******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip93F.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:601243-601363 1.0000 120 chr3L:569141-569261 1.0000 120 chr2R:14089529-14089649 1.0000 120 chr3L:4117138-4117258 1.0000 120 chr3R:21976476-21976596 1.0000 120 chrX:9598242-9598362 1.0000 120 chr3R:22003646-22003766 1.0000 120 chrX:9036251-9036371 1.0000 120 chr3R:29776290-29776410 1.0000 120 chr3R:14294449-14294569 1.0000 120 chr3R:13977694-13977814 1.0000 120 chr2L:20319650-20319770 1.0000 120 chr3R:21969988-21970108 1.0000 120 chr2R:17016480-17016600 1.0000 120 chr3L:17506525-17506645 1.0000 120 chr3R:9917488-9917608 1.0000 120 chr3R:9968278-9968398 1.0000 120 chr3R:21351091-21351211 1.0000 120 chr3R:9925370-9925490 1.0000 120 chrX:17875803-17875923 1.0000 120 chr3R:5362729-5362849 1.0000 120 chr3L:4115890-4116010 1.0000 120 chr2L:6081732-6081852 1.0000 120 chr2R:8608038-8608158 1.0000 120 chr3L:13952847-13952967 1.0000 120 chr2R:10768489-10768609 1.0000 120 chr2L:9513922-9514042 1.0000 120 chr3L:11242070-11242190 1.0000 120 chrX:19286325-19286445 1.0000 120 chr3R:14290626-14290746 1.0000 120 chr3R:21890109-21890229 1.0000 120 chr2L:3356932-3357052 1.0000 120 chr2R:18575491-18575611 1.0000 120 chr3R:27128874-27128994 1.0000 120 chr2L:12459287-12459407 1.0000 120 chr2L:8722683-8722803 1.0000 120 chr2R:10076300-10076420 1.0000 120 chr3R:10101981-10102101 1.0000 120 chr3R:10040615-10040735 1.0000 120 chrX:21365574-21365694 1.0000 120 chr2L:303412-303532 1.0000 120 chr3L:1022906-1023026 1.0000 120 chr3L:21282842-21282962 1.0000 120 chrX:1965671-1965791 1.0000 120 chr3R:21977089-21977209 1.0000 120 chr2L:4196038-4196158 1.0000 120 chr3L:3243026-3243146 1.0000 120 chr3R:14780899-14781019 1.0000 120 chr3R:9904023-9904143 1.0000 120 chr3R:9897762-9897882 1.0000 120 chr2R:25002113-25002233 1.0000 120 chr2L:8714400-8714520 1.0000 120 chr2R:11649210-11649330 1.0000 120 chr2L:6867423-6867543 1.0000 120 chr2L:12522047-12522167 1.0000 120 chrX:2197578-2197698 1.0000 120 chr2R:11650039-11650159 1.0000 120 chr2R:10043917-10044037 1.0000 120 chr3R:29789364-29789484 1.0000 120 chrX:19316245-19316365 1.0000 120 chr2R:14138932-14139052 1.0000 120 chr3L:8066417-8066537 1.0000 120 chrX:9618774-9618894 1.0000 120 chr2L:13886846-13886966 1.0000 120 chr2R:16157094-16157214 1.0000 120 chr3R:27927040-27927160 1.0000 120 chr2L:2873034-2873154 1.0000 120 chr3L:9712794-9712914 1.0000 120 chrX:11705377-11705497 1.0000 120 chr3L:10651837-10651957 1.0000 120 chr2R:6692487-6692607 1.0000 120 chr2R:9443834-9443954 1.0000 120 chr3R:21954513-21954633 1.0000 120 chr3R:6399118-6399238 1.0000 120 chr3R:24016100-24016220 1.0000 120 chr3R:12450877-12450997 1.0000 120 chr3L:18826128-18826248 1.0000 120 chr2R:17090499-17090619 1.0000 120 chr3L:11218995-11219115 1.0000 120 chr3L:8359622-8359742 1.0000 120 chr3R:16332207-16332327 1.0000 120 chr2L:8426349-8426469 1.0000 120 chr3R:8109888-8110008 1.0000 120 chr3L:3249409-3249529 1.0000 120 chr3R:9348642-9348762 1.0000 120 chr2R:23983072-23983192 1.0000 120 chr3L:15589243-15589363 1.0000 120 chr3R:14371255-14371375 1.0000 120 chr2R:7627954-7628074 1.0000 120 chr2L:494457-494577 1.0000 120 chr2R:18660936-18661056 1.0000 120 chr3R:23782086-23782206 1.0000 120 chr3L:12910602-12910722 1.0000 120 chr2L:849256-849376 1.0000 120 chr3R:21973186-21973306 1.0000 120 chrX:15500781-15500901 1.0000 120 chr3R:22423149-22423269 1.0000 120 chr2L:7433505-7433625 1.0000 120 chrX:19324850-19324970 1.0000 120 chr2L:14222378-14222498 1.0000 120 chr2R:21638703-21638823 1.0000 120 chr2R:17438765-17438885 1.0000 120 chrX:15042368-15042488 1.0000 120 chr3L:14782713-14782833 1.0000 120 chr2R:7775743-7775863 1.0000 120 chrX:8502152-8502272 1.0000 120 chr2L:9565193-9565313 1.0000 120 chrX:11496536-11496656 1.0000 120 chr3L:10653191-10653311 1.0000 120 chrX:4107617-4107737 1.0000 120 chr3R:19910509-19910629 1.0000 120 chr3R:9927324-9927444 1.0000 120 chr3R:19071258-19071378 1.0000 120 chr3L:18001860-18001980 1.0000 120 chr3R:23216995-23217115 1.0000 120 chr3R:10039370-10039490 1.0000 120 chr3L:10697771-10697891 1.0000 120 chrX:13407870-13407990 1.0000 120 chr3R:23912906-23913026 1.0000 120 chr2R:13025401-13025521 1.0000 120 chr3L:3933765-3933885 1.0000 120 chr3R:29067253-29067373 1.0000 120 chr3L:18014510-18014630 1.0000 120 chr3R:11982575-11982695 1.0000 120 chr3L:9674384-9674504 1.0000 120 chr2R:6522779-6522899 1.0000 120 chr3L:11239530-11239650 1.0000 120 chr2R:10040460-10040580 1.0000 120 chr3R:5647773-5647893 1.0000 120 chr2L:15463595-15463715 1.0000 120 chr3R:8860762-8860882 1.0000 120 chr3R:9925570-9925690 1.0000 120 chr3L:20192784-20192904 1.0000 120 chr2R:7697432-7697552 1.0000 120 chr2R:19199044-19199164 1.0000 120 chr2L:3294728-3294848 1.0000 120 chr2R:14336342-14336462 1.0000 120 chr2R:16127319-16127439 1.0000 120 chrX:20481558-20481678 1.0000 120 chr2R:24335763-24335883 1.0000 120 chr3L:19900505-19900625 1.0000 120 chrX:1829711-1829831 1.0000 120 chr2L:18630733-18630853 1.0000 120 chrX:11923824-11923944 1.0000 120 chr3L:18632508-18632628 1.0000 120 chr3R:24262959-24263079 1.0000 120 chr3L:2461978-2462098 1.0000 120 chr3R:15083707-15083827 1.0000 120 chr3L:16194450-16194570 1.0000 120 chr2R:16210130-16210250 1.0000 120 chr3R:29780873-29780993 1.0000 120 chr2R:16855325-16855445 1.0000 120 chr3R:13828043-13828163 1.0000 120 chr3L:3167175-3167295 1.0000 120 chrX:9032492-9032612 1.0000 120 chr2R:10238738-10238858 1.0000 120 chr2L:14226784-14226904 1.0000 120 chr2R:14337707-14337827 1.0000 120 chr3R:9911899-9912019 1.0000 120 chr2L:7411999-7412119 1.0000 120 chrX:17732165-17732285 1.0000 120 chr3R:24053759-24053879 1.0000 120 chr3L:338267-338387 1.0000 120 chr2L:18148591-18148711 1.0000 120 chr2R:22546354-22546474 1.0000 120 chr3L:12258772-12258892 1.0000 120 chr2L:20084139-20084259 1.0000 120 chr2R:20306616-20306736 1.0000 120 chr3R:15975916-15976036 1.0000 120 