******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip78C.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:8788042-8788162 1.0000 120 chr3R:23787431-23787551 1.0000 120 chr3L:10968792-10968912 1.0000 120 chr3L:1265131-1265251 1.0000 120 chr2R:23225204-23225324 1.0000 120 chr2R:21495558-21495678 1.0000 120 chr3R:14684077-14684197 1.0000 120 chr3L:13227008-13227128 1.0000 120 chr3L:21253106-21253226 1.0000 120 chrX:16765139-16765259 1.0000 120 chr3R:15627010-15627130 1.0000 120 chr2L:15459065-15459185 1.0000 120 chrX:2358337-2358457 1.0000 120 chr2R:18109677-18109797 1.0000 120 chr2R:18308308-18308428 1.0000 120 chr3L:6269138-6269258 1.0000 120 chr3R:27084821-27084941 1.0000 120 chrX:14892404-14892524 1.0000 120 chr2R:12646903-12647023 1.0000 120 chr2L:4180052-4180172 1.0000 120 chrX:15552513-15552633 1.0000 120 chr3R:11208888-11209008 1.0000 120 chrX:13116810-13116930 1.0000 120 chr2R:16812893-16813013 1.0000 120 chrX:7179414-7179534 1.0000 120 chr2R:15483035-15483155 1.0000 120 chr2R:17635169-17635289 1.0000 120 chr2R:21847822-21847942 1.0000 120 chr3R:19075274-19075394 1.0000 120 chr3L:8782122-8782242 1.0000 120 chr3L:6371509-6371629 1.0000 120 chr3R:24886631-24886751 1.0000 120 chr2R:8307893-8308013 1.0000 120 chr2L:19574591-19574711 1.0000 120 chr2L:8919789-8919909 1.0000 120 chr3R:21733089-21733209 1.0000 120 chr3L:18193780-18193900 1.0000 120 chr3L:1937623-1937743 1.0000 120 chr2R:19964407-19964527 1.0000 120 chr3L:4619972-4620092 1.0000 120 chr3L:8813624-8813744 1.0000 120 chr3R:22137051-22137171 1.0000 120 chr3L:14534763-14534883 1.0000 120 chr3R:13934741-13934861 1.0000 120 chr3L:16873165-16873285 1.0000 120 chr3R:26428345-26428465 1.0000 120 chr2L:20721582-20721702 1.0000 120 chr2R:11704656-11704776 1.0000 120 chr3L:21738551-21738671 1.0000 120 chr3R:8470699-8470819 1.0000 120 chr3L:6312356-6312476 1.0000 120 chrX:1466303-1466423 1.0000 120 chr2R:21466308-21466428 1.0000 120 chr3L:4395657-4395777 1.0000 120 chrX:12760830-12760950 1.0000 120 chr3R:31768352-31768472 1.0000 120 chr2L:9447908-9448028 1.0000 120 chr2R:19153373-19153493 1.0000 120 chr3R:14677205-14677325 1.0000 120 chr3R:14917967-14918087 1.0000 120 chr3L:16218053-16218173 1.0000 120 chr2R:9557628-9557748 1.0000 120 chr2L:19193822-19193942 1.0000 120 chr2L:14236312-14236432 1.0000 120 chr3L:15005213-15005333 1.0000 120 chr3R:21653056-21653176 1.0000 120 chr3R:28623688-28623808 1.0000 120 chr2L:14624052-14624172 1.0000 120 chr2R:8645839-8645959 1.0000 120 chr3R:20773338-20773458 1.0000 120 chr3L:6270455-6270575 1.0000 120 chr3R:17220094-17220214 1.0000 120 chr3L:3074449-3074569 1.0000 120 chr2L:19905323-19905443 1.0000 120 chr2L:14247973-14248093 1.0000 120 chr3L:21259310-21259430 1.0000 120 chr3R:6214372-6214492 1.0000 120 chr3L:22466550-22466670 1.0000 120 chr3R:31944304-31944424 1.0000 120 chr2L:3582860-3582980 