******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm3-HLH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:20906658-20906778 1.0000 120 chrX:17820352-17820472 1.0000 120 chr2R:22661299-22661419 1.0000 120 chr2L:5771293-5771413 1.0000 120 chrX:16105849-16105969 1.0000 120 chr2L:20463487-20463607 1.0000 120 chr2L:5743664-5743784 1.0000 120 chrX:15653667-15653787 1.0000 120 chr2L:14161004-14161124 1.0000 120 chrX:18517547-18517667 1.0000 120 chr2R:15818622-15818742 1.0000 120 chr4:406945-407065 1.0000 120 chr3L:11484644-11484764 1.0000 120 chr3L:13411166-13411286 1.0000 120 chr2R:16551916-16552036 1.0000 120 chrX:7162650-7162770 1.0000 120 chrX:15594646-15594766 1.0000 120 chr3R:22108428-22108548 1.0000 120 chr3R:16573972-16574092 1.0000 120 chr3R:17231687-17231807 1.0000 120 chr3L:8029499-8029619 1.0000 120 chr2L:4292749-4292869 1.0000 120 chr2L:1362365-1362485 1.0000 120 chr3R:8923026-8923146 1.0000 120 chr3L:9614101-9614221 1.0000 120 chr2L:4861647-4861767 1.0000 120 chr3R:16748689-16748809 1.0000 120 chr2R:11628131-11628251 1.0000 120 chr2R:21514464-21514584 1.0000 120 chrX:7710924-7711044 1.0000 120 chr2L:10986280-10986400 1.0000 120 chr2L:1916552-1916672 1.0000 120 chr2L:4133218-4133338 1.0000 120 chr3R:19875715-19875835 1.0000 120 chr2L:16816076-16816196 1.0000 120 chr2L:19059056-19059176 1.0000 120 chrX:14953995-14954115 1.0000 120 chr2L:3472392-3472512 1.0000 120 chr3L:3288570-3288690 1.0000 120 chr3R:21419993-21420113 1.0000 120 chr2R:25085537-25085657 1.0000 120 chr2R:21535566-21535686 1.0000 120 chr2R:11176246-11176366 1.0000 120 chr2R:10160329-10160449 1.0000 120 chr3L:11285287-11285407 1.0000 120 chr3L:10899356-10899476 1.0000 120 chrX:12241189-12241309 1.0000 120 chr2R:20994777-20994897 1.0000 120 chr3L:16544351-16544471 1.0000 120 chr3R:28851978-28852098 1.0000 120 chrX:13789106-13789226 1.0000 120 chr3L:20771144-20771264 1.0000 120 chr3L:8445111-8445231 1.0000 120 chr3L:3814660-3814780 1.0000 120 chr3L:12037938-12038058 1.0000 120 chr3R:14077177-14077297 1.0000 120 chr3R:23067475-23067595 1.0000 120 chr2L:14024794-14024914 1.0000 120 chr2L:9576800-9576920 1.0000 120 chr3L:8749000-8749120 1.0000 120 chr2L:7149059-7149179 1.0000 120 chr3L:22277392-22277512 1.0000 120 chr3R:26235195-26235315 1.0000 120 chr2L:18666031-18666151 1.0000 120 chr3R:20008795-20008915 1.0000 120 chr2L:6357082-6357202 1.0000 120 chr2L:18900022-18900142 1.0000 120 chr3R:17617276-17617396 1.0000 120 chr2L:19930232-19930352 1.0000 120 chr3R:18215461-18215581 1.0000 120 chr2L:18505679-18505799 1.0000 120 chr2R:12274350-12274470 1.0000 120 chr2R:16849572-16849692 1.0000 120 chr3L:20276708-20276828 1.0000 120 chr2R:18451087-18451207 1.0000 120 chr3L:6969344-6969464 1.0000 120 chr3R:20948126-20948246 1.0000 120 chr3R:11872851-11872971 1.0000 120 chr3R:29089774-29089894 1.0000 120 chrX:18635417-18635537 1.0000 120 chr2R:9109758-9109878 1.0000 120 chr2R:16800198-16800318 1.0000 120 chr2L:7957089-7957209 1.0000 120 chr3L:11334146-11334266 1.0000 120 chr2L:7532742-7532862 1.0000 120 chr3R:21887606-21887726 1.0000 120 chr2L:8610992-8611112 1.0000 120 chr3R:15652691-15652811 1.0000 120 chr3L:630203-630323 1.0000 120 chr3R:26006012-26006132 1.0000 120 chr3R:10636167-10636287 1.0000 120 chrX:10600635-10600755 1.0000 120 chr2L:7492039-7492159 1.0000 120 chr3L:14622520-14622640 1.0000 120 chr2L:8982730-8982850 1.0000 120 chr2L:3587456-3587576 1.0000 120 chr2L:16544686-16544806 1.0000 120 chr3L:13450277-13450397 1.0000 120 chr3L:12526949-12527069 1.0000 120 chr3R:29690623-29690743 1.0000 120 chr3L:12668121-12668241 1.0000 120 chr3R:10628408-10628528 1.0000 120 chr3R:10203712-10203832 1.0000 120 chr2R:17533756-17533876 1.0000 120 chr2L:21149252-21149372 1.0000 120 chr2L:19490290-19490410 1.0000 120 chrX:2396647-2396767 1.0000 120 chrX:6615595-6615715 1.0000 120 chrX:5639263-5639383 1.0000 120 chrX:8125240-8125360 1.0000 120 chr3R:5636886-5637006 1.0000 120 chr3R:21612949-21613069 1.0000 120 chr2L:9224576-9224696 1.0000 120 chr2L:19377574-19377694 1.0000 120 chr3R:26014319-26014439 1.0000 120 chr2R:8914035-8914155 1.0000 120 chr3L:4607811-4607931 1.0000 120 chr2L:7258233-7258353 1.0000 120 chrX:18921080-18921200 1.0000 120 chr3R:10161304-10161424 1.0000 120 chr3L:14335976-14336096 1.0000 120 chr3R:10648970-10649090 1.0000 120 chrX:17751846-17751966 1.0000 120 chr3L:18402827-18402947 1.0000 120 chr3L:11074571-11074691 1.0000 120 chr3R:26105993-26106113 1.0000 120 chr3L:15691311-15691431 1.0000 120 chr3L:5554538-5554658 1.0000 120 chr3L:6264593-6264713 1.0000 120 chr3R:5686504-5686624 1.0000 120 chr3R:22121374-22121494 1.0000 120 chr3R:13999680-13999800 1.0000 120 chr3L:745650-745770 1.0000 120 chr3R:16718085-16718205 1.0000 120 chr3R:26117754-26117874 1.0000 120 chr3R:16834772-16834892 1.0000 120 chr2L:3444931-3445051 1.0000 120 chr3L:14999688-14999808 1.0000 120 chr2R:23574941-23575061 1.0000 120 chr3R:20588567-20588687 1.0000 120 chr3L:5988858-5988978 1.0000 120 chr3R:19627999-19628119 1.0000 120 chr2R:18514031-18514151 1.0000 120 chr3L:2159063-2159183 1.0000 120 chr3R:19164992-19165112 1.0000 120 chr3R:26444292-26444412 1.0000 120 