chr2L:22139508-22139628 1.0000 120 chr3L:18812298-18812418 1.0000 120 chr2R:14088748-14088868 1.0000 120 chr2R:11735844-11735964 1.0000 120 chrX:15568544-15568664 1.0000 120 chr2L:14241064-14241184 1.0000 120 chr3L:19161612-19161732 1.0000 120 chr2R:21507301-21507421 1.0000 120 chrX:2288346-2288466 1.0000 120 chr3R:9387783-9387903 1.0000 120 chr3L:20230315-20230435 1.0000 120 chr2L:19160808-19160928 1.0000 120 chrX:17873584-17873704 1.0000 120 chr3L:5770091-5770211 1.0000 120 chr3L:3802046-3802166 1.0000 120 chr2L:1693094-1693214 1.0000 120 chr3R:23171996-23172116 1.0000 120 chr2L:8693408-8693528 1.0000 120 chr2R:16226120-16226240 1.0000 120 chrX:17874983-17875103 1.0000 120 chr2L:9011657-9011777 1.0000 120 chr2R:11615809-11615929 1.0000 120 chr3R:14024104-14024224 1.0000 120 chr2L:12495373-12495493 1.0000 120 chrX:11430360-11430480 1.0000 120 chrX:1618181-1618301 1.0000 120 chr2L:19035026-19035146 1.0000 120 chr2R:23718194-23718314 1.0000 120 chrX:3721297-3721417 1.0000 120 chr2L:2010538-2010658 1.0000 120 chr2L:12478768-12478888 1.0000 120 chr3R:24576002-24576122 1.0000 120 chr2L:14221575-14221695 1.0000 120 chr2R:19376531-19376651 1.0000 120 chr2L:10246621-10246741 1.0000 120 chr2L:5291358-5291478 1.0000 120 chrX:756981-757101 1.0000 120 chr2R:24981106-24981226 1.0000 120 chr2L:8360538-8360658 1.0000 120 chr2L:8095296-8095416 1.0000 120 chr2L:20069352-20069472 1.0000 120 chr2L:11039074-11039194 1.0000 120 chr3R:21758570-21758690 1.0000 120 chr3L:3124604-3124724 1.0000 120 chr3R:21156670-21156790 1.0000 120 chr2R:7773735-7773855 1.0000 120 chr3L:19901494-19901614 1.0000 120 chr2L:15281044-15281164 1.0000 120 chr2L:301521-301641 1.0000 120 chr2L:3357131-3357251 1.0000 120 chrX:9582761-9582881 1.0000 120 chr3R:19874030-19874150 1.0000 120 chr3L:17009253-17009373 1.0000 120 chr3R:26463736-26463856 1.0000 120 chr3L:4107321-4107441 1.0000 120 chr2R:7586533-7586653 1.0000 120 chr3L:5356492-5356612 1.0000 120 chr2R:6162502-6162622 1.0000 120 chr2R:24335012-24335132 1.0000 120 chr3R:20788650-20788770 1.0000 120 chr3R:27568642-27568762 1.0000 120 chr2L:8093410-8093530 1.0000 120 chr3R:24568733-24568853 1.0000 120 chr3R:24268463-24268583 1.0000 120 chr2L:18561113-18561233 1.0000 120 chr3L:16984133-16984253 1.0000 120 chr2L:12505290-12505410 1.0000 120 chr3L:20197737-20197857 1.0000 120 chr3R:21150199-21150319 1.0000 120 chr3R:23729805-23729925 1.0000 120 chrX:636031-636151 1.0000 120 chrX:3780377-3780497 1.0000 120 chr2R:6867891-6868011 1.0000 120 chr2L:10320543-10320663 1.0000 120 chrX:10324539-10324659 1.0000 120 chr2R:22121462-22121582 1.0000 120 chr3R:9249514-9249634 1.0000 120 chr3L:16682427-16682547 1.0000 120 chr2R:13997414-13997534 1.0000 120 chr3R:14398051-14398171 1.0000 120 chr3L:12791931-12792051 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Eip93F/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip93F.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.294 C 0.205 G 0.206 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.294 C 0.205 G 0.206 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATATRTAY MEME-1 width = 8 sites = 44 llr = 371 E-value = 9.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:a:4:a: pos.-specific C :::1:::4 probability G ::::6::: matrix T :a:9:a:6 bits 2.3 2.1 1.8 *** ** 1.6 *** ** Relative 1.4 *** ** Entropy 1.1 ******* (12.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATATGTAT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9249514-9249634 56 4.02e-05 AGTATTAATT ATATGTAT TCCTTAAGCA chr3L:20197737-20197857 88 4.02e-05 AAGTTAAGTT ATATGTAT ATTTTCAGGT chr2L:11039074-11039194 31 4.02e-05 atatatatat atatgtat aCACGAGTAT chrX:756981-757101 63 4.02e-05 atatatgtac atatgtat aaatacatGA chrX:11430360-11430480 34 4.02e-05 acatatacgt atatgtat aTAGACTGCA chr2L:18630733-18630853 104 4.02e-05 CATAATTACA ATATGTAT ATAATGTAT chr2R:7697432-7697552 51 4.02e-05 TCGAATGCGT ATATGTAT ATTACTTATT chrX:4107617-4107737 50 4.02e-05 AAAGATTTAC ATATGTAT GTATATCTGT chrX:8502152-8502272 67 4.02e-05 TATTTCACAC ATATGTAT ATATATTTTT chr2R:7775743-7775863 38 4.02e-05 acatatatca atatgtat GTGCAAACCC chr2R:23983072-23983192 18 4.02e-05 atatacgcat atatgtat atatactata chr3R:9348642-9348762 87 4.02e-05 TTTTATTAAT ATATGTAT GGTCAGTGGT chr2L:2873034-2873154 49 4.02e-05 ataaatttac atatgtat acgtatgtat chr2L:12459287-12459407 94 4.02e-05 TATAAAAAGT ATATGTAT CTAAAGAGAG chr2R:8608038-8608158 85 4.02e-05 TTGAATTCAT ATATGTAT GCAGACTTTC chr2R:7586533-7586653 30 6.80e-05 GCCGTTGAAA ATATGTAC ACATATATAG chr3R:21156670-21156790 112 6.80e-05 ACATGTGTGC ATATGTAC A chr2L:10246621-10246741 8 6.80e-05 tacgtac atatgtac atacataagt chr3R:15975916-15976036 15 6.80e-05 GCGACATGCC ATATGTAC AAACGATTTC chr3L:10697771-10697891 66 6.80e-05 CCATATACAC ATATGTAC ATATTTACAT chr3L:3249409-3249529 67 6.80e-05 gtacatatat atatgtac atatgcatac chrX:9618774-9618894 42 6.80e-05 AAACGCCCAC ATATGTAC ATACATATAT chr2L:8722683-8722803 17 6.80e-05 TACTGAATCT ATATGTAC AGATTTCGGT chrX:19286325-19286445 66 6.80e-05 TTGCGGCGCT ATATGTAC TTTTATGGGG chr3L:12791931-12792051 57 1.25e-04 CGCCTTTAAT ATATATAT AAGGTGCACG chrX:3780377-3780497 94 1.25e-04 caaataaacc atatatat gtgtttatgt chrX:636031-636151 97 1.25e-04 CCTCACGCAC ATATATAT AAATCTGTAC chr2L:12505290-12505410 20 1.25e-04 atatacatac atatatat ataaatataa chr2L:19035026-19035146 73 1.25e-04 acacatacgt atatatat GTGTGCGATG chr2L:8693408-8693528 8 1.25e-04 GTACATC ATATATAT TCATATTCAT chr2R:22546354-22546474 103 1.25e-04 ATATTTACAT ATATATAT TATttgagca chr3R:23912906-23913026 61 1.25e-04 TAGATGGTAG ATATATAT AGATATATAC chr2R:17016480-17016600 59 1.25e-04 ATAGTTATAT ATATATAT ATTTCTTTTA chr3R:14294449-14294569 47 1.25e-04 GCGTTAATAT ATATATAT TTTCGATCGC chr3R:24576002-24576122 58 1.65e-04 TAATAACAAA ATATATAC ATGTACAAAA chr3L:5770091-5770211 2 1.65e-04 t atatatac ttaaatgtat chr3L:18632508-18632628 46 1.65e-04 ATTTATATTA ATATATAC ATATGGTTTT chrX:11923824-11923944 6 1.65e-04 TACCA