1.0000 120 chrX:21073789-21073909 1.0000 120 chrX:8122952-8123072 1.0000 120 chr2L:18348766-18348886 1.0000 120 chr2R:6521254-6521374 1.0000 120 chr3L:5630288-5630408 1.0000 120 chr2L:723942-724062 1.0000 120 chr3L:16489943-16490063 1.0000 120 chr3L:14350261-14350381 1.0000 120 chr2L:6081378-6081498 1.0000 120 chr3L:18078721-18078841 1.0000 120 chr3L:13107420-13107540 1.0000 120 chr3R:14775528-14775648 1.0000 120 chr2R:24955743-24955863 1.0000 120 chr2L:7175894-7176014 1.0000 120 chr3L:10913362-10913482 1.0000 120 chr3R:29757859-29757979 1.0000 120 chr3R:5331896-5332016 1.0000 120 chrX:13568321-13568441 1.0000 120 chr3L:21080606-21080726 1.0000 120 chr2L:19156614-19156734 1.0000 120 chr2R:11048071-11048191 1.0000 120 chrX:739973-740093 1.0000 120 chr3L:2575343-2575463 1.0000 120 chr3L:21060575-21060695 1.0000 120 chr3L:14422269-14422389 1.0000 120 chr3R:15631063-15631183 1.0000 120 chr3L:13263941-13264061 1.0000 120 chr2R:14345489-14345609 1.0000 120 chr3R:6102337-6102457 1.0000 120 chr3R:11614663-11614783 1.0000 120 chr2L:19325561-19325681 1.0000 120 chr3L:21594535-21594655 1.0000 120 chr3R:4961553-4961673 1.0000 120 chr2R:24807864-24807984 1.0000 120 chr3L:166651-166771 1.0000 120 chr3L:8157224-8157344 1.0000 120 chr3R:30567323-30567443 1.0000 120 chrX:14073625-14073745 1.0000 120 chr3L:18406064-18406184 1.0000 120 chr3L:2411045-2411165 1.0000 120 chr3L:2879858-2879978 1.0000 120 chr3R:19104306-19104426 1.0000 120 chr2L:4071717-4071837 1.0000 120 chr3R:21648623-21648743 1.0000 120 chr2L:15386866-15386986 1.0000 120 chrX:9062828-9062948 1.0000 120 chr3R:13808050-13808170 1.0000 120 chr2L:8855634-8855754 1.0000 120 chrX:19878848-19878968 1.0000 120 chr3R:13806772-13806892 1.0000 120 chr3R:15425789-15425909 1.0000 120 chr2R:15745261-15745381 1.0000 120 chrX:10581632-10581752 1.0000 120 chr3L:1087464-1087584 1.0000 120 chrX:779465-779585 1.0000 120 chr3L:15258543-15258663 1.0000 120 chr3L:2549064-2549184 1.0000 120 chr3R:14390600-14390720 1.0000 120 chr3L:4690880-4691000 1.0000 120 chr3R:14498236-14498356 1.0000 120 chr2R:13461307-13461427 1.0000 120 chr3L:4707974-4708094 1.0000 120 chr3L:4545843-4545963 1.0000 120 chr2L:7897376-7897496 1.0000 120 chr2R:18157543-18157663 1.0000 120 chr3L:21042682-21042802 1.0000 120 chr2R:14975297-14975417 1.0000 120 chrX:6022246-6022366 1.0000 120 chr2R:20206684-20206804 1.0000 120 chr2R:23299478-23299598 1.0000 120 chr3R:24143950-24144070 1.0000 120 chr3R:8847398-8847518 1.0000 120 chr3L:6482974-6483094 1.0000 120 chr2L:675021-675141 1.0000 120 chr2L:1409834-1409954 1.0000 120 chr3R:20283370-20283490 1.0000 120 chr2L:20802354-20802474 1.0000 120 chr3R:29778266-29778386 1.0000 120 chr2L:7071976-7072096 1.0000 120 chr2R:7092941-7093061 1.0000 120 chrX:9068964-9069084 1.0000 120 chr3L:388273-388393 1.0000 120 chrX:3722379-3722499 1.0000 120 