chr2L:13073888-13074008 1.0000 120 chr3R:22625790-22625910 1.0000 120 chr3L:5789850-5789970 1.0000 120 chr2L:21163448-21163568 1.0000 120 chr3R:28677013-28677133 1.0000 120 chrX:17531921-17532041 1.0000 120 chrX:4010961-4011081 1.0000 120 chr2L:7270424-7270544 1.0000 120 chr3R:18242153-18242273 1.0000 120 chr3R:6818714-6818834 1.0000 120 chr2L:19517452-19517572 1.0000 120 chr3R:8563935-8564055 1.0000 120 chrX:13128042-13128162 1.0000 120 chr3R:17400793-17400913 1.0000 120 chr2R:21018395-21018515 1.0000 120 chr3L:16385965-16386085 1.0000 120 chr2R:23868649-23868769 1.0000 120 chrX:3367380-3367500 1.0000 120 chr3R:29859942-29860062 1.0000 120 chr2R:21503229-21503349 1.0000 120 chr2R:9286605-9286725 1.0000 120 chr2L:602451-602571 1.0000 120 chr2R:9935967-9936087 1.0000 120 chr2R:11809418-11809538 1.0000 120 chr3L:17242247-17242367 1.0000 120 chr3R:29738054-29738174 1.0000 120 chr3L:13189413-13189533 1.0000 120 chr2L:10698138-10698258 1.0000 120 chrX:12242543-12242663 1.0000 120 chr3L:16710369-16710489 1.0000 120 chr3R:26172161-26172281 1.0000 120 chrX:9349350-9349470 1.0000 120 chr3R:24010964-24011084 1.0000 120 chr3L:1376141-1376261 1.0000 120 chr2R:23940156-23940276 1.0000 120 chr2L:10468539-10468659 1.0000 120 chr2L:8602721-8602841 1.0000 120 chr3R:8960426-8960546 1.0000 120 chr3R:23028654-23028774 1.0000 120 chr2R:23176723-23176843 1.0000 120 chr2R:21017433-21017553 1.0000 120 chr2R:18850629-18850749 1.0000 120 chr2L:12424696-12424816 1.0000 120 chr3L:7356484-7356604 1.0000 120 chr2L:10856580-10856700 1.0000 120 chr2R:23652358-23652478 1.0000 120 chr3R:30413918-30414038 1.0000 120 chrX:19667060-19667180 1.0000 120 chr3L:10206303-10206423 1.0000 120 chr2R:18528514-18528634 1.0000 120 chr2L:4847316-4847436 1.0000 120 chr2L:522868-522988 1.0000 120 chr3L:2152105-2152225 1.0000 120 chr3L:13197644-13197764 1.0000 120 chr2R:11095285-11095405 1.0000 120 chr3R:25004887-25005007 1.0000 120 chr2L:18921402-18921522 1.0000 120 chr3L:12336392-12336512 1.0000 120 chr2L:12721079-12721199 1.0000 120 chr3R:5613199-5613319 1.0000 120 chr3R:9605213-9605333 1.0000 120 chr2L:20881497-20881617 1.0000 120 chr2L:3566668-3566788 1.0000 120 chr3L:15311572-15311692 1.0000 120 chr3R:8984649-8984769 1.0000 120 chr2L:17243514-17243634 1.0000 120 chr2L:15248754-15248874 1.0000 120 chr3L:16779705-16779825 1.0000 120 chr3R:16919172-16919292 1.0000 120 chr2R:12468354-12468474 1.0000 120 chr3L:18114496-18114616 1.0000 120 chr3R:28631974-28632094 1.0000 120 chrX:13644198-13644318 1.0000 120 chr3R:23174875-23174995 1.0000 120 chr2R:12605711-12605831 1.0000 120 chr3R:31064770-31064890 1.0000 120 chr2L:9598566-9598686 1.0000 120 chr2R:15477998-15478118 1.0000 120 chr3L:613731-613851 1.0000 120 chr3R:30532064-30532184 1.0000 120 chr2R:14434337-14434457 1.0000 120 chr2L:14094772-14094892 1.0000 120 chr2R:13429209-13429329 1.0000 120 chr2R:13055041-13055161 1.0000 120 chr2L:4856264-4856384 1.0000 120 chr2L:6797579-6797699 1.0000 120 chr2L:5543150-5543270 1.0000 120 chr3L:18784680-18784800 1.0000 120 chrX:11629098-11629218 1.0000 120 chr3L:2372029-2372149 1.0000 120 chr2L:6323574-6323694 1.0000 120 chr2R:20153977-20154097 1.0000 120 chrX:1052834-1052954 1.0000 120 chr2R:23554572-23554692 1.0000 120 chr2L:19159319-19159439 1.0000 120 chr2L:10442061-10442181 1.0000 120 chr2L:6830535-6830655 1.0000 120 chr2R:12652588-12652708 1.0000 120 chr2R:7490391-7490511 1.0000 120 chr3R:16469742-16469862 1.0000 120 chr2L:1150656-1150776 1.0000 120 chr3L:4282772-4282892 1.0000 120 chr2L:7632926-7633046 1.0000 120 chr4:404476-404596 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Esplm3-HLH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm3-HLH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.33 C 0.171 G 0.172 T 0.327 Background letter frequencies (from file dataset with add-one prior applied): A 0.33 C 0.171 G 0.172 T 0.327 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-1 width = 8 sites = 38 llr = 404 E-value = 3.6e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::1:9:: pos.-specific C 1a:9a159 probability G 8:a::::: matrix T ::::::51 bits 2.5 ** * 2.3 ** * 2.0 **** 1.8 ***** * Relative 1.5 ***** * Entropy 1.3 ****** * (15.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16919172-16919292 53 1.43e-06 CCGCCTTGCA GCGCCACC TGGCCTTGGT chr2R:23652358-23652478 68 1.43e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr2L:12424696-12424816 51 1.43e-06 GCTGATACTA GCGCCACC TGGCAGCAGT chrX:17531921-17532041 102 1.43e-06 GTTTATGATG GCGCCACC TATAGTGTTC chr2R:16800198-16800318 22 1.43e-06 AACTGAACTA GCGCCACC TGAGACTGCA chr3R:20948126-20948246 56 1.43e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr2R:12274350-12274470 86 1.43e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC chr2L:3472392-3472512 76 1.43e-06 TGTGCAGATG GCGCCACC ATGACGCGCG chr2L:16816076-16816196 60 1.43e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr2R:16551916-16552036 89 1.43e-06 ATACAAAAGA GCGCCACC TAGAAAATAT chr2R:15818622-15818742 72 1.43e-06 CACAAATGCA GCGCCACC TATGCGGGCA chrX:17820352-17820472 17 1.43e-06 GTGTGCACTG GCGCCACC TAGGTATGCT chr2L:602451-602571 20 4.16e-06 TAACATGGTG