atatatac atacatacat chr3R:5362729-5362849 92 1.93e-04 TATACATTTT ATACGTAT GTACATTGCG chr3R:21969988-21970108 53 1.93e-04 ATACTTGTAT ATACGTAT ATAACGCGAT chrX:17875803-17875923 50 2.52e-04 acatacatac atacataT GTAAGTATGC chr2L:5291358-5291478 59 2.79e-04 GCTTACATAC ATACATAC TTACAAATTG chr3L:18812298-18812418 42 2.79e-04 Gcatgcatac atacatac atacataGTA chr2L:22139508-22139628 82 2.79e-04 AACTGCGCGT ATACATAC CACTGTGGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9249514-9249634 4e-05 55_[+1]_57 chr3L:20197737-20197857 4e-05 87_[+1]_25 chr2L:11039074-11039194 4e-05 30_[+1]_82 chrX:756981-757101 4e-05 62_[+1]_50 chrX:11430360-11430480 4e-05 33_[+1]_79 chr2L:18630733-18630853 4e-05 103_[+1]_9 chr2R:7697432-7697552 4e-05 50_[+1]_62 chrX:4107617-4107737 4e-05 49_[+1]_63 chrX:8502152-8502272 4e-05 66_[+1]_46 chr2R:7775743-7775863 4e-05 37_[+1]_75 chr2R:23983072-23983192 4e-05 17_[+1]_95 chr3R:9348642-9348762 4e-05 86_[+1]_26 chr2L:2873034-2873154 4e-05 48_[+1]_64 chr2L:12459287-12459407 4e-05 93_[+1]_19 chr2R:8608038-8608158 4e-05 84_[+1]_28 chr2R:7586533-7586653 6.8e-05 29_[+1]_83 chr3R:21156670-21156790 6.8e-05 111_[+1]_1 chr2L:10246621-10246741 6.8e-05 7_[+1]_105 chr3R:15975916-15976036 6.8e-05 14_[+1]_98 chr3L:10697771-10697891 6.8e-05 65_[+1]_47 chr3L:3249409-3249529 6.8e-05 66_[+1]_46 chrX:9618774-9618894 6.8e-05 41_[+1]_71 chr2L:8722683-8722803 6.8e-05 16_[+1]_96 chrX:19286325-19286445 6.8e-05 65_[+1]_47 chr3L:12791931-12792051 0.00013 56_[+1]_56 chrX:3780377-3780497 0.00013 93_[+1]_19 chrX:636031-636151 0.00013 96_[+1]_16 chr2L:12505290-12505410 0.00013 19_[+1]_93 chr2L:19035026-19035146 0.00013 72_[+1]_40 chr2L:8693408-8693528 0.00013 7_[+1]_105 chr2R:22546354-22546474 0.00013 102_[+1]_10 chr3R:23912906-23913026 0.00013 60_[+1]_52 chr2R:17016480-17016600 0.00013 58_[+1]_54 chr3R:14294449-14294569 0.00013 46_[+1]_66 chr3R:24576002-24576122 0.00017 57_[+1]_55 chr3L:5770091-5770211 0.00017 1_[+1]_111 chr3L:18632508-18632628 0.00017 45_[+1]_67 chrX:11923824-11923944 0.00017 5_[+1]_107 chr3R:5362729-5362849 0.00019 91_[+1]_21 chr3R:21969988-21970108 0.00019 52_[+1]_60 chrX:17875803-17875923 0.00025 49_[+1]_63 chr2L:5291358-5291478 0.00028 58_[+1]_54 chr3L:18812298-18812418 0.00028 41_[+1]_71 chr2L:22139508-22139628 0.00028 81_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATATRTAY width=8 seqs=44 chr3R:9249514-9249634 ( 56) ATATGTAT 1 chr3L:20197737-20197857 ( 88) ATATGTAT 1 chr2L:11039074-11039194 ( 31) ATATGTAT 1 chrX:756981-757101 ( 63) ATATGTAT 1 chrX:11430360-11430480 ( 34) ATATGTAT 1 chr2L:18630733-18630853 ( 104) ATATGTAT 1 chr2R:7697432-7697552 ( 51) ATATGTAT 1 chrX:4107617-4107737 ( 50) ATATGTAT 1 chrX:8502152-8502272 ( 67) ATATGTAT 1 chr2R:7775743-7775863 ( 38) ATATGTAT 1 chr2R:23983072-23983192 ( 18) ATATGTAT 1 chr3R:9348642-9348762 ( 87) ATATGTAT 1 chr2L:2873034-2873154 ( 49) ATATGTAT 1 chr2L:12459287-12459407 ( 94) ATATGTAT 1 chr2R:8608038-8608158 ( 85) ATATGTAT 1 chr2R:7586533-7586653 ( 30) ATATGTAC 1 chr3R:21156670-21156790 ( 112) ATATGTAC 1 chr2L:10246621-10246741 ( 8) ATATGTAC 1 chr3R:15975916-15976036 ( 15) ATATGTAC 1 chr3L:10697771-10697891 ( 66) ATATGTAC 1 chr3L:3249409-3249529 ( 67) ATATGTAC 1 chrX:9618774-9618894 ( 42) ATATGTAC 1 chr2L:8722683-8722803 ( 17) ATATGTAC 1 chrX:19286325-19286445 ( 66) ATATGTAC 1 chr3L:12791931-12792051 ( 57) ATATATAT 1 chrX:3780377-3780497 ( 94) ATATATAT 1 chrX:636031-636151 ( 97) ATATATAT 1 chr2L:12505290-12505410 ( 20) ATATATAT 1 chr2L:19035026-19035146 ( 73) ATATATAT 1 chr2L:8693408-8693528 ( 8) ATATATAT 1 chr2R:22546354-22546474 ( 103) ATATATAT 1 chr3R:23912906-23913026 ( 61) ATATATAT 1 chr2R:17016480-17016600 ( 59) ATATATAT 1 chr3R:14294449-14294569 ( 47) ATATATAT 1 chr3R:24576002-24576122 ( 58) ATATATAC 1 chr3L:5770091-5770211 ( 2) ATATATAC 1 chr3L:18632508-18632628 ( 46) ATATATAC 1 chrX:11923824-11923944 ( 6) ATATATAC 1 chr3R:5362729-5362849 ( 92) ATACGTAT 1 chr3R:21969988-21970108 ( 53) ATACGTAT 1 chrX:17875803-17875923 ( 50) ATACATAT 1 chr2L:5291358-5291478 ( 59) ATACATAC 1 chr3L:18812298-18812418 ( 42) ATACATAC 1 chr2L:22139508-22139628 ( 82) ATACATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3519 E= 9.2e-004 177 -1210 -1210 -1210 -1210 -1210 -1210 176 177 -1210 -1210 -1210 -1210 -59 -1210 155 48 -1210 152 -1210 -1210 -1210 -1210 176 177 -1210 -1210 -1210 -1210 83 -1210 111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 9.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.136364 0.000000 0.863636 0.409091 0.000000 0.590909 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.636364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATRTAY MEME-1 regular expression -------------------------------------------------------------------------------- ATAT[GA]TA[TC] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCRG MEME-2 width = 8 sites = 39 llr = 330 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1a::51 pos.-specific C 9::::a:2 probability G ::::::46 matrix T 1a9:a:1: bits 2.3 * 2.1 * 1.8 ** *** 1.6 ** *** Relative 1.4 ****** Entropy 1.1 ****** (12.2 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCAG consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19874030-19874150 34 3.30e-05 AATTAATTTG CTTATCGG CTGGTCCGCA chrX:756981-757101 26 3.30e-05 CCGTAATAAG CTTATCAG TCGAGTGAAG chr2L:5291358-5291478 83 3.30e-05 ATTGGTGGCA CTTATCGG CAGTGATAAG chr2L:1693094-1693214 70 3.30e-05 CTTATCGCCG CTTATCAG CTGGCAAGCG chr3R:9387783-9387903 20 3.30e-05 AAAGTCATAT CTTATCGG CTTATCTGGA chr3R:24053759-24053879 14 3.30e-05 CTGTAGCCAG CTTATCGG GCCAAATAAC chr3R:29780873-29780993 20 3.30e-05 CGTGGATTTT CTTATCGG CCCAAAGGAA chr2R:24335763-24335883 25 3.30e-05 CTTTTCTTCG CTTATCAG TCAAGCTATT chrX:13407870-13407990 26 3.30e-05 CTTATCGTTC CTTATCAG GTTTCTCGAA chr3R:19910509-19910629 23 3.30e-05 AATTGCGTTT CTTATCAG CCTTTGTAGA chr2R:17090499-17090619 75 3.30e-05 CCCGCTCGAT CTTATCGG ACATGACATG chr3R:21977089-21977209 