******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplmβ-HLH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:6553459-6553579 1.0000 120 chr3R:6335093-6335213 1.0000 120 chr2R:25024155-25024275 1.0000 120 chr2L:9728907-9729027 1.0000 120 chr3L:2551390-2551510 1.0000 120 chrX:3002389-3002509 1.0000 120 chr2L:6553668-6553788 1.0000 120 chrX:12480370-12480490 1.0000 120 chr3R:27071306-27071426 1.0000 120 chr2R:21614499-21614619 1.0000 120 chr2R:12565699-12565819 1.0000 120 chrX:17252238-17252358 1.0000 120 chr2L:11034496-11034616 1.0000 120 chr2R:21550027-21550147 1.0000 120 chr3L:12090344-12090464 1.0000 120 chr3R:25999177-25999297 1.0000 120 chr3L:3845841-3845961 1.0000 120 chr3R:14414919-14415039 1.0000 120 chr3R:19091210-19091330 1.0000 120 chr2L:6198980-6199100 1.0000 120 chr3R:26008583-26008703 1.0000 120 chr3R:26009894-26010014 1.0000 120 chr2R:13563644-13563764 1.0000 120 chr2R:13564677-13564797 1.0000 120 chr3R:26002860-26002980 1.0000 120 chr2R:6595903-6596023 1.0000 120 chr3L:8698043-8698163 1.0000 120 chr2L:15425831-15425951 1.0000 120 chr3R:15117843-15117963 1.0000 120 chr2R:12547697-12547817 1.0000 120 chr3R:21777815-21777935 1.0000 120 chr3R:26002653-26002773 1.0000 120 chrX:12480574-12480694 1.0000 120 chr2R:19669103-19669223 1.0000 120 chr2R:16848191-16848311 1.0000 120 chrX:3099367-3099487 1.0000 120 chr3R:16229060-16229180 1.0000 120 chrX:13322441-13322561 1.0000 120 chrX:9729109-9729229 1.0000 120 chr3R:8277874-8277994 1.0000 120 chr2R:11494693-11494813 1.0000 120 chr2R:6235883-6236003 1.0000 120 chrX:5988463-5988583 1.0000 120 chrX:18243997-18244117 1.0000 120 chr3R:26034961-26035081 1.0000 120 chr3L:3266456-3266576 1.0000 120 chr3R:26032167-26032287 1.0000 120 chr3R:14486620-14486740 1.0000 120 chr3L:8693956-8694076 1.0000 120 chr3R:5279753-5279873 1.0000 120 chr3R:18121881-18122001 1.0000 120 chr3R:27139721-27139841 1.0000 120 chr2R:21550234-21550354 1.0000 120 chr2L:14422456-14422576 1.0000 120 chr3R:9027207-9027327 1.0000 120 chr3L:16025059-16025179 1.0000 120 chr3L:16820064-16820184 1.0000 120 chr3R:26030711-26030831 1.0000 120 chr3R:18106334-18106454 1.0000 120 chr3R:8108974-8109094 1.0000 120 chr3R:26013552-26013672 1.0000 120 chr2R:12392798-12392918 1.0000 120 chr3R:9891026-9891146 1.0000 120 chr2L:14699732-14699852 1.0000 120 chrX:487550-487670 1.0000 120 chr3R:8924091-8924211 1.0000 120 chr3R:30160384-30160504 1.0000 120 chr2R:11950868-11950988 1.0000 120 chr3R:12477366-12477486 1.0000 120 chr3L:16338030-16338150 1.0000 120 chr3R:13976299-13976419 1.0000 120 chr3R:18244173-18244293 1.0000 120 chr3R:25999440-25999560 1.0000 120 chr3R:16552435-16552555 1.0000 120 chr2L:15416511-15416631 1.0000 120 chr2L:13512891-13513011 1.0000 120 chr2L:18562972-18563092 1.0000 120 chr2R:13561110-13561230 1.0000 120 chr2R:6622210-6622330 1.0000 120 chr3L:17399518-17399638 1.0000 120 chr3R:28331037-28331157 1.0000 120 chr3R:5247173-5247293 1.0000 120 chr2L:5898463-5898583 1.0000 120 chr3R:30718665-30718785 1.0000 120 chr3L:18183396-18183516 1.0000 120 chr2R:14807681-14807801 1.0000 120 chr2L:16519705-16519825 1.0000 120 chr2L:19869453-19869573 1.0000 120 chr2L:2415189-2415309 1.0000 120 chr3L:17612395-17612515 1.0000 120 chr3L:11272783-11272903 1.0000 120 chr3R:9024957-9025077 1.0000 120 chr2L:14396437-14396557 1.0000 120 chr2L:20821415-20821535 1.0000 120 chr3R:26010736-26010856 1.0000 120 chr3R:10284263-10284383 1.0000 120 chr3L:17591036-17591156 1.0000 120 chr3R:16948696-16948816 1.0000 120 chr3R:12562168-12562288 1.0000 120 chr2R:13166907-13167027 1.0000 120 chr3R:26032372-26032492 1.0000 120 chr2L:7875857-7875977 1.0000 120 chr2L:19037197-19037317 1.0000 120 chr3R:14001581-14001701 1.0000 120 chr3L:4461809-4461929 1.0000 120 chr3R:26014415-26014535 1.0000 120 chr3R:24798768-24798888 1.0000 120 chr2L:19897106-19897226 1.0000 120 chrX:4457805-4457925 1.0000 120 chr2R:14031586-14031706 1.0000 120 chr3L:1098548-1098668 1.0000 120 chr2L:6701749-6701869 1.0000 120 chr2L:8857869-8857989 1.0000 120 chr2L:7254904-7255024 1.0000 120 chr2R:25170615-25170735 1.0000 120 chr3L:2853079-2853199 1.0000 120 chr2R:25198573-25198693 1.0000 120 chr2L:10608760-10608880 1.0000 120 chr3L:11293527-11293647 1.0000 120 chr2R:12565900-12566020 1.0000 120 chr2L:13079602-13079722 1.0000 120 chr3R:22583139-22583259 1.0000 120 chr3L:1083496-1083616 1.0000 120 chr2R:9078150-9078270 1.0000 120 chr3R:21349448-21349568 1.0000 120 chr2L:19321030-19321150 1.0000 120 chr3R:8682167-8682287 1.0000 120 chr3R:21420030-21420150 1.0000 120 chr2L:12096401-12096521 1.0000 120 chr3L:4445961-4446081 1.0000 120 chr2L:18953988-18954108 1.0000 120 chr2R:13570827-13570947 1.0000 120 chr3R:17605182-17605302 1.0000 120 chr2R:12916701-12916821 1.0000 120 chr2R:13534178-13534298 1.0000 120 chr2L:12003348-12003468 1.0000 120 chr2L:19452837-19452957 1.0000 120 chr2R:13565977-13566097 1.0000 120 chr3R:30474792-30474912 1.0000 120 chr3L:5653710-5653830 1.0000 120 chrX:17302619-17302739 1.0000 120 chr2R:5754520-5754640 1.0000 120 chr2L:7624303-7624423 1.0000 120 chr3L:9505487-9505607 1.0000 120 chr3L:3384461-3384581 1.0000 120 chrX:458006-458126 1.0000 120 chr3L:92012-92132 1.0000 120 chr3R:10688962-10689082 1.0000 120 chr3L:1818962-1819082 1.0000 120 chrX:8444998-8445118 1.0000 120 chr3R:23460840-23460960 1.0000 120 chr3R:22886892-22887012 1.0000 120 chr2L:3108251-3108371 1.0000 120 chrX:16930704-16930824 1.0000 120 chr3L:11285283-11285403 1.0000 120 chr3R:9932590-9932710 1.0000 120 chr3R:9237941-9238061 1.0000 120 chr3R:26040020-26040140 1.0000 120 chr2R:17639247-17639367 1.0000 120 chr3R:22039557-22039677 1.0000 120 chr2L:15333676-15333796 1.0000 120 chr2L:3569894-3570014 1.0000 120 chr3R:25754998-25755118 1.0000 120 chr3L:19016325-19016445 1.0000 120 chr2R:22661390-22661510 1.0000 120 chr3R:6414853-6414973 1.0000 120 chr3L:3846050-3846170 1.0000 120 chr2R:14305154-14305274 1.0000 120 chr2R:14186561-14186681 1.0000 120 chrX:11622316-11622436 1.0000 120 chr3R:6368634-6368754 1.0000 120 chr2L:9454489-9454609 1.0000 120 chr2L:273704-273824 1.0000 120 chrX:5696124-5696244 1.0000 120 chr3R:26462338-26462458 1.0000 120 chr3R:7892768-7892888 1.0000 120 chrX:17293492-17293612 1.0000 120 chrX:11622116-11622236 1.0000 120 chr2L:17428037-17428157 1.0000 120 chrX:9350437-9350557 1.0000 120 chrX:9202188-9202308 1.0000 120 chr3R:16213898-16214018 1.0000 120 chr3R:11243219-11243339 1.0000 120 chr3L:11419613-11419733 1.0000 120 chr2R:9494555-9494675 1.0000 120 chr2R:16581766-16581886 1.0000 120 chrX:476634-476754 1.0000 120 chr3R:14095575-14095695 1.0000 120 chr3L:16657046-16657166 1.0000 120 chr3L:6807604-6807724 1.0000 120 chr3L:17653240-17653360 1.0000 120 chr3L:16840612-16840732 1.0000 120 chr3R:26006314-26006434 