GCGCCATC TGTTGTTCCC chr3R:16834772-16834892 96 4.16e-06 GAGCACATTG GCGCCATC TGTATTCCGT chr3L:6264593-6264713 12 4.16e-06 AGATTTACTG GCGCCATC TAGGGCCTTA chr2L:7258233-7258353 80 4.16e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chr2R:25085537-25085657 36 4.16e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chr3L:3288570-3288690 17 4.16e-06 TTATTTTGTG GCGCCATC TACATAACAG chr2L:1362365-1362485 67 4.16e-06 ACTTCTGCCA GCGCCATC TGTTGAGCGC chrX:16105849-16105969 15 4.16e-06 AATATGTGAA GCGCCATC CAGCGGATAG chr3L:10899356-10899476 26 6.31e-06 TGTTGTAGTG GCGCCCTC TTTTGTTTTT chrX:18517547-18517667 70 6.31e-06 GTTCCAGACG GCGCCCTC TGGCGGCGGA chr2L:5771293-5771413 52 6.31e-06 TTCTACAGCA GCGCCCTC TCACAGATTT chr3R:15652691-15652811 2 1.05e-05 T ACGCCACC CTCTGATACA chrX:7162650-7162770 42 1.05e-05 TGACCACCAA ACGCCACC TGTTGGCCGG chrX:15653667-15653787 31 1.32e-05 AACGGCAAGA GCGACACC TATCGTCAGT chr2L:6323574-6323694 86 1.60e-05 AACAGAAGTG GCGCCACT AGCGTATTAA chr3L:9614101-9614221 77 1.60e-05 CACTTTTGGG GCGCCACT AAGGTAAAAT chr3R:16573972-16574092 68 1.60e-05 GCACCAGGTG GCGCCACT TCCGCGCGCG chr3R:20588567-20588687 97 2.39e-05 TTAACTGTTT CCGCCATC TGGCATCTCT chr3R:17617276-17617396 57 2.39e-05 TTACATTTTT ACGCCATC TAACGAAAAT chr2R:20994777-20994897 81 2.39e-05 AAACACCCTA ACGCCATC TAGTTTGCAG chr3R:16748689-16748809 64 2.39e-05 CAACTCAGTG CCGCCATC TGACGTAAGA chr2R:14434337-14434457 18 2.92e-05 TGTCACACCA GCGACATC TATGGAGTCA chr3L:13411166-13411286 38 2.92e-05 AACGTTTGCA GCGACATC TAGTGGTGGT chr2R:20906658-20906778 25 2.92e-05 ACACATTGCA GCGACATC TATCGTCAAA chr2L:14161004-14161124 39 3.19e-05 CACAGAGATG GCGCCAAC ACTTAACTAA chr2L:4847316-4847436 9 3.99e-05 TTAGAGAT GCGCCACA GCTATCCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16919172-16919292 1.4e-06 52_[+1]_60 chr2R:23652358-23652478 1.4e-06 67_[+1]_45 chr2L:12424696-12424816 1.4e-06 50_[+1]_62 chrX:17531921-17532041 1.4e-06 101_[+1]_11 chr2R:16800198-16800318 1.4e-06 21_[+1]_91 chr3R:20948126-20948246 1.4e-06 55_[+1]_57 chr2R:12274350-12274470 1.4e-06 85_[+1]_27 chr2L:3472392-3472512 1.4e-06 75_[+1]_37 chr2L:16816076-16816196 1.4e-06 59_[+1]_53 chr2R:16551916-16552036 1.4e-06 88_[+1]_24 chr2R:15818622-15818742 1.4e-06 71_[+1]_41 chrX:17820352-17820472 1.4e-06 16_[+1]_96 chr2L:602451-602571 4.2e-06 19_[+1]_93 chr3R:16834772-16834892 4.2e-06 95_[+1]_17 chr3L:6264593-6264713 4.2e-06 11_[+1]_101 chr2L:7258233-7258353 4.2e-06 79_[+1]_33 chr2R:25085537-25085657 4.2e-06 35_[+1]_77 chr3L:3288570-3288690 4.2e-06 16_[+1]_96 chr2L:1362365-1362485 4.2e-06 66_[+1]_46 chrX:16105849-16105969 4.2e-06 14_[+1]_98 chr3L:10899356-10899476 6.3e-06 25_[+1]_87 chrX:18517547-18517667 6.3e-06 69_[+1]_43 chr2L:5771293-5771413 6.3e-06 51_[+1]_61 chr3R:15652691-15652811 1e-05 1_[+1]_111 chrX:7162650-7162770 1e-05 41_[+1]_71 chrX:15653667-15653787 1.3e-05 30_[+1]_82 chr2L:6323574-6323694 1.6e-05 85_[+1]_27 chr3L:9614101-9614221 1.6e-05 76_[+1]_36 chr3R:16573972-16574092 1.6e-05 67_[+1]_45 chr3R:20588567-20588687 2.4e-05 96_[+1]_16 chr3R:17617276-17617396 2.4e-05 56_[+1]_56 chr2R:20994777-20994897 2.4e-05 80_[+1]_32 chr3R:16748689-16748809 2.4e-05 63_[+1]_49 chr2R:14434337-14434457 2.9e-05 17_[+1]_95 chr3L:13411166-13411286 2.9e-05 37_[+1]_75 chr2R:20906658-20906778 2.9e-05 24_[+1]_88 chr2L:14161004-14161124 3.2e-05 38_[+1]_74 chr2L:4847316-4847436 4e-05 8_[+1]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=38 chr3R:16919172-16919292 ( 53) GCGCCACC 1 chr2R:23652358-23652478 ( 68) GCGCCACC 1 chr2L:12424696-12424816 ( 51) GCGCCACC 1 chrX:17531921-17532041 ( 102) GCGCCACC 1 chr2R:16800198-16800318 ( 22) GCGCCACC 1 chr3R:20948126-20948246 ( 56) GCGCCACC 1 chr2R:12274350-12274470 ( 86) GCGCCACC 1 chr2L:3472392-3472512 ( 76) GCGCCACC 1 chr2L:16816076-16816196 ( 60) GCGCCACC 1 chr2R:16551916-16552036 ( 89) GCGCCACC 1 chr2R:15818622-15818742 ( 72) GCGCCACC 1 chrX:17820352-17820472 ( 17) GCGCCACC 1 chr2L:602451-602571 ( 20) GCGCCATC 1 chr3R:16834772-16834892 ( 96) GCGCCATC 1 chr3L:6264593-6264713 ( 12) GCGCCATC 1 chr2L:7258233-7258353 ( 80) GCGCCATC 1 chr2R:25085537-25085657 ( 36) GCGCCATC 1 chr3L:3288570-3288690 ( 17) GCGCCATC 1 chr2L:1362365-1362485 ( 67) GCGCCATC 1 chrX:16105849-16105969 ( 15) GCGCCATC 1 chr3L:10899356-10899476 ( 26) GCGCCCTC 1 chrX:18517547-18517667 ( 70) GCGCCCTC 1 chr2L:5771293-5771413 ( 52) GCGCCCTC 1 chr3R:15652691-15652811 ( 2) ACGCCACC 1 chrX:7162650-7162770 ( 42) ACGCCACC 1 chrX:15653667-15653787 ( 31) GCGACACC 1 chr2L:6323574-6323694 ( 86) GCGCCACT 1 chr3L:9614101-9614221 ( 77) GCGCCACT 1 chr3R:16573972-16574092 ( 68) GCGCCACT 1 chr3R:20588567-20588687 ( 97) CCGCCATC 1 chr3R:17617276-17617396 ( 57) ACGCCATC 1 chr2R:20994777-20994897 ( 81) ACGCCATC 1 chr3R:16748689-16748809 ( 64) CCGCCATC 1 chr2R:14434337-14434457 ( 18) GCGACATC 1 chr3L:13411166-13411286 ( 38) GCGACATC 1 chr2R:20906658-20906778 ( 25) GCGACATC 1 chr2L:14161004-14161124 ( 39) GCGCCAAC 1 chr2L:4847316-4847436 ( 9) GCGCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 3.6e-037 -165 -170 229 -1189 -1189 255 -1189 -1189 -1189 -1189 254 -1189 -165 239 -1189 -1189 -1189 255 -1189 -1189 148 -111 -1189 -1189 -364 155 -1189 54 -364 239 -1189 -205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 3.6e-037 0.105263 0.052632 0.842105 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.105263 0.894737 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.921053 0.078947 0.000000 0.000000 0.026316 0.500000 0.000000 0.473684 0.026316 0.894737 0.000000 0.078947 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 regular expression -------------------------------------------------------------------------------- GCGCCA[CT]C -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTGGCGC MEME-2 width = 8 sites = 35 llr = 364 E-value = 2.4e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 15:::::1 pos.