1 3.30e-05 . CTTATCAG TGGGGCCCTG chr3L:21282842-21282962 91 3.30e-05 TGGAAACCAG CTTATCAG CAATTACCAC chr2L:3356932-3357052 47 3.30e-05 AACTTGAACT CTTATCAG TCAGGTTGGC chr3L:17506525-17506645 3 3.30e-05 TC CTTATCAG CGAGGTCGAG chr2R:7773735-7773855 69 6.58e-05 TTCTCGCTTT CTTATCGC GACATTCAGC chr2L:12495373-12495493 12 6.58e-05 CAAGGAAACT CTTATCGC CGAGCTGATA chrX:15568544-15568664 78 6.58e-05 GATTATTCGC CTTATCAC AGTGCATATG chr3L:12910602-12910722 58 6.58e-05 GCCCGTCACT CTTATCGC AGTGTGTGAA chrX:11705377-11705497 85 6.58e-05 TGTGCGGAGG CTTATCAC GTTTCGAATT chr3R:27128874-27128994 6 6.58e-05 GCCAG CTTATCGC TCTCCAAGTG chr3R:22003646-22003766 89 6.58e-05 AATATACAAT CTTATCAC AACACCTGAG chr3R:26463736-26463856 19 8.54e-05 CAGTTCATTG CTTATCTG TCAGTGACCC chr3L:3167175-3167295 13 8.54e-05 ATTGCCATAT CTTATCTG AGTTTCCACC chr2R:14336342-14336462 5 8.54e-05 CCAA CTTATCTG AAAGTGAACG chr3L:3802046-3802166 106 1.32e-04 TAATAATAAT CTTATCAA TGCAAAA chr2R:16127319-16127439 81 1.32e-04 TTTTTTGGGC CTTATCAA GAAGTGGCTG chr2R:7627954-7628074 80 1.32e-04 GAGTGGCAAT CTTATCGA ATGTTTCATA chr2L:9513922-9514042 17 1.32e-04 GAATCAATAT CTTATCGA AGGAAGTGCT chr2L:20319650-20319770 91 1.32e-04 GCAATCTAAT CTTATCGA AATGGGTTCG chr3L:12258772-12258892 8 1.65e-04 ATGAAAT CTAATCAG CAAATTGTTG chr2R:6522779-6522899 12 1.65e-04 ACCCAAAATG CTAATCAG TTGAGTATAA chr2L:14222378-14222498 41 1.65e-04 ACCAGCCCGC CTAATCAG TAATTGGGGG chr3R:9968278-9968398 66 1.65e-04 TTCAAGTTCT CTAATCAG ACGTTGAACT chr3R:24268463-24268583 73 1.85e-04 CACACTTAAT CTTATCTC AGTTCCCCAG chr3L:8066417-8066537 55 1.85e-04 ACAGATATAT CTTATCTC TGGGTTTCGG chr3R:20788650-20788770 12 2.32e-04 TTTATTTGGC TTTATCAG CAATTTTTGA chr2R:11649210-11649330 47 2.32e-04 TCGTCAGCTG TTTATCGG GCAATCTGTT chr3R:14780899-14781019 66 2.32e-04 CAAGCGCTTG TTTATCAG CCTACAACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19874030-19874150 3.3e-05 33_[+2]_79 chrX:756981-757101 3.3e-05 25_[+2]_87 chr2L:5291358-5291478 3.3e-05 82_[+2]_30 chr2L:1693094-1693214 3.3e-05 69_[+2]_43 chr3R:9387783-9387903 3.3e-05 19_[+2]_93 chr3R:24053759-24053879 3.3e-05 13_[+2]_99 chr3R:29780873-29780993 3.3e-05 19_[+2]_93 chr2R:24335763-24335883 3.3e-05 24_[+2]_88 chrX:13407870-13407990 3.3e-05 25_[+2]_87 chr3R:19910509-19910629 3.3e-05 22_[+2]_90 chr2R:17090499-17090619 3.3e-05 74_[+2]_38 chr3R:21977089-21977209 3.3e-05 [+2]_112 chr3L:21282842-21282962 3.3e-05 90_[+2]_22 chr2L:3356932-3357052 3.3e-05 46_[+2]_66 chr3L:17506525-17506645 3.3e-05 2_[+2]_110 chr2R:7773735-7773855 6.6e-05 68_[+2]_44 chr2L:12495373-12495493 6.6e-05 11_[+2]_101 chrX:15568544-15568664 6.6e-05 77_[+2]_35 chr3L:12910602-12910722 6.6e-05 57_[+2]_55 chrX:11705377-11705497 6.6e-05 84_[+2]_28 chr3R:27128874-27128994 6.6e-05 5_[+2]_107 chr3R:22003646-22003766 6.6e-05 88_[+2]_24 chr3R:26463736-26463856 8.5e-05 18_[+2]_94 chr3L:3167175-3167295 8.5e-05 12_[+2]_100 chr2R:14336342-14336462 8.5e-05 4_[+2]_108 chr3L:3802046-3802166 0.00013 105_[+2]_7 chr2R:16127319-16127439 0.00013 80_[+2]_32 chr2R:7627954-7628074 0.00013 79_[+2]_33 chr2L:9513922-9514042 0.00013 16_[+2]_96 chr2L:20319650-20319770 0.00013 90_[+2]_22 chr3L:12258772-12258892 0.00017 7_[+2]_105 chr2R:6522779-6522899 0.00017 11_[+2]_101 chr2L:14222378-14222498 0.00017 40_[+2]_72 chr3R:9968278-9968398 0.00017 65_[+2]_47 chr3R:24268463-24268583 0.00018 72_[+2]_40 chr3L:8066417-8066537 0.00018 54_[+2]_58 chr3R:20788650-20788770 0.00023 11_[+2]_101 chr2R:11649210-11649330 0.00023 46_[+2]_66 chr3R:14780899-14781019 0.00023 65_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCRG width=8 seqs=39 chr3R:19874030-19874150 ( 34) CTTATCGG 1 chrX:756981-757101 ( 26) CTTATCAG 1 chr2L:5291358-5291478 ( 83) CTTATCGG 1 chr2L:1693094-1693214 ( 70) CTTATCAG 1 chr3R:9387783-9387903 ( 20) CTTATCGG 1 chr3R:24053759-24053879 ( 14) CTTATCGG 1 chr3R:29780873-29780993 ( 20) CTTATCGG 1 chr2R:24335763-24335883 ( 25) CTTATCAG 1 chrX:13407870-13407990 ( 26) CTTATCAG 1 chr3R:19910509-19910629 ( 23) CTTATCAG 1 chr2R:17090499-17090619 ( 75) CTTATCGG 1 chr3R:21977089-21977209 ( 1) CTTATCAG 1 chr3L:21282842-21282962 ( 91) CTTATCAG 1 chr2L:3356932-3357052 ( 47) CTTATCAG 1 chr3L:17506525-17506645 ( 3) CTTATCAG 1 chr2R:7773735-7773855 ( 69) CTTATCGC 1 chr2L:12495373-12495493 ( 12) CTTATCGC 1 chrX:15568544-15568664 ( 78) CTTATCAC 1 chr3L:12910602-12910722 ( 58) CTTATCGC 1 chrX:11705377-11705497 ( 85) CTTATCAC 1 chr3R:27128874-27128994 ( 6) CTTATCGC 1 chr3R:22003646-22003766 ( 89) CTTATCAC 1 chr3R:26463736-26463856 ( 19) CTTATCTG 1 chr3L:3167175-3167295 ( 13) CTTATCTG 1 chr2R:14336342-14336462 ( 5) CTTATCTG 1 chr3L:3802046-3802166 ( 106) CTTATCAA 1 chr2R:16127319-16127439 ( 81) CTTATCAA 1 chr2R:7627954-7628074 ( 80) CTTATCGA 1 chr2L:9513922-9514042 ( 17) CTTATCGA 1 chr2L:20319650-20319770 ( 91) CTTATCGA 1 chr3L:12258772-12258892 ( 8) CTAATCAG 1 chr2R:6522779-6522899 ( 12) CTAATCAG 1 chr2L:14222378-14222498 ( 41) CTAATCAG 1 chr3R:9968278-9968398 ( 66) CTAATCAG 1 chr3R:24268463-24268583 ( 73) CTTATCTC 1 chr3L:8066417-8066537 ( 55) CTTATCTC 1 chr3R:20788650-20788770 ( 12) TTTATCAG 1 chr2R:11649210-11649330 ( 47) TTTATCGG 1 chr3R:14780899-14781019 ( 66) TTTATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.72248 E= 1.4e+000 -1193 217 -1193 -194 -1193 -1193 -1193 176 -152 -1193 -1193 160 177 -1193 -1193 -1193 -1193 -1193 -1193 176 -1193 229 -1193 -1193 80 -1193 80 -121 -120 17 164 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.4e+000 0.000000 0.923077 0.000000 0.076923 0.000000 0.000000 0.000000 1.000000 0.102564 0.000000 0.000000 0.897436 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.512821 0.000000 0.358974 0.128205 0.128205 0.230769 0.641026 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRG MEME-2 regular expression -------------------------------------------------------------------------------- CTTATC[AG][GC] -------------------------------------------------------------------------------- Time 13.65 secs. ******************************************************************************** ******************************************************************************** MOTIF SWGCSAGC MEME-3 width = 8 sites = 34 llr = 290 E-value = 4.