width = 8 sites = 140 llr = 1006 E-value = 8.5e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:a::1:1 pos.-specific C 1a:27::7 probability G 6::72:a1 matrix T 1::2:a:1 bits 2.0 ** * 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 ** *** (10.4 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24882656-24882776 2 1.58e-05 G GCAGCTGC ATTCTTTCTC chr2L:4370138-4370258 26 1.58e-05 TCAGCCAAAT GCAGCTGC CTTTAGCCAT chr2R:15132456-15132576 11 1.58e-05 CTGGCAAATG GCAGCTGC AACCTGCAGC chr3L:11424483-11424603 60 1.58e-05 TTCATCCAGT GCAGCTGC ATGAAATCTT chrX:7096071-7096191 38 1.58e-05 GGAAATAAAT GCAGCTGC cctctcctca chr2L:10548241-10548361 63 1.58e-05 CTGATCCCGG GCAGCTGC ACGCCGCATA chr2L:14451311-14451431 18 1.58e-05 TGACTTTCAA GCAGCTGC CGCTGCTCCG chr2R:22408442-22408562 72 1.58e-05 GGAGCTCACT GCAGCTGC AACGCGGCGC chr3R:31606510-31606630 78 1.58e-05 AGATCTTGCA GCAGCTGC ATTGGCATGT chr3L:16049212-16049332 33 1.58e-05 ACGTGTGCCG GCAGCTGC AGCAACTAGG chrX:18622899-18623019 35 1.58e-05 TGCATCTCGA GCAGCTGC GACAATGCGC chr2L:8809174-8809294 91 1.58e-05 TCACGCAAGC GCAGCTGC CTGGAGTTGC chr2R:11794169-11794289 16 1.58e-05 TAGAGCCGCT GCAGCTGC TGCCTGAAAA chr2R:18672272-18672392 7 1.58e-05 AGTCCT GCAGCTGC AAAGATTACC chr3R:25596503-25596623 23 1.58e-05 CCATAAAACA GCAGCTGC TAGCTGGCGC chrX:19842428-19842548 30 1.58e-05 GTCCTTAAAT GCAGCTGC CGCCGTCTGT chr2R:20838478-20838598 51 1.58e-05 AATCTAGACG GCAGCTGC CAGACTTTGG chr3R:25629557-25629677 21 1.58e-05 GATCGCATCT GCAGCTGC TGGCAAGTCA chr2R:13188046-13188166 43 3.13e-05 CGCTGAGGGA ACAGCTGC AACTTTTCGA chr2R:20600792-20600912 25 3.13e-05 ATAATGAGCG ACAGCTGC TTCAACTTCG chr2L:1518213-1518333 87 3.13e-05 ACCTGCCGGG ACAGCTGC AAGAGATGTT chr3R:9038175-9038295 48 3.13e-05 TTTATTGTCC ACAGCTGC ATGGGCATCT chr2R:25198567-25198687 78 3.13e-05 TTTTTTAGAA ACAGCTGC CATGCGACTG chrX:369759-369879 74 3.13e-05 CAGGTCACCA ACAGCTGC GTTTTACAGA chr3R:10355090-10355210 4 3.13e-05 CCA ACAGCTGC TGAAGATTGC chr2R:8245266-8245386 79 3.13e-05 TCTGCTTCGA ACAGCTGC TCTTCCTTTT chr2R:14429540-14429660 55 3.13e-05 CGCATGCGCG ACAGCTGC GCCGAGAAAT chr3L:5859155-5859275 79 3.13e-05 GCCAGAGAAA ACAGCTGC CACCAAACAA chr3R:7106034-7106154 98 4.71e-05 TCCCACAGTT GCAGGTGC ATGTTGCACA chrX:2987338-2987458 88 4.71e-05 GTGCCCAGGC GCAGGTGC ACTGATTACC chr2R:19258232-19258352 47 4.71e-05 CTGCAGGTCT GCAGGTGC CGAAGACAAA chr2L:4375109-4375229 58 4.71e-05 TTGCCATATT GCAGGTGC AGAGGGAGCA chr3L:15847267-15847387 81 4.71e-05 GGCTGCTGTT GCAGGTGC ACAAGTCAGC chr3L:12506191-12506311 38 4.71e-05 TGCATCTGCC GCAGGTGC GACTCCAGCA chrX:451243-451363 48 4.71e-05 GCGTCCATGG GCAGGTGC AACATTTACC chrX:17509690-17509810 102 6.29e-05 GGCAATGAAT GCACCTGC ATTGTCGTGG chr2R:19469019-19469139 42 6.29e-05 CAAGGGGGCG GCACCTGC GCCGCCCAAG chr3L:10966788-10966908 18 9.43e-05 TGTGTGTGTG GCATCTGC CGAGGGCTAC chrX:19889048-19889168 68 9.43e-05 GTCTTGTTTA GCATCTGC GCCGGGTGTT chr2L:9988771-9988891 108 9.43e-05 GAAACATGTT TCAGCTGC TGCGA chr3R:16528429-16528549 37 9.43e-05 ACTGGAAAAT GCATCTGC ATGTGCGGCA chr2R:15886735-15886855 26 9.43e-05 CAAGTTGGTC TCAGCTGC TCACTTTTTG chr2L:17564822-17564942 68 9.43e-05 TGTTTGCCGA TCAGCTGC TGCAAGACAA chr3R:15584716-15584836 107 9.43e-05 GCACAGGATA TCAGCTGC TGCCGC chr2R:18674807-18674927 102 9.43e-05 GCAGGATCGA TCAGCTGC ACTCGAATTG chr2L:3588005-3588125 48 9.43e-05 CCCATCAATT TCAGCTGC AGCAGCTGAA chr2R:13191977-13192097 87 9.43e-05 CGGCTTCGCC TCAGCTGC GACAACAGCT chr2L:15482146-15482266 33 9.43e-05 AGAGGATATC GCATCTGC GCCTGCGGGC chr2L:15457653-15457773 55 9.43e-05 TTCGACCAAT GCATCTGC ACAATTACGA chr3R:26040017-26040137 70 1.10e-04 CTACGAAGTT GCAGCTGT TCCTTGTGAA chr2R:18675720-18675840 83 1.10e-04 TCTACATCTG GCAGCTGT GTGGGGATGA chr2R:17476183-17476303 38 1.10e-04 AAAAATTGTT GCAGCTGT TTGAGTTGCG chr3R:21654269-21654389 21 1.10e-04 TTCAAGCAGA GCAGCTGT CCTAGAAGAG chr3L:321577-321697 5 1.10e-04 GGTG GCAGCTGT TTCTTTTTTC chr3R:30474842-30474962 47 1.10e-04 ACGTGCGAGG GCAGCTGT TGCACGCACC chrX:460738-460858 67 1.10e-04 CAGAGCGCCA GCAGCTGT CCTGATGCAA chrX:18209036-18209156 64 1.10e-04 CGAAAGTGTT GCAGCTGT ATGAGAGGGT chr3R:29547553-29547673 105 1.41e-04 TTGGCTGGTT CCAGCTGC CAGCTAGC chr3L:3349102-3349222 23 1.41e-04 GTTCCTGCTC CCAGCTGC CGCGCATGTG chr2R:11401148-11401268 51 1.41e-04 TCCCTTTTGG CCAGCTGC CGCCGACGCC chr2L:9592821-9592941 60 1.41e-04 CGAAGGTGTT CCAGCTGC CGATTCGATT chr3R:11354644-11354764 61 1.41e-04 GATTGCAACT GCAGCTGA CTTCGAATGT chr3L:13674813-13674933 107 1.41e-04 GGTTGCGGTT GCAGCTGA AGTAGC chr2L:5871088-5871208 7 1.41e-04 CAGGTC CCAGCTGC CTTTGTTGAG chr3L:16743575-16743695 49 1.41e-04 GGATCAGAAG GCAGCTGA TCCTTCCCTC chr2R:13195220-13195340 42 1.41e-04 AGGACATCTG CCAGCTGC ACAAATGGGC chr2L:19339173-19339293 39 1.73e-04 AGACAAGACT GCAGCTGG GCGAAGGTCG chr2L:17565817-17565937 57 1.73e-04 AAACCCACTG GCAGCTGG CCCGCCAGGA chr3R:25628756-25628876 25 1.73e-04 CGCCGCCCTG GCAGCTGG TCAATGGGAA chr3L:2868792-2868912 95 1.73e-04 TGAAATCGAG GCAGCTGG AGAAAGAGAC chr2L:9989928-9990048 102 1.73e-04 CATTCGAGGA GCAGCTGG AAAAAAAAAG chr2L:15458512-15458632 95 1.73e-04 CAGAATGCAG GCAgctgg ctcgcaggca chr2L:8266867-8266987 68 1.88e-04 TGATGTCTGA ACACCTGC ACAGGTGTTT chrX:8413083-8413203 50 1.88e-04 AGAAAAGTAA ACACCTGC CATAATATGT chr2L:21628456-21628576 58 2.04e-04 GTGCATTGTT ACATCTGC CGGCGTTTTT chr2L:9988363-9988483 74 2.04e-04 TGGCGAAGAA ACATCTGC CCCTATGCTC chr3R:19343374-19343494 107 2.04e-04 TGTTGAGGAA ACATCTGC TCCGCT chr2R:20604195-20604315 59 2.04e-04 TGTATGTCCA ACATCTGC CGCGTCGTTG chr2R:14431041-14431161 65 2.04e-04 AATCCACAGC ACATCTGC CCTTTCGAGC chr2L:15427027-15427147 108 2.04e-04 ATCTATTCCC ACATCTGC CGACT chr3R:21644294-21644414 41 2.19e-04 GCGCAGTGTA ACAGCTGT CACTATTATT chr3R:8277868-8277988 65 2.35e-04 CACTCGGGCG GCACGTGC TGCCTTCTGT chr3R:22780506-22780626 88 2.35e-04 TTTGCTTGCA GCACGTGC ACATGCGCCG chr2L:5469515-5469635 87 2.35e-04 AGGGGGCGTG GCACGTGC ACCCAAGTGC chr3L:5653653-5653773 48 2.35e-04 CGCCAGCGTG GCACGTGC CGAAATTAAT chr3R:26027998-26028118 62 2.35e-04 CACTCAGCAC GCACGTGC AGGGCACAAA chrX:4564191-4564311 75 2.35e-04 GCTTGAGAGG GCACGTGC CCCTGCTCAG chr3R:19340785-19340905 10 2.35e-04 TAGAACAGG GCACGTGC TCAGCTTGAC chrX:4563054-4563174 27 2.35e-04 ACATTGAGCG GCACGTGC CCCTTTCGGT chr3R:29266860-29266980 40 2.81e-04 CCTGAAGTCC ACAGCTGA TCGTAGCTCG chr2L:5866906-5867026 93 2.81e-04 CATCACAGTG ACAGCTGA AATAATTTCC chr4:702960-703080 22 2.81e-04 TGCTCCACGA GCATGTGC CGTGTCGTTG chr3L:8925052-8925172 107 2.81e-04 ATGTACAGCT ACAGCTGA GAACTT chr2L:15741631-15741751 18 2.81e-04 TGTACCGATG TCAGGTGC ATCGCATTCG chr3L:18269041-18269161 11 2.81e-04 ATGAAGTGTG GCATGTGC TGAAGATGTC chr3L:11019032-11019152 62 2.81e-04 TGAACTGGGA ACAGCTGA TGATCCAAAG chr3R:19344033-19344153 90 2.81e-04 TGCTTTAGTT GCATGTGC GGCATGTGCT chr2L:1421578-1421698 54 3.12e-04 TTAGGAGCGG GCAGGTGT GGATTCCCTT chr2R:7417117-7417237 13 3.12e-04 GGTCCGCACA GCAGGTGT CCGGCGGAGA chr3L:18229435-18229555 34 3.12e-04 AAAGGGGACA ACAGCTGG ACGACGACTG chr3L:16475775-16475895 76 4.06e-04 CGGATGGATG GCAGCAGC CTGCCGCCTG chr4:833119-833239 60 4.06e-04 GCGTGGCAAT GCACCTGT CGCGACCAAT chr2R:9931918-9932038 8 4.06e-04 agtagca gcagcagc agcaTCGGCC chr3R:25999493-25999613 47 4.06e-04 CTTTTTGCGG GCAGGTGA GCGAGTCGAT chr3R:26029709-26029829 71 4.06e-04 Cgcagcagcc gcagcagc agcagTGTGG chr2R:21523703-21523823 46 4.53e-04 CGCTTATCGT GCATCTGT TCAGATCGAG chr2R:12777306-12777426 69 4.53e-04 CCAACTTACC TCAGCTGT TGCAGCCGTT chr2L:2461538-2461658 72 4.53e-04 CAGCAGCCCT GCATCTGT GTGTTTTCCT chr3L:13074227-13074347 32 