1.0000 120 chr2L:18548831-18548951 1.0000 120 chr3R:9430562-9430682 1.0000 120 chr3R:26006086-26006206 1.0000 120 chrX:6067656-6067776 1.0000 120 chr3R:21134058-21134178 1.0000 120 chr3L:17113390-17113510 1.0000 120 chr3L:10893494-10893614 1.0000 120 chr2L:10986348-10986468 1.0000 120 chrX:17330453-17330573 1.0000 120 chr2R:8670243-8670363 1.0000 120 chrX:17582071-17582191 1.0000 120 chr3R:18906242-18906362 1.0000 120 chr2R:13996690-13996810 1.0000 120 chrX:9155978-9156098 1.0000 120 chr3L:14611418-14611538 1.0000 120 chr2L:21789718-21789838 1.0000 120 chr3L:17310610-17310730 1.0000 120 chr3L:15999734-15999854 1.0000 120 chr3R:5620370-5620490 1.0000 120 chr2R:12035148-12035268 1.0000 120 chr3L:11820008-11820128 1.0000 120 chr3R:26020648-26020768 1.0000 120 chr3L:7360496-7360616 1.0000 120 chr2L:19135116-19135236 1.0000 120 chrX:1899510-1899630 1.0000 120 chr2L:17588814-17588934 1.0000 120 chr2L:18966997-18967117 1.0000 120 chr3L:19087996-19088116 1.0000 120 chr2R:17469458-17469578 1.0000 120 chrX:18282490-18282610 1.0000 120 chr3R:30305099-30305219 1.0000 120 chr2L:1619290-1619410 1.0000 120 chr2R:10551856-10551976 1.0000 120 chr3L:18102174-18102294 1.0000 120 chr3L:12271401-12271521 1.0000 120 chr2L:5445942-5446062 1.0000 120 chr3R:26035162-26035282 1.0000 120 chrX:9580312-9580432 1.0000 120 chr3R:11368814-11368934 1.0000 120 chr2R:7054310-7054430 1.0000 120 chr3L:14999768-14999888 1.0000 120 chr2R:7879077-7879197 1.0000 120 chr2R:8127351-8127471 1.0000 120 chr3L:6157723-6157843 1.0000 120 chr2L:19059041-19059161 1.0000 120 chr2R:22242131-22242251 1.0000 120 chr2R:9711989-9712109 1.0000 120 chr3L:18114116-18114236 1.0000 120 chr3R:13964606-13964726 1.0000 120 chr3L:7360700-7360820 1.0000 120 chr2R:12174581-12174701 1.0000 120 chrX:17125269-17125389 1.0000 120 chrX:5965977-5966097 1.0000 120 chr3L:17937501-17937621 1.0000 120 chr2R:11809477-11809597 1.0000 120 chr2L:6830292-6830412 1.0000 120 chr3L:19016540-19016660 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Esplmβ-HLH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplmβ-HLH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.205 G 0.207 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.205 G 0.207 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCACGTGC MEME-1 width = 8 sites = 110 llr = 920 E-value = 1.9e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:7::1:1 pos.-specific C 1a:a:3:7 probability G 7:3:a:a: matrix T ::1::6:2 bits 2.3 * ** * 2.1 * ** * 1.8 * ** * 1.6 * ** * Relative 1.4 * ** * Entropy 1.1 * ** * (12.1 bits) 0.9 ** ** * 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACGTGC consensus G C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8670243-8670363 107 6.60e-06 TTTCACTCGA GCACGTGC TCGGCG chr2R:5754520-5754640 41 6.60e-06 TTTCAAAGCC GCACGTGC TAAATTTAAC chr2L:12003348-12003468 54 6.60e-06 GCACAACACG GCACGTGC TGCTGCACAC chr3R:8108974-8109094 32 6.60e-06 TTTTGCTTTG GCACGTGC TGTGAGATAA chr3R:5279753-5279873 27 6.60e-06 CGCCACTTCG GCACGTGC TCGGCACAAT chrX:18243997-18244117 88 6.60e-06 CTGCGATAAG GCACGTGC TGCTATAGTA chr2R:6235883-6236003 46 6.60e-06 GACTTGTCGA GCACGTGC TACGGCGTTG chr3R:8277874-8277994 59 6.60e-06 CACTCGGGCG GCACGTGC TGCCTTCTGT chr3R:16229060-16229180 59 6.60e-06 TAGGCCGGCA GCACGTGC TAAGCACATT chr2L:15425831-15425951 48 6.60e-06 TAAAAAGCGA GCACGTGC CACAGGGACT chr2R:13564677-13564797 104 6.60e-06 AAACTCTGTG GCACGTGC CACACTTTC chr3L:12090344-12090464 62 6.60e-06 tgttgCGTTG GCACGTGC GTCAAAAGCG chrX:17252238-17252358 75 6.60e-06 TGTTCGCTCA GCACGTGC CGCGCTCCAC chr2R:12565699-12565819 17 6.60e-06 AATTTCGTTA GCACGTGC CCAGCCGCAC chr3R:21349448-21349568 104 1.12e-05 TTTCTACGCG GCACGCGC TGCACGTCC chr3L:2853079-2853199 66 1.12e-05 TACATTGTTG GCACGCGC AGGCGCGCAC chr2L:6701749-6701869 67 1.12e-05 CCGATTAACA GCACGCGC GTCCAATTCA chr3L:17612395-17612515 105 1.12e-05 ACTGTAAATC GCACGCGC TGTTGTCA chr2L:2415189-2415309 32 1.12e-05 ACAACTGCGG GCACGCGC GGTATTCCAA chr2R:6622210-6622330 35 1.12e-05 tttctgcttg gcacgcgc catgcagacg chr3R:30160384-30160504 13 1.12e-05 TACCGTTTAA GCACGCGC CTCCAACAGT chrX:13322441-13322561 21 1.12e-05 GTTAATTGAA GCACGCGC CAAAGCCCCC chr2R:19669103-19669223 84 1.12e-05 acacaaacag gcacgcgc cgtatacata chr3L:3845841-3845961 17 1.12e-05 GGCCAAGTTG GCACGCGC CGGCGCACTC chr2R:21550027-21550147 52 1.12e-05 ACGGCGACAG GCACGCGC TGACTTTTGC chrX:12480370-12480490 39 1.12e-05 GTACAAACGC GCACGCGC TGCCGTTGTC chrX:1899510-1899630 57 1.59e-05 TTGCAACACC GCGCGTGC GGAGTGCggg chr2L:21789718-21789838 4 1.59e-05 GAG GCGCGTGC CCCGCTCTGA chrX:9155978-9156098 71 1.59e-05 ACACATCAAC GCGCGTGC CACTTAAGAA chrX:17302619-17302739 90 1.59e-05 CTGTGTGTGC GCGCGTGC TTGCGAGTAT chr2L:13079602-13079722 57 1.59e-05 AAATCGTTGG GCGCGTGC TGCGCCCAGA chr2L:19037197-19037317 37 1.59e-05 AGGCGCTAGG GCGCGTGC CATTTTGTCT chr3L:18183396-18183516 58 1.59e-05 CTCGAGTTTG GCGCGTGC CAATTAAACG chr3R:27139721-27139841 40 1.59e-05 GACGCCTGTG GCGCGTGC CGCCTTCTTT chr3R:18121881-18122001 52 1.59e-05 CGACTCTGAG GCGCGTGC CGCCCGAGCA chr2R:6595903-6596023 47 1.59e-05 ACTAATTTGT GCGCGTGC CGACGGCTCA chrX:3002389-3002509 113 1.59e-05 CTCGTGTTAA GCGCGTGC chr3R:18244173-18244293 20 1.91e-05 TTTGCAAAAA GCGCGCGC TTAACCAATT chr3R:13964606-13964726 20 2.86e-05 CTTTGTACGC GCACGTGT TGCCAACAAA chr2L:12096401-12096521 58 2.86e-05 AATGCGAGCG GCACGTGT TGATATTCTT chr3L:17399518-17399638 64 2.86e-05 TACGCAATCG GCACGTGT CATGAATATT chr2R:13561110-13561230 51 2.86e-05 TGATCGTGGA GCACGTGT GTGTTGACAT chrX:9729109-9729229 37 2.86e-05 GGCACGAGGG GCACGTGT CCGTGTGCGT chr3L:7360496-7360616 79 3.52e-05 ATCGGTTCCA GCACGAGC CAAACAACCC chr2R:11950868-11950988 105 3.52e-05 GACAAGCCCA GCACGAGC TCAGCGAT chr2R:16848191-16848311 49 3.52e-05 TTTGTGAATG GCACGAGC TCAACATCAA chrX:17125269-17125389 57 4.18e-05 CCTCTCCCTC GCACGCGT GTCATTTGCG chr2L:10608760-10608880 49 4.18e-05 CGAAGCCTCA GCACGCGT CTCTCTCTCT chr2L:19869453-19869573 45 4.18e-05 TCGAGAAACG GCACGCGT TACTCGACAA chr2R:11494693-11494813 14 4.18e-05 AAAGATTCTA GCACGCGT GCAAGTAATT chr3R:14414919-14415039 27 4.18e-05 GCATGGCATG GCACGCGT TTTGAAAATT chr3R:27071306-27071426 30 4.18e-05 TTCCGTTGGC GCACGCGT CATGGGAGCC chr3R:6335093-6335213 65 4.18e-05 GATGCGAGTG GCACGCGT TCGAAATAAA chr3L:19016325-19016445 54 4.85e-05 CTGGGGCTCA GCGCGTGT CGGCTGGTTG chr3L:11293527-11293647 69 4.85e-05 GACAGCAGCA GCGCGTGT GCTGTGCCTG chr3R:16552435-16552555 49 4.85e-05 CCAGCTGAAG GCGCGTGT GTTTGTTTGT chrX:3099367-3099487 89 4.85e-05 GTTTTTGCAT GCGCGTGT GCCTCTGTTA chr3L:11419613-11419733 25 7.10e-05 GTGTTGCGCT GCTCGTGC TCTTAACGGG chr2L:9454489-9454609 36 7.10e-05 GAATCCTTCG CCACGTGC ACCGAGCCAT chr3L:92012-92132 17 7.10e-05 TGAAAAATGA ACACGTGC CGCTGATTAG chr3R:30474792-30474912 85 7.10e-05 ATTACTTTTG CCACGTGC