-specific C :1:::a:9 probability G 852a9:a: matrix T ::8:1::: bits 2.5 ** 2.3 * ** 2.0 ***** 1.8 ***** Relative 1.5 * ***** Entropy 1.3 * ***** (15.0 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GATGGCGC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14434337-14434457 78 1.44e-06 AATTACTGTA GGTGGCGC CTAACATTCA chr2R:16800198-16800318 93 1.44e-06 ATTTCGTATA GGTGGCGC CACTTAAACT chrX:18635417-18635537 78 1.44e-06 TTCTCTCCTA GGTGGCGC TTTATTACTA chr3L:8749000-8749120 25 1.44e-06 CTCACACATA GGTGGCGC ATTCTGCACA chr2L:9576800-9576920 76 1.44e-06 TTTTTAACTA GGTGGCGC AGGAGATCAT chr2R:21535566-21535686 37 1.44e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chrX:14953995-14954115 92 1.44e-06 ACAACATCCA GGTGGCGC TGTTTTTGTT chr3L:18114496-18114616 98 4.20e-06 CAGGTCACCC GATGGCGC TCTCGAATCA chr3R:10203712-10203832 61 4.20e-06 CCTGACAACA GATGGCGC TTTGTATCAT chr3L:12526949-12527069 69 4.20e-06 CTGACCGCCA GATGGCGC GTTTCAATTC chr2R:12274350-12274470 57 4.20e-06 ATTGCCGAAA GATGGCGC CCATGGCGCA chr3L:3288570-3288690 70 4.20e-06 AAGCTGTGTA GATGGCGC TGCTGAGTTC chr2L:3472392-3472512 24 4.20e-06 TTCAGATACA GATGGCGC TCACGCCAAT chrX:7710924-7711044 89 4.20e-06 TTAATCCATA GATGGCGC CAGATGTTTC chr3R:16748689-16748809 43 4.20e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2R:20906658-20906778 96 4.20e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chr3L:7356484-7356604 35 6.41e-06 GGATCCCGAA GAGGGCGC TTATCGATTT chrX:17751846-17751966 81 6.41e-06 TTCAAGAGTA GAGGGCGC CGCTTACTTT chr3L:10899356-10899476 83 6.41e-06 ATAGCCGCTG GAGGGCGC TCATGTATAT chr4:406945-407065 90 6.41e-06 ATTTCCCACA GAGGGCGC CTGTAGTGGT chr2R:23652358-23652478 25 7.84e-06 AATTCAGAGT GCTGGCGC CATCCAGCTT chrX:15594646-15594766 43 7.84e-06 TACCCGCCTA GCTGGCGC TTTTGTGCTA chrX:17531921-17532041 31 1.06e-05 GTGTGCGGCG AGTGGCGC CATCAATTGG chr3R:19875715-19875835 14 1.06e-05 CCAGATGTAC AGTGGCGC GCAAAAGTAT chrX:18517547-18517667 26 1.06e-05 ATTGGCCGCC AGTGGCGC TGTAGTGCTG chr2L:6797579-6797699 82 2.22e-05 TACGCCGCTA GGTGTCGC TTAGTTAAAA chrX:15653667-15653787 88 2.22e-05 AACAGCCACA GGTGTCGC TACTGAGCAA chr3L:6264593-6264713 65 2.36e-05 AAATGCCGCT AGGGGCGC TAAAAAGCAA chr2R:11628131-11628251 95 2.36e-05 AACCGCCGCC AGGGGCGC TGCTGCACAC chr3R:16919172-16919292 104 3.42e-05 ACCAACACAA GATGTCGC TCTCCGACA chr3R:13999680-13999800 1 3.42e-05 . GATGGCGA TATGAAGTAC chrX:7162650-7162770 84 3.42e-05 TTGGCCCATA GATGGCGA CAGTATGCTT chr2L:1362365-1362485 38 4.26e-05 GGATTCCGTT TGTGGCGC CATCTCTTCG chr2L:1150656-1150776 45 4.54e-05 TTTGCAGTAG GGTAGCGC AATAAACTTA chr2L:18921402-18921522 110 5.10e-05 ACTCTTATTT GAGGGCGA AAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14434337-14434457 1.4e-06 77_[+2]_35 chr2R:16800198-16800318 1.4e-06 92_[+2]_20 chrX:18635417-18635537 1.4e-06 77_[+2]_35 chr3L:8749000-8749120 1.4e-06 24_[+2]_88 chr2L:9576800-9576920 1.4e-06 75_[+2]_37 chr2R:21535566-21535686 1.4e-06 36_[+2]_76 chrX:14953995-14954115 1.4e-06 91_[+2]_21 chr3L:18114496-18114616 4.2e-06 97_[+2]_15 chr3R:10203712-10203832 4.2e-06 60_[+2]_52 chr3L:12526949-12527069 4.2e-06 68_[+2]_44 chr2R:12274350-12274470 4.2e-06 56_[+2]_56 chr3L:3288570-3288690 4.2e-06 69_[+2]_43 chr2L:3472392-3472512 4.2e-06 23_[+2]_89 chrX:7710924-7711044 4.2e-06 88_[+2]_24 chr3R:16748689-16748809 4.2e-06 42_[+2]_70 chr2R:20906658-20906778 4.2e-06 95_[+2]_17 chr3L:7356484-7356604 6.4e-06 34_[+2]_78 chrX:17751846-17751966 6.4e-06 80_[+2]_32 chr3L:10899356-10899476 6.4e-06 82_[+2]_30 chr4:406945-407065 6.4e-06 89_[+2]_23 chr2R:23652358-23652478 7.8e-06 24_[+2]_88 chrX:15594646-15594766 7.8e-06 42_[+2]_70 chrX:17531921-17532041 1.1e-05 30_[+2]_82 chr3R:19875715-19875835 1.1e-05 13_[+2]_99 chrX:18517547-18517667 1.1e-05 25_[+2]_87 chr2L:6797579-6797699 2.2e-05 81_[+2]_31 chrX:15653667-15653787 2.2e-05 87_[+2]_25 chr3L:6264593-6264713 2.4e-05 64_[+2]_48 chr2R:11628131-11628251 2.4e-05 94_[+2]_18 chr3R:16919172-16919292 3.4e-05 103_[+2]_9 chr3R:13999680-13999800 3.4e-05 [+2]_112 chrX:7162650-7162770 3.4e-05 83_[+2]_29 chr2L:1362365-1362485 4.3e-05 37_[+2]_75 chr2L:1150656-1150776 4.5e-05 44_[+2]_68 chr2L:18921402-18921522 5.1e-05 109_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGGCGC width=8 seqs=35 chr2R:14434337-14434457 ( 78) GGTGGCGC 1 chr2R:16800198-16800318 ( 93) GGTGGCGC 1 chrX:18635417-18635537 ( 78) GGTGGCGC 1 chr3L:8749000-8749120 ( 25) GGTGGCGC 1 chr2L:9576800-9576920 ( 76) GGTGGCGC 1 chr2R:21535566-21535686 ( 37) GGTGGCGC 