4.85e-04 AAATCAGTTT CCACCTGC ATCCTTTCGG chr3R:26026707-26026827 54 5.62e-04 CTTTGGCCGA ACACGTGC ACTGATTTCT chr3L:19897876-19897996 72 5.62e-04 ATACTCAGTA ACACGTGC GTAAATGTAC chrX:19868161-19868281 69 5.62e-04 TGCGGCCACT TCAGCTGA ATTACAAGGA chr2R:25205016-25205136 34 6.25e-04 AAGCCTACGA ACATGTGC ACAAGGACCC chr3L:20667516-20667636 5 6.25e-04 CTCT TCAGCTGG GTGTTTGTGC chr2R:18666205-18666325 34 6.25e-04 TGCAGCGGCG TCAGCTGG TGGACAAGTT chr3R:16552425-16552545 49 6.56e-04 CTGGTAAGTG CCAGCTGA AGGCGCGTGT chr2R:21874149-21874269 89 6.56e-04 CGGATCGCAG CCAGCTGA CACAACTTGG chr2L:17222266-17222386 71 6.56e-04 TCGGGCACAT CCAGCTGA GGAAAGCGGG chr2R:20602687-20602807 60 7.17e-04 CACAACAACA ACAGCAGC AAATGCCGTA chr2L:14431545-14431665 66 7.17e-04 TGGTCGAGTG ACAGCAGC CAGAAGGCCT chr3R:19934973-19935093 66 7.17e-04 GACATAGCCT CCAGCTGG CACAGCGAGT chr2L:17263408-17263528 104 7.17e-04 GGTCAGGAAG CCAGCTGG TTCCATGGT chr3L:1360216-1360336 16 7.48e-04 GTCGACGAAA ACATCTGT TCCCCGGGCC chr3R:9027180-9027300 29 7.79e-04 AGGTCACAGG TCACGTGC TGCCCCGCCC chr2L:15485700-15485820 23 7.79e-04 CACGACAAAG ACACCTGA CACGTGTCAT chr2R:12730003-12730123 7 8.72e-04 ACACAT GCAGATGC ACCCACTTTT chr2R:13195020-13195140 51 8.72e-04 GTGGCATTGA GCAGGAGC GAGCTGTAAA chrX:457157-457277 45 8.72e-04 TTGCTGTGCA GCAGGAGC AGATGTTTTT chr3R:10284258-10284378 86 9.65e-04 AGGATTCGTC GCACGTGA GAGAAAAGAG chr2L:9454507-9454627 18 9.65e-04 GAATCCTTCG CCACGTGC ACCGAGCCAT chr3R:9024159-9024279 81 9.65e-04 CAAGCACAGG GCACGTGA CTGTATTGAA chr3L:18225509-18225629 104 1.07e-03 CTGACAAGTT TCACCTGT CTGCATTTG chr3L:13135035-13135155 81 1.07e-03 TGCAGTGTTT TCACCTGT CAACAATATT chrX:7574076-7574196 98 1.07e-03 TTCAGTCTTA GCACGTGG CTACTGGTGG chr2R:15866280-15866400 34 1.07e-03 CATCCTTAGC TCACCTGT TACTTGTTTC chr3L:14964300-14964420 5 1.15e-03 GATT TCATCTGT TTTTTTTTTT chr2L:15480878-15480998 80 1.15e-03 GTATGTGTGT GCATGTGG ACCGGGTGCA chr2R:8802109-8802229 74 1.15e-03 CTCGATCATG GCATGTGG TAATTGCCCC chrX:383137-383257 46 1.28e-03 TCTTCCTGTT GCAGTTGC AGCTTGTCCA chr3L:15669874-15669994 16 1.38e-03 GAAAACTCAA ACAGATGC CAGTCCGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24882656-24882776 1.6e-05 1_[+1]_111 chr2L:4370138-4370258 1.6e-05 25_[+1]_87 chr2R:15132456-15132576 1.6e-05 10_[+1]_102 chr3L:11424483-11424603 1.6e-05 59_[+1]_53 chrX:7096071-7096191 1.6e-05 37_[+1]_75 chr2L:10548241-10548361 1.6e-05 62_[+1]_50 chr2L:14451311-14451431 1.6e-05 17_[+1]_95 chr2R:22408442-22408562 1.6e-05 71_[+1]_41 chr3R:31606510-31606630 1.6e-05 77_[+1]_35 chr3L:16049212-16049332 1.6e-05 32_[+1]_80 chrX:18622899-18623019 1.6e-05 34_[+1]_78 chr2L:8809174-8809294 1.6e-05 90_[+1]_22 chr2R:11794169-11794289 1.6e-05 15_[+1]_97 chr2R:18672272-18672392 1.6e-05 6_[+1]_106 chr3R:25596503-25596623 1.6e-05 22_[+1]_90 chrX:19842428-19842548 1.6e-05 29_[+1]_83 chr2R:20838478-20838598 1.6e-05 50_[+1]_62 chr3R:25629557-25629677 1.6e-05 20_[+1]_92 chr2R:13188046-13188166 3.1e-05 42_[+1]_70 chr2R:20600792-20600912 3.1e-05 24_[+1]_88 chr2L:1518213-1518333 3.1e-05 86_[+1]_26 chr3R:9038175-9038295 3.1e-05 47_[+1]_65 chr2R:25198567-25198687 3.1e-05 77_[+1]_35 chrX:369759-369879 3.1e-05 73_[+1]_39 chr3R:10355090-10355210 3.1e-05 3_[+1]_109 chr2R:8245266-8245386 3.1e-05 78_[+1]_34 chr2R:14429540-14429660 3.1e-05 54_[+1]_58 chr3L:5859155-5859275 3.1e-05 78_[+1]_34 chr3R:7106034-7106154 4.7e-05 97_[+1]_15 chrX:2987338-2987458 4.7e-05 87_[+1]_25 chr2R:19258232-19258352 4.7e-05 46_[+1]_66 chr2L:4375109-4375229 4.7e-05 57_[+1]_55 chr3L:15847267-15847387 4.7e-05 80_[+1]_32 chr3L:12506191-12506311 4.7e-05 37_[+1]_75 chrX:451243-451363 4.7e-05 47_[+1]_65 chrX:17509690-17509810 6.3e-05 101_[+1]_11 chr2R:19469019-19469139 6.3e-05 41_[+1]_71 chr3L:10966788-10966908 9.4e-05 17_[+1]_95 chrX:19889048-19889168 9.4e-05 67_[+1]_45 chr2L:9988771-9988891 9.4e-05 107_[+1]_5 chr3R:16528429-16528549 9.4e-05 36_[+1]_76 chr2R:15886735-15886855 9.4e-05 25_[+1]_87 chr2L:17564822-17564942 9.4e-05 67_[+1]_45 chr3R:15584716-15584836 9.4e-05 106_[+1]_6 chr2R:18674807-18674927 9.4e-05 101_[+1]_11 chr2L:3588005-3588125 9.4e-05 47_[+1]_65 chr2R:13191977-13192097 9.4e-05 86_[+1]_26 chr2L:15482146-15482266 9.4e-05 32_[+1]_80 chr2L:15457653-15457773 9.4e-05 54_[+1]_58 chr3R:26040017-26040137 0.00011 69_[+1]_43 chr2R:18675720-18675840 0.00011 82_[+1]_30 chr2R:17476183-17476303 0.00011 37_[+1]_75 chr3R:21654269-21654389 0.00011 20_[+1]_92 chr3L:321577-321697 0.00011 4_[+1]_108 chr3R:30474842-30474962 0.00011 46_[+1]_66 chrX:460738-460858 0.00011 66_[+1]_46 chrX:18209036-18209156 0.00011 63_[+1]_49 chr3R:29547553-29547673 0.00014 104_[+1]_8 chr3L:3349102-3349222 0.00014 22_[+1]_90 chr2R:11401148-11401268 0.00014 50_[+1]_62 chr2L:9592821-9592941 0.00014 59_[+1]_53 chr3R:11354644-11354764 0.00014 60_[+1]_52 chr3L:13674813-13674933 0.00014 106_[+1]_6 chr2L:5871088-5871208 0.00014 6_[+1]_106 chr3L:16743575-16743695 0.00014 48_[+1]_64 chr2R:13195220-13195340 0.00014 41_[+1]_71 chr2L:19339173-19339293 0.00017 38_[+1]_74 chr2L:17565817-17565937 0.00017 56_[+1]_56 chr3R:25628756-25628876 0.00017 24_[+1]_88 chr3L:2868792-2868912 0.00017 94_[+1]_18 chr2L:9989928-9990048 0.00017 101_[+1]_11 chr2L:15458512-15458632 0.00017 94_[+1]_18 chr2L:8266867-8266987 0.00019 67_[+1]_45 chrX:8413083-8413203 0.00019 49_[+1]_63 chr2L:21628456-21628576 0.0002 57_[+1]_55 chr2L:9988363-9988483 0.0002 73_[+1]_39 chr3R:19343374-19343494 0.0002 106_[+1]_6 chr2R:20604195-20604315 0.0002 58_[+1]_54 chr2R:14431041-14431161 0.0002 64_[+1]_48 chr2L:15427027-15427147 0.0002 107_[+1]_5 chr3R:21644294-21644414 0.00022 40_[+1]_72 chr3R:8277868-8277988 0.00023 64_[+1]_48 chr3R:22780506-22780626 0.00023 87_[+1]_25 chr2L:5469515-5469635 0.00023 86_[+1]_26 chr3L:5653653-5653773 0.00023 47_[+1]_65 chr3R:26027998-26028118 0.00023 61_[+1]_51 chrX:4564191-4564311 0.00023 74_[+1]_38 chr3R:19340785-19340905 0.00023 9_[+1]_103 chrX:4563054-4563174 0.00023 26_[+1]_86 chr3R:29266860-29266980 0.00028 39_[+1]_73 chr2L:5866906-5867026 0.00028 92_[+1]_20 chr4:702960-703080 0.00028 21_[+1]_91 chr3L:8925052-8925172 0.00028 106_[+1]_6 chr2L:15741631-15741751 0.00028 17_[+1]_95 chr3L:18269041-18269161 0.00028 10_[+1]_102 chr3L:11019032-11019152 0.00028 61_[+1]_51 chr3R:19344033-19344153 0.00028 89_[+1]_23 chr2L:1421578-1421698 0.00031 53_[+1]_59 chr2R:7417117-7417237 0.00031 12_[+1]_100 chr3L:18229435-18229555 0.00031 33_[+1]_79 chr3L:16475775-16475895 0.00041 75_[+1]_37 chr4:833119-833239 0.00041 59_[+1]_53 chr2R:9931918-9932038 0.00041 7_[+1]_105 chr3R:25999493-25999613 0.00041 46_[+1]_66 chr3R:26029709-26029829 0.00041 70_[+1]_42 chr2R:21523703-21523823 0.00045 45_[+1]_67 chr2R:12777306-12777426 0.00045 68_[+1]_44 chr2L:2461538-2461658 0.00045 71_[+1]_41 chr3L:13074227-13074347 0.00048 31_[+1]_81 chr3R:26026707-26026827 0.00056 53_[+1]_59 chr3L:19897876-19897996 0.00056 71_[+1]_41 chrX:19868161-19868281 0.00056 68_[+1]_44 chr2R:25205016-25205136 0.00062 33_[+1]_79 chr3L:20667516-20667636 0.00062 4_[+1]_108 chr2R:18666205-18666325 0.00062 33_[+1]_79 chr3R:16552425-16552545 0.00066 48_[+1]_64 chr2R:21874149-21874269 0.00066 88_[+1]_24 chr2L:17222266-17222386 0.00066 70_[+1]_42 chr2R:20602687-20602807 0.00072 59_[+1]_53 chr2L:14431545-14431665 0.00072 65_[+1]_47 chr3R:19934973-19935093 0.00072 65_[+1]_47 chr2L:17263408-17263528 0.00072 103_[+1]_9 chr3L:1360216-1360336 0.00075 15_[+1]_97 chr3R:9027180-9027300 0.00078 28_[+1]_84 chr2L:15485700-15485820 0.00078 22_[+1]_90 chr2R:12730003-12730123 