GAGGGCAGCT chr3R:22583139-22583259 59 7.10e-05 AATGCAGTCA ACACGTGC CGTCGCGCGT chr2L:8857869-8857989 65 7.10e-05 GCCAGTCGGA ACACGTGC GGGTCATTAG chr2R:14031586-14031706 68 7.10e-05 gctGACAGCG GCTCGTGC CAGTACTCAA chr2R:13166907-13167027 90 7.10e-05 TTGGTTTTTG GCTCGTGC CCGGCCAGCG chr3R:28331037-28331157 91 7.10e-05 GAGTTCGGTA ACACGTGC CGTTCCAGCT chr3L:16820064-16820184 25 7.10e-05 ATTCTAGCTG CCACGTGC CGTGATTTTT chr3R:9027207-9027327 46 7.10e-05 TGTTGTCAGC CCACGTGC GTGTGTCAGA chr3L:8698043-8698163 76 7.10e-05 GTGCTGGGCA GCTCGTGC CGTCGAAATA chr2L:9728907-9729027 48 7.10e-05 TTAACAAGTG GCTCGTGC CCAGGTGAAC chr2L:19135116-19135236 22 1.05e-04 CTCCTCGCGC CCACGCGC CGCAGCGCTT chr3L:15999734-15999854 25 1.05e-04 AAAGTTAATG GCACGTGA TATAAATGGG chr3R:9932590-9932710 90 1.05e-04 CCATCGAGTG ACACGCGC TTCTCGCGTA chr3L:1098548-1098668 51 1.05e-04 GGAACGTGGA GCACGTGA ATGCTGTCAA chr3R:10284263-10284383 81 1.05e-04 AGGATTCGTC GCACGTGA GAGAAAAGAG chr3L:8693956-8694076 57 1.05e-04 ACTTTGAGCC ACACGCGC CGCGCTTTTG chr3L:3384461-3384581 69 1.23e-04 AGCCGCTGTA ACGCGTGC TAAACAAGTT chr2R:13563644-13563764 70 1.23e-04 ATGGATCGTG GCACGTGG TTCCCAAGAT chr3R:19091210-19091330 69 1.23e-04 GCCTACGTAG ACGCGTGC CAGGAGAATT chrX:9580312-9580432 47 1.28e-04 TAGTTTTATG GCACGGGC CTAATCCTAA chr2R:25170615-25170735 60 1.35e-04 TACACAGAGG GCACGCGA CACACACATG chr2L:14396437-14396557 8 1.35e-04 aaaaGCG GCACGCGA AGCTTTCGGC chr3L:16338030-16338150 111 1.35e-04 TAAGGTAGTG GCACGCGA AC chr3R:22039557-22039677 19 1.54e-04 GTGGGTCGCG GCGCGTGA CACAGAAAAT chr3L:17937501-17937621 113 1.77e-04 TTAATGCGCG GCACGAGT chr2R:22242131-22242251 62 1.77e-04 TCTCGCTCTG GCACGAGT CCATTGGAGT chr3L:11820008-11820128 54 1.77e-04 TGCACAGTCA GCACGAGT CGGCACAGTG chr3L:17653240-17653360 47 1.77e-04 AGAAATTTGA GCGCGTGG ACAGCTGCCA chr3R:9024957-9025077 11 1.77e-04 TTGATATGCG GCGCGTGG CACTGAAGAT chr2L:5898463-5898583 99 1.77e-04 CGACAGGTTG GCGCGTGG CAACATTTTC chr3R:13976299-13976419 42 1.77e-04 TGTCGTTTTA GCGCGTGG CTCAAAacat chr2R:25024155-25024275 55 1.77e-04 CTGCCCATTG TCACGTGC CCTCGTGCAG chr3R:26462338-26462458 55 2.18e-04 CCCGCCCCCC ACACGTGT TGTTTTGTTT chr3L:1083496-1083616 63 2.27e-04 tatatatCTG TCACGCGC TCATCTCTAA chr2L:17428037-17428157 36 2.41e-04 AGCTATATAG TCGCGTGC GACTTGCACA chrX:11622116-11622236 50 2.41e-04 gtgctttgcg tcgcgtgc ctgcgtgtac chr3R:18106334-18106454 6 2.41e-04 ACGAC TCGCGTGC CCTTTTGGCA chr2R:10551856-10551976 68 2.63e-04 CACGAGATCC ACACGAGC CAAAATCATG chr3R:26040020-26040140 29 2.63e-04 GGTTCCCACG CCACGAGC CACAAGGATT chr2L:3108251-3108371 105 2.63e-04 TCGAAGTTTG GCTCGAGC CATCAAAG chr3R:26010736-26010856 85 2.63e-04 CCTCTCTGTC GCTCGAGC GCACAGGAAA chr3R:26032167-26032287 15 2.86e-04 TTGTTCTCCG CCACGCGT TTGGCCCACC chr3L:7360700-7360820 21 3.02e-04 TCGCAGATCG CCGCGTGT CGATCGAGAA chr2L:19897106-19897226 80 3.02e-04 GGGTCTTACG ACGCGTGT CTCCAATTAA chr3R:26006086-26006206 23 3.29e-04 ACTCATTTTG CCTCGTGC GCGGCCTGCT chr3L:16025059-16025179 29 3.29e-04 GCCGAAAACG GCACGGGT TTAGCGCGCT chr3R:26008583-26008703 112 3.29e-04 TGGGAAACAA ACTCGTGC C chr2R:13565977-13566097 6 3.56e-04 TTCTC ACGCGAGC ACATGCCAAA chr3R:23460840-23460960 60 4.74e-04 AGCGATGCAA CCACGGGC TGTGCCTCAT chr2R:13534178-13534298 64 5.20e-04 TTGGAAAACG ACACGCGA CTGAATCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8670243-8670363 6.6e-06 106_[+1]_6 chr2R:5754520-5754640 6.6e-06 40_[+1]_72 chr2L:12003348-12003468 6.6e-06 53_[+1]_59 chr3R:8108974-8109094 6.6e-06 31_[+1]_81 chr3R:5279753-5279873 6.6e-06 26_[+1]_86 chrX:18243997-18244117 6.6e-06 87_[+1]_25 chr2R:6235883-6236003 6.6e-06 45_[+1]_67 chr3R:8277874-8277994 6.6e-06 58_[+1]_54 chr3R:16229060-16229180 6.6e-06 58_[+1]_54 chr2L:15425831-15425951 6.6e-06 47_[+1]_65 chr2R:13564677-13564797 6.6e-06 103_[+1]_9 chr3L:12090344-12090464 6.6e-06 61_[+1]_51 chrX:17252238-17252358 6.6e-06 74_[+1]_38 chr2R:12565699-12565819 6.6e-06 16_[+1]_96 chr3R:21349448-21349568 1.1e-05 103_[+1]_9 chr3L:2853079-2853199 1.1e-05 65_[+1]_47 chr2L:6701749-6701869 1.1e-05 66_[+1]_46 chr3L:17612395-17612515 1.1e-05 104_[+1]_8 chr2L:2415189-2415309 1.1e-05 31_[+1]_81 chr2R:6622210-6622330 1.1e-05 34_[+1]_78 chr3R:30160384-30160504 1.1e-05 12_[+1]_100 chrX:13322441-13322561 1.1e-05 20_[+1]_92 chr2R:19669103-19669223 1.1e-05 83_[+1]_29 chr3L:3845841-3845961 1.1e-05 16_[+1]_96 chr2R:21550027-21550147 1.1e-05 51_[+1]_61 chrX:12480370-12480490 1.1e-05 38_[+1]_74 chrX:1899510-1899630 1.6e-05 56_[+1]_56 chr2L:21789718-21789838 1.6e-05 3_[+1]_109 chrX:9155978-9156098 1.6e-05 70_[+1]_42 chrX:17302619-17302739 1.6e-05 89_[+1]_23 chr2L:13079602-13079722 1.6e-05 56_[+1]_56 chr2L:19037197-19037317 1.6e-05 36_[+1]_76 chr3L:18183396-18183516 1.6e-05 57_[+1]_55 chr3R:27139721-27139841 1.6e-05 39_[+1]_73 chr3R:18121881-18122001 1.6e-05 51_[+1]_61 chr2R:6595903-6596023 1.6e-05 46_[+1]_66 chrX:3002389-3002509 1.6e-05 112_[+1] chr3R:18244173-18244293 1.9e-05 19_[+1]_93 chr3R:13964606-13964726 2.9e-05 19_[+1]_93 chr2L:12096401-12096521 2.9e-05 57_[+1]_55 chr3L:17399518-17399638 2.9e-05 63_[+1]_49 chr2R:13561110-13561230 2.9e-05 50_[+1]_62 chrX:9729109-9729229 2.9e-05 36_[+1]_76 chr3L:7360496-7360616 3.5e-05 78_[+1]_34 chr2R:11950868-11950988 3.5e-05 104_[+1]_8 chr2R:16848191-16848311 3.5e-05 48_[+1]_64 chrX:17125269-17125389 4.2e-05 56_[+1]_56 chr2L:10608760-10608880 4.2e-05 48_[+1]_64 chr2L:19869453-19869573 4.2e-05 44_[+1]_68 chr2R:11494693-11494813 4.2e-05 13_[+1]_99 chr3R:14414919-14415039 4.2e-05 26_[+1]_86 chr3R:27071306-27071426 4.2e-05 29_[+1]_83 chr3R:6335093-6335213 4.2e-05 64_[+1]_48 chr3L:19016325-19016445 4.8e-05 53_[+1]_59 chr3L:11293527-11293647 4.8e-05 68_[+1]_44 chr3R:16552435-16552555 4.8e-05 48_[+1]_64 chrX:3099367-3099487 4.8e-05 88_[+1]_24 chr3L:11419613-11419733 7.1e-05 24_[+1]_88 chr2L:9454489-9454609 7.1e-05 35_[+1]_77 chr3L:92012-92132 7.1e-05 16_[+1]_96 chr3R:30474792-30474912 7.1e-05 84_[+1]_28 chr3R:22583139-22583259 7.1e-05 58_[+1]_54 chr2L:8857869-8857989 7.1e-05 64_[+1]_48 chr2R:14031586-14031706 7.1e-05 67_[+1]_45 chr2R:13166907-13167027 7.1e-05 89_[+1]_23 chr3R:28331037-28331157 7.1e-05 90_[+1]_22 chr3L:16820064-16820184 7.1e-05 24_[+1]_88 chr3R:9027207-9027327 7.1e-05 45_[+1]_67 chr3L:8698043-8698163 7.1e-05 75_[+1]_37 chr2L:9728907-9729027 7.1e-05 47_[+1]_65 chr2L:19135116-19135236 0.00011 21_[+1]_91 chr3L:15999734-15999854 0.00011 24_[+1]_88 chr3R:9932590-9932710 0.00011 89_[+1]_23 chr3L:1098548-1098668 0.00011 50_[+1]_62 chr3R:10284263-10284383 0.00011 80_[+1]_32 chr3L:8693956-8694076 0.00011 56_[+1]_56 chr3L:3384461-3384581 0.00012 68_[+1]_44 chr2R:13563644-13563764 0.00012 69_[+1]_43 chr3R:19091210-19091330 0.00012 68_[+1]_44 chrX:9580312-9580432 0.00013 46_[+1]_66 chr2R:25170615-25170735 0.00013 59_[+1]_53 chr2L:14396437-14396557 