1 chrX:14953995-14954115 ( 92) GGTGGCGC 1 chr3L:18114496-18114616 ( 98) GATGGCGC 1 chr3R:10203712-10203832 ( 61) GATGGCGC 1 chr3L:12526949-12527069 ( 69) GATGGCGC 1 chr2R:12274350-12274470 ( 57) GATGGCGC 1 chr3L:3288570-3288690 ( 70) GATGGCGC 1 chr2L:3472392-3472512 ( 24) GATGGCGC 1 chrX:7710924-7711044 ( 89) GATGGCGC 1 chr3R:16748689-16748809 ( 43) GATGGCGC 1 chr2R:20906658-20906778 ( 96) GATGGCGC 1 chr3L:7356484-7356604 ( 35) GAGGGCGC 1 chrX:17751846-17751966 ( 81) GAGGGCGC 1 chr3L:10899356-10899476 ( 83) GAGGGCGC 1 chr4:406945-407065 ( 90) GAGGGCGC 1 chr2R:23652358-23652478 ( 25) GCTGGCGC 1 chrX:15594646-15594766 ( 43) GCTGGCGC 1 chrX:17531921-17532041 ( 31) AGTGGCGC 1 chr3R:19875715-19875835 ( 14) AGTGGCGC 1 chrX:18517547-18517667 ( 26) AGTGGCGC 1 chr2L:6797579-6797699 ( 82) GGTGTCGC 1 chrX:15653667-15653787 ( 88) GGTGTCGC 1 chr3L:6264593-6264713 ( 65) AGGGGCGC 1 chr2R:11628131-11628251 ( 95) AGGGGCGC 1 chr3R:16919172-16919292 ( 104) GATGTCGC 1 chr3R:13999680-13999800 ( 1) GATGGCGA 1 chrX:7162650-7162770 ( 84) GATGGCGA 1 chr2L:1362365-1362485 ( 38) TGTGGCGC 1 chr2L:1150656-1150776 ( 45) GGTAGCGC 1 chr2L:18921402-18921522 ( 110) GAGGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 2.4e-027 -121 -1177 226 -351 56 -158 141 -1177 -1177 -1177 21 129 -352 -1177 249 -1177 -1177 -1177 241 -193 -1177 255 -1177 -1177 -1177 -1177 254 -1177 -194 242 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 2.4e-027 0.142857 0.000000 0.828571 0.028571 0.485714 0.057143 0.457143 0.000000 0.000000 0.000000 0.200000 0.800000 0.028571 0.000000 0.971429 0.000000 0.000000 0.000000 0.914286 0.085714 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.085714 0.914286 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- G[AG][TG]GGCGC -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCATCT MEME-3 width = 8 sites = 7 llr = 82 E-value = 2.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C a:a9::a: probability G :a:1:::: matrix T :::::a:a bits 2.5 *** * 2.3 *** * 2.0 **** * 1.8 **** * Relative 1.5 ******** Entropy 1.3 ******** (17.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCATCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6323574-6323694 1 5.19e-06 . CGCCATCT ATAAATAAAT chr2L:12424696-12424816 16 5.19e-06 TTTATTCTTG CGCCATCT ATGTACTTGC chr2L:602451-602571 78 5.19e-06 AGTAATAAGA CGCCATCT GGAGTTCGCG chr2R:18514031-18514151 40 5.19e-06 GCGTTACAAT CGCCATCT GTCGGGCGGT chr3R:20948126-20948246 5 5.19e-06 CGAA CGCCATCT ACACTTCGTT chrX:16105849-16105969 84 5.19e-06 ACTAAACTAC CGCCATCT GTTGGTGTTT chr3L:20771144-20771264 1 1.04e-05 . CGCGATCT ATAGTCTAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6323574-6323694 5.2e-06 [+3]_112 chr2L:12424696-12424816 5.2e-06 15_[+3]_97 chr2L:602451-602571 5.2e-06 77_[+3]_35 chr2R:18514031-18514151 5.2e-06 39_[+3]_73 chr3R:20948126-20948246 5.2e-06 4_[+3]_108 chrX:16105849-16105969 5.2e-06 83_[+3]_29 chr3L:20771144-20771264 1e-05 [+3]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCATCT width=8 seqs=7 chr2L:6323574-6323694 ( 1) CGCCATCT 1 chr2L:12424696-12424816 ( 16) CGCCATCT 1 chr2L:602451-602571 ( 78) CGCCATCT 1 chr2R:18514031-18514151 ( 40) CGCCATCT 1 chr3R:20948126-20948246 ( 5) CGCCATCT 1 chrX:16105849-16105969 ( 84) CGCCATCT 1 chr3L:20771144-20771264 ( 1) CGCGATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 2.3e+002 -945 255 -945 -945 -945 -945 253 -945 -945 255 -945 -945 -945 232 -27 -945 160 -945 -945 -945 -945 -945 -945 161 -945 255 -945 -945 -945 -945 -945 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.3e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCATCT MEME-3 regular expression -------------------------------------------------------------------------------- CGCCATCT -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCGCGC MEME-4 width = 8 sites = 7 llr = 79 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 97:a:9:a probability G :3a:719: matrix T ::::3:1: bits 2.5 ** * 2.3 ** * 2.0 ** * * 1.8 **** *** Relative 1.5 ******** Entropy 1.3 ******** (16.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGCGCGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19667060-19667180 71 7.44e-07 GAATGGGCCC CCGCGCGC ACTGAATCCG chr3R:16573972-16574092 77 7.44e-07 GGCGCCACTT CCGCGCGC GAAACCAAAA chr2R:23176723-23176843 65 2.91e-06 GAAGTGCCTG CCGCTCGC TGCCTCAATT chr3R:19164992-19165112 12 6.51e-06 TTTCTCTTTC CCGCGCTC ACGCACAGTG chr2L:3472392-3472512 87 6.51e-06 CGCCACCATG ACGCGCGC TCCGCTAATT chr2R:12274350-12274470 103 7.93e-06 CTGGCGACGG CGGCTCGC ACCGGCTGCA chr3L:20276708-20276828 2 8.68e-06 C CGGCGGGC TACACTGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19667060-19667180 7.4e-07 70_[+4]_42 chr3R:16573972-16574092 7.4e-07 76_[+4]_36 chr2R:23176723-23176843 2.9e-06 64_[+4]_48 chr3R:19164992-19165112 6.5e-06 11_[+4]_101 chr2L:3472392-3472512 6.5e-06 86_[+4]_26 chr2R:12274350-12274470 7.9e-06 102_[+4]_10 chr3L:20276708-20276828 8.7e-06 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCGCGC width=8 seqs=7 chrX:19667060-19667180 ( 71) CCGCGCGC 1 chr3R:16573972-16574092 ( 77) CCGCGCGC 1 chr2R:23176723-23176843 ( 65) CCGCTCGC 1 chr3R:19164992-19165112 ( 12) CCGCGCTC 1 chr2L:3472392-3472512 ( 87) ACGCGCGC 1 chr2R:12274350-12274470 ( 103) CGGCTCGC 1 chr3L:20276708-20276828 ( 2) CGGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 2.3e+003 -120 232 -945 -945 -945 206 73 -945 -945 -945 253 -945 -945 255 -945 -945 -945 -945 205 -19 -945 232 -27 -945 -945 -945 231 -119 -945 255 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.3e+003 0.142857 0.857143 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGCGC MEME-4 regular expression -------------------------------------------------------------------------------- C[CG]GC[GT]CGC -------------------------------------------------------------------------------- Time 26.