0.00087 6_[+1]_106 chr2R:13195020-13195140 0.00087 50_[+1]_62 chrX:457157-457277 0.00087 44_[+1]_68 chr3R:10284258-10284378 0.00097 85_[+1]_27 chr2L:9454507-9454627 0.00097 17_[+1]_95 chr3R:9024159-9024279 0.00097 80_[+1]_32 chr3L:18225509-18225629 0.0011 103_[+1]_9 chr3L:13135035-13135155 0.0011 80_[+1]_32 chrX:7574076-7574196 0.0011 97_[+1]_15 chr2R:15866280-15866400 0.0011 33_[+1]_79 chr3L:14964300-14964420 0.0012 4_[+1]_108 chr2L:15480878-15480998 0.0012 79_[+1]_33 chr2R:8802109-8802229 0.0012 73_[+1]_39 chrX:383137-383257 0.0013 45_[+1]_67 chr3L:15669874-15669994 0.0014 15_[+1]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=140 chr2R:24882656-24882776 ( 2) GCAGCTGC 1 chr2L:4370138-4370258 ( 26) GCAGCTGC 1 chr2R:15132456-15132576 ( 11) GCAGCTGC 1 chr3L:11424483-11424603 ( 60) GCAGCTGC 1 chrX:7096071-7096191 ( 38) GCAGCTGC 1 chr2L:10548241-10548361 ( 63) GCAGCTGC 1 chr2L:14451311-14451431 ( 18) GCAGCTGC 1 chr2R:22408442-22408562 ( 72) GCAGCTGC 1 chr3R:31606510-31606630 ( 78) GCAGCTGC 1 chr3L:16049212-16049332 ( 33) GCAGCTGC 1 chrX:18622899-18623019 ( 35) GCAGCTGC 1 chr2L:8809174-8809294 ( 91) GCAGCTGC 1 chr2R:11794169-11794289 ( 16) GCAGCTGC 1 chr2R:18672272-18672392 ( 7) GCAGCTGC 1 chr3R:25596503-25596623 ( 23) GCAGCTGC 1 chrX:19842428-19842548 ( 30) GCAGCTGC 1 chr2R:20838478-20838598 ( 51) GCAGCTGC 1 chr3R:25629557-25629677 ( 21) GCAGCTGC 1 chr2R:13188046-13188166 ( 43) ACAGCTGC 1 chr2R:20600792-20600912 ( 25) ACAGCTGC 1 chr2L:1518213-1518333 ( 87) ACAGCTGC 1 chr3R:9038175-9038295 ( 48) ACAGCTGC 1 chr2R:25198567-25198687 ( 78) ACAGCTGC 1 chrX:369759-369879 ( 74) ACAGCTGC 1 chr3R:10355090-10355210 ( 4) ACAGCTGC 1 chr2R:8245266-8245386 ( 79) ACAGCTGC 1 chr2R:14429540-14429660 ( 55) ACAGCTGC 1 chr3L:5859155-5859275 ( 79) ACAGCTGC 1 chr3R:7106034-7106154 ( 98) GCAGGTGC 1 chrX:2987338-2987458 ( 88) GCAGGTGC 1 chr2R:19258232-19258352 ( 47) GCAGGTGC 1 chr2L:4375109-4375229 ( 58) GCAGGTGC 1 chr3L:15847267-15847387 ( 81) GCAGGTGC 1 chr3L:12506191-12506311 ( 38) GCAGGTGC 1 chrX:451243-451363 ( 48) GCAGGTGC 1 chrX:17509690-17509810 ( 102) GCACCTGC 1 chr2R:19469019-19469139 ( 42) GCACCTGC 1 chr3L:10966788-10966908 ( 18) GCATCTGC 1 chrX:19889048-19889168 ( 68) GCATCTGC 1 chr2L:9988771-9988891 ( 108) TCAGCTGC 1 chr3R:16528429-16528549 ( 37) GCATCTGC 1 chr2R:15886735-15886855 ( 26) TCAGCTGC 1 chr2L:17564822-17564942 ( 68) TCAGCTGC 1 chr3R:15584716-15584836 ( 107) TCAGCTGC 1 chr2R:18674807-18674927 ( 102) TCAGCTGC 1 chr2L:3588005-3588125 ( 48) TCAGCTGC 1 chr2R:13191977-13192097 ( 87) TCAGCTGC 1 chr2L:15482146-15482266 ( 33) GCATCTGC 1 chr2L:15457653-15457773 ( 55) GCATCTGC 1 chr3R:26040017-26040137 ( 70) GCAGCTGT 1 chr2R:18675720-18675840 ( 83) GCAGCTGT 1 chr2R:17476183-17476303 ( 38) GCAGCTGT 1 chr3R:21654269-21654389 ( 21) GCAGCTGT 1 chr3L:321577-321697 ( 5) GCAGCTGT 1 chr3R:30474842-30474962 ( 47) GCAGCTGT 1 chrX:460738-460858 ( 67) GCAGCTGT 1 chrX:18209036-18209156 ( 64) GCAGCTGT 1 chr3R:29547553-29547673 ( 105) CCAGCTGC 1 chr3L:3349102-3349222 ( 23) CCAGCTGC 1 chr2R:11401148-11401268 ( 51) CCAGCTGC 1 chr2L:9592821-9592941 ( 60) CCAGCTGC 1 chr3R:11354644-11354764 ( 61) GCAGCTGA 1 chr3L:13674813-13674933 ( 107) GCAGCTGA 1 chr2L:5871088-5871208 ( 7) CCAGCTGC 1 chr3L:16743575-16743695 ( 49) GCAGCTGA 1 chr2R:13195220-13195340 ( 42) CCAGCTGC 1 chr2L:19339173-19339293 ( 39) GCAGCTGG 1 chr2L:17565817-17565937 ( 57) GCAGCTGG 1 chr3R:25628756-25628876 ( 25) GCAGCTGG 1 chr3L:2868792-2868912 ( 95) GCAGCTGG 1 chr2L:9989928-9990048 ( 102) GCAGCTGG 1 chr2L:15458512-15458632 ( 95) GCAGCTGG 1 chr2L:8266867-8266987 ( 68) ACACCTGC 1 chrX:8413083-8413203 ( 50) ACACCTGC 1 chr2L:21628456-21628576 ( 58) ACATCTGC 1 chr2L:9988363-9988483 ( 74) ACATCTGC 1 chr3R:19343374-19343494 ( 107) ACATCTGC 1 chr2R:20604195-20604315 ( 59) ACATCTGC 1 chr2R:14431041-14431161 ( 65) ACATCTGC 1 chr2L:15427027-15427147 ( 108) ACATCTGC 1 chr3R:21644294-21644414 ( 41) ACAGCTGT 1 chr3R:8277868-8277988 ( 65) GCACGTGC 1 chr3R:22780506-22780626 ( 88) GCACGTGC 1 chr2L:5469515-5469635 ( 87) GCACGTGC 1 chr3L:5653653-5653773 ( 48) GCACGTGC 1 chr3R:26027998-26028118 ( 62) GCACGTGC 1 chrX:4564191-4564311 ( 75) GCACGTGC 1 chr3R:19340785-19340905 ( 10) GCACGTGC 1 chrX:4563054-4563174 ( 27) GCACGTGC 1 chr3R:29266860-29266980 ( 40) ACAGCTGA 1 chr2L:5866906-5867026 ( 93) ACAGCTGA 1 chr4:702960-703080 ( 22) GCATGTGC 1 chr3L:8925052-8925172 ( 107) ACAGCTGA 1 chr2L:15741631-15741751 ( 18) TCAGGTGC 1 chr3L:18269041-18269161 ( 11) GCATGTGC 1 chr3L:11019032-11019152 ( 62) ACAGCTGA 1 chr3R:19344033-19344153 ( 90) GCATGTGC 1 chr2L:1421578-1421698 ( 54) GCAGGTGT 1 chr2R:7417117-7417237 ( 13) GCAGGTGT 1 chr3L:18229435-18229555 ( 34) ACAGCTGG 1 chr3L:16475775-16475895 ( 76) GCAGCAGC 1 chr4:833119-833239 ( 60) GCACCTGT 1 chr2R:9931918-9932038 ( 8) GCAGCAGC 1 chr3R:25999493-25999613 ( 47) GCAGGTGA 1 chr3R:26029709-26029829 ( 71) GCAGCAGC 1 chr2R:21523703-21523823 ( 46) GCATCTGT 1 chr2R:12777306-12777426 ( 69) TCAGCTGT 1 chr2L:2461538-2461658 ( 72) GCATCTGT 1 chr3L:13074227-13074347 ( 32) CCACCTGC 1 chr3R:26026707-26026827 ( 54) ACACGTGC 1 chr3L:19897876-19897996 ( 72) ACACGTGC 1 chrX:19868161-19868281 ( 69) TCAGCTGA 1 chr2R:25205016-25205136 ( 34) ACATGTGC 1 chr3L:20667516-20667636 ( 5) TCAGCTGG 1 chr2R:18666205-18666325 ( 34) TCAGCTGG 1 chr3R:16552425-16552545 ( 49) CCAGCTGA 1 chr2R:21874149-21874269 ( 89) CCAGCTGA 1 chr2L:17222266-17222386 ( 71) CCAGCTGA 1 chr2R:20602687-20602807 ( 60) ACAGCAGC 1 chr2L:14431545-14431665 ( 66) ACAGCAGC 1 chr3R:19934973-19935093 ( 66) CCAGCTGG 1 chr2L:17263408-17263528 ( 104) CCAGCTGG 1 chr3L:1360216-1360336 ( 16) ACATCTGT 1 chr3R:9027180-9027300 ( 29) TCACGTGC 1 chr2L:15485700-15485820 ( 23) ACACCTGA 1 chr2R:12730003-12730123 ( 7) GCAGATGC 1 chr2R:13195020-13195140 ( 51) GCAGGAGC 1 chrX:457157-457277 ( 45) GCAGGAGC 1 chr3R:10284258-10284378 ( 86) GCACGTGA 1 chr2L:9454507-9454627 ( 18) CCACGTGC 1 chr3R:9024159-9024279 ( 81) GCACGTGA 1 chr3L:18225509-18225629 ( 104) TCACCTGT 1 chr3L:13135035-13135155 ( 81) TCACCTGT 1 chrX:7574076-7574196 ( 98) GCACGTGG 1 chr2R:15866280-15866400 ( 34) TCACCTGT 1 chr3L:14964300-14964420 ( 5) TCATCTGT 1 chr2L:15480878-15480998 ( 80) GCATGTGG 1 chr2R:8802109-8802229 ( 74) GCATGTGG 1 chrX:383137-383257 ( 46) GCAGTTGC 1 chr3L:15669874-15669994 ( 16) ACAGATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.03906 E= 8.5e-054 -11 -144 115 -104 -1377 199 -1377 -1377 202 -1377 -1377 -1377 -1377 -50 142 -73 -411 155 -5 -512 -230 -1377 -1377 193 -1377 -1377 199 -1377 -120 137 -133 -81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 8.5e-054 0.228571 0.092857 0.557143 0.121429 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.178571 0.671429 0.150000 0.014286 0.735714 0.242857 0.007143 0.050000 0.000000 0.000000 0.950000 0.000000 0.000000 1.000000 0.000000 0.107143 0.650000 0.100000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CAG[CG]TGC -------------------------------------------------------------------------------- Time 7.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACAAA MEME-2 width = 8 sites = 28 llr = 258 E-value = 1.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 99a92aaa pos.