0.00013 7_[+1]_105 chr3L:16338030-16338150 0.00013 110_[+1]_2 chr3R:22039557-22039677 0.00015 18_[+1]_94 chr3L:17937501-17937621 0.00018 112_[+1] chr2R:22242131-22242251 0.00018 61_[+1]_51 chr3L:11820008-11820128 0.00018 53_[+1]_59 chr3L:17653240-17653360 0.00018 46_[+1]_66 chr3R:9024957-9025077 0.00018 10_[+1]_102 chr2L:5898463-5898583 0.00018 98_[+1]_14 chr3R:13976299-13976419 0.00018 41_[+1]_71 chr2R:25024155-25024275 0.00018 54_[+1]_58 chr3R:26462338-26462458 0.00022 54_[+1]_58 chr3L:1083496-1083616 0.00023 62_[+1]_50 chr2L:17428037-17428157 0.00024 35_[+1]_77 chrX:11622116-11622236 0.00024 49_[+1]_63 chr3R:18106334-18106454 0.00024 5_[+1]_107 chr2R:10551856-10551976 0.00026 67_[+1]_45 chr3R:26040020-26040140 0.00026 28_[+1]_84 chr2L:3108251-3108371 0.00026 104_[+1]_8 chr3R:26010736-26010856 0.00026 84_[+1]_28 chr3R:26032167-26032287 0.00029 14_[+1]_98 chr3L:7360700-7360820 0.0003 20_[+1]_92 chr2L:19897106-19897226 0.0003 79_[+1]_33 chr3R:26006086-26006206 0.00033 22_[+1]_90 chr3L:16025059-16025179 0.00033 28_[+1]_84 chr3R:26008583-26008703 0.00033 111_[+1]_1 chr2R:13565977-13566097 0.00036 5_[+1]_107 chr3R:23460840-23460960 0.00047 59_[+1]_53 chr2R:13534178-13534298 0.00052 63_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACGTGC width=8 seqs=110 chr2R:8670243-8670363 ( 107) GCACGTGC 1 chr2R:5754520-5754640 ( 41) GCACGTGC 1 chr2L:12003348-12003468 ( 54) GCACGTGC 1 chr3R:8108974-8109094 ( 32) GCACGTGC 1 chr3R:5279753-5279873 ( 27) GCACGTGC 1 chrX:18243997-18244117 ( 88) GCACGTGC 1 chr2R:6235883-6236003 ( 46) GCACGTGC 1 chr3R:8277874-8277994 ( 59) GCACGTGC 1 chr3R:16229060-16229180 ( 59) GCACGTGC 1 chr2L:15425831-15425951 ( 48) GCACGTGC 1 chr2R:13564677-13564797 ( 104) GCACGTGC 1 chr3L:12090344-12090464 ( 62) GCACGTGC 1 chrX:17252238-17252358 ( 75) GCACGTGC 1 chr2R:12565699-12565819 ( 17) GCACGTGC 1 chr3R:21349448-21349568 ( 104) GCACGCGC 1 chr3L:2853079-2853199 ( 66) GCACGCGC 1 chr2L:6701749-6701869 ( 67) GCACGCGC 1 chr3L:17612395-17612515 ( 105) GCACGCGC 1 chr2L:2415189-2415309 ( 32) GCACGCGC 1 chr2R:6622210-6622330 ( 35) GCACGCGC 1 chr3R:30160384-30160504 ( 13) GCACGCGC 1 chrX:13322441-13322561 ( 21) GCACGCGC 1 chr2R:19669103-19669223 ( 84) GCACGCGC 1 chr3L:3845841-3845961 ( 17) GCACGCGC 1 chr2R:21550027-21550147 ( 52) GCACGCGC 1 chrX:12480370-12480490 ( 39) GCACGCGC 1 chrX:1899510-1899630 ( 57) GCGCGTGC 1 chr2L:21789718-21789838 ( 4) GCGCGTGC 1 chrX:9155978-9156098 ( 71) GCGCGTGC 1 chrX:17302619-17302739 ( 90) GCGCGTGC 1 chr2L:13079602-13079722 ( 57) GCGCGTGC 1 chr2L:19037197-19037317 ( 37) GCGCGTGC 1 chr3L:18183396-18183516 ( 58) GCGCGTGC 1 chr3R:27139721-27139841 ( 40) GCGCGTGC 1 chr3R:18121881-18122001 ( 52) GCGCGTGC 1 chr2R:6595903-6596023 ( 47) GCGCGTGC 1 chrX:3002389-3002509 ( 113) GCGCGTGC 1 chr3R:18244173-18244293 ( 20) GCGCGCGC 1 chr3R:13964606-13964726 ( 20) GCACGTGT 1 chr2L:12096401-12096521 ( 58) GCACGTGT 1 chr3L:17399518-17399638 ( 64) GCACGTGT 1 chr2R:13561110-13561230 ( 51) GCACGTGT 1 chrX:9729109-9729229 ( 37) GCACGTGT 1 chr3L:7360496-7360616 ( 79) GCACGAGC 1 chr2R:11950868-11950988 ( 105) GCACGAGC 1 chr2R:16848191-16848311 ( 49) GCACGAGC 1 chrX:17125269-17125389 ( 57) GCACGCGT 1 chr2L:10608760-10608880 ( 49) GCACGCGT 1 chr2L:19869453-19869573 ( 45) GCACGCGT 1 chr2R:11494693-11494813 ( 14) GCACGCGT 1 chr3R:14414919-14415039 ( 27) GCACGCGT 1 chr3R:27071306-27071426 ( 30) GCACGCGT 1 chr3R:6335093-6335213 ( 65) GCACGCGT 1 chr3L:19016325-19016445 ( 54) GCGCGTGT 1 chr3L:11293527-11293647 ( 69) GCGCGTGT 1 chr3R:16552435-16552555 ( 49) GCGCGTGT 1 chrX:3099367-3099487 ( 89) GCGCGTGT 1 chr3L:11419613-11419733 ( 25) GCTCGTGC 1 chr2L:9454489-9454609 ( 36) CCACGTGC 1 chr3L:92012-92132 ( 17) ACACGTGC 1 chr3R:30474792-30474912 ( 85) CCACGTGC 1 chr3R:22583139-22583259 ( 59) ACACGTGC 1 chr2L:8857869-8857989 ( 65) ACACGTGC 1 chr2R:14031586-14031706 ( 68) GCTCGTGC 1 chr2R:13166907-13167027 ( 90) GCTCGTGC 1 chr3R:28331037-28331157 ( 91) ACACGTGC 1 chr3L:16820064-16820184 ( 25) CCACGTGC 1 chr3R:9027207-9027327 ( 46) CCACGTGC 1 chr3L:8698043-8698163 ( 76) GCTCGTGC 1 chr2L:9728907-9729027 ( 48) GCTCGTGC 1 chr2L:19135116-19135236 ( 22) CCACGCGC 1 chr3L:15999734-15999854 ( 25) GCACGTGA 1 chr3R:9932590-9932710 ( 90) ACACGCGC 1 chr3L:1098548-1098668 ( 51) GCACGTGA 1 chr3R:10284263-10284383 ( 81) GCACGTGA 1 chr3L:8693956-8694076 ( 57) ACACGCGC 1 chr3L:3384461-3384581 ( 69) ACGCGTGC 1 chr2R:13563644-13563764 ( 70) GCACGTGG 1 chr3R:19091210-19091330 ( 69) ACGCGTGC 1 chrX:9580312-9580432 ( 47) GCACGGGC 1 chr2R:25170615-25170735 ( 60) GCACGCGA 1 chr2L:14396437-14396557 ( 8) GCACGCGA 1 chr3L:16338030-16338150 ( 111) GCACGCGA 1 chr3R:22039557-22039677 ( 19) GCGCGTGA 1 chr3L:17937501-17937621 ( 113) GCACGAGT 1 chr2R:22242131-22242251 ( 62) GCACGAGT 1 chr3L:11820008-11820128 ( 54) GCACGAGT 1 chr3L:17653240-17653360 ( 47) GCGCGTGG 1 chr3R:9024957-9025077 ( 11) GCGCGTGG 1 chr2L:5898463-5898583 ( 99) GCGCGTGG 1 chr3R:13976299-13976419 ( 42) GCGCGTGG 1 chr2R:25024155-25024275 ( 55) TCACGTGC 1 chr3R:26462338-26462458 ( 55) ACACGTGT 1 chr3L:1083496-1083616 ( 63) TCACGCGC 1 chr2L:17428037-17428157 ( 36) TCGCGTGC 1 chrX:11622116-11622236 ( 50) TCGCGTGC 1 chr3R:18106334-18106454 ( 6) TCGCGTGC 1 chr2R:10551856-10551976 ( 68) ACACGAGC 1 chr3R:26040020-26040140 ( 29) CCACGAGC 1 chr2L:3108251-3108371 ( 105) GCTCGAGC 1 chr3R:26010736-26010856 ( 85) GCTCGAGC 1 chr3R:26032167-26032287 ( 15) CCACGCGT 1 chr3L:7360700-7360820 ( 21) CCGCGTGT 1 chr2L:19897106-19897226 ( 80) ACGCGTGT 1 chr3R:26006086-26006206 ( 23) CCTCGTGC 1 chr3L:16025059-16025179 ( 29) GCACGGGT 1 chr3R:26008583-26008703 ( 112) ACTCGTGC 1 chr2R:13565977-13566097 ( 6) ACGCGAGC 1 chr3R:23460840-23460960 ( 60) CCACGGGC 1 chr2R:13534178-13534298 ( 64) ACACGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.95669 E= 1.9e-079 -120 -117 183 -270 -1343 229 -1343 -1343 116 -1343 35 -185 -1343 229 -1343 -1343 -1343 -1343 227 -1343 -155 36 -292 105 -1343 -1343 227 -1343 -201 170 -219 -43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 1.9e-079 0.127273 0.090909 0.736364 0.045455 0.000000 1.000000 0.000000 0.000000 0.654545 0.000000 0.263636 0.081818 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.263636 0.027273 0.609091 0.000000 0.000000 1.000000 0.000000 0.072727 0.663636 0.045455 0.218182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGTGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[AG]CG[TC]G[CT] -------------------------------------------------------------------------------- Time 7.