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :4:::5:: pos.-specific C 51:a42:a probability G 5:a:61a: matrix T :4:::1:: bits 2.3 ** ** 2.1 ** ** 1.8 ** ** 1.6 ** ** Relative 1.4 * *** ** Entropy 1.1 * *** ** (12.3 bits) 0.9 * *** ** 0.7 * *** ** 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel CTGCGAGC consensus GA CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:636031-636151 64 1.96e-05 CTACAAGCGG GTGCGAGC GAGAGCGCGC chr3L:20197737-20197857 30 1.96e-05 TAGACTTATT CAGCGAGC GGTTTCTTTG chr2L:18561113-18561233 106 1.96e-05 GTCGCCGTGG GTGCGAGC GAGATGA chr3L:2461978-2462098 64 1.96e-05 TTGAAAATGG GTGCGAGC TGACGTCATG chr2L:8714400-8714520 40 1.96e-05 ATTTCACTTG GTGCGAGC TTGAAATGGA chr2R:18575491-18575611 31 1.96e-05 TTAACTGTTC GTGCGAGC GTTGAACTTC chr3R:10101981-10102101 68 3.27e-05 TGTTTTGTAT GAGCGAGC TCgtgtgtgt chr3R:9917488-9917608 47 3.27e-05 CCAAACCAAA CTGCCAGC GGAAGTCGGG chr2R:24335012-24335132 24 4.57e-05 GTCGGCAGCG CAGCCAGC GCTCATTATT chr2R:7586533-7586653 14 4.57e-05 TGCTTCCTTT GTGCCAGC CGTTGAAAAT chr3R:24262959-24263079 8 4.57e-05 TAAGCCA CAGCCAGC ACTCAATCGA chr3R:9925570-9925690 68 4.57e-05 GCAGCTGACt cagccagc cagtcagtca chr2L:2873034-2873154 105 4.57e-05 TGTTGTTGCG CAGCCAGC TGAGCGCG chr2R:14138932-14139052 64 4.57e-05 AAGGGGGAAG CAGCCAGC CCCTCCAAAA chr2L:10246621-10246741 28 6.60e-05 acataagtac gtgcgcgc gtatgtttgt chr2R:11650039-11650159 41 6.60e-05 GAAAAAGCAA CAGCGCGC CATGAGCTCG chr2L:6081732-6081852 53 6.60e-05 CCGAATTCTG CAGCGCGC CGTTTATTTA chrX:17875803-17875923 10 6.60e-05 ACTTGTCTC GTGCGCGC AAAGATACAA chr2L:14222378-14222498 33 8.42e-05 TACGGAAAAC CAGCCCGC CTAATCAGTA chr2L:13886846-13886966 42 8.42e-05 TACTCTTCCT GTGCCCGC ATGATAAATG chr3L:21282842-21282962 49 9.32e-05 GAAAAGCCAA GAGCCCGC TATCAGGCAA chr3R:5647773-5647893 88 9.78e-05 CACCGCTCGA GCGCGAGC GAGATGGCTA chr3L:3167175-3167295 113 1.02e-04 TGCCTTGTGA CCGCCAGC chr2R:11735844-11735964 15 1.11e-04 CCCCGATAAG CTGCGGGC CAAAAATAAG chrX:9032492-9032612 70 1.11e-04 CCATTAAAAT GCGCCAGC TTTTTTGGCA chr3R:9927324-9927444 47 1.11e-04 TATTCCCAGG CTGCGGGC GTGGTTTTGC chr2R:16855325-16855445 113 1.24e-04 TGAAAACACG CCGCGCGC chrX:3721297-3721417 13 1.68e-04 AAGCCACACA GTGCGTGC TAAAAATATG chr3R:14371255-14371375 109 1.68e-04 GTGAGATTGT GTGCGTGC CTCt chr3R:9925370-9925490 27 1.68e-04 ATTACAATTT CAGCCGGC TGTttttcat chr3R:11982575-11982695 69 1.89e-04 CAGAGAAGTA CTGCCTGC TTAATATTAT chr2L:12522047-12522167 77 1.89e-04 gaagaaaCAC GAGCGTGC TGCAAGCGGG chr2R:24981106-24981226 60 2.02e-04 TGCAACCGTG CAGCCTGC TCACTGCTCG chr3L:18826128-18826248 70 2.12e-04 AAATGAAAGT CCGCGGGC CAAAAATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:636031-636151 2e-05 63_[+3]_49 chr3L:20197737-20197857 2e-05 29_[+3]_83 chr2L:18561113-18561233 2e-05 105_[+3]_7 chr3L:2461978-2462098 2e-05 63_[+3]_49 chr2L:8714400-8714520 2e-05 39_[+3]_73 chr2R:18575491-18575611 2e-05 30_[+3]_82 chr3R:10101981-10102101 3.3e-05 67_[+3]_45 chr3R:9917488-9917608 3.3e-05 46_[+3]_66 chr2R:24335012-24335132 4.6e-05 23_[+3]_89 chr2R:7586533-7586653 4.6e-05 13_[+3]_99 chr3R:24262959-24263079 4.6e-05 7_[+3]_105 chr3R:9925570-9925690 4.6e-05 67_[+3]_45 chr2L:2873034-2873154 4.6e-05 104_[+3]_8 chr2R:14138932-14139052 4.6e-05 63_[+3]_49 chr2L:10246621-10246741 6.6e-05 27_[+3]_85 chr2R:11650039-11650159 6.6e-05 40_[+3]_72 chr2L:6081732-6081852 6.6e-05 52_[+3]_60 chrX:17875803-17875923 6.6e-05 9_[+3]_103 chr2L:14222378-14222498 8.4e-05 32_[+3]_80 chr2L:13886846-13886966 8.4e-05 41_[+3]_71 chr3L:21282842-21282962 9.3e-05 48_[+3]_64 chr3R:5647773-5647893 9.8e-05 87_[+3]_25 chr3L:3167175-3167295 0.0001 112_[+3] chr2R:11735844-11735964 0.00011 14_[+3]_98 chrX:9032492-9032612 0.00011 69_[+3]_43 chr3R:9927324-9927444 0.00011 46_[+3]_66 chr2R:16855325-16855445 0.00012 112_[+3] chrX:3721297-3721417 0.00017 12_[+3]_100 chr3R:14371255-14371375 0.00017 108_[+3]_4 chr3R:9925370-9925490 0.00017 26_[+3]_86 chr3R:11982575-11982695 0.00019 68_[+3]_44 chr2L:12522047-12522167 0.00019 76_[+3]_36 chr2R:24981106-24981226 0.0002 59_[+3]_53 chr3L:18826128-18826248 0.00021 69_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SWGCSAGC width=8 seqs=34 chrX:636031-636151 ( 64) GTGCGAGC 1 chr3L:20197737-20197857 ( 30) CAGCGAGC 1 chr2L:18561113-18561233 ( 106) GTGCGAGC 1 chr3L:2461978-2462098 ( 64) GTGCGAGC 1 chr2L:8714400-8714520 ( 40) GTGCGAGC 1 chr2R:18575491-18575611 ( 31) GTGCGAGC 1 chr3R:10101981-10102101 ( 68) GAGCGAGC 1 chr3R:9917488-9917608 ( 47) CTGCCAGC 1 chr2R:24335012-24335132 ( 24) CAGCCAGC 1 chr2R:7586533-7586653 ( 14) GTGCCAGC 1 chr3R:24262959-24263079 ( 8) CAGCCAGC 1 chr3R:9925570-9925690 ( 68) CAGCCAGC 1 chr2L:2873034-2873154 ( 105) CAGCCAGC 1 chr2R:14138932-14139052 ( 64) CAGCCAGC 1 chr2L:10246621-10246741 ( 28) GTGCGCGC 1 chr2R:11650039-11650159 ( 41) CAGCGCGC 1 chr2L:6081732-6081852 ( 53) CAGCGCGC 1 chrX:17875803-17875923 ( 10) GTGCGCGC 1 chr2L:14222378-14222498 ( 33) CAGCCCGC 1 chr2L:13886846-13886966 ( 42) GTGCCCGC 1 chr3L:21282842-21282962 ( 49) GAGCCCGC 1 chr3R:5647773-5647893 ( 88) GCGCGAGC 1 chr3L:3167175-3167295 ( 113) CCGCCAGC 1 chr2R:11735844-11735964 ( 15) CTGCGGGC 1 chrX:9032492-9032612 ( 70) GCGCCAGC 1 chr3R:9927324-9927444 ( 47) CTGCGGGC 1 chr2R:16855325-16855445 ( 113) CCGCGCGC 1 chrX:3721297-3721417 ( 13) GTGCGTGC 1 chr3R:14371255-14371375 ( 109) GTGCGTGC 1 chr3R:9925370-9925490 ( 27) CAGCCGGC 1 chr3R:11982575-11982695 ( 69) CTGCCTGC 1 chr2L:12522047-12522167 ( 77) GAGCGTGC 1 chr2R:24981106-24981226 ( 60) CAGCCTGC 1 chr3L:18826128-18826248 ( 70) CCGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 4.8e+002 -1173 137 119 -1173 49 -48 -1173 58 -1173 -1173 228 -1173 -1173 229 -1173 -1173 -1173 111 144 -1173 77 20 -80 -101 -1173 -1173 228 -1173 -1173 229 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 4.8e+002 0.000000 0.529412 0.470588 0.000000 0.411765 0.147059 0.000000 0.441176 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.441176 0.558824 0.000000 0.500000 0.235294 0.117647 0.147059 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGCSAGC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][TA]GC[GC][AC]GC -------------------------------------------------------------------------------- Time 19.