-specific C 1::16::: probability G ::::1::: matrix T :1::1::: bits 2.0 * *** 1.8 * *** 1.6 **** *** 1.4 **** *** Relative 1.2 **** *** Entropy 1.0 **** *** (13.3 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13817622-13817742 84 1.41e-05 TCCGCCAGCG AAAACAAA TTCAATTCAC chr2R:13188046-13188166 14 1.41e-05 TGGCAGTCAC AAAACAAA CAGAGAAGGA chr2R:14433403-14433523 18 1.41e-05 aaaaaaaaaa aaaacaaa aacacaaaaG chrX:7096071-7096191 94 1.41e-05 TGCAACTTGA AAAACAAA AAATACGGCA chr2L:16270552-16270672 59 1.41e-05 CTTCTTCCAC AAAACAAA TGAAGTTTTA chr3L:15785560-15785680 111 1.41e-05 AAGATGACAC AAAACAAA AA chr2R:13042776-13042896 24 1.41e-05 AAGAGTAGTC AAAACAAA GGGAAAAGCG chr2L:8361285-8361405 9 1.41e-05 GTGGTTCT AAAACAAA AGTCGATATG chr3L:13392039-13392159 25 1.41e-05 TGTGATCTGG AAAACAAA ACGAAAGGTG chr2L:15458512-15458632 47 1.41e-05 TCTCTTAATG AAAACAAA CAATGAGACG chrX:19842629-19842749 67 2.80e-05 aaaaaaagaa aaaaaaaa TGCCGATGAC chr2R:17476183-17476303 22 2.80e-05 CGGCAACCAA AAAAAAAA AAATTGTTGC chr2L:21628456-21628576 40 2.80e-05 ATTAAAACTA AAAAAAAA GTGCATTGTT chr3R:14597343-14597463 113 2.80e-05 TTAATATCAC AAAAAAAA chr2L:9989928-9990048 111 2.80e-05 AGCAGCTGGA AAAAAAAA GT chr3L:11344771-11344891 37 4.21e-05 TGCAGTCCGT AAAAGAAA GCCGATACGA chr3L:14962941-14963061 30 4.21e-05 aCTAAAGTAA AAAAGAAA ATAAAATTTA chr2L:15327199-15327319 55 4.21e-05 TGAGTAATTG AAAAGAAA GAAGCGTGCG chrX:3832374-3832494 82 8.49e-05 aacaggcaga caaacaaa caaacggtgc chrX:19889048-19889168 91 8.49e-05 GTGTTATTTA AAAATAAA AGAGGAAGAA chr4:833119-833239 101 8.49e-05 AGCAACCGGC ATAACAAA CCGCGATGAT chr3R:11354644-11354764 97 8.49e-05 GGATCTTCGG CAAACAAA GCAGCCACAG chr2L:17565817-17565937 17 8.49e-05 ATCAGCAAGG ATAACAAA TATGCCAGGC chr2L:20995929-20996049 8 8.49e-05 CTCTGAG CAAACAAA GGAGCGTGGT chr2L:15457653-15457773 8 8.49e-05 GGTAGGA ATAACAAA GACAACGGCA chr3L:14979407-14979527 102 8.49e-05 CACCTAAACA AAAATAAA TGCACCAGAC chr3L:14967824-14967944 25 9.93e-05 ACCGAGCCAA AAACCAAA ACTCTGAAGA chrX:451822-451942 68 9.93e-05 TATCAAGTAG AAACCAAA CAGGTAGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13817622-13817742 1.4e-05 83_[+2]_29 chr2R:13188046-13188166 1.4e-05 13_[+2]_99 chr2R:14433403-14433523 1.4e-05 17_[+2]_95 chrX:7096071-7096191 1.4e-05 93_[+2]_19 chr2L:16270552-16270672 1.4e-05 58_[+2]_54 chr3L:15785560-15785680 1.4e-05 110_[+2]_2 chr2R:13042776-13042896 1.4e-05 23_[+2]_89 chr2L:8361285-8361405 1.4e-05 8_[+2]_104 chr3L:13392039-13392159 1.4e-05 24_[+2]_88 chr2L:15458512-15458632 1.4e-05 46_[+2]_66 chrX:19842629-19842749 2.8e-05 66_[+2]_46 chr2R:17476183-17476303 2.8e-05 21_[+2]_91 chr2L:21628456-21628576 2.8e-05 39_[+2]_73 chr3R:14597343-14597463 2.8e-05 112_[+2] chr2L:9989928-9990048 2.8e-05 110_[+2]_2 chr3L:11344771-11344891 4.2e-05 36_[+2]_76 chr3L:14962941-14963061 4.2e-05 29_[+2]_83 chr2L:15327199-15327319 4.2e-05 54_[+2]_58 chrX:3832374-3832494 8.5e-05 81_[+2]_31 chrX:19889048-19889168 8.5e-05 90_[+2]_22 chr4:833119-833239 8.5e-05 100_[+2]_12 chr3R:11354644-11354764 8.5e-05 96_[+2]_16 chr2L:17565817-17565937 8.5e-05 16_[+2]_96 chr2L:20995929-20996049 8.5e-05 7_[+2]_105 chr2L:15457653-15457773 8.5e-05 7_[+2]_105 chr3L:14979407-14979527 8.5e-05 101_[+2]_11 chr3L:14967824-14967944 9.9e-05 24_[+2]_88 chrX:451822-451942 9.9e-05 67_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACAAA width=8 seqs=28 chr3R:13817622-13817742 ( 84) AAAACAAA 1 chr2R:13188046-13188166 ( 14) AAAACAAA 1 chr2R:14433403-14433523 ( 18) AAAACAAA 1 chrX:7096071-7096191 ( 94) AAAACAAA 1 chr2L:16270552-16270672 ( 59) AAAACAAA 1 chr3L:15785560-15785680 ( 111) AAAACAAA 1 chr2R:13042776-13042896 ( 24) AAAACAAA 1 chr2L:8361285-8361405 ( 9) AAAACAAA 1 chr3L:13392039-13392159 ( 25) AAAACAAA 1 chr2L:15458512-15458632 ( 47) AAAACAAA 1 chrX:19842629-19842749 ( 67) AAAAAAAA 1 chr2R:17476183-17476303 ( 22) AAAAAAAA 1 chr2L:21628456-21628576 ( 40) AAAAAAAA 1 chr3R:14597343-14597463 ( 113) AAAAAAAA 1 chr2L:9989928-9990048 ( 111) AAAAAAAA 1 chr3L:11344771-11344891 ( 37) AAAAGAAA 1 chr3L:14962941-14963061 ( 30) AAAAGAAA 1 chr2L:15327199-15327319 ( 55) AAAAGAAA 1 chrX:3832374-3832494 ( 82) CAAACAAA 1 chrX:19889048-19889168 ( 91) AAAATAAA 1 chr4:833119-833239 ( 101) ATAACAAA 1 chr3R:11354644-11354764 ( 97) CAAACAAA 1 chr2L:17565817-17565937 ( 17) ATAACAAA 1 chr2L:20995929-20996049 ( 8) CAAACAAA 1 chr2L:15457653-15457773 ( 8) ATAACAAA 1 chr3L:14979407-14979527 ( 102) AAAATAAA 1 chr3L:14967824-14967944 ( 25) AAACCAAA 1 chrX:451822-451942 ( 68) AAACCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 1.8e-003 185 -123 -1145 -1145 185 -1145 -1145 -122 202 -1145 -1145 -1145 191 -182 -1145 -1145 -47 135 -123 -180 202 -1145 -1145 -1145 202 -1145 -1145 -1145 202 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.8e-003 0.892857 0.107143 0.000000 0.000000 0.892857 0.000000 0.000000 0.107143 1.000000 0.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.178571 0.642857 0.107143 0.071429 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAACAAA -------------------------------------------------------------------------------- Time 14.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACAAYA MEME-3 width = 8 sites = 16 llr = 160 E-value = 5.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :aa2aa:a pos.-specific C a::8::6: probability G :::::::: matrix T ::::::4: bits 2.0 *** ** * 1.8 *** ** * 1.6 *** ** * 1.4 *** ** * Relative 1.2 ****** * Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAACAACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26040017-26040137 93 1.47e-05 GTGAAAAAGA CAACAACA CCGGCGTTTA chr2R:20602687-20602807 52 1.47e-05 GACACACACA CAACAACA ACAGCAGCAA chr3L:6840026-6840146 45 1.47e-05 CGGCAAAAGT CAACAACA CAGTTCGAAA chr2R:15886735-15886855 10 1.47e-05 ATCTACAAA CAACAACA AGTTGGTCTC chr2R:22408442-22408562 35 1.47e-05 GCGACCAGGA CAACAACA AAGCGCTGAG chr2L:1062551-1062671 111 1.47e-05 CAAAGAATTT CAACAACA AC chr2R:24335067-24335187 77 1.47e-05 CAGCGAGAAG CAACAACA CCACGCCCGC chr2L:19339173-19339293 80 2.93e-05 TAACAGGGCC CAACAATA GGCCATGATC chr3L:13135035-13135155 89 2.93e-05 TTTCACCTGT CAACAATA TTTCATGCCC chr2L:14265069-14265189 92 2.93e-05 GGATTGAGGA CAACAATA GCGCCAGGGT chr3R:26023418-26023538 95 2.93e-05 GTAAATTGAT CAACAATA AGACCAAAAA chr2L:10543165-10543285 27 2.93e-05 GTAAAGCAAA CAACAATA AATTGAGTCA chrX:19842428-19842548 58 2.93e-05 ACAATATAAT CAACAATA AATCGGAACC chrX:19842629-19842749 11 4.37e-05 CCACTGAGCT CAAAAACA CACAATGCAA chr2R:14433403-14433523 1 4.37e-05 . Caaaaaca aaaaaaaaaa chrX:369759-369879 21 4.37e-05 TGAAAATGAG CAAAAACA CTCAGAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26040017-26040137 1.5e-05 92_[+3]_20 chr2R:20602687-20602807 1.5e-05 51_[+3]_61 chr3L:6840026-6840146 1.5e-05 44_[+3]_68 chr2R:15886735-15886855 1.5e-05 9_[+3]_103 chr2R:22408442-22408562 1.5e-05 34_[+3]_78 chr2L:1062551-1062671 1.5e-05 110_[+3]_2 chr2R:24335067-24335187 1.5e-05 76_[+3]_36 chr2L:19339173-19339293 2.9e-05 79_[+3]_33 chr3L:13135035-13135155 2.9e-05 88_[+3]_24 chr2L:14265069-14265189 2.9e-05 91_[+3]_21 chr3R:26023418-26023538 2.9e-05 94_[+3]_18 chr2L:10543165-10543285 2.9e-05 26_[+3]_86 chrX:19842428-19842548 2.9e-05 57_[+3]_55 chrX:19842629-19842749 4.4e-05 10_[+3]_102 chr2R:14433403-14433523 4.4e-05 [+3]_112 chrX:369759-369879 4.4e-05 20_[+3]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACAAYA width=8 seqs=16 chr3R:26040017-26040137 ( 93) CAACAACA 1 chr2R:20602687-20602807 ( 52) CAACAACA 1 chr3L:6840026-6840146 ( 45) CAACAACA 1 chr2R:15886735-15886855 ( 10) CAACAACA 1 chr2R:22408442-22408562 ( 35) CAACAACA 1 chr2L:1062551-1062671 ( 111) CAACAACA 1 chr2R:24335067-24335187 ( 77) CAACAACA 1 chr2L:19339173-19339293 ( 80) CAACAATA 1 chr3L:13135035-13135155 ( 89) CAACAATA 1 chr2L:14265069-14265189 ( 92) CAACAATA 1 chr3R:26023418-26023538 ( 95) CAACAATA 1 chr2L:10543165-10543285 ( 27) CAACAATA 1 chrX:19842428-19842548 ( 58) CAACAATA 1 chrX:19842629-19842749 ( 11) CAAAAACA 1 chr2R:14433403-14433523 ( 1) CAAAAACA 1 chrX:369759-369879 ( 21) CAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 5.7e+001 -1064 199 -1064 -1064 202 -1064 -1064 -1064 202 -1064 -1064 -1064 -40 169 -1064 -1064 202 -1064 -1064 -1064 202 -1064 -1064 -1064 -1064 131 -1064 59 202 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.7e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACAAYA MEME-3 regular expression -------------------------------------------------------------------------------- CAACAA[CT]A -------------------------------------------------------------------------------- Time 20.18 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACACAC MEME-4 width = 8 sites = 32 llr = 279 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:a:a:81 pos.