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTGCGC MEME-2 width = 8 sites = 6 llr = 74 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:::a:a probability G a:a:a:a: matrix T :::a:::: bits 2.3 *** **** 2.1 *** **** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17125269-17125389 97 4.67e-06 TTGCGGCCAC GCGTGCGC ATTTTCTCCT chr2R:10551856-10551976 4 4.67e-06 AAT GCGTGCGC TCTCCCTCCA chrX:11622116-11622236 78 4.67e-06 gtgtaagtgt gcgtgcgc ctgtgTTTGT chr2L:19452837-19452957 79 4.67e-06 GCAACGCTTG GCGTGCGC CGTCTGTTGC chr3R:18244173-18244293 50 4.67e-06 CATAAACGCT GCGTGCGC CAAAACGAGA chr2L:14699732-14699852 55 4.67e-06 TATGCCTGAG GCGTGCGC CAAGCGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17125269-17125389 4.7e-06 96_[+2]_16 chr2R:10551856-10551976 4.7e-06 3_[+2]_109 chrX:11622116-11622236 4.7e-06 77_[+2]_35 chr2L:19452837-19452957 4.7e-06 78_[+2]_34 chr3R:18244173-18244293 4.7e-06 49_[+2]_63 chr2L:14699732-14699852 4.7e-06 54_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTGCGC width=8 seqs=6 chrX:17125269-17125389 ( 97) GCGTGCGC 1 chr2R:10551856-10551976 ( 4) GCGTGCGC 1 chrX:11622116-11622236 ( 78) GCGTGCGC 1 chr2L:19452837-19452957 ( 79) GCGTGCGC 1 chr3R:18244173-18244293 ( 50) GCGTGCGC 1 chr2L:14699732-14699852 ( 55) GCGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 4.0e+002 -923 -923 227 -923 -923 229 -923 -923 -923 -923 227 -923 -923 -923 -923 176 -923 -923 227 -923 -923 229 -923 -923 -923 -923 227 -923 -923 229 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGCGC MEME-2 regular expression -------------------------------------------------------------------------------- GCGTGCGC -------------------------------------------------------------------------------- Time 13.33 secs. ******************************************************************************** ******************************************************************************** MOTIF CHGCYGCM MEME-3 width = 8 sites = 34 llr = 295 E-value = 6.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::::4 pos.-specific C a4:a43a5 probability G ::a::7:: matrix T :3::6::1 bits 2.3 * ** * 2.1 * ** * 1.8 * ** * 1.6 * ** * Relative 1.4 * ** ** Entropy 1.1 * ** ** (12.5 bits) 0.9 * ***** 0.7 * ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCTGCC consensus A CC A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8857869-8857989 50 4.58e-06 AGAACTGGTA CCGCTGCC AGTCGGAACA chr2R:14031586-14031706 10 4.58e-06 ctgctgctg ccgctgcC Agcgtcgctc chr3R:22583139-22583259 84 7.76e-06 CGTTGTGTGA CCGCCGCC AGAGCGCCAA chr3L:17653240-17653360 56 2.09e-05 AGCGCGTGGA CAGCTGCC AAGCAGCAGG chr2R:25198573-25198693 73 2.09e-05 TTTTTAGAAA CAGCTGCC ATGCGACTGG chr3R:26032372-26032492 93 2.09e-05 AAATTGCAAA CAGCTGCC ACTCGAACCG chr3L:17591036-17591156 59 2.09e-05 gttgctgctg ctgctgcc gctgctTTTG chr2L:15425831-15425951 93 2.09e-05 CGATCGCCAC CAGCTGCC TCTCTGGTTC chr3R:14414919-14415039 72 2.09e-05 AGCCAGTCGG CTGCTGCC TTTTTGAGGT chr2R:25024155-25024275 101 3.00e-05 GGCTCACCAA CAGCCGCC GGTAGCCGGT chr3R:8277874-8277994 13 3.65e-05 CTCTCTGAGA CCGCTGCA ACTCACCACC chr3R:18121881-18122001 8 4.11e-05 GATTTCC CCGCCGCA GAGAGCGAGT chrX:17302619-17302739 71 5.99e-05 TTAAAACCAG CTGCTGCA TCTGTGTGTG chr3R:21349448-21349568 29 5.99e-05 GCTGATGCTT CTGCTGCA ATACACACCA chr2L:20821415-20821535 2 5.99e-05 A CTGCTGCA ACACAAAAAC chr2L:13512891-13513011 84 5.99e-05 CATGCAGCTG CTGCTGCA GCTGCGACGC chr3L:12090344-12090464 98 5.99e-05 TGGAAATTTA CTGCTGCA GCTTGTTACC chr2R:14186561-14186681 55 7.74e-05 acaccagcgg cagccgca gcagcaATTT chr3L:19016325-19016445 18 7.74e-05 ACCCGATTTC CCGCTCCC TTTTGGCTTT chr3R:9932590-9932710 36 7.74e-05 TTGCACGGAA CCGCTCCC AAAGCCCCCG chr3R:26034961-26035081 23 7.74e-05 CACACACTTC CTGCCGCA GCCAGCGTTC chr2R:12565699-12565819 26 7.74e-05 AGCACGTGCC CAGCCGCA CACGCCTGCC chr2R:9494555-9494675 25 8.06e-05 atggacAGCC CCGCCCCC TGATATCCAT chr3R:26462338-26462458 46 8.06e-05 GCACCACCCC CCGCCCCC CACACGTGTT chr3R:9027207-9027327 14 8.06e-05 ACGTGCTGCC CCGCCCCC TGCGCCGTGC chr2R:8670243-8670363 47 1.14e-04 GGCTTTGCCA CTGCCCCC AACTCTTGCG chr3L:7360496-7360616 52 1.20e-04 CGAACCGGCT CCGCTCCA GCTACGCCTA chr3R:10284263-10284383 34 1.20e-04 ACACATAATG CCGCTCCA TTATGGCACG chr3R:26006086-26006206 36 1.44e-04 CGTGCGCGGC CTGCTGCT GTTGCCAGCG chr3R:13976299-13976419 109 1.44e-04 CACCTTTTAC CAGCTGCT TTTG chr2R:6595903-6596023 28 1.44e-04 TCTTTCATAT CTGCTGCT CACTAATTTG chr2L:3108251-3108371 28 1.57e-04 TCTTAGCGAG CAGCCGCT TGGTGGTCGA chr3L:3384461-3384581 58 1.57e-04 GAAAAACAGG CAGCCGCT GTAACGCGTG chr3L:8698043-8698163 42 1.88e-04 AGACGAGCCA CAGCCCCA ATTGAGCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8857869-8857989 4.6e-06 49_[+3]_63 chr2R:14031586-14031706 4.6e-06 9_[+3]_103 chr3R:22583139-22583259 7.8e-06 83_[+3]_29 chr3L:17653240-17653360 2.1e-05 55_[+3]_57 chr2R:25198573-25198693 2.1e-05 72_[+3]_40 chr3R:26032372-26032492 2.1e-05 92_[+3]_20 chr3L:17591036-17591156 2.1e-05 58_[+3]_54 chr2L:15425831-15425951 2.1e-05 92_[+3]_20 chr3R:14414919-14415039 2.1e-05 71_[+3]_41 chr2R:25024155-25024275 3e-05 100_[+3]_12 chr3R:8277874-8277994 3.7e-05 12_[+3]_100 chr3R:18121881-18122001 4.1e-05 7_[+3]_105 chrX:17302619-17302739 6e-05 70_[+3]_42 chr3R:21349448-21349568 6e-05 28_[+3]_84 chr2L:20821415-20821535 6e-05 1_[+3]_111 chr2L:13512891-13513011 6e-05 83_[+3]_29 chr3L:12090344-12090464 6e-05 97_[+3]_15 chr2R:14186561-14186681 7.7e-05 54_[+3]_58 chr3L:19016325-19016445 7.7e-05 17_[+3]_95 chr3R:9932590-9932710 7.7e-05 35_[+3]_77 chr3R:26034961-26035081 7.7e-05 22_[+3]_90 chr2R:12565699-12565819 7.7e-05 25_[+3]_87 chr2R:9494555-9494675 8.1e-05 24_[+3]_88 chr3R:26462338-26462458 8.1e-05 45_[+3]_67 chr3R:9027207-9027327 8.1e-05 13_[+3]_99 chr2R:8670243-8670363 0.00011 46_[+3]_66 chr3L:7360496-7360616 0.00012 51_[+3]_61 chr3R:10284263-10284383 0.00012 33_[+3]_79 chr3R:26006086-26006206 0.00014 35_[+3]_77 chr3R:13976299-13976419 0.00014 108_[+3]_4 chr2R:6595903-6596023 0.00014 27_[+3]_85 chr2L:3108251-3108371 0.00016 27_[+3]_85 chr3L:3384461-3384581 0.00016 57_[+3]_55 chr3L:8698043-8698163 0.00019 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHGCYGCM width=8 seqs=34 chr2L:8857869-8857989 ( 50) CCGCTGCC 1 chr2R:14031586-14031706 ( 10) CCGCTGCC 1 chr3R:22583139-22583259 ( 84) CCGCCGCC 1 chr3L:17653240-17653360 ( 56) CAGCTGCC 1 chr2R:25198573-25198693 ( 73) CAGCTGCC 1 chr3R:26032372-26032492 ( 93) CAGCTGCC 1 chr3L:17591036-17591156 ( 59) CTGCTGCC 1 chr2L:15425831-15425951 ( 93) CAGCTGCC 1 chr3R:14414919-14415039 ( 72) CTGCTGCC 1 chr2R:25024155-25024275 ( 101) CAGCCGCC 1 chr3R:8277874-8277994 ( 13) CCGCTGCA 1 chr3R:18121881-18122001 ( 8) CCGCCGCA 1 chrX:17302619-17302739 ( 71) CTGCTGCA 1 chr3R:21349448-21349568 ( 29) CTGCTGCA 1 chr2L:20821415-20821535 ( 2) CTGCTGCA 1 chr2L:13512891-13513011 ( 84) CTGCTGCA 1 chr3L:12090344-12090464 ( 98) CTGCTGCA 1 chr2R:14186561-14186681 ( 55) CAGCCGCA 1 chr3L:19016325-19016445 ( 18) CCGCTCCC 1 chr3R:9932590-9932710 ( 36) CCGCTCCC 1 chr3R:26034961-26035081 ( 23) CTGCCGCA 1 chr2R:12565699-12565819 ( 26) CAGCCGCA 1 chr2R:9494555-9494675 ( 25) CCGCCCCC 1 chr3R:26462338-26462458 ( 46) CCGCCCCC 1 chr3R:9027207-9027327 ( 14) CCGCCCCC 1 chr2R:8670243-8670363 ( 47) CTGCCCCC 1 chr3L:7360496-7360616 ( 52) CCGCTCCA 1 chr3R:10284263-10284383 ( 34) CCGCTCCA 1 chr3R:26006086-26006206 ( 36) CTGCTGCT 1 chr3R:13976299-13976419 ( 109) CAGCTGCT 1 chr2R:6595903-6596023 ( 28) CTGCTGCT 1 chr2L:3108251-3108371 ( 28) CAGCCGCT 1 chr3L:3384461-3384581 ( 58) CAGCCGCT 1 chr3L:8698043-8698163 ( 42) CAGCCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0628 E= 6.6e+000 -1173 229 -1173 -1173 14 78 -1173 13 -1173 -1173 227 -1173 -1173 229 -1173 -1173 -1173 90 -1173 107 -1173 37 183 -1173 -1173 229 -1173 -1173 38 120 -1173 -100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 6.6e+000 0.000000 1.000000 0.000000 0.000000 0.323529 0.352941 0.000000 0.323529 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.382353 0.000000 0.617647 0.000000 0.264706 0.735294 0.000000 0.000000 1.000000 0.000000 0.000000 0.382353 0.470588 0.000000 0.147059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCYGCM MEME-3 regular expression -------------------------------------------------------------------------------- C[CAT]GC[TC][GC]C[CA] -------------------------------------------------------------------------------- Time 19.38 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGCCCCC MEME-4 width = 8 sites = 9 llr = 98 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a91::::: pos.-specific C :1:aaaaa probability G ::8::::: matrix T ::1::::: bits 2.3 ***** 2.1 ***** 1.8 * ***** 1.6 * ***** Relative 1.4 ** ***** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9932590-9932710 45 6.43e-06 ACCGCTCCCA AAGCCCCC GGGCACGCCC chr3L:3384461-3384581 35 6.43e-06 AACAGTTTGA AAGCCCCC GCTCTGAAAA chr2R:12916701-12916821 59 6.43e-06 TTTGCTCTTG AAGCCCCC GAAAAACTAG chr2R:11494693-11494813 32 6.43e-06 GCAAGTAATT AAGCCCCC AAAGATGAGA chrX:13322441-13322561 31 6.43e-06 GCACGCGCCA AAGCCCCC AAagaagcga chr3R:26008583-26008703 32 6.43e-06 CCCCACTTGA AAGCCCCC CGCAAACCCA chr3R:26462338-26462458 5 1.09e-05 TCCC ACGCCCCC TCAGCACGCC chr2R:16848191-16848311 108 2.00e-05 GACGCGCCAG AAACCCCC AAAAC chr2R:21550027-21550147 19 2.92e-05 GCCCCCTGTA AATCCCCC ATTTTGGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9932590-9932710 6.4e-06 44_[+4]_68 chr3L:3384461-3384581 6.4e-06 34_[+4]_78 chr2R:12916701-12916821 6.4e-06 58_[+4]_54 chr2R:11494693-11494813 6.4e-06 31_[+4]_81 chrX:13322441-13322561 6.4e-06 30_[+4]_82 chr3R:26008583-26008703 6.4e-06 31_[+4]_81 chr3R:26462338-26462458 1.1e-05 4_[+4]_108 chr2R:16848191-16848311 2e-05 107_[+4]_5 chr2R:21550027-21550147 2.9e-05 18_[+4]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGCCCCC width=8 seqs=9 chr3R:9932590-9932710 ( 45) AAGCCCCC 1 chr3L:3384461-3384581 ( 35) AAGCCCCC 1 chr2R:12916701-12916821 ( 59) AAGCCCCC 1 chr2R:11494693-11494813 ( 32) AAGCCCCC 1 chrX:13322441-13322561 ( 31) AAGCCCCC 1 chr3R:26008583-26008703 ( 32) AAGCCCCC 1 chr3R:26462338-26462458 ( 5) ACGCCCCC 1 chr2R:16848191-16848311 ( 108) AAACCCCC 1 chr2R:21550027-21550147 ( 19) AATCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 2.8e+003 177 -982 -982 -982 160 -88 -982 -982 -140 -982 191 -141 -982 229 -982 -982 -982 229 -982 -982 -982 229 -982 -982 -982 229 -982 -982 -982 229 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.8e+003 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.111111 0.000000 0.777778 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- AAGCCCCC -------------------------------------------------------------------------------- Time 25.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCRGCAG MEME-5 width = 8 sites = 23 llr = 208 E-value = 6.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::6::6: pos.-specific C :1a1:a:2 probability G 99:3a:28 matrix T ::::::2: bits 2.3 * ** 2.1 * ** 1.8 ** ** 1.6 *** ** * Relative 1.4 *** ** * Entropy 1.1 *** ** * (13.1 bits) 0.9 *** ** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCAG consensus G TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9580312-9580432 76 6.62e-06 CTAAATCGCT GGCAGCAG ACCCACGGTT chr2L:13079602-13079722 14 6.62e-06 TGAAACGGCA GGCAGCAG ACGGCGACTG chr2R:11950868-11950988 46 6.62e-06 GGCATTAAGC GGCAGCAG CACTATGGCT chr3L:16025059-16025179 68 6.62e-06 GCGATCAGCG GGCAGCAG CGGTAAAGGC chr2R:6235883-6236003 84 1.13e-05 TCTGAGCTTC GGCGGCAG CATCTCATCC chr2R:17639247-17639367 1 2.60e-05 . GGCAGCTG TTGTCGTTTA chr3R:30474792-30474912 96 2.60e-05 CACGTGCGAG GGCAGCTG TTGCACGCAC chr3R:16948696-16948816 87 2.60e-05 CAAGAGTAAT GGCGGCGG CATGGCGCCG chr3R:9024957-9025077 56 2.60e-05 AGCGGCATGT GGCAGCTG TCCTTTTTCC chr3R:25999440-25999560 35 2.60e-05 ATCTAGAAAC GGCAGCTG TTCGCTCTGC chr3R:26020648-26020768 3 3.07e-05 TT GGCGGCTG ACAGTCAACC chr3L:16338030-16338150 49 3.72e-05 ACTCCGGCCG GGCAGCAC TGACCATACA chr3L:17591036-17591156 108 4.19e-05 AGATGCGACG GGCGGCAC ACGCT chr3L:17612395-17612515 64 4.19e-05 TTACAGTTGG GGCGGCAC TGGGCTATCA chrX:9729109-9729229 3 4.65e-05 AG GGCCGCAG GACTGTCGAA chr2L:5898463-5898583 82 5.11e-05 GTAATTAATG GGCAGCGC GACAGGTTGG chr3L:17653240-17653360 65 7.04e-05 ACAGCTGCCA AGCAGCAG GTGTGCGCAA chr2L:20821415-20821535 22 7.04e-05 ACAAAAACCA AGCAGCAG AGACATGTAA chr3R:19091210-19091330 33 7.04e-05 catcatcatc agcagcag catcatcGTG chr3L:3845841-3845961 47 7.04e-05 TTGGTGCACA GGCGGCGC GGACTGGGAA chrX:1899510-1899630 112 9.61e-05 gaaagtaaag ggCCGCGG C chr2L:9454489-9454609 107 9.61e-05 AACAACAACT GCCGGCAG GGGCTG chr3L:1818962-1819082 50 9.61e-05 AAGTGACACT GCCGGCAG GGCGTCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9580312-9580432 6.6e-06 75_[+5]_37 chr2L:13079602-13079722 6.6e-06 13_[+5]_99 chr2R:11950868-11950988 6.6e-06 45_[+5]_67 chr3L:16025059-16025179 6.6e-06 67_[+5]_45 chr2R:6235883-6236003 1.1e-05 83_[+5]_29 chr2R:17639247-17639367 2.6e-05 [+5]_112 chr3R:30474792-30474912 2.6e-05 95_[+5]_17 chr3R:16948696-16948816 2.6e-05 86_[+5]_26 chr3R:9024957-9025077 2.6e-05 55_[+5]_57 chr3R:25999440-25999560 2.6e-05 34_[+5]_78 chr3R:26020648-26020768 3.1e-05 2_[+5]_110 chr3L:16338030-16338150 3.7e-05 48_[+5]_64 chr3L:17591036-17591156 4.2e-05 107_[+5]_5 chr3L:17612395-17612515 4.2e-05 63_[+5]_49 chrX:9729109-9729229 4.7e-05 2_[+5]_110 chr2L:5898463-5898583 5.1e-05 81_[+5]_31 chr3L:17653240-17653360 7e-05 64_[+5]_48 chr2L:20821415-20821535 7e-05 21_[+5]_91 chr3R:19091210-19091330 7e-05 32_[+5]_80 chr3L:3845841-3845961 7e-05 46_[+5]_66 chrX:1899510-1899630 9.6e-05 111_[+5]_1 chr2L:9454489-9454609 9.6e-05 106_[+5]_6 chr3L:1818962-1819082 9.6e-05 49_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCRGCAG width=8 