chr3R:5042530-5042650 1.0000 120 chr3L:2117176-2117296 1.0000 120 chr3R:27167489-27167609 1.0000 120 chr3R:29064896-29065016 1.0000 120 chr3L:21251446-21251566 1.0000 120 chr3L:16752549-16752669 1.0000 120 chr3L:16873391-16873511 1.0000 120 chr3R:15566479-15566599 1.0000 120 chr2L:14619738-14619858 1.0000 120 chr3R:14847342-14847462 1.0000 120 chr3L:21099110-21099230 1.0000 120 chr3R:24996630-24996750 1.0000 120 chr3R:21935318-21935438 1.0000 120 chr3R:19283648-19283768 1.0000 120 chr2L:7619380-7619500 1.0000 120 chr3L:9419475-9419595 1.0000 120 chr2L:382924-383044 1.0000 120 chrX:6542461-6542581 1.0000 120 chrX:19162384-19162504 1.0000 120 chr2R:11183229-11183349 1.0000 120 chrX:9651193-9651313 1.0000 120 chrX:12507703-12507823 1.0000 120 chr3L:20552035-20552155 1.0000 120 chr2L:9438368-9438488 1.0000 120 chr2L:7899322-7899442 1.0000 120 chrX:4970056-4970176 1.0000 120 chr3L:2866985-2867105 1.0000 120 chr3R:27140057-27140177 1.0000 120 chrX:4175938-4176058 1.0000 120 chr3R:31680011-31680131 1.0000 120 chr3L:10794026-10794146 1.0000 120 chr2L:11968646-11968766 1.0000 120 chr2R:20065651-20065771 1.0000 120 chr2R:9282826-9282946 1.0000 120 chr3R:13845993-13846113 1.0000 120 chr3R:8469803-8469923 1.0000 120 chr3L:15240876-15240996 1.0000 120 chr3R:20286176-20286296 1.0000 120 chr2L:2162782-2162902 1.0000 120 chr2L:646669-646789 1.0000 120 chr2L:609632-609752 1.0000 120 chrX:7892621-7892741 1.0000 120 chr2L:8271105-8271225 1.0000 120 chr2L:18517127-18517247 1.0000 120 chr2L:20381471-20381591 1.0000 120 chr2R:19985092-19985212 1.0000 120 chr3L:787777-787897 1.0000 120 chr3R:6102539-6102659 1.0000 120 chr3L:3442121-3442241 1.0000 120 chr3R:13861936-13862056 1.0000 120 chr3R:18669868-18669988 1.0000 120 chr3L:18198955-18199075 1.0000 120 chr2L:4055514-4055634 1.0000 120 chr3L:8459421-8459541 1.0000 120 chr2R:19171719-19171839 1.0000 120 chr3L:4624009-4624129 1.0000 120 chr2R:21846132-21846252 1.0000 120 chr2R:6147668-6147788 1.0000 120 chr3L:10786026-10786146 1.0000 120 chr3L:7611362-7611482 1.0000 120 chr3R:11806906-11807026 1.0000 120 chr2R:14783013-14783133 1.0000 120 chr3R:24261797-24261917 1.0000 120 chr2R:21376473-21376593 1.0000 120 chr2L:21847405-21847525 1.0000 120 chrX:19146483-19146603 1.0000 120 chr2R:20195232-20195352 1.0000 120 chr2L:7949894-7950014 1.0000 120 chr3R:31991958-31992078 1.0000 120 chr2R:19849220-19849340 1.0000 120 chr2L:5483250-5483370 1.0000 120 chrX:18834545-18834665 1.0000 120 chr3R:30805281-30805401 1.0000 120 chr3L:18241029-18241149 1.0000 120 chr3L:2533842-2533962 1.0000 120 chr2R:11033699-11033819 1.0000 120 chr3L:817832-817952 1.0000 120 chr3R:14765502-14765622 1.0000 120 chrX:5897172-5897292 1.0000 120 chr3R:31505327-31505447 1.0000 120 chr2L:15304501-15304621 1.0000 120 chr3R:15556575-15556695 1.0000 120 chrX:17571082-17571202 1.0000 120 chrX:14074302-14074422 1.0000 120 chr2L:6991239-6991359 1.0000 120 chr3R:27224877-27224997 1.0000 120 chr2R:20162658-20162778 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Eip78C/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip78C.