-specific C :a:a:a:5 probability G 8:::::32 matrix T :::::::2 bits 2.0 *** * 1.8 ***** 1.6 ***** 1.4 ***** Relative 1.2 ******* Entropy 1.0 ******* (12.6 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GCACACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25999706-25999826 55 1.53e-05 TCGAATGCCA GCACACAC GACGACGACG chrX:693510-693630 53 1.53e-05 CAGATACAAG GCACACAC TCACATGTGT chr2L:5866906-5867026 34 1.53e-05 tcacacagac gcacacac acacacacac chrX:19889048-19889168 29 1.53e-05 tgttgctgCA GCACACAC CTTTGCACTT chr3L:11342774-11342894 49 1.53e-05 TGGTAAGCAC GCACACAC ACGGTTTTCC chr2R:24335067-24335187 93 1.53e-05 CACCACGCCC GCACACAC CGGCACTCCG chr3R:23971342-23971462 61 1.53e-05 CCTCCCCCCT GCACACAC AAAGATAATT chr3L:2868792-2868912 44 1.53e-05 AGGCACTTGG GCACACAC ACACTCCACT chr3R:31701962-31702082 42 3.06e-05 CAAAAGGCAA GCACACAG ACACACCATT chr2L:19937905-19938025 103 3.06e-05 TATGTGCACT GCACACAG GACCAGCCCA chr3R:7105517-7105637 38 3.06e-05 ACAACAGCAA GCACACAG GCACCAAAAC chr3L:321577-321697 46 3.06e-05 AGGCAAGAAG GCACACAG GATGTGCGTG chrX:3832374-3832494 36 4.63e-05 TGGCCGTGTT GCACACGC GCCAAACGCG chrX:383137-383257 13 4.63e-05 CTCGAGACAG GCACACGC GTTGTACATG chr3R:16389290-16389410 53 4.63e-05 ACTCACCGGG GCACACGC CGCAACGGTT chr3R:19344033-19344153 57 4.63e-05 ATTTGGTAAG GCACACGC AGGATATGCG chr3L:19897876-19897996 56 6.14e-05 CCGCATACTC GCACACAT ACTCAGTAAC chr3L:8925052-8925172 91 6.14e-05 AAATAACTAG GCACACAT GTACAGCTAC chr3L:2853074-2853194 85 6.14e-05 GCGCAGGCGC GCACACAT GTTGCAAGAA chr2L:17263408-17263528 22 6.14e-05 AAACTCGGGC GCACACAT ATACCTGCAG chr2L:17564822-17564942 90 7.65e-05 AGACAACAAT GCACACAA TGCCGCTTTA chr3L:15785560-15785680 14 7.65e-05 GAAAACGTGG GCACACAA AGAACCACAA chr2R:20602687-20602807 43 9.15e-05 GCCTGCCGTG ACACACAC ACAACAACAA chr3L:22456922-22457042 49 9.15e-05 acacgcttac acacacac atgcacacCC chr3R:21640531-21640651 33 9.15e-05 ACTACCGCTG ACACACAC AATCAGCAAT chr2L:10548241-10548361 39 1.07e-04 GCATCCCCAT GCACACGG GGGCAGCTGA chr3L:14962941-14963061 63 1.23e-04 GGAAAACCTC GCACACGT GTTTACAAAG chr2L:20995929-20996049 105 1.53e-04 ATGTATACAT ACACACAG TAGCCACC chr2L:15470863-15470983 111 1.53e-04 AGCCGGCCCA GCACACGA AC chr2R:22408442-22408562 17 1.68e-04 CAGGGGATAA ACACACGC GCGACCAGGA chr2L:17743029-17743149 67 1.98e-04 GTGGCACTCG ACACACAA CAATGGCCAA chr3R:30474842-30474962 56 2.13e-04 GGCAGCTGTT GCACGCAC CTATGCTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25999706-25999826 1.5e-05 54_[+4]_58 chrX:693510-693630 1.5e-05 52_[+4]_60 chr2L:5866906-5867026 1.5e-05 33_[+4]_79 chrX:19889048-19889168 1.5e-05 28_[+4]_84 chr3L:11342774-11342894 1.5e-05 48_[+4]_64 chr2R:24335067-24335187 1.5e-05 92_[+4]_20 chr3R:23971342-23971462 1.5e-05 60_[+4]_52 chr3L:2868792-2868912 1.5e-05 43_[+4]_69 chr3R:31701962-31702082 3.1e-05 41_[+4]_71 chr2L:19937905-19938025 3.1e-05 102_[+4]_10 chr3R:7105517-7105637 3.1e-05 37_[+4]_75 chr3L:321577-321697 3.1e-05 45_[+4]_67 chrX:3832374-3832494 4.6e-05 35_[+4]_77 chrX:383137-383257 4.6e-05 12_[+4]_100 chr3R:16389290-16389410 4.6e-05 52_[+4]_60 chr3R:19344033-19344153 4.6e-05 56_[+4]_56 chr3L:19897876-19897996 6.1e-05 55_[+4]_57 chr3L:8925052-8925172 6.1e-05 90_[+4]_22 chr3L:2853074-2853194 6.1e-05 84_[+4]_28 chr2L:17263408-17263528 6.1e-05 21_[+4]_91 chr2L:17564822-17564942 7.6e-05 89_[+4]_23 chr3L:15785560-15785680 7.6e-05 13_[+4]_99 chr2R:20602687-20602807 9.1e-05 42_[+4]_70 chr3L:22456922-22457042 9.1e-05 48_[+4]_64 chr3R:21640531-21640651 9.1e-05 32_[+4]_80 chr2L:10548241-10548361 0.00011 38_[+4]_74 chr3L:14962941-14963061 0.00012 62_[+4]_50 chr2L:20995929-20996049 0.00015 104_[+4]_8 chr2L:15470863-15470983 0.00015 110_[+4]_2 chr2R:22408442-22408562 0.00017 16_[+4]_96 chr2L:17743029-17743149 0.0002 66_[+4]_46 chr3R:30474842-30474962 0.00021 55_[+4]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACACAC width=8 seqs=32 chr3R:25999706-25999826 ( 55) GCACACAC 1 chrX:693510-693630 ( 53) GCACACAC 1 chr2L:5866906-5867026 ( 34) GCACACAC 1 chrX:19889048-19889168 ( 29) GCACACAC 1 chr3L:11342774-11342894 ( 49) GCACACAC 1 chr2R:24335067-24335187 ( 93) GCACACAC 1 chr3R:23971342-23971462 ( 61) GCACACAC 1 chr3L:2868792-2868912 ( 44) GCACACAC 1 chr3R:31701962-31702082 ( 42) GCACACAG 1 chr2L:19937905-19938025 ( 103) GCACACAG 1 chr3R:7105517-7105637 ( 38) GCACACAG 1 chr3L:321577-321697 ( 46) GCACACAG 1 chrX:3832374-3832494 ( 36) GCACACGC 1 chrX:383137-383257 ( 13) GCACACGC 1 chr3R:16389290-16389410 ( 53) GCACACGC 1 chr3R:19344033-19344153 ( 57) GCACACGC 1 chr3L:19897876-19897996 ( 56) GCACACAT 1 chr3L:8925052-8925172 ( 91) GCACACAT 1 chr3L:2853074-2853194 ( 85) GCACACAT 1 chr2L:17263408-17263528 ( 22) GCACACAT 1 chr2L:17564822-17564942 ( 90) GCACACAA 1 chr3L:15785560-15785680 ( 14) GCACACAA 1 chr2R:20602687-20602807 ( 43) ACACACAC 1 chr3L:22456922-22457042 ( 49) ACACACAC 1 chr3R:21640531-21640651 ( 33) ACACACAC 1 chr2L:10548241-10548361 ( 39) GCACACGG 1 chr3L:14962941-14963061 ( 63) GCACACGT 1 chr2L:20995929-20996049 ( 105) ACACACAG 1 chr2L:15470863-15470983 ( 111) GCACACGA 1 chr2R:22408442-22408562 ( 17) ACACACGC 1 chr2L:17743029-17743149 ( 67) ACACACAA 1 chr3R:30474842-30474962 ( 56) GCACGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 3.2e+001 -40 -1164 169 -1164 -1164 199 -1164 -1164 202 -1164 -1164 -1164 -1164 199 -1164 -1164 197 -1164 -301 -1164 -1164 199 -1164 -1164 160 -1164 -1 -1164 -98 108 -42 -68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.2e+001 0.187500 0.000000 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.968750 0.000000 0.031250 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.125000 0.531250 0.187500 0.156250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-4 regular expression -------------------------------------------------------------------------------- GCACAC[AG]C -------------------------------------------------------------------------------- Time 26.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYBYTTT MEME-5 width = 8 sites = 65 llr = 490 E-value = 5.