seqs=23 chrX:9580312-9580432 ( 76) GGCAGCAG 1 chr2L:13079602-13079722 ( 14) GGCAGCAG 1 chr2R:11950868-11950988 ( 46) GGCAGCAG 1 chr3L:16025059-16025179 ( 68) GGCAGCAG 1 chr2R:6235883-6236003 ( 84) GGCGGCAG 1 chr2R:17639247-17639367 ( 1) GGCAGCTG 1 chr3R:30474792-30474912 ( 96) GGCAGCTG 1 chr3R:16948696-16948816 ( 87) GGCGGCGG 1 chr3R:9024957-9025077 ( 56) GGCAGCTG 1 chr3R:25999440-25999560 ( 35) GGCAGCTG 1 chr3R:26020648-26020768 ( 3) GGCGGCTG 1 chr3L:16338030-16338150 ( 49) GGCAGCAC 1 chr3L:17591036-17591156 ( 108) GGCGGCAC 1 chr3L:17612395-17612515 ( 64) GGCGGCAC 1 chrX:9729109-9729229 ( 3) GGCCGCAG 1 chr2L:5898463-5898583 ( 82) GGCAGCGC 1 chr3L:17653240-17653360 ( 65) AGCAGCAG 1 chr2L:20821415-20821535 ( 22) AGCAGCAG 1 chr3R:19091210-19091330 ( 33) AGCAGCAG 1 chr3L:3845841-3845961 ( 47) GGCGGCGC 1 chrX:1899510-1899630 ( 112) GGCCGCGG 1 chr2L:9454489-9454609 ( 107) GCCGGCAG 1 chr3L:1818962-1819082 ( 50) GCCGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 6.6e+003 -117 -1117 207 -1117 -1117 -124 214 -1117 -1117 229 -1117 -1117 95 -124 75 -1117 -1117 -1117 227 -1117 -1117 229 -1117 -1117 105 -1117 -25 -44 -1117 9 192 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.6e+003 0.130435 0.000000 0.869565 0.000000 0.000000 0.086957 0.913043 0.000000 0.000000 1.000000 0.000000 0.000000 0.565217 0.086957 0.347826 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.608696 0.000000 0.173913 0.217391 0.000000 0.217391 0.782609 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGCAG MEME-5 regular expression -------------------------------------------------------------------------------- GGC[AG]GC[AT][GC] -------------------------------------------------------------------------------- Time 31.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6553459-6553579 4.64e-01 120 chr3R:6335093-6335213 1.40e-02 64_[+1(4.18e-05)]_48 chr2R:25024155-25024275 2.92e-04 100_[+3(3.00e-05)]_12 chr2L:9728907-9729027 1.97e-02 47_[+1(7.10e-05)]_65 chr3L:2551390-2551510 2.56e-01 120 chrX:3002389-3002509 8.21e-03 112_[+1(1.59e-05)] chr2L:6553668-6553788 1.03e-01 120 chrX:12480370-12480490 1.24e-03 38_[+1(1.12e-05)]_74 chr3R:27071306-27071426 2.07e-04 29_[+1(4.18e-05)]_83 chr2R:21614499-21614619 2.82e-01 120 chr2R:12565699-12565819 7.75e-05 16_[+1(6.60e-06)]_1_[+3(7.74e-05)]_\ 87 chrX:17252238-17252358 6.29e-03 74_[+1(6.60e-06)]_38 chr2L:11034496-11034616 1.47e-01 120 chr2R:21550027-21550147 1.10e-05 18_[+4(2.92e-05)]_25_[+1(1.12e-05)]_\ 61 chr3L:12090344-12090464 1.79e-04 61_[+1(6.60e-06)]_28_[+3(5.99e-05)]_\ 15 chr3R:25999177-25999297 1.96e-01 120 chr3L:3845841-3845961 9.09e-05 16_[+1(1.12e-05)]_22_[+5(7.04e-05)]_\ 66 chr3R:14414919-14415039 3.84e-04 26_[+1(4.18e-05)]_37_[+3(2.09e-05)]_\ 41 chr3R:19091210-19091330 1.69e-03 32_[+5(7.04e-05)]_80 chr2L:6198980-6199100 6.72e-01 120 chr3R:26008583-26008703 1.21e-03 5_[+4(6.43e-06)]_18_[+4(6.43e-06)]_\ 81 chr3R:26009894-26010014 9.53e-02 120 chr2R:13563644-13563764 1.76e-01 120 chr2R:13564677-13564797 2.82e-02 103_[+1(6.60e-06)]_9 chr3R:26002860-26002980 1.59e-01 120 chr2R:6595903-6596023 1.44e-04 5_[+1(3.52e-05)]_33_[+1(1.59e-05)]_\ 66 chr3L:8698043-8698163 1.23e-04 61_[+1(7.10e-05)]_2_[+5(7.04e-05)]_\ 41 chr2L:15425831-15425951 8.04e-06 47_[+1(6.60e-06)]_37_[+3(2.09e-05)]_\ 20 chr3R:15117843-15117963 1.00e+00 120 chr2R:12547697-12547817 9.99e-01 120 chr3R:21777815-21777935 9.99e-01 120 chr3R:26002653-26002773 1.01e-01 120 chrX:12480574-12480694 9.93e-01 120 chr2R:19669103-19669223 1.37e-03 83_[+1(1.12e-05)]_29 chr2R:16848191-16848311 3.06e-03 48_[+1(3.52e-05)]_51_[+4(2.00e-05)]_\ 5 chrX:3099367-3099487 5.61e-03 88_[+1(4.85e-05)]_24 chr3R:16229060-16229180 1.14e-03 58_[+1(6.60e-06)]_54 chrX:13322441-13322561 1.62e-05 20_[+1(1.12e-05)]_2_[+4(6.43e-06)]_\ 82 chrX:9729109-9729229 3.08e-04 2_[+5(4.65e-05)]_26_[+1(2.86e-05)]_\ 76 chr3R:8277874-8277994 7.29e-06 12_[+3(3.65e-05)]_38_[+1(6.60e-06)]_\ 54 chr2R:11494693-11494813 3.28e-04 13_[+1(4.18e-05)]_10_[+4(6.43e-06)]_\ 81 chr2R:6235883-6236003 2.67e-04 45_[+1(6.60e-06)]_9_[+5(4.19e-05)]_\ 13_[+5(1.13e-05)]_29 chrX:5988463-5988583 8.74e-01 120 chrX:18243997-18244117 4.88e-03 87_[+1(6.60e-06)]_25 chr3R:26034961-26035081 5.44e-02 22_[+3(7.74e-05)]_90 chr3L:3266456-3266576 2.04e-01 120 chr3R:26032167-26032287 1.04e-02 120 chr3R:14486620-14486740 9.29e-01 120 chr3L:8693956-8694076 2.06e-02 120 chr3R:5279753-5279873 1.60e-02 26_[+1(6.60e-06)]_86 chr3R:18121881-18122001 2.26e-05 7_[+3(4.11e-05)]_36_[+1(1.59e-05)]_\ 61 chr3R:27139721-27139841 5.50e-04 39_[+1(1.59e-05)]_73 chr2R:21550234-21550354 1.93e-01 120 chr2L:14422456-14422576 3.67e-02 120 chr3R:9027207-9027327 4.84e-04 13_[+3(8.06e-05)]_24_[+1(7.10e-05)]_\ 67 chr3L:16025059-16025179 4.09e-04 67_[+5(6.62e-06)]_45 chr3L:16820064-16820184 1.19e-01 24_[+1(7.10e-05)]_88 chr3R:26030711-26030831 6.25e-02 120 chr3R:18106334-18106454 2.75e-02 120 chr3R:8108974-8109094 4.29e-02 31_[+1(6.60e-06)]_81 chr3R:26013552-26013672 1.80e-02 120 chr2R:12392798-12392918 1.16e-01 120 chr3R:9891026-9891146 1.00e+00 120 chr2L:14699732-14699852 2.88e-02 54_[+2(4.67e-06)]_58 chrX:487550-487670 3.53e-01 120 chr3R:8924091-8924211 1.99e-01 120 chr3R:30160384-30160504 3.80e-03 12_[+1(1.12e-05)]_100 chr2R:11950868-11950988 1.08e-04 45_[+5(6.62e-06)]_51_[+1(3.52e-05)]_\ 8 chr3R:12477366-12477486 5.64e-01 120 chr3L:16338030-16338150 5.17e-03 48_[+5(3.72e-05)]_64 chr3R:13976299-13976419 4.92e-03 120 chr3R:18244173-18244293 4.50e-05 19_[+2(1.58e-05)]_22_[+2(4.67e-06)]_\ 63 chr3R:25999440-25999560 1.62e-02 34_[+5(2.60e-05)]_78 chr3R:16552435-16552555 3.34e-03 48_[+1(4.85e-05)]_64 chr2L:15416511-15416631 1.00e+00 120 chr2L:13512891-13513011 1.15e-03 83_[+3(5.99e-05)]_29 chr2L:18562972-18563092 7.29e-01 120 chr2R:13561110-13561230 8.05e-03 50_[+1(2.86e-05)]_62 chr2R:6622210-6622330 4.27e-04 34_[+1(1.12e-05)]_78 chr3L:17399518-17399638 6.27e-02 63_[+1(2.86e-05)]_49 chr3R:28331037-28331157 4.26e-02 90_[+1(7.10e-05)]_22 chr3R:5247173-5247293 7.84e-01 120 chr2L:5898463-5898583 2.18e-02 81_[+5(5.11e-05)]_31 chr3R:30718665-30718785 9.15e-01 120 chr3L:18183396-18183516 4.50e-03 57_[+1(1.59e-05)]_55 chr2R:14807681-14807801 9.21e-01 120 chr2L:16519705-16519825 9.59e-01 120 chr2L:19869453-19869573 4.40e-02 44_[+1(4.18e-05)]_68 chr2L:2415189-2415309 5.21e-03 31_[+1(1.12e-05)]_81 chr3L:17612395-17612515 3.52e-04 45_[+1(2.86e-05)]_10_[+5(4.19e-05)]_\ 33_[+1(1.12e-05)]_8 chr3L:11272783-11272903 9.83e-01 120 chr3R:9024957-9025077 3.85e-03 55_[+5(2.60e-05)]_57 chr2L:14396437-14396557 1.81e-02 120 chr2L:20821415-20821535 3.48e-03 1_[+3(5.99e-05)]_12_[+5(7.04e-05)]_\ 91 chr3R:26010736-26010856 8.56e-03 120 chr3R:10284263-10284383 1.39e-02 120 chr3L:17591036-17591156 1.82e-03 