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCCCCAA MEME-4 width = 8 sites = 16 llr = 157 E-value = 5.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2::29a pos.-specific C :48aa8:: probability G a6::::1: matrix T :::::::: bits 2.3 * ** 2.1 * ** 1.8 * ** * 1.6 * **** * Relative 1.4 ******** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCCCAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6867891-6868011 21 6.48e-06 CCTTTAAACT GGCCCCAA AGCAGACCCC chr3L:17009253-17009373 88 6.48e-06 TCAGATTAAT GGCCCCAA AAATAAATGG chr3R:24576002-24576122 11 6.48e-06 CACGTTCATT GGCCCCAA CAGCAACAAC chr3R:19910509-19910629 77 6.48e-06 CGCAGTCAGT GGCCCCAA TGCAGCGGCG chr2L:13886846-13886966 88 6.48e-06 AATTCAATTC GGCCCCAA AACTGATAAA chr3R:23729805-23729925 31 1.29e-05 GCGCTAGCTA GCCCCCAA GTCTTTGTGC chr2L:19035026-19035146 2 1.29e-05 A GCCCCCAA TAATCGCTTT chr3R:27927040-27927160 32 1.29e-05 CCCACATTTC GCCCCCAA ATCATTCTTG chr2R:10076300-10076420 14 1.75e-05 TGAGGCCTCA GGCCCCGA GATATTGCTG chr2L:9565193-9565313 88 2.20e-05 TTGGGTTAGG GCCCCCGA CCTCAGCGTT chr2R:24981106-24981226 94 4.06e-05 GTACCCGTCG GGCCCAAA TGTTTACACA chr3L:18014510-18014630 64 4.06e-05 GAAGAGTGGC GGCCCAAA AGTCGCGGGA chr3R:21954513-21954633 46 4.06e-05 GCGAATCGGG GGACCCAA AGTCTTTTTT chrX:17732165-17732285 95 5.91e-05 aaaacaaaaa gccccaaa caaCGTAAAT chr3R:22423149-22423269 70 5.91e-05 ACGGTCGGCA GCACCCAA TAACTGATAA chr2R:7627954-7628074 2 5.91e-05 A GCACCCAA ATGTATGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6867891-6868011 6.5e-06 20_[+4]_92 chr3L:17009253-17009373 6.5e-06 87_[+4]_25 chr3R:24576002-24576122 6.5e-06 10_[+4]_102 chr3R:19910509-19910629 6.5e-06 76_[+4]_36 chr2L:13886846-13886966 6.5e-06 87_[+4]_25 chr3R:23729805-23729925 1.3e-05 30_[+4]_82 chr2L:19035026-19035146 1.3e-05 1_[+4]_111 chr3R:27927040-27927160 1.3e-05 31_[+4]_81 chr2R:10076300-10076420 1.7e-05 13_[+4]_99 chr2L:9565193-9565313 2.2e-05 87_[+4]_25 chr2R:24981106-24981226 4.1e-05 93_[+4]_19 chr3L:18014510-18014630 4.1e-05 63_[+4]_49 chr3R:21954513-21954633 4.1e-05 45_[+4]_67 chrX:17732165-17732285 5.9e-05 94_[+4]_18 chr3R:22423149-22423269 5.9e-05 69_[+4]_43 chr2R:7627954-7628074 5.9e-05 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCCCCAA width=8 seqs=16 chr2R:6867891-6868011 ( 21) GGCCCCAA 1 chr3L:17009253-17009373 ( 88) GGCCCCAA 1 chr3R:24576002-24576122 ( 11) GGCCCCAA 1 chr3R:19910509-19910629 ( 77) GGCCCCAA 1 chr2L:13886846-13886966 ( 88) GGCCCCAA 1 chr3R:23729805-23729925 ( 31) GCCCCCAA 1 chr2L:19035026-19035146 ( 2) GCCCCCAA 1 chr3R:27927040-27927160 ( 32) GCCCCCAA 1 chr2R:10076300-10076420 ( 14) GGCCCCGA 1 chr2L:9565193-9565313 ( 88) GCCCCCGA 1 chr2R:24981106-24981226 ( 94) GGCCCAAA 1 chr3L:18014510-18014630 ( 64) GGCCCAAA 1 chr3R:21954513-21954633 ( 46) GGACCCAA 1 chrX:17732165-17732285 ( 95) GCCCCAAA 1 chr3R:22423149-22423269 ( 70) GCACCCAA 1 chr2R:7627954-7628074 ( 2) GCACCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 5.1e+002 -1064 -1064 228 -1064 -1064 110 145 -1064 -65 199 -1064 -1064 -1064 229 -1064 -1064 -1064 229 -1064 -1064 -65 199 -1064 -1064 157 -1064 -72 -1064 177 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.437500 0.562500 0.000000 0.187500 0.812500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAA MEME-4 regular expression -------------------------------------------------------------------------------- G[GC]CCCCAA -------------------------------------------------------------------------------- Time 25.87 secs. ******************************************************************************** ******************************************************************************** MOTIF SCRATTGC MEME-5 width = 8 sites = 21 llr = 194 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::3a:::: pos.-specific C 4a:::2:a probability G 6:7:2:a: matrix T ::::88:: bits 2.3 * ** 2.1 * ** 1.8 * * ** 1.6 * * ** Relative 1.4 ** * ** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGATTGC consensus C A GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:12505290-12505410 100 9.46e-06 GAGATAGGAA GCGATTGC AGAAATGAAC chr2L:20069352-20069472 56 9.46e-06 GCTCTTGTCG GCGATTGC TGCGACGGGC chr3L:16194450-16194570 49 9.46e-06 CACTTGGCCT GCGATTGC GATAACGCAC chr3L:10653191-10653311 108 9.46e-06 ACAGTACGCT GCGATTGC AATAA chr3R:21969988-21970108 66 9.46e-06 CGTATATAAC GCGATTGC CCTCCCATAA chr2L:301521-301641 4 1.89e-05 GGC CCGATTGC CTGATCGCCC chr3R:23171996-23172116 36 1.89e-05 GCGAATATAG CCGATTGC TCACGATTCA chr2L:7433505-7433625 100 3.20e-05 CGTGGCAGAG GCGATCGC AGTCGTCTTG chr3L:3249409-3249529 17 3.20e-05 ATAAAATGAA GCGATCGc acacatactc chr3L:8359622-8359742 14 3.20e-05 TTGAGGTGGC GCGATCGC CGAACACGCC chr3L:17506525-17506645 37 3.20e-05 GATAAGATTT GCGAGTGC AGCCAGTCCA chrX:1829711-1829831 87 4.55e-05 ACAACCCCCT GCAATTGC ACCTCGGGAT chr3R:9925370-9925490 91 4.55e-05 AAGTTGAAGC GCAATTGC AGAAGTTGCA chr3R:24262959-24263079 91 5.86e-05 CCCGTGCTGG CCGAGTGC ACTGGATTGT chr2R:10076300-10076420 94 5.86e-05 AATATCATCG CCGATCGC GCGATAAACG chr2R:10768489-10768609 8 5.86e-05 GTCGAAT CCGAGTGC AATCAGTTCC chr3L:16984133-16984253 49 7.20e-05 TTACGCAAAA CCAATTGC GAGTGAAAAA chr2L:9011657-9011777 26 7.20e-05 GTTCCCCTTC CCAATTGC TACCAATTCT chr3L:10651837-10651957 84 9.54e-05 aaaaacaaGT GCAAGTGC AATGATGACG chr2R:8608038-8608158 13 9.54e-05 CGGGCCATAT GCAAGTGC GATAAGAACA chrX:756981-757101 96 1.19e-04 CAAACATTCC CCAATCGC CATCGAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12505290-12505410 9.5e-06 99_[+5]_13 chr2L:20069352-20069472 9.5e-06 55_[+5]_57 chr3L:16194450-16194570 9.5e-06 48_[+5]_64 chr3L:10653191-10653311 9.5e-06 107_[+5]_5 chr3R:21969988-21970108 9.5e-06 65_[+5]_47 chr2L:301521-301641 1.9e-05 3_[+5]_109 chr3R:23171996-23172116 1.9e-05 35_[+5]_77 chr2L:7433505-7433625 3.2e-05 99_[+5]_13 chr3L:3249409-3249529 3.2e-05 16_[+5]_96 chr3L:8359622-8359742 3.2e-05 13_[+5]_99 chr3L:17506525-17506645 3.2e-05 36_[+5]_76 chrX:1829711-1829831 4.6e-05 86_[+5]_26 chr3R:9925370-9925490 4.6e-05 90_[+5]_22 chr3R:24262959-24263079 5.9e-05 90_[+5]_22 chr2R:10076300-10076420 5.9e-05 93_[+5]_19 chr2R:10768489-10768609 5.9e-05 7_[+5]_105 chr3L:16984133-16984253 7.2e-05 48_[+5]_64 chr2L:9011657-9011777 7.2e-05 25_[+5]_87 chr3L:10651837-10651957 9.5e-05 83_[+5]_29 chr2R:8608038-8608158 9.5e-05 12_[+5]_100 chrX:756981-757101 0.00012 95_[+5]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCRATTGC width=8 seqs=21 chr2L:12505290-12505410 ( 100) GCGATTGC 1 chr2L:20069352-20069472 ( 56) GCGATTGC 1 chr3L:16194450-16194570 ( 49) GCGATTGC 1 chr3L:10653191-10653311 ( 108) GCGATTGC 1 chr3R:21969988-21970108 ( 66) GCGATTGC 1 chr2L:301521-301641 ( 4) CCGATTGC 1 chr3R:23171996-23172116 ( 36) CCGATTGC 1 chr2L:7433505-7433625 ( 100) GCGATCGC 1 chr3L:3249409-3249529 ( 17) GCGATCGC 1 chr3L:8359622-8359742 ( 14) GCGATCGC 1 chr3L:17506525-17506645 ( 37) GCGAGTGC 1 chrX:1829711-1829831 ( 87) GCAATTGC 1 chr3R:9925370-9925490 ( 91) GCAATTGC 1 chr3R:24262959-24263079 ( 91) CCGAGTGC 1 chr2R:10076300-10076420 ( 94) CCGATCGC 1 chr2R:10768489-10768609 ( 8) CCGAGTGC 1 chr3L:16984133-16984253 ( 49) CCAATTGC 1 chr2L:9011657-9011777 ( 26) CCAATTGC 1 chr3L:10651837-10651957 ( 84) GCAAGTGC 1 chr2R:8608038-8608158 ( 13) GCAAGTGC 1 chrX:756981-757101 ( 96) CCAATCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8872 E= 2.5e+004 -1104 90 159 -1104 -1104 229 -1104 -1104 18 -1104 170 -1104 177 -1104 -1104 -1104 -1104 -1104 21 136 -1104 22 -1104 136 -1104 -1104 228 -1104 -1104 229 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.5e+004 0.000000 0.380952 0.619048 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.238095 0.761905 0.000000 0.238095 0.000000 0.761905 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRATTGC MEME-5 regular expression -------------------------------------------------------------------------------- [GC]C[GA]A[TG][TC]GC -------------------------------------------------------------------------------- Time 31.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:601243-601363 1.01e-01 120 chr3L:569141-569261 2.73e-01 120 chr2R:14089529-14089649 1.74e-01 120 chr3L:4117138-4117258 3.68e-02 120 chr3R:21976476-21976596 7.28e-02 120 chrX:9598242-9598362 5.66e-01 120 chr3R:22003646-22003766 1.32e-01 88_[+2(6.58e-05)]_24 chrX:9036251-9036371 8.52e-01 120 chr3R:29776290-29776410 8.83e-01 120 chr3R:14294449-14294569 1.47e-02 120 chr3R:13977694-13977814 2.86e-01 120 chr2L:20319650-20319770 2.64e-01 120 chr3R:21969988-21970108 1.31e-02 65_[+5(9.46e-06)]_47 chr2R:17016480-17016600 1.34e-01 120 chr3L:17506525-17506645 1.85e-03 2_[+2(3.30e-05)]_26_[+5(3.20e-05)]_\ 76 chr3R:9917488-9917608 2.76e-02 46_[+3(3.27e-05)]_66 chr3R:9968278-9968398 1.47e-01 120 chr3R:21351091-21351211 2.23e-01 120 chr3R:9925370-9925490 4.09e-02 90_[+5(4.55e-05)]_22 chrX:17875803-17875923 9.60e-03 9_[+3(6.60e-05)]_103 chr3R:5362729-5362849 2.33e-01 120 chr3L:4115890-4116010 6.70e-01 120 chr2L:6081732-6081852 7.78e-02 52_[+3(6.60e-05)]_60 chr2R:8608038-8608158 2.35e-03 12_[+5(9.54e-05)]_64_[+1(4.02e-05)]_\ 28 chr3L:13952847-13952967 7.10e-01 120 chr2R:10768489-10768609 4.09e-02 7_[+5(5.86e-05)]_105 chr2L:9513922-9514042 2.85e-02 120 chr3L:11242070-11242190 8.04e-01 120 chrX:19286325-19286445 1.61e-01 65_[+1(6.80e-05)]_47 chr3R:14290626-14290746 3.09e-01 120 chr3R:21890109-21890229 4.19e-01 120 chr2L:3356932-3357052 1.83e-02 46_[+2(3.30e-05)]_66 chr2R:18575491-18575611 4.63e-02 30_[+3(1.96e-05)]_82 chr3R:27128874-27128994 1.34e-02 5_[+2(6.58e-05)]_26_[+5(9.54e-05)]_\ 73 chr2L:12459287-12459407 9.66e-02 93_[+1(4.02e-05)]_19 chr2L:8722683-8722803 1.80e-02 16_[+1(6.80e-05)]_96 chr2R:10076300-10076420 7.03e-04 13_[+4(1.75e-05)]_72_[+5(5.86e-05)]_\ 19 chr3R:10101981-10102101 1.92e-02 67_[+3(3.27e-05)]_45 chr3R:10040615-10040735 6.70e-01 120 chrX:21365574-21365694 2.75e-01 120 chr2L:303412-303532 5.87e-01 120 chr3L:1022906-1023026 6.62e-01 120 chr3L:21282842-21282962 3.06e-03 48_[+3(9.32e-05)]_34_[+2(3.30e-05)]_\ 22 chrX:1965671-1965791 6.41e-01 120 chr3R:21977089-21977209 5.32e-03 [+2(3.30e-05)]_112 chr2L:4196038-4196158 8.12e-02 120 chr3L:3243026-3243146 6.47e-01 120 chr3R:14780899-14781019 3.45e-02 120 chr3R:9904023-9904143 6.17e-01 120 chr3R:9897762-9897882 1.30e-02 120 chr2R:25002113-25002233 3.69e-01 120 chr2L:8714400-8714520 7.76e-02 39_[+3(1.96e-05)]_73 chr2R:11649210-11649330 1.87e-01 120 chr2L:6867423-6867543 9.03e-02 120 chr2L:12522047-12522167 1.63e-01 120 chrX:2197578-2197698 1.80e-01 120 chr2R:11650039-11650159 2.77e-01 40_[+3(6.60e-05)]_72 chr2R:10043917-10044037 7.13e-02 120 chr3R:29789364-29789484 7.54e-01 120 chrX:19316245-19316365 4.64e-02 120 chr2R:14138932-14139052 3.30e-02 63_[+3(4.57e-05)]_49 chr3L:8066417-8066537 9.66e-03 120 chrX:9618774-9618894 3.27e-03 41_[+1(6.80e-05)]_71 chr2L:13886846-13886966 3.79e-03 41_[+3(8.42e-05)]_38_[+4(6.48e-06)]_\ 25 chr2R:16157094-16157214 4.45e-01 120 chr3R:27927040-27927160 1.84e-03 31_[+4(1.29e-05)]_81 chr2L:2873034-2873154 4.48e-03 48_[+1(4.02e-05)]_48_[+3(4.57e-05)]_\ 8 chr3L:9712794-9712914 1.37e-01 120 chrX:11705377-11705497 4.00e-02 84_[+2(6.58e-05)]_28 chr3L:10651837-10651957 2.33e-01 83_[+5(9.54e-05)]_29 chr2R:6692487-6692607 3.62e-01 120 chr2R:9443834-9443954 1.30e-01 120 chr3R:21954513-21954633 2.41e-02 45_[+4(4.06e-05)]_67 chr3R:6399118-6399238 4.33e-01 120 chr3R:24016100-24016220 