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C ::4252:: probability G :::3:1:: matrix T aa6356aa bits 2.0 ** ** 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 *** * ** (10.9 bits) 0.8 *** **** 0.6 *** **** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel TTTTTTTT consensus CGCC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11344771-11344891 73 1.53e-05 cgtcgttttt tttttttt gtttttgttC chr2R:13188046-13188166 70 1.53e-05 AGGTTTTCTT TTTTTTTT TTAATGGGCG chr3L:14964300-14964420 15 1.53e-05 TCATCTGTTT TTTTTTTT CTGTGAGTTT chrX:19842428-19842548 89 1.53e-05 GTTTCGCCCC TTTTTTTT CGGGGCAACT chr3L:1431347-1431467 63 1.53e-05 TTCGTTATCC TTTTTTTT GAGTGGCTGC chr3R:7106034-7106154 55 3.06e-05 CATCGCTCCT TTTGTTTT CCAGCATTCG chr3L:19897876-19897996 20 3.06e-05 CTCGTTTCTG TTTGTTTT ATGGTTAGAA chrX:2408797-2408917 96 3.06e-05 ATCGCCGTTG TTTGTTTT GGTCGCCTGG chr2R:18670362-18670482 75 3.06e-05 CACGCTTCGC TTTGTTTT CGGTGGATGG chr3L:14625536-14625656 18 4.60e-05 ATAGTGGTAG TTTTCTTT ACCCATTTGC chrX:19842629-19842749 110 4.60e-05 TAAGCATGTT TTTTCTTT TTG chr3R:7088783-7088903 81 4.60e-05 TTTCTTTGCC TTTTCTTT CTCCCAGCGA chr2L:17564822-17564942 29 4.60e-05 GGGTCCACCG TTTTCTTT ACGGCCGCCT chr3R:21644294-21644414 91 4.60e-05 CTCTTGTTGT TTTTCTTT TGAGGCCGGG chr3R:10355090-10355210 41 4.60e-05 cggtcttctg ttttcttt cttcaggctc chr3R:17826272-17826392 105 6.15e-05 TCGCAATTTG TTTGCTTT GGTTGTTG chr3R:22780506-22780626 73 6.15e-05 ATGTTCTGTG TTTGCTTT GCTTGCAGCA chr2R:24335067-24335187 34 6.15e-05 ttccgtCGCT TTTGCTTT TTTTGGGAGA chr3R:26026707-26026827 6 9.23e-05 GTGCC TTCTTTTT CTCCATCACT chr3L:321577-321697 13 9.23e-05 TGGCAGCTGT TTCTTTTT TCTGTTCGTG chr3R:19340785-19340905 39 9.23e-05 TCTGAGATAC TTCTTTTT GCCCAGCAAG chr3R:26025511-26025631 1 9.23e-05 . TTCTTTTT TTATTTGTGG chr2R:20602687-20602807 22 1.38e-04 GCAGCCTGCG TTTCCTTT TTGGCCTGCC chr2L:9193882-9194002 85 1.38e-04 TTGCTTCACT TTCGTTTT CATCGCGTCG chr2R:14433403-14433523 50 1.38e-04 GTTTCGATTT TTCGTTTT TTACCCATTT chr3L:11342774-11342894 62 1.38e-04 CACACACGGT TTTCCTTT CTTTCTTCTA chr3R:14595590-14595710 99 1.38e-04 GGGGTACGTT TTTCCTTT GCTCGCCGCG chr3L:18268219-18268339 2 1.38e-04 A TTTATTTT CCAGCTCGTC chr2L:19037164-19037284 106 1.38e-04 TTTTTGAGTG TTTATTTT TAGTTAC chr2L:6531208-6531328 30 1.54e-04 GATCTGGCCG TTCTCTTT CCCTCTTCCT chr2L:9988771-9988891 44 1.85e-04 CGTTGGCATC TTTACTTT CTACAGATCC chr3L:16019748-16019868 76 1.85e-04 TGCAGAGATT TTCGCTTT GTTGTTTCGC chr2R:21712391-21712511 29 1.85e-04 CTCTTGCCCC TTCGCTTT TCCTGTTTCA chr3R:14597343-14597463 71 2.00e-04 TTCAGACGTT TTTTTCTT CGCTGCTGCT chrX:17509690-17509810 8 2.31e-04 ATAGTTC TTTGTCTT CGGATGCAAA chr3R:9030284-9030404 78 2.31e-04 AACTCCACCT TTTGTCTT GCGTCAGTTG chr2R:25198567-25198687 26 2.31e-04 GCTACTACAC TTTGTCTT CCCCGATTTG chr2R:8245266-8245386 89 2.31e-04 ACAGCTGCTC TTCCTTTT TTACCGAGTC chr3L:21066622-21066742 33 2.47e-04 TGGCAGATGT TTTTCCTT CTCGAAAGCA chr2L:1421578-1421698 65 2.93e-04 CAGGTGTGGA TTCCCTTT CCCCCTCCAC chr2R:21874149-21874269 14 2.93e-04 ATTAGCGATC TTCCCTTT CCATCTCTCT chr3L:6840026-6840146 89 2.93e-04 TAAATTATTA TTTGCCTT TGTGTTGCCT chr2R:11401148-11401268 40 2.93e-04 CTTTTTCCCA TTCCCTTT TGGCCAGCTG chr2R:9694693-9694813 69 2.93e-04 TCGGTCGGGG TTCCCTTT CTGTTCTGTG chr3L:5859155-5859275 1 2.93e-04 . TTCCCTTT TGCACCGAAG chr3R:13817622-13817742 97 3.24e-04 ACAAATTCAA TTCACTTT CTATTCCAAT chr3R:28856361-28856481 68 3.24e-04 TTGTCAGTTG TTCACTTT TGGAGCACTT chr2L:9592821-9592941 94 3.24e-04 GCGTCTCGAT TTCACTTT CGCTACGCCT chr2R:13191977-13192097 35 3.24e-04 TCACAAGGCA TTTCTCTT CAGCACAATT chr2L:15458512-15458632 35 3.24e-04 CGCTGCAATA TTTCTCTT AATGAAAACA chr3R:29266860-29266980 77 3.86e-04 GCGCGGGGTT TTCGTCTT GAAGGAGGCG chr2R:11398073-11398193 43 3.86e-04 CTATCTGCCC TTTATCTT AGGCGCTTCG chr2R:25205016-25205136 82 3.86e-04 GCGCTCGATT TTTATCTT TTAACCTGCT chr2L:16270552-16270672 73 3.86e-04 CAAATGAAGT TTTATCTT TTGAAAACAG chr3R:25636757-25636877 84 3.86e-04 AGCGCGGGTC TTCGTCTT CTGGTTTCTT chrX:392436-392556 41 4.17e-04 TGCTACTGCC TTTTTGTT CAGCGCCCTC chr3L:15847267-15847387 43 4.63e-04 ggcctctacc tttacctt taccGCGTGC chrX:7574076-7574196 29 4.63e-04 CCCCGTTGAG TTTGTGTT TTCCTCCTGA chr2L:17263408-17263528 76 4.63e-04 GGCGCTGTGT TTTGTGTT CCGTCGGTTT chrX:4563054-4563174 44 4.79e-04 CCCCTTTCGG TTTTCGTT TATTTACGAG chr2R:13196261-13196381 54 5.10e-04 ACGGCAGATG TTCCTCTT CGCCAGTCCC chrX:460738-460858 15 5.10e-04 TTCCGttggg tttgcgtt ttagtttgag chr3L:15799186-15799306 92 5.57e-04 AATTCCTTTA TTCCCCTT TCGGGAATCA chr3L:18094912-18095032 52 5.72e-04 ATAATTGCCG TTCTTGTT TGATTTGTGG chr3R:11350978-11351098 105 5.72e-04 GCCCCTGTTG TTCTTGTT TGCGACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11344771-11344891 1.5e-05 72_[+5]_40 chr2R:13188046-13188166 1.5e-05 69_[+5]_43 chr3L:14964300-14964420 1.5e-05 14_[+5]_98 chrX:19842428-19842548 1.5e-05 88_[+5]_24 chr3L:1431347-1431467 1.5e-05 62_[+5]_50 chr3R:7106034-7106154 3.1e-05 54_[+5]_58 chr3L:19897876-19897996 3.1e-05 19_[+5]_93 chrX:2408797-2408917 3.1e-05 95_[+5]_17 chr2R:18670362-18670482 3.1e-05 74_[+5]_38 chr3L:14625536-14625656 4.6e-05 17_[+5]_95 chrX:19842629-19842749 4.6e-05 109_[+5]_3 chr3R:7088783-7088903 4.6e-05 80_[+5]_32 chr2L:17564822-17564942 4.6e-05 28_[+5]_84 chr3R:21644294-21644414 4.6e-05 90_[+5]_22 chr3R:10355090-10355210 4.6e-05 40_[+5]_72 chr3R:17826272-17826392 6.2e-05 104_[+5]_8 chr3R:22780506-22780626 6.2e-05 72_[+5]_40 chr2R:24335067-24335187 6.2e-05 33_[+5]_79 chr3R:26026707-26026827 9.2e-05 5_[+5]_107 chr3L:321577-321697 9.2e-05 12_[+5]_100 chr3R:19340785-19340905 9.2e-05 38_[+5]_74 chr3R:26025511-26025631 9.2e-05 [+5]_112 chr2R:20602687-20602807 0.00014 21_[+5]_91 chr2L:9193882-9194002 0.00014 84_[+5]_28 chr2R:14433403-14433523 0.00014 49_[+5]_63 chr3L:11342774-11342894 0.00014 61_[+5]_51 chr3R:14595590-14595710 0.00014 98_[+5]_14 chr3L:18268219-18268339 0.00014 1_[+5]_111 chr2L:19037164-19037284 0.00014 105_[+5]_7 chr2L:6531208-6531328 0.00015 29_[+5]_83 chr2L:9988771-9988891 0.00018 43_[+5]_69 chr3L:16019748-16019868 0.00018 75_[+5]_37 chr2R:21712391-21712511 0.00018 28_[+5]_84 chr3R:14597343-14597463 0.0002 70_[+5]_42 chrX:17509690-17509810 0.00023 7_[+5]_105 chr3R:9030284-9030404 0.00023 77_[+5]_35 chr2R:25198567-25198687 0.00023 25_[+5]_87 chr2R:8245266-8245386 0.00023 88_[+5]_24 chr3L:21066622-21066742 0.00025 32_[+5]_80 chr2L:1421578-1421698 0.00029 64_[+5]_48 chr2R:21874149-21874269 0.00029 13_[+5]_99 chr3L:6840026-6840146 0.00029 88_[+5]_24 chr2R:11401148-11401268 0.00029 39_[+5]_73 chr2R:9694693-9694813 0.00029 68_[+5]_44 chr3L:5859155-5859275 0.00029 [+5]_112 chr3R:13817622-13817742 0.00032 96_[+5]_16 chr3R:28856361-28856481 0.00032 67_[+5]_45 chr2L:9592821-9592941 0.00032 93_[+5]_19 chr2R:13191977-13192097 0.00032 34_[+5]_78 chr2L:15458512-15458632 0.00032 34_[+5]_78 chr3R:29266860-29266980 0.00039 76_[+5]_36 chr2R:11398073-11398193 0.00039 42_[+5]_70 chr2R:25205016-25205136 0.00039 81_[+5]_31 chr2L:16270552-16270672 0.00039 72_[+5]_40 chr3R:25636757-25636877 0.00039 83_[+5]_29 chrX:392436-392556 0.00042 40_[+5]_72 chr3L:15847267-15847387 0.00046 42_[+5]_70 chrX:7574076-7574196 0.00046 28_[+5]_84 chr2L:17263408-17263528 0.00046 75_[+5]_37 chrX:4563054-4563174 0.00048 43_[+5]_69 chr2R:13196261-13196381 0.00051 53_[+5]_59 chrX:460738-460858 0.00051 14_[+5]_98 chr3L:15799186-15799306 0.00056 91_[+5]_21 chr3L:18094912-18095032 0.00057 51_[+5]_61 chr3R:11350978-11351098 0.00057 104_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYBYTTT width=8 seqs=65 chr3L:11344771-11344891 ( 73) TTTTTTTT 1 chr2R:13188046-13188166 ( 70) TTTTTTTT 1 chr3L:14964300-14964420 ( 15) TTTTTTTT 1 chrX:19842428-19842548 ( 89) TTTTTTTT 1 chr3L:1431347-1431467 ( 63) TTTTTTTT 1 chr3R:7106034-7106154 ( 55) TTTGTTTT 1 chr3L:19897876-19897996 ( 20) TTTGTTTT 1 chrX:2408797-2408917 ( 96) TTTGTTTT 1 chr2R:18670362-18670482 ( 75) TTTGTTTT 1 chr3L:14625536-14625656 ( 18) TTTTCTTT 1 chrX:19842629-19842749 ( 110) TTTTCTTT 1 