58_[+3(2.09e-05)]_41_[+5(4.19e-05)]_\ 5 chr3R:16948696-16948816 2.73e-02 86_[+5(2.60e-05)]_26 chr3R:12562168-12562288 1.00e+00 120 chr2R:13166907-13167027 4.16e-02 89_[+1(7.10e-05)]_23 chr3R:26032372-26032492 1.81e-02 92_[+3(2.09e-05)]_20 chr2L:7875857-7875977 9.94e-01 120 chr2L:19037197-19037317 5.58e-03 36_[+1(1.59e-05)]_76 chr3R:14001581-14001701 9.98e-01 120 chr3L:4461809-4461929 9.89e-01 120 chr3R:26014415-26014535 9.83e-01 120 chr3R:24798768-24798888 9.97e-01 120 chr2L:19897106-19897226 1.30e-01 120 chrX:4457805-4457925 9.97e-01 120 chr2R:14031586-14031706 1.34e-04 9_[+3(4.58e-06)]_50_[+1(7.10e-05)]_\ 45 chr3L:1098548-1098668 7.71e-02 120 chr2L:6701749-6701869 2.49e-03 66_[+1(1.12e-05)]_46 chr2L:8857869-8857989 7.71e-04 49_[+3(4.58e-06)]_7_[+1(7.10e-05)]_\ 48 chr2L:7254904-7255024 3.28e-01 120 chr2R:25170615-25170735 1.58e-01 120 chr3L:2853079-2853199 1.62e-03 65_[+1(1.12e-05)]_47 chr2R:25198573-25198693 1.77e-02 72_[+3(2.09e-05)]_40 chr2L:10608760-10608880 1.29e-02 48_[+1(4.18e-05)]_64 chr3L:11293527-11293647 9.04e-05 68_[+1(4.85e-05)]_44 chr2R:12565900-12566020 1.00e+00 120 chr2L:13079602-13079722 3.74e-05 13_[+5(6.62e-06)]_35_[+1(1.59e-05)]_\ 56 chr3R:22583139-22583259 6.32e-04 58_[+1(7.10e-05)]_17_[+3(7.76e-06)]_\ 29 chr3L:1083496-1083616 2.66e-01 120 chr2R:9078150-9078270 1.00e+00 120 chr3R:21349448-21349568 3.27e-05 28_[+3(5.99e-05)]_67_[+1(1.12e-05)]_\ 9 chr2L:19321030-19321150 7.21e-01 120 chr3R:8682167-8682287 7.00e-01 120 chr3R:21420030-21420150 9.97e-01 120 chr2L:12096401-12096521 1.90e-03 57_[+1(2.86e-05)]_55 chr3L:4445961-4446081 9.98e-01 120 chr2L:18953988-18954108 9.54e-01 120 chr2R:13570827-13570947 2.08e-01 120 chr3R:17605182-17605302 9.90e-01 120 chr2R:12916701-12916821 1.72e-02 58_[+4(6.43e-06)]_54 chr2R:13534178-13534298 1.15e-03 120 chr2L:12003348-12003468 1.57e-04 53_[+1(6.60e-06)]_59 chr2L:19452837-19452957 2.91e-03 78_[+2(4.67e-06)]_34 chr2R:13565977-13566097 1.75e-02 120 chr3R:30474792-30474912 2.66e-04 84_[+1(7.10e-05)]_3_[+5(2.60e-05)]_\ 17 chr3L:5653710-5653830 1.79e-02 120 chrX:17302619-17302739 2.03e-06 70_[+3(5.99e-05)]_11_[+1(1.59e-05)]_\ 23 chr2R:5754520-5754640 1.32e-03 40_[+1(6.60e-06)]_72 chr2L:7624303-7624423 1.00e+00 120 chr3L:9505487-9505607 1.00e+00 120 chr3L:3384461-3384581 9.72e-06 34_[+4(6.43e-06)]_78 chrX:458006-458126 7.75e-01 120 chr3L:92012-92132 9.29e-02 16_[+1(7.10e-05)]_96 chr3R:10688962-10689082 1.00e+00 120 chr3L:1818962-1819082 4.47e-02 49_[+5(9.61e-05)]_63 chrX:8444998-8445118 1.00e+00 120 chr3R:23460840-23460960 3.27e-01 120 chr3R:22886892-22887012 1.00e+00 120 chr2L:3108251-3108371 2.08e-02 120 chrX:16930704-16930824 5.67e-01 120 chr3L:11285283-11285403 1.00e+00 120 chr3R:9932590-9932710 8.43e-05 35_[+3(7.74e-05)]_1_[+4(6.43e-06)]_\ 68 chr3R:9237941-9238061 1.00e+00 120 chr3R:26040020-26040140 1.23e-02 120 chr2R:17639247-17639367 1.47e-01 [+5(2.60e-05)]_112 chr3R:22039557-22039677 1.04e-01 120 chr2L:15333676-15333796 2.24e-01 120 chr2L:3569894-3570014 9.13e-01 120 chr3R:25754998-25755118 9.99e-01 120 chr3L:19016325-19016445 1.52e-03 17_[+3(7.74e-05)]_28_[+1(4.85e-05)]_\ 59 chr2R:22661390-22661510 9.06e-01 120 chr3R:6414853-6414973 1.00e+00 120 chr3L:3846050-3846170 9.70e-02 120 chr2R:14305154-14305274 9.99e-01 120 chr2R:14186561-14186681 1.42e-03 7_[+5(7.04e-05)]_39_[+3(7.74e-05)]_\ 58 chrX:11622316-11622436 9.28e-01 120 chr3R:6368634-6368754 8.60e-01 120 chr2L:9454489-9454609 1.88e-03 35_[+1(7.10e-05)]_63_[+5(9.61e-05)]_\ 6 chr2L:273704-273824 9.51e-01 120 chrX:5696124-5696244 1.00e+00 120 chr3R:26462338-26462458 1.37e-04 4_[+4(1.09e-05)]_10_[+4(6.85e-05)]_\ 15_[+3(8.06e-05)]_67 chr3R:7892768-7892888 9.94e-01 120 chrX:17293492-17293612 1.00e+00 120 chrX:11622116-11622236 8.30e-03 77_[+2(4.67e-06)]_35 chr2L:17428037-17428157 1.97e-02 120 chrX:9350437-9350557 1.00e+00 120 chrX:9202188-9202308 1.00e+00 120 chr3R:16213898-16214018 1.00e+00 120 chr3R:11243219-11243339 6.18e-01 120 chr3L:11419613-11419733 2.35e-03 24_[+1(7.10e-05)]_88 chr2R:9494555-9494675 2.69e-02 24_[+3(8.06e-05)]_88 chr2R:16581766-16581886 9.71e-01 120 chrX:476634-476754 6.52e-01 120 chr3R:14095575-14095695 1.00e+00 120 chr3L:16657046-16657166 1.00e+00 120 chr3L:6807604-6807724 9.99e-01 120 chr3L:17653240-17653360 3.39e-05 55_[+3(2.09e-05)]_1_[+5(7.04e-05)]_\ 48 chr3L:16840612-16840732 1.00e+00 120 chr3R:26006314-26006434 3.92e-01 120 chr2L:18548831-18548951 1.00e+00 120 chr3R:9430562-9430682 2.51e-01 120 chr3R:26006086-26006206 4.36e-04 120 chrX:6067656-6067776 9.99e-01 120 chr3R:21134058-21134178 9.77e-01 120 chr3L:17113390-17113510 3.66e-01 120 chr3L:10893494-10893614 9.97e-01 120 chr2L:10986348-10986468 1.00e+00 120 chrX:17330453-17330573 9.97e-01 120 chr2R:8670243-8670363 2.86e-04 106_[+1(6.60e-06)]_6 chrX:17582071-17582191 1.00e+00 120 chr3R:18906242-18906362 1.00e+00 120 chr2R:13996690-13996810 1.00e+00 120 chrX:9155978-9156098 1.25e-02 70_[+1(1.59e-05)]_42 chr3L:14611418-14611538 1.00e+00 120 chr2L:21789718-21789838 7.78e-03 3_[+1(1.59e-05)]_109 chr3L:17310610-17310730 1.00e+00 120 chr3L:15999734-15999854 4.16e-01 120 chr3R:5620370-5620490 9.35e-01 120 chr2R:12035148-12035268 1.00e+00 120 chr3L:11820008-11820128 1.41e-01 120 chr3R:26020648-26020768 2.21e-02 2_[+5(3.07e-05)]_110 chr3L:7360496-7360616 1.32e-03 78_[+1(3.52e-05)]_34 chr2L:19135116-19135236 4.46e-03 120 chrX:1899510-1899630 3.63e-04 56_[+1(1.59e-05)]_47_[+5(9.61e-05)]_\ 1 chr2L:17588814-17588934 1.00e+00 120 chr2L:18966997-18967117 1.00e+00 120 chr3L:19087996-19088116 9.78e-01 120 chr2R:17469458-17469578 7.98e-01 120 chrX:18282490-18282610 2.77e-04 107_[+2(1.58e-05)]_5 chr3R:30305099-30305219 2.16e-01 120 chr2L:1619290-1619410 1.00e+00 120 chr2R:10551856-10551976 1.64e-03 3_[+2(4.67e-06)]_109 chr3L:18102174-18102294 1.00e+00 120 chr3L:12271401-12271521 8.80e-01 120 chr2L:5445942-5446062 1.00e+00 120 chr3R:26035162-26035282 1.63e-01 120 chrX:9580312-9580432 1.41e-03 75_[+5(6.62e-06)]_37 chr3R:11368814-11368934 9.99e-01 120 chr2R:7054310-7054430 9.94e-01 120 chr3L:14999768-14999888 1.00e+00 120 chr2R:7879077-7879197 9.96e-01 120 chr2R:8127351-8127471 9.75e-01 120 chr3L:6157723-6157843 9.17e-01 120 chr2L:19059041-19059161 1.00e+00 120 chr2R:22242131-22242251 1.32e-01 120 chr2R:9711989-9712109 8.55e-01 120 chr3L:18114116-18114236 1.00e+00 120 chr3R:13964606-13964726 7.31e-02 19_[+1(2.86e-05)]_93 chr3L:7360700-7360820 7.82e-02 120 chr2R:12174581-12174701 6.28e-01 120 chrX:17125269-17125389 1.94e-04 56_[+1(4.18e-05)]_32_[+2(4.67e-06)]_\ 16 chrX:5965977-5966097 1.00e+00 120 chr3L:17937501-17937621 1.99e-03 17_[+5(8.82e-05)]_95 chr2R:11809477-11809597 9.74e-01 120 chr2L:6830292-6830412 9.27e-01 120 chr3L:19016540-19016660 9.99e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************