3.90e-01 120 chr3R:12450877-12450997 3.35e-01 120 chr3L:18826128-18826248 5.26e-02 120 chr2R:17090499-17090619 2.76e-02 74_[+2(3.30e-05)]_38 chr3L:11218995-11219115 2.14e-01 120 chr3L:8359622-8359742 2.85e-03 13_[+5(3.20e-05)]_99 chr3R:16332207-16332327 4.64e-01 120 chr2L:8426349-8426469 5.90e-01 120 chr3R:8109888-8110008 2.36e-01 120 chr3L:3249409-3249529 3.04e-03 16_[+5(3.20e-05)]_42_[+1(6.80e-05)]_\ 46 chr3R:9348642-9348762 1.28e-01 86_[+1(4.02e-05)]_26 chr2R:23983072-23983192 3.50e-02 17_[+1(4.02e-05)]_95 chr3L:15589243-15589363 9.23e-01 120 chr3R:14371255-14371375 3.06e-01 120 chr2R:7627954-7628074 5.58e-03 1_[+4(5.91e-05)]_111 chr2L:494457-494577 1.73e-01 120 chr2R:18660936-18661056 7.26e-01 120 chr3R:23782086-23782206 9.52e-01 120 chr3L:12910602-12910722 3.80e-03 57_[+2(6.58e-05)]_55 chr2L:849256-849376 1.57e-01 120 chr3R:21973186-21973306 8.82e-01 120 chrX:15500781-15500901 3.46e-01 120 chr3R:22423149-22423269 1.91e-01 69_[+4(5.91e-05)]_43 chr2L:7433505-7433625 5.67e-02 99_[+5(3.20e-05)]_13 chrX:19324850-19324970 7.53e-01 120 chr2L:14222378-14222498 1.05e-02 32_[+3(8.42e-05)]_80 chr2R:21638703-21638823 1.31e-01 120 chr2R:17438765-17438885 4.11e-01 120 chrX:15042368-15042488 7.63e-01 120 chr3L:14782713-14782833 6.02e-01 120 chr2R:7775743-7775863 1.26e-01 37_[+1(4.02e-05)]_75 chrX:8502152-8502272 3.04e-03 66_[+1(4.02e-05)]_46 chr2L:9565193-9565313 1.40e-01 87_[+4(2.20e-05)]_25 chrX:11496536-11496656 4.52e-01 120 chr3L:10653191-10653311 2.07e-02 107_[+5(9.46e-06)]_5 chrX:4107617-4107737 4.52e-02 49_[+1(4.02e-05)]_63 chr3R:19910509-19910629 4.62e-04 22_[+2(3.30e-05)]_46_[+4(6.48e-06)]_\ 36 chr3R:9927324-9927444 1.56e-01 120 chr3R:19071258-19071378 6.86e-01 120 chr3L:18001860-18001980 9.92e-02 120 chr3R:23216995-23217115 1.12e-01 120 chr3R:10039370-10039490 2.41e-01 120 chr3L:10697771-10697891 1.91e-01 65_[+1(6.80e-05)]_47 chrX:13407870-13407990 2.62e-02 25_[+2(3.30e-05)]_87 chr3R:23912906-23913026 5.98e-02 120 chr2R:13025401-13025521 7.37e-01 120 chr3L:3933765-3933885 5.96e-01 120 chr3R:29067253-29067373 9.67e-02 120 chr3L:18014510-18014630 1.49e-01 63_[+4(4.06e-05)]_49 chr3R:11982575-11982695 8.38e-02 120 chr3L:9674384-9674504 7.69e-01 120 chr2R:6522779-6522899 2.97e-02 120 chr3L:11239530-11239650 1.64e-01 120 chr2R:10040460-10040580 3.04e-01 120 chr3R:5647773-5647893 6.80e-02 87_[+3(9.78e-05)]_25 chr2L:15463595-15463715 5.42e-01 120 chr3R:8860762-8860882 3.72e-01 120 chr3R:9925570-9925690 8.93e-02 67_[+3(4.57e-05)]_45 chr3L:20192784-20192904 3.51e-01 120 chr2R:7697432-7697552 2.79e-02 50_[+1(4.02e-05)]_62 chr2R:19199044-19199164 5.01e-01 120 chr2L:3294728-3294848 1.59e-01 120 chr2R:14336342-14336462 2.39e-02 4_[+2(8.54e-05)]_108 chr2R:16127319-16127439 7.97e-02 120 chrX:20481558-20481678 9.31e-01 120 chr2R:24335763-24335883 7.35e-03 24_[+2(3.30e-05)]_88 chr3L:19900505-19900625 3.45e-01 120 chrX:1829711-1829831 6.89e-02 86_[+5(4.55e-05)]_26 chr2L:18630733-18630853 1.72e-01 103_[+1(4.02e-05)]_9 chrX:11923824-11923944 2.62e-02 120 chr3L:18632508-18632628 8.41e-02 120 chr3R:24262959-24263079 5.06e-03 7_[+3(4.57e-05)]_75_[+5(5.86e-05)]_\ 22 chr3L:2461978-2462098 2.87e-02 63_[+3(1.96e-05)]_49 chr3R:15083707-15083827 1.82e-01 120 chr3L:16194450-16194570 5.93e-02 48_[+5(9.46e-06)]_64 chr2R:16210130-16210250 4.01e-01 120 chr3R:29780873-29780993 1.06e-02 19_[+2(3.30e-05)]_93 chr2R:16855325-16855445 2.47e-02 120 chr3R:13828043-13828163 3.36e-02 21_[+5(1.89e-05)]_91 chr3L:3167175-3167295 2.39e-03 12_[+2(8.54e-05)]_100 chrX:9032492-9032612 9.83e-02 120 chr2R:10238738-10238858 7.77e-01 120 chr2L:14226784-14226904 9.35e-01 120 chr2R:14337707-14337827 5.43e-01 120 chr3R:9911899-9912019 6.82e-02 120 chr2L:7411999-7412119 3.53e-01 120 chrX:17732165-17732285 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25_[+2(3.30e-05)]_21_[+1(6.80e-05)]_\ [+1(4.02e-05)]_50 chr2R:24981106-24981226 1.44e-02 93_[+4(4.06e-05)]_19 chr2L:8360538-8360658 3.83e-01 120 chr2L:8095296-8095416 7.85e-01 120 chr2L:20069352-20069472 1.27e-02 55_[+5(9.46e-06)]_57 chr2L:11039074-11039194 2.22e-01 14_[+1(4.02e-05)]_8_[+1(4.02e-05)]_\ 82 chr3R:21758570-21758690 5.79e-02 120 chr3L:3124604-3124724 1.74e-01 120 chr3R:21156670-21156790 5.47e-03 111_[+1(6.80e-05)]_1 chr2R:7773735-7773855 1.67e-02 68_[+2(6.58e-05)]_44 chr3L:19901494-19901614 8.72e-01 120 chr2L:15281044-15281164 5.08e-01 120 chr2L:301521-301641 5.60e-03 3_[+5(1.89e-05)]_109 chr2L:3357131-3357251 7.04e-01 120 chrX:9582761-9582881 3.71e-01 120 chr3R:19874030-19874150 1.18e-03 33_[+2(3.30e-05)]_79 chr3L:17009253-17009373 1.66e-03 87_[+4(6.48e-06)]_25 chr3R:26463736-26463856 9.06e-02 18_[+2(8.54e-05)]_94 chr3L:4107321-4107441 7.94e-02 120 chr2R:7586533-7586653 6.83e-03 13_[+3(4.57e-05)]_8_[+1(6.80e-05)]_\ 83 chr3L:5356492-5356612 9.42e-01 120 chr2R:6162502-6162622 2.99e-01 120 chr2R:24335012-24335132 1.14e-01 2_[+3(6.60e-05)]_13_[+3(4.57e-05)]_\ 89 chr3R:20788650-20788770 1.39e-02 120 chr3R:27568642-27568762 5.59e-01 120 chr2L:8093410-8093530 6.56e-01 120 chr3R:24568733-24568853 3.68e-01 120 chr3R:24268463-24268583 1.46e-02 120 chr2L:18561113-18561233 1.23e-02 105_[+3(1.96e-05)]_7 chr3L:16984133-16984253 8.24e-02 48_[+5(7.20e-05)]_64 chr2L:12505290-12505410 4.17e-03 99_[+5(9.46e-06)]_13 chr3L:20197737-20197857 1.59e-03 29_[+3(1.96e-05)]_50_[+1(4.02e-05)]_\ 25 chr3R:21150199-21150319 6.43e-01 120 chr3R:23729805-23729925 1.52e-03 30_[+4(1.29e-05)]_82 chrX:636031-636151 5.18e-04 63_[+3(1.96e-05)]_2_[+3(7.51e-05)]_\ 39 chrX:3780377-3780497 3.76e-02 120 chr2R:6867891-6868011 7.98e-02 20_[+4(6.48e-06)]_92 chr2L:10320543-10320663 6.75e-01 120 chrX:10324539-10324659 7.54e-01 120 chr2R:22121462-22121582 3.18e-01 120 chr3R:9249514-9249634 5.97e-02 55_[+1(4.02e-05)]_57 chr3L:16682427-16682547 8.13e-02 120 chr2R:13997414-13997534 4.04e-01 120 chr3R:14398051-14398171 6.26e-01 120 chr3L:12791931-12792051 7.49e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************