chr3R:7088783-7088903 ( 81) TTTTCTTT 1 chr2L:17564822-17564942 ( 29) TTTTCTTT 1 chr3R:21644294-21644414 ( 91) TTTTCTTT 1 chr3R:10355090-10355210 ( 41) TTTTCTTT 1 chr3R:17826272-17826392 ( 105) TTTGCTTT 1 chr3R:22780506-22780626 ( 73) TTTGCTTT 1 chr2R:24335067-24335187 ( 34) TTTGCTTT 1 chr3R:26026707-26026827 ( 6) TTCTTTTT 1 chr3L:321577-321697 ( 13) TTCTTTTT 1 chr3R:19340785-19340905 ( 39) TTCTTTTT 1 chr3R:26025511-26025631 ( 1) TTCTTTTT 1 chr2R:20602687-20602807 ( 22) TTTCCTTT 1 chr2L:9193882-9194002 ( 85) TTCGTTTT 1 chr2R:14433403-14433523 ( 50) TTCGTTTT 1 chr3L:11342774-11342894 ( 62) TTTCCTTT 1 chr3R:14595590-14595710 ( 99) TTTCCTTT 1 chr3L:18268219-18268339 ( 2) TTTATTTT 1 chr2L:19037164-19037284 ( 106) TTTATTTT 1 chr2L:6531208-6531328 ( 30) TTCTCTTT 1 chr2L:9988771-9988891 ( 44) TTTACTTT 1 chr3L:16019748-16019868 ( 76) TTCGCTTT 1 chr2R:21712391-21712511 ( 29) TTCGCTTT 1 chr3R:14597343-14597463 ( 71) TTTTTCTT 1 chrX:17509690-17509810 ( 8) TTTGTCTT 1 chr3R:9030284-9030404 ( 78) TTTGTCTT 1 chr2R:25198567-25198687 ( 26) TTTGTCTT 1 chr2R:8245266-8245386 ( 89) TTCCTTTT 1 chr3L:21066622-21066742 ( 33) TTTTCCTT 1 chr2L:1421578-1421698 ( 65) TTCCCTTT 1 chr2R:21874149-21874269 ( 14) TTCCCTTT 1 chr3L:6840026-6840146 ( 89) TTTGCCTT 1 chr2R:11401148-11401268 ( 40) TTCCCTTT 1 chr2R:9694693-9694813 ( 69) TTCCCTTT 1 chr3L:5859155-5859275 ( 1) TTCCCTTT 1 chr3R:13817622-13817742 ( 97) TTCACTTT 1 chr3R:28856361-28856481 ( 68) TTCACTTT 1 chr2L:9592821-9592941 ( 94) TTCACTTT 1 chr2R:13191977-13192097 ( 35) TTTCTCTT 1 chr2L:15458512-15458632 ( 35) TTTCTCTT 1 chr3R:29266860-29266980 ( 77) TTCGTCTT 1 chr2R:11398073-11398193 ( 43) TTTATCTT 1 chr2R:25205016-25205136 ( 82) TTTATCTT 1 chr2L:16270552-16270672 ( 73) TTTATCTT 1 chr3R:25636757-25636877 ( 84) TTCGTCTT 1 chrX:392436-392556 ( 41) TTTTTGTT 1 chr3L:15847267-15847387 ( 43) TTTACCTT 1 chrX:7574076-7574196 ( 29) TTTGTGTT 1 chr2L:17263408-17263528 ( 76) TTTGTGTT 1 chrX:4563054-4563174 ( 44) TTTTCGTT 1 chr2R:13196261-13196381 ( 54) TTCCTCTT 1 chrX:460738-460858 ( 15) TTTGCGTT 1 chr3L:15799186-15799306 ( 92) TTCCCCTT 1 chr3L:18094912-18095032 ( 52) TTCTTGTT 1 chr3R:11350978-11351098 ( 105) TTCTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 5.4e+000 -1267 -1267 -1267 200 -1267 -1267 -1267 200 -1267 55 -1267 134 -68 -33 29 44 -1267 87 -1267 111 -1267 -3 -122 137 -1267 -1267 -1267 200 -1267 -1267 -1267 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 5.4e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.369231 0.000000 0.630769 0.153846 0.200000 0.307692 0.338462 0.000000 0.461538 0.000000 0.538462 0.000000 0.246154 0.107692 0.646154 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYBYTTT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TC][TGC][TC][TC]TT -------------------------------------------------------------------------------- Time 32.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26025511-26025631 4.71e-01 [+5(9.23e-05)]_112 chr3L:5859155-5859275 1.77e-03 78_[+1(3.13e-05)]_34 chrX:4563054-4563174 1.40e-01 120 chr3L:14979407-14979527 4.88e-03 99_[+3(5.80e-05)]_13 chr3R:19344033-19344153 4.87e-03 56_[+4(4.63e-05)]_56 chr2L:15458512-15458632 6.42e-04 46_[+2(1.41e-05)]_66 chr2L:12457853-12457973 9.73e-01 120 chr3R:9024159-9024279 2.42e-01 120 chr3R:8682138-8682258 3.17e-01 120 chr3L:1431347-1431467 1.27e-01 62_[+5(1.53e-05)]_50 chr3R:25629557-25629677 1.14e-01 20_[+1(1.58e-05)]_78_[+1(1.58e-05)]_\ 6 chr2L:15457653-15457773 8.36e-03 7_[+2(8.49e-05)]_39_[+1(9.43e-05)]_\ 58 chr3L:15848135-15848255 8.30e-01 120 chr2R:12776228-12776348 9.77e-01 120 chrX:18209036-18209156 2.33e-01 120 chr2R:14429540-14429660 1.91e-02 54_[+1(3.13e-05)]_58 chr2R:8245266-8245386 4.39e-03 78_[+1(3.13e-05)]_34 chr3L:1360216-1360336 2.88e-01 120 chr2R:8802109-8802229 3.42e-01 120 chr2R:20838478-20838598 4.41e-02 50_[+1(1.58e-05)]_62 chr2L:9989928-9990048 1.29e-02 109_[+2(2.80e-05)]_3 chr3R:10355090-10355210 8.46e-03 3_[+1(3.13e-05)]_29_[+5(4.60e-05)]_\ 72 chrX:457157-457277 5.75e-01 120 chr3L:10335818-10335938 9.87e-01 120 chrX:392436-392556 7.32e-01 120 chr2R:13195020-13195140 6.21e-01 120 chrX:460738-460858 2.87e-03 120 chr3L:297143-297263 8.06e-01 120 chr2R:18666205-18666325 3.78e-01 120 chr3R:11350978-11351098 6.98e-02 120 chr2R:13555786-13555906 2.50e-01 120 chr2L:19037164-19037284 1.47e-01 120 chr3L:13408546-13408666 1.25e-01 120 chrX:369759-369879 1.06e-03 20_[+3(4.37e-05)]_45_[+1(3.13e-05)]_\ 39 chrX:451243-451363 1.50e-01 47_[+1(4.71e-05)]_65 chrX:19842428-19842548 1.31e-05 29_[+1(1.58e-05)]_20_[+3(2.93e-05)]_\ 23_[+5(1.53e-05)]_24 chr3R:25636757-25636877 5.16e-01 120 chr3L:18229435-18229555 1.64e-01 120 chr2R:15866280-15866400 5.38e-01 120 chr3L:13392039-13392159 3.62e-02 24_[+2(1.41e-05)]_88 chr2L:15427027-15427147 3.38e-01 120 chr2R:18670362-18670482 5.96e-03 74_[+5(3.06e-05)]_38 chr2R:25198567-25198687 1.24e-02 77_[+1(3.13e-05)]_35 chrX:2408797-2408917 2.15e-01 95_[+5(3.06e-05)]_17 chr2L:8361285-8361405 2.45e-03 8_[+2(1.41e-05)]_34_[+2(8.49e-05)]_\ 62 chr2R:14431041-14431161 9.13e-02 120 chr3R:30474842-30474962 1.60e-02 120 chr2R:20604195-20604315 3.52e-01 120 chr2L:15470863-15470983 2.68e-01 120 chr3L:11019032-11019152 7.46e-02 120 chr2R:9694693-9694813 6.02e-01 120 chrX:4454098-4454218 5.34e-01 120 chr3R:25596503-25596623 3.65e-02 22_[+1(1.58e-05)]_90 chr2L:15480878-15480998 6.79e-01 120 chr3R:19340785-19340905 3.69e-02 38_[+5(9.23e-05)]_74 chr2R:13195220-13195340 4.58e-02 120 chr3R:25996890-25997010 9.96e-01 120 chr3L:3980136-3980256 7.96e-01 120 chr3L:15669874-15669994 1.17e-01 120 chr3L:18224802-18224922 1.12e-01 120 chr2L:17222266-17222386 2.78e-01 120 chr2R:18672272-18672392 7.21e-03 6_[+1(1.58e-05)]_106 chr2L:20995929-20996049 1.23e-02 7_[+2(8.49e-05)]_105 chr3L:21066622-21066742 3.98e-03 120 chr3L:2868792-2868912 8.00e-03 43_[+4(1.53e-05)]_69 chr2R:11794169-11794289 1.32e-02 15_[+1(1.58e-05)]_97 chr3L:12506191-12506311 2.54e-01 28_[+1(9.43e-05)]_1_[+1(4.71e-05)]_\ 75 chr2L:17263408-17263528 7.18e-03 21_[+4(6.14e-05)]_91 chr2R:21712391-21712511 1.93e-01 120 chrX:19868161-19868281 3.12e-01 120 chr3R:25628756-25628876 2.35e-01 120 chr3L:16743575-16743695 1.74e-01 120 chr3R:9038175-9038295 1.29e-01 47_[+1(3.13e-05)]_65 chr3R:13973438-13973558 8.13e-01 120 chr3L:2853074-2853194 1.39e-02 84_[+4(6.14e-05)]_28 chr3R:23971342-23971462 5.95e-03 60_[+4(1.53e-05)]_52 chr3L:15799186-15799306 3.32e-01 120 chr3L:14975119-14975239 4.49e-01 120 chr2L:9454507-9454627 1.11e-01 120 chr3R:10284258-10284378 1.90e-01 120 chr2L:15327199-15327319 2.71e-01 54_[+2(4.21e-05)]_58 chr3R:9030284-9030404 2.59e-01 120 chr2L:8809174-8809294 7.55e-03 90_[+1(1.58e-05)]_22 chr3L:18269041-18269161 1.48e-01 120 chr3L:321577-321697 7.41e-04 11_[+5(7.69e-05)]_26_[+4(3.06e-05)]_\ 67 chr2R:13196261-13196381 3.62e-01 120 chr2L:6204255-6204375 7.91e-01 120 chr3R:21654269-21654389 1.66e-01 120 chr3R:26029709-26029829 5.00e-01 120 chrX:18622899-18623019 5.12e-02 34_[+1(1.58e-05)]_78 chr3L:18268219-18268339 1.90e-01 120 chr2R:15900842-15900962 4.76e-01 120 chr3R:7105517-7105637 1.52e-02 37_[+4(3.06e-05)]_75 chr3R:21640531-21640651 3.96e-02 32_[+4(9.15e-05)]_80 chrX:451822-451942 2.33e-01 67_[+2(9.93e-05)]_45 chrX:4564191-4564311 3.74e-01 120 chr2L:1518213-1518333 6.40e-02 86_[+1(3.13e-05)]_26 chr2L:15482146-15482266 2.62e-02 32_[+1(9.43e-05)]_80 chr3L:20667516-20667636 2.06e-01 120 chr2R:13191977-13192097 6.06e-03 86_[+1(9.43e-05)]_26 chr2R:7417117-7417237 1.23e-01 