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GKGCKGCV MEME-5 width = 8 sites = 15 llr = 150 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::3 pos.-specific C 11:a::a3 probability G 93a:4a:3 matrix T :5::6::: bits 2.5 ** ** 2.3 ** ** 2.0 * ** ** 1.8 * ** ** Relative 1.5 * ** ** Entropy 1.3 * ** ** (14.4 bits) 1.0 * ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGCTGCA consensus G G C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18784680-18784800 81 1.51e-06 tttttcatac gggcggcc accccttttc chr2L:19517452-19517572 97 4.38e-06 CAGTTCCACT GTGCGGCG AAGCTTTTGC chrX:17531921-17532041 23 4.38e-06 GGAAATGTGT GTGCGGCG AGTGGCGCCA chr3R:5613199-5613319 105 7.25e-06 AACAGTTATT GGGCTGCC ATCTGGGG chr3R:10161304-10161424 26 7.25e-06 AAAAATACCA GGGCTGCC AGCTACACAA chr3R:9605213-9605333 31 1.27e-05 ATTGATTTTA GTGCTGCG ATCATGCTAC chrX:18517547-18517667 38 1.27e-05 TGGCGCTGTA GTGCTGCG TTTCAGTGTG chr3R:26006012-26006132 103 2.12e-05 TTTGCCTCGT GCGCGGCC TGCTGCTGTT chr3R:18215461-18215581 1 2.12e-05 . GGGCTGCA ACTACGAAAT chr3R:30413918-30414038 2 2.64e-05 T GTGCTGCA AACACTTGGG chrX:2396647-2396767 69 2.64e-05 GATTGCAAAT GTGCTGCA ACCACAATCA chr3L:13450277-13450397 81 2.64e-05 TTAAACTGAA GTGCTGCA GTGAATTTAA chr3R:17231687-17231807 29 3.07e-05 CGAGTCCGAG GCGCGGCA AGCTTAAGTT chr2R:14434337-14434457 111 3.50e-05 AGGCGAATTG CGGCGGCG AA chr2L:9224576-9224696 94 4.61e-05 TGCCACTGCC CTGCTGCC CCTACCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18784680-18784800 1.5e-06 80_[+5]_32 chr2L:19517452-19517572 4.4e-06 96_[+5]_16 chrX:17531921-17532041 4.4e-06 22_[+5]_90 chr3R:5613199-5613319 7.3e-06 104_[+5]_8 chr3R:10161304-10161424 7.3e-06 25_[+5]_87 chr3R:9605213-9605333 1.3e-05 30_[+5]_82 chrX:18517547-18517667 1.3e-05 37_[+5]_75 chr3R:26006012-26006132 2.1e-05 102_[+5]_10 chr3R:18215461-18215581 2.1e-05 [+5]_112 chr3R:30413918-30414038 2.6e-05 1_[+5]_111 chrX:2396647-2396767 2.6e-05 68_[+5]_44 chr3L:13450277-13450397 2.6e-05 80_[+5]_32 chr3R:17231687-17231807 3.1e-05 28_[+5]_84 chr2R:14434337-14434457 3.5e-05 110_[+5]_2 chr2L:9224576-9224696 4.6e-05 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGCKGCV width=8 seqs=15 chr3L:18784680-18784800 ( 81) GGGCGGCC 1 chr2L:19517452-19517572 ( 97) GTGCGGCG 1 chrX:17531921-17532041 ( 23) GTGCGGCG 1 chr3R:5613199-5613319 ( 105) GGGCTGCC 1 chr3R:10161304-10161424 ( 26) GGGCTGCC 1 chr3R:9605213-9605333 ( 31) GTGCTGCG 1 chrX:18517547-18517667 ( 38) GTGCTGCG 1 chr3R:26006012-26006132 ( 103) GCGCGGCC 1 chr3R:18215461-18215581 ( 1) GGGCTGCA 1 chr3R:30413918-30414038 ( 2) GTGCTGCA 1 chrX:2396647-2396767 ( 69) GTGCTGCA 1 chr3L:13450277-13450397 ( 81) GTGCTGCA 1 chr3R:17231687-17231807 ( 29) GCGCGGCA 1 chr2R:14434337-14434457 ( 111) CGGCGGCG 1 chr2L:9224576-9224696 ( 94) CTGCTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 1.3e+003 -1055 -36 233 -1055 -1055 -36 95 71 -1055 -1055 254 -1055 -1055 255 -1055 -1055 -1055 -1055 121 88 -1055 -1055 254 -1055 -1055 255 -1055 -1055 2 96 95 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.3e+003 0.000000 0.133333 0.866667 0.000000 0.000000 0.133333 0.333333 0.533333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.333333 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCKGCV MEME-5 regular expression -------------------------------------------------------------------------------- G[TG]GC[TG]GC[ACG] -------------------------------------------------------------------------------- Time 32.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20906658-20906778 2.06e-06 24_[+1(2.92e-05)]_63_[+2(4.20e-06)]_\ 17 chrX:17820352-17820472 6.06e-06 16_[+1(1.43e-06)]_96 chr2R:22661299-22661419 9.22e-01 120 chr2L:5771293-5771413 5.83e-05 51_[+1(6.31e-06)]_61 chrX:16105849-16105969 1.26e-06 14_[+1(4.16e-06)]_61_[+3(5.19e-06)]_\ 29 chr2L:20463487-20463607 9.25e-01 120 chr2L:5743664-5743784 9.19e-01 120 chrX:15653667-15653787 2.93e-04 30_[+1(1.32e-05)]_49_[+2(2.22e-05)]_\ 25 chr2L:14161004-14161124 4.64e-05 34_[+2(4.20e-06)]_78 chrX:18517547-18517667 2.68e-09 25_[+2(1.06e-05)]_4_[+5(1.27e-05)]_\ 24_[+1(6.31e-06)]_43 chr2R:15818622-15818742 9.02e-06 71_[+1(1.43e-06)]_41 chr4:406945-407065 1.41e-02 32_[+2(3.42e-05)]_49_[+2(6.41e-06)]_\ 23 chr3L:11484644-11484764 6.42e-01 120 chr3L:13411166-13411286 5.14e-03 37_[+1(2.92e-05)]_75 chr2R:16551916-16552036 1.52e-05 88_[+1(1.43e-06)]_24 chrX:7162650-7162770 1.49e-06 41_[+1(1.05e-05)]_34_[+2(3.42e-05)]_\ 29 chrX:15594646-15594766 