120 chr3R:19343374-19343494 3.23e-01 120 chr3R:14595590-14595710 4.98e-01 120 chr2L:5871088-5871208 3.36e-01 120 chr3L:16049212-16049332 3.54e-02 32_[+1(1.58e-05)]_80 chr2L:17221599-17221719 7.72e-01 120 chr3L:19898659-19898779 8.05e-01 120 chrX:7574076-7574196 3.04e-01 120 chr2L:3588005-3588125 4.79e-02 47_[+1(9.43e-05)]_65 chr2R:24335067-24335187 3.20e-05 33_[+5(6.15e-05)]_35_[+3(1.47e-05)]_\ 8_[+4(1.53e-05)]_20 chr3R:10580660-10580780 9.42e-01 120 chr2L:17565817-17565937 2.57e-02 16_[+2(8.49e-05)]_96 chr2L:6531208-6531328 3.16e-01 120 chr2L:10543165-10543285 1.31e-02 26_[+3(2.93e-05)]_86 chr2R:18674807-18674927 2.51e-02 101_[+1(9.43e-05)]_11 chr3L:18094912-18095032 4.74e-01 120 chr3R:26001028-26001148 1.15e-01 120 chr3R:15584716-15584836 7.80e-02 106_[+1(9.43e-05)]_6 chr2R:13042776-13042896 1.21e-01 23_[+2(1.41e-05)]_89 chr3R:16389290-16389410 1.74e-02 52_[+4(4.63e-05)]_60 chr3R:26023418-26023538 9.38e-02 94_[+3(2.93e-05)]_18 chr3L:15785560-15785680 1.67e-03 13_[+4(7.65e-05)]_7_[+2(8.49e-05)]_\ 74_[+2(1.41e-05)]_2 chr3R:26027998-26028118 8.89e-02 120 chr2R:18532367-18532487 6.10e-01 120 chr3R:21644294-21644414 3.29e-02 90_[+5(4.60e-05)]_22 chr3R:31606510-31606630 1.07e-02 77_[+1(1.58e-05)]_35 chr3R:14597343-14597463 1.70e-04 15_[+3(5.80e-05)]_89_[+2(2.80e-05)] chrX:383137-383257 7.54e-03 12_[+4(4.63e-05)]_100 chrX:4562201-4562321 4.12e-01 120 chr2L:15741631-15741751 5.44e-01 120 chr2L:17564822-17564942 1.12e-04 28_[+5(4.60e-05)]_31_[+1(9.43e-05)]_\ 14_[+4(7.65e-05)]_23 chr4:1088754-1088874 2.21e-01 120 chr3R:25633396-25633516 3.31e-01 120 chr2L:1062551-1062671 2.46e-02 110_[+3(1.47e-05)]_2 chr3L:16767051-16767171 4.38e-01 120 chr2R:22408442-22408562 2.48e-05 34_[+3(1.47e-05)]_29_[+1(1.58e-05)]_\ 41 chr3L:11343982-11344102 8.36e-01 120 chr3R:30476497-30476617 3.56e-01 120 chr4:546306-546426 3.52e-01 120 chr3L:22456922-22457042 5.53e-02 34_[+4(9.15e-05)]_4_[+4(9.15e-05)]_\ 66 chr3L:13674813-13674933 8.06e-02 120 chr2L:14265069-14265189 1.33e-02 91_[+3(2.93e-05)]_21 chr3L:5653653-5653773 3.69e-01 120 chr2L:14451311-14451431 1.99e-01 17_[+1(1.58e-05)]_95 chr3L:13135035-13135155 3.70e-02 88_[+3(2.93e-05)]_24 chr2L:5469515-5469635 1.53e-01 120 chr2L:16270552-16270672 1.25e-03 58_[+2(1.41e-05)]_38_[+2(2.80e-05)]_\ 8 chr2R:15353365-15353485 1.84e-01 120 chr3L:8925052-8925172 1.62e-02 90_[+4(6.14e-05)]_22 chr2R:20600792-20600912 1.37e-01 24_[+1(3.13e-05)]_88 chr3L:20789383-20789503 2.12e-01 120 chr3L:15847267-15847387 3.76e-02 80_[+1(4.71e-05)]_32 chr2L:17743029-17743149 1.37e-02 120 chr2L:9988363-9988483 1.16e-01 120 chr2L:10548241-10548361 6.57e-03 62_[+1(1.58e-05)]_50 chr2R:15886735-15886855 4.87e-04 9_[+3(1.47e-05)]_8_[+1(9.43e-05)]_\ 87 chr3R:27597437-27597557 8.73e-01 120 chr2L:21628456-21628576 4.25e-03 38_[+2(2.80e-05)]_74 chrX:4677572-4677692 4.62e-01 120 chr4:702960-703080 2.72e-01 120 chr3R:11354644-11354764 5.82e-03 96_[+2(8.49e-05)]_16 chrX:7096071-7096191 8.13e-04 37_[+1(1.58e-05)]_48_[+2(1.41e-05)]_\ 19 chr3R:7088783-7088903 1.03e-03 69_[+5(4.60e-05)]_3_[+5(4.60e-05)]_\ 32 chr3L:16019748-16019868 4.01e-01 120 chr2L:4375109-4375229 4.08e-02 57_[+1(4.71e-05)]_39_[+1(9.43e-05)]_\ 8 chr3R:16528429-16528549 2.10e-02 36_[+1(9.43e-05)]_76 chr3L:14960642-14960762 2.89e-01 120 chr2L:9592821-9592941 1.33e-01 120 chr3L:19897876-19897996 8.52e-04 19_[+5(3.06e-05)]_28_[+4(6.14e-05)]_\ 57 chr3R:25999493-25999613 4.99e-01 120 chr2L:2438767-2438887 1.45e-01 120 chr2R:9931918-9932038 2.75e-01 120 chr3L:11342774-11342894 1.25e-02 48_[+4(1.53e-05)]_64 chr2R:14433403-14433523 8.50e-05 2_[+2(1.41e-05)]_7_[+2(1.41e-05)]_\ 95 chr3L:14964300-14964420 3.15e-02 11_[+5(1.53e-05)]_101 chr3L:11424483-11424603 1.35e-01 59_[+1(1.58e-05)]_53 chr3L:14962941-14963061 5.33e-03 29_[+2(4.21e-05)]_83 chr4:833119-833239 4.80e-02 100_[+2(8.49e-05)]_12 chr2R:25205016-25205136 9.02e-02 120 chr3R:10602445-10602565 9.97e-01 120 chr2R:7486399-7486519 7.50e-01 120 chr3R:22780506-22780626 1.96e-02 72_[+5(6.15e-05)]_40 chr2R:11398073-11398193 3.48e-02 120 chr3R:26026707-26026827 4.93e-02 5_[+5(9.23e-05)]_107 chr2R:11401148-11401268 1.04e-01 120 chr2L:15485700-15485820 1.77e-01 120 chr2L:6229441-6229561 3.51e-01 120 chr3L:6840026-6840146 1.93e-03 44_[+3(1.47e-05)]_13_[+3(8.72e-05)]_\ 47 chr3R:19345249-19345369 6.42e-01 120 chr3R:28856361-28856481 3.31e-01 120 chr2R:17476183-17476303 2.14e-03 19_[+2(2.80e-05)]_93 chr2L:9988771-9988891 3.83e-02 107_[+1(9.43e-05)]_5 chr2R:13188046-13188166 1.66e-06 13_[+2(1.41e-05)]_21_[+1(3.13e-05)]_\ 17_[+5(1.53e-05)]_45 chr3L:3349102-3349222 2.55e-01 120 chr2L:2461538-2461658 3.58e-01 120 chr2R:12730003-12730123 7.33e-02 120 chr2R:13623512-13623632 9.85e-01 120 chrX:19889048-19889168 2.66e-05 28_[+4(1.53e-05)]_31_[+1(9.43e-05)]_\ 15_[+2(8.49e-05)]_22 chr2R:21874149-21874269 2.22e-01 120 chr2L:5866906-5867026 1.02e-02 33_[+4(1.53e-05)]_[+4(9.15e-05)]_71 chr2R:14001919-14002039 7.60e-01 120 chrX:693510-693630 1.06e-02 52_[+4(1.53e-05)]_60 chr2L:19339173-19339293 8.29e-03 79_[+3(2.93e-05)]_33 chr3L:16475775-16475895 6.75e-01 120 chr2R:18675720-18675840 2.04e-02 120 chr2R:19258232-19258352 1.26e-02 46_[+1(4.71e-05)]_66 chr3R:26001574-26001694 4.09e-01 120 chr3R:13971888-13972008 5.92e-01 120 chr2L:1421578-1421698 4.34e-02 120 chr2L:4363765-4363885 7.36e-01 120 chr3L:10966788-10966908 3.38e-01 17_[+1(9.43e-05)]_95 chrX:3832374-3832494 2.49e-03 35_[+4(4.63e-05)]_18_[+2(8.49e-05)]_\ 12_[+2(8.49e-05)]_18_[+2(8.49e-05)]_5 chrX:19842629-19842749 1.32e-05 10_[+3(4.37e-05)]_36_[+2(2.80e-05)]_\ 2_[+2(2.80e-05)]_37_[+5(4.60e-05)]_3 chr3R:26009892-26010012 1.13e-01 120 chrX:17743627-17743747 6.02e-01 120 chr3R:17826272-17826392 1.48e-01 104_[+5(6.15e-05)]_8 chr3L:20976564-20976684 7.03e-01 120 chr2R:12777306-12777426 4.76e-01 120 chr3R:19934973-19935093 2.09e-01 120 chr2R:15132456-15132576 9.36e-02 10_[+1(1.58e-05)]_102 chrX:2987338-2987458 1.81e-01 87_[+1(4.71e-05)]_25 chr2L:14431545-14431665 7.26e-01 120 chr3R:7106034-7106154 1.25e-02 54_[+5(3.06e-05)]_35_[+1(4.71e-05)]_\ 15 chr3R:8277868-8277988 2.94e-01 120 chr3L:14967824-14967944 4.94e-02 24_[+2(9.93e-05)]_88 chrX:8413083-8413203 6.61e-02 120 chr2L:8266867-8266987 2.27e-01 120 chr2R:19469019-19469139 3.87e-03 41_[+1(6.29e-05)]_54_[+3(1.47e-05)]_\ 9 chrX:17509690-17509810 1.50e-02 101_[+1(6.29e-05)]_11 chr2L:19937905-19938025 3.37e-02 102_[+4(3.06e-05)]_10 chr3R:13817622-13817742 1.80e-03 83_[+2(1.41e-05)]_29 chr3R:29547553-29547673 3.28e-01 120 chr3R:9027180-9027300 5.43e-01 120 chr2R:8657856-8657976 9.78e-01 120 chr2R:21523703-21523823 4.63e-01 120 chr3L:13074227-13074347 1.79e-01 120 chr2L:4370138-4370258 6.37e-03 25_[+1(1.58e-05)]_87 chr3R:29266860-29266980 1.02e-01 120 chr2L:9193882-9194002 1.04e-01 120 chr3R:16552425-16552545 3.51e-01 120 chr3L:11344771-11344891 1.87e-03 36_[+2(4.21e-05)]_23_[+5(1.53e-05)]_\ 2_[+5(3.06e-05)]_35 chrX:9644949-9645069 9.67e-01 120 chr2R:20602687-20602807 5.85e-05 42_[+4(9.15e-05)]_1_[+3(1.47e-05)]_\ 61 chr3L:18225509-18225629 4.78e-01 120 chr2R:24882656-24882776 9.27e-02 1_[+1(1.58e-05)]_111 chr3L:14625536-14625656 4.84e-02 17_[+5(4.60e-05)]_95 chr3R:4947920-4948040 1.24e-02 120 chr3R:26040017-26040137 1.60e-03 92_[+3(1.47e-05)]_20 chr3R:25999706-25999826 8.63e-02 54_[+4(1.53e-05)]_58 chr3R:31701962-31702082 1.26e-02 41_[+4(3.06e-05)]_71 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n06.farnam.hpc.yale.internal ********************************************************************************