4.81e-02 42_[+2(7.84e-06)]_70 chr3R:22108428-22108548 9.98e-01 120 chr3R:16573972-16574092 1.40e-08 63_[+2(1.44e-06)]_5_[+4(7.44e-07)]_\ 36 chr3R:17231687-17231807 1.27e-02 28_[+5(3.07e-05)]_84 chr3L:8029499-8029619 3.02e-02 120 chr2L:4292749-4292869 9.76e-01 120 chr2L:1362365-1362485 1.08e-06 41_[+1(4.16e-06)]_17_[+1(4.16e-06)]_\ 46 chr3R:8923026-8923146 6.78e-01 120 chr3L:9614101-9614221 2.43e-04 76_[+1(1.60e-05)]_36 chr2L:4861647-4861767 9.99e-01 120 chr3R:16748689-16748809 5.86e-08 42_[+2(4.20e-06)]_14_[+3(5.19e-06)]_\ 48 chr2R:11628131-11628251 2.81e-06 49_[+4(1.15e-05)]_37_[+2(2.36e-05)]_\ 18 chr2R:21514464-21514584 6.35e-01 120 chrX:7710924-7711044 1.49e-04 42_[+2(4.20e-06)]_38_[+2(4.20e-06)]_\ 24 chr2L:10986280-10986400 4.83e-01 120 chr2L:1916552-1916672 3.47e-01 120 chr2L:4133218-4133338 9.82e-01 120 chr3R:19875715-19875835 7.31e-04 13_[+2(1.06e-05)]_99 chr2L:16816076-16816196 2.12e-05 59_[+1(1.43e-06)]_53 chr2L:19059056-19059176 7.45e-01 120 chrX:14953995-14954115 6.43e-05 91_[+2(1.44e-06)]_21 chr2L:3472392-3472512 7.17e-09 23_[+2(4.20e-06)]_44_[+1(1.43e-06)]_\ 3_[+4(6.51e-06)]_26 chr3L:3288570-3288690 3.23e-08 16_[+1(4.16e-06)]_45_[+2(4.20e-06)]_\ 43 chr3R:21419993-21420113 6.93e-01 120 chr2R:25085537-25085657 3.33e-06 35_[+1(4.16e-06)]_77 chr2R:21535566-21535686 1.12e-02 36_[+2(1.44e-06)]_58_[+2(3.42e-05)]_\ 10 chr2R:11176246-11176366 5.75e-01 120 chr2R:10160329-10160449 3.49e-01 120 chr3L:11285287-11285407 9.99e-01 120 chr3L:10899356-10899476 2.95e-07 25_[+1(6.31e-06)]_49_[+2(6.41e-06)]_\ 30 chrX:12241189-12241309 3.82e-01 120 chr2R:20994777-20994897 1.04e-04 81_[+3(5.19e-06)]_31 chr3L:16544351-16544471 1.00e+00 120 chr3R:28851978-28852098 2.73e-01 120 chrX:13789106-13789226 5.01e-01 120 chr3L:20771144-20771264 4.17e-02 [+3(1.04e-05)]_112 chr3L:8445111-8445231 9.97e-01 120 chr3L:3814660-3814780 5.01e-01 120 chr3L:12037938-12038058 8.60e-01 120 chr3R:14077177-14077297 9.67e-01 120 chr3R:23067475-23067595 9.08e-01 120 chr2L:14024794-14024914 8.69e-01 120 chr2L:9576800-9576920 3.72e-03 44_[+2(2.22e-05)]_23_[+2(1.44e-06)]_\ 37 chr3L:8749000-8749120 1.51e-03 24_[+2(1.44e-06)]_88 chr2L:7149059-7149179 4.36e-01 120 chr3L:22277392-22277512 1.05e-01 120 chr3R:26235195-26235315 1.45e-01 120 chr2L:18666031-18666151 4.42e-02 120 chr3R:20008795-20008915 4.15e-01 120 chr2L:6357082-6357202 3.19e-01 120 chr2L:18900022-18900142 9.17e-01 120 chr3R:17617276-17617396 8.22e-04 57_[+3(5.19e-06)]_55 chr2L:19930232-19930352 3.10e-01 120 chr3R:18215461-18215581 1.27e-01 [+5(2.12e-05)]_112 chr2L:18505679-18505799 3.01e-01 120 chr2R:12274350-12274470 1.24e-10 56_[+2(4.20e-06)]_21_[+1(1.43e-06)]_\ 9_[+4(7.93e-06)]_2_[+5(5.45e-05)] chr2R:16849572-16849692 9.66e-01 120 chr3L:20276708-20276828 5.55e-03 1_[+4(8.68e-06)]_111 chr2R:18451087-18451207 9.95e-01 120 chr3L:6969344-6969464 9.91e-01 120 chr3R:20948126-20948246 5.01e-06 4_[+3(5.19e-06)]_43_[+1(1.43e-06)]_\ 57 chr3R:11872851-11872971 5.45e-01 120 chr3R:29089774-29089894 9.98e-01 120 chrX:18635417-18635537 7.87e-03 37_[+2(4.20e-06)]_32_[+2(1.44e-06)]_\ 35 chr2R:9109758-9109878 1.00e+00 120 chr2R:16800198-16800318 2.17e-07 21_[+1(1.43e-06)]_25_[+2(3.42e-05)]_\ 30_[+2(1.44e-06)]_20 chr2L:7957089-7957209 9.84e-01 120 chr3L:11334146-11334266 9.75e-01 120 chr2L:7532742-7532862 7.24e-01 120 chr3R:21887606-21887726 2.19e-01 120 chr2L:8610992-8611112 5.68e-01 120 chr3R:15652691-15652811 8.38e-03 1_[+1(1.05e-05)]_111 chr3L:630203-630323 9.31e-01 120 chr3R:26006012-26006132 1.18e-04 15_[+4(2.27e-05)]_79_[+5(2.12e-05)]_\ 10 chr3R:10636167-10636287 7.20e-01 120 chrX:10600635-10600755 8.65e-02 120 chr2L:7492039-7492159 7.32e-01 120 chr3L:14622520-14622640 2.32e-01 120 chr2L:8982730-8982850 1.00e+00 120 chr2L:3587456-3587576 8.97e-01 120 chr2L:16544686-16544806 9.51e-01 120 chr3L:13450277-13450397 9.97e-02 80_[+5(2.64e-05)]_32 chr3L:12526949-12527069 1.60e-03 68_[+2(4.20e-06)]_44 chr3R:29690623-29690743 4.57e-01 120 chr3L:12668121-12668241 9.92e-01 120 chr3R:10628408-10628528 9.69e-01 120 chr3R:10203712-10203832 6.98e-03 60_[+2(4.20e-06)]_52 chr2R:17533756-17533876 9.48e-01 120 chr2L:21149252-21149372 9.13e-01 120 chr2L:19490290-19490410 3.50e-01 120 chrX:2396647-2396767 2.53e-02 68_[+5(2.64e-05)]_44 chrX:6615595-6615715 9.90e-01 120 chrX:5639263-5639383 3.56e-02 120 chrX:8125240-8125360 6.03e-02 120 chr3R:5636886-5637006 7.78e-01 120 chr3R:21612949-21613069 5.67e-01 120 chr2L:9224576-9224696 3.85e-03 93_[+5(4.61e-05)]_19 chr2L:19377574-19377694 9.65e-01 120 chr3R:26014319-26014439 9.75e-01 120 chr2R:8914035-8914155 1.76e-02 120 chr3L:4607811-4607931 4.72e-02 75_[+1(7.71e-05)]_37 chr2L:7258233-7258353 1.60e-05 25_[+1(1.32e-05)]_46_[+1(4.16e-06)]_\ 33 chrX:18921080-18921200 9.44e-01 120 chr3R:10161304-10161424 8.15e-03 25_[+5(7.25e-06)]_17_[+5(8.65e-05)]_\ 62 chr3L:14335976-14336096 1.00e+00 120 chr3R:10648970-10649090 9.87e-01 120 chrX:17751846-17751966 3.23e-04 80_[+2(6.41e-06)]_32 chr3L:18402827-18402947 2.60e-01 120 chr3L:11074571-11074691 9.16e-01 120 chr3R:26105993-26106113 2.84e-01 120 chr3L:15691311-15691431 9.93e-01 120 chr3L:5554538-5554658 2.99e-02 120 chr3L:6264593-6264713 2.95e-07 11_[+1(4.16e-06)]_45_[+2(2.36e-05)]_\ 48 chr3R:5686504-5686624 3.31e-01 120 chr3R:22121374-22121494 8.31e-01 120 chr3R:13999680-13999800 1.60e-01 [+2(3.42e-05)]_112 chr3L:745650-745770 4.25e-01 120 chr3R:16718085-16718205 9.79e-01 120 chr3R:26117754-26117874 7.62e-01 120 chr3R:16834772-16834892 2.58e-06 44_[+1(2.92e-05)]_43_[+1(4.16e-06)]_\ 17 chr2L:3444931-3445051 6.49e-01 120 chr3L:14999688-14999808 2.39e-01 120 chr2R:23574941-23575061 1.01e-01 120 chr3R:20588567-20588687 4.00e-04 97_[+3(5.19e-06)]_15 chr3L:5988858-5988978 6.94e-01 120 chr3R:19627999-19628119 8.62e-01 120 chr2R:18514031-18514151 7.82e-05 39_[+3(5.19e-06)]_73 chr3L:2159063-2159183 9.87e-01 120 chr3R:19164992-19165112 3.64e-03 11_[+4(6.51e-06)]_101 chr3R:26444292-26444412 9.92e-01 120 chr2L:13073888-13074008 3.40e-01 120 chr3R:22625790-22625910 1.58e-01 120 chr3L:5789850-5789970 9.70e-01 120 chr2L:21163448-21163568 4.02e-01 120 chr3R:28677013-28677133 8.41e-02 120 chrX:17531921-17532041 1.64e-09 22_[+5(4.38e-06)]_4_[+1(4.16e-06)]_\ 59_[+1(1.43e-06)]_11 chrX:4010961-4011081 4.82e-01 120 chr2L:7270424-7270544 7.84e-01 120 chr3R:18242153-18242273 2.06e-01 120 chr3R:6818714-6818834 7.69e-01 120 chr2L:19517452-19517572 3.46e-02 96_[+5(4.38e-06)]_16 chr3R:8563935-8564055 9.45e-01 120 chrX:13128042-13128162 3.39e-01 120 chr3R:17400793-17400913 9.74e-01 120 chr2R:21018395-21018515 9.98e-01 120 chr3L:16385965-16386085 2.58e-02 120 chr2R:23868649-23868769 9.68e-01 120 chrX:3367380-3367500 5.26e-01 120 chr3R:29859942-29860062 8.16e-01 120 chr2R:21503229-21503349 3.08e-01 120 chr2R:9286605-9286725 2.58e-01 120 chr2L:602451-602571 1.33e-07 15_[+2(1.44e-06)]_54_[+3(5.19e-06)]_\ 35 chr2R:9935967-9936087 4.72e-01 120 chr2R:11809418-11809538 2.54e-02 4_[+4(2.54e-05)]_108 chr3L:17242247-17242367 7.59e-01 120 chr3R:29738054-29738174 9.99e-01 120 chr3L:13189413-13189533 3.57e-01 120 chr2L:10698138-10698258 2.38e-01 120 chrX:12242543-12242663 1.70e-01 120 chr3L:16710369-16710489 9.94e-01 120 chr3R:26172161-26172281 2.67e-01 120 chrX:9349350-9349470 8.99e-01 120 chr3R:24010964-24011084 9.93e-01 120 chr3L:1376141-1376261 6.76e-01 120 chr2R:23940156-23940276 1.00e+00 120 chr2L:10468539-10468659 2.88e-01 120 chr2L:8602721-8602841 6.11e-01 120 chr3R:8960426-8960546 9.98e-01 120 chr3R:23028654-23028774 7.64e-01 120 chr2R:23176723-23176843 1.15e-04 64_[+4(2.91e-06)]_48 chr2R:21017433-21017553 4.55e-01 120 chr2R:18850629-18850749 9.77e-01 120 chr2L:12424696-12424816 1.19e-06 14_[+1(4.16e-06)]_28_[+1(1.43e-06)]_\ 62 chr3L:7356484-7356604 1.05e-03 34_[+2(6.41e-06)]_78 chr2L:10856580-10856700 1.63e-01 120 chr2R:23652358-23652478 1.53e-07 28_[+1(4.16e-06)]_31_[+1(1.43e-06)]_\ 45 chr3R:30413918-30414038 1.50e-02 1_[+5(2.64e-05)]_111 chrX:19667060-19667180 2.66e-04 70_[+4(7.44e-07)]_42 chr3L:10206303-10206423 1.00e+00 120 chr2R:18528514-18528634 7.26e-01 120 chr2L:4847316-4847436 3.08e-02 8_[+1(3.99e-05)]_104 chr2L:522868-522988 9.97e-01 120 chr3L:2152105-2152225 3.01e-01 120 chr3L:13197644-13197764 9.43e-01 120 chr2R:11095285-11095405 5.20e-01 120 chr3R:25004887-25005007 1.00e+00 120 chr2L:18921402-18921522 2.36e-01 109_[+2(5.10e-05)]_3 chr3L:12336392-12336512 6.63e-02 120 chr2L:12721079-12721199 8.60e-01 120 chr3R:5613199-5613319 1.93e-03 104_[+5(7.25e-06)]_8 chr3R:9605213-9605333 5.11e-03 30_[+5(1.27e-05)]_82 chr2L:20881497-20881617 3.54e-02 120 chr2L:3566668-3566788 8.49e-01 120 chr3L:15311572-15311692 1.00e+00 120 chr3R:8984649-8984769 2.49e-01 120 chr2L:17243514-17243634 9.80e-01 120 chr2L:15248754-15248874 9.56e-01 120 chr3L:16779705-16779825 7.06e-01 120 chr3R:16919172-16919292 5.24e-07 52_[+1(1.43e-06)]_43_[+2(3.42e-05)]_\ 9 chr2R:12468354-12468474 3.58e-01 120 chr3L:18114496-18114616 3.76e-06 97_[+2(4.20e-06)]_15 chr3R:28631974-28632094 8.94e-01 120 chrX:13644198-13644318 7.68e-01 120 chr3R:23174875-23174995 8.55e-01 120 chr2R:12605711-12605831 8.86e-01 120 chr3R:31064770-31064890 8.65e-01 120 chr2L:9598566-9598686 3.31e-04 120 chr2R:15477998-15478118 9.93e-01 120 chr3L:613731-613851 9.63e-01 120 chr3R:30532064-30532184 9.85e-01 120 chr2R:14434337-14434457 2.09e-07 17_[+1(2.92e-05)]_52_[+2(1.44e-06)]_\ 25_[+5(3.50e-05)]_2 chr2L:14094772-14094892 9.18e-03 14_[+4(4.19e-05)]_98 chr2R:13429209-13429329 5.95e-01 120 chr2R:13055041-13055161 1.84e-01 120 chr2L:4856264-4856384 9.96e-01 120 chr2L:6797579-6797699 5.23e-03 81_[+2(2.22e-05)]_31 chr2L:5543150-5543270 2.01e-01 120 chr3L:18784680-18784800 1.38e-03 80_[+5(1.51e-06)]_32 chrX:11629098-11629218 1.72e-01 120 chr3L:2372029-2372149 1.00e+00 120 chr2L:6323574-6323694 1.10e-06 [+3(5.19e-06)]_73_[+2(1.06e-05)]_31 chr2R:20153977-20154097 1.89e-01 120 chrX:1052834-1052954 1.42e-01 120 chr2R:23554572-23554692 7.24e-01 120 chr2L:19159319-19159439 2.81e-01 120 chr2L:10442061-10442181 2.63e-01 120 chr2L:6830535-6830655 5.68e-01 120 chr2R:12652588-12652708 3.92e-01 120 chr2R:7490391-7490511 1.79e-01 120 chr3R:16469742-16469862 9.96e-01 120 chr2L:1150656-1150776 2.09e-03 44_[+2(4.54e-05)]_68 chr3L:4282772-4282892 6.50e-02 120 chr2L:7632926-7633046 2.60e-01 120 chr4:404476-404596 7.19e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************