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.343 C 0.156 G 0.156 T 0.345 Background letter frequencies (from file dataset with add-one prior applied): A 0.343 C 0.156 G 0.156 T 0.345 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KGCACTGS MEME-1 width = 8 sites = 19 llr = 185 E-value = 8.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:1:: pos.-specific C ::a:7:16 probability G 4a:::294 matrix T 6:::37:: bits 2.7 ** 2.4 ** * 2.1 ** * 1.9 ** * Relative 1.6 *** ** Entropy 1.3 **** ** (14.0 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCACTGC consensus G TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8813624-8813744 2 1.71e-06 G GGCACTGC AAGAAATTGG chr2R:20162658-20162778 47 5.48e-06 AATATTTCAC TGCACTGC TTAAATTCCG chrX:4970056-4970176 87 5.48e-06 TTGTAAACTG TGCACTGC TTGTAAACAT chrX:14073625-14073745 19 5.48e-06 TGAGCTCAAA TGCACTGC GAGAAATGCA chr2L:4180052-4180172 33 7.95e-06 GAGATAGCAA GGCACTGG GAGAAAATCT chr2L:6081378-6081498 81 9.66e-06 CGAAAATCGT TGCACGGC CGCCACGCGA chr2R:11048071-11048191 25 1.34e-05 CCCACATACG TGCACTGG GAGAAATAAT chr2R:20065651-20065771 47 1.42e-05 CCTGCTGATA GGCACGGG CATATCCCAG chr2L:7899322-7899442 108 1.42e-05 ACAGGGGTGT GGCACGGG GGTTT chrX:2358337-2358457 12 1.59e-05 TTGGCAGATA TGCACGGG AAATGGTTTG chr3R:30567323-30567443 77 1.97e-05 TCAACATAAA GGCATTGC GTGTGAATGG chr3L:2549064-2549184 37 2.80e-05 GCATCAGTGT TGCATTGC TATCTTTAAG chr3R:19104306-19104426 113 2.80e-05 ATGGATACAT TGCATTGC chr3R:29757859-29757979 96 2.80e-05 CGCTTTTATC TGCATTGC TTAAAATTTA chr3R:31944304-31944424 9 2.97e-05 CAGCAGAC GGCACAGC AAGAACTGAT chr3L:2117176-2117296 111 3.52e-05 TTTTTTCAAG TGCACAGC TT chrX:16765139-16765259 105 3.89e-05 TTTTTTCCCA GGCATTGG ACACACTG chr2L:8271105-8271225 105 5.11e-05 GACTGACTGC TGCATTGG AAGGCAAT chr2L:20802354-20802474 109 6.75e-05 GTTTTCTATC TGCACTCC AACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8813624-8813744 1.7e-06 1_[+1]_111 chr2R:20162658-20162778 5.5e-06 46_[+1]_66 chrX:4970056-4970176 5.5e-06 86_[+1]_26 chrX:14073625-14073745 5.5e-06 18_[+1]_94 chr2L:4180052-4180172 8e-06 32_[+1]_80 chr2L:6081378-6081498 9.7e-06 80_[+1]_32 chr2R:11048071-11048191 1.3e-05 24_[+1]_88 chr2R:20065651-20065771 1.4e-05 46_[+1]_66 chr2L:7899322-7899442 1.4e-05 107_[+1]_5 chrX:2358337-2358457 1.6e-05 11_[+1]_101 chr3R:30567323-30567443 2e-05 76_[+1]_36 chr3L:2549064-2549184 2.8e-05 36_[+1]_76 chr3R:19104306-19104426 2.8e-05 112_[+1] chr3R:29757859-29757979 2.8e-05 95_[+1]_17 chr3R:31944304-31944424 3e-05 8_[+1]_104 chr3L:2117176-2117296 3.5e-05 110_[+1]_2 chrX:16765139-16765259 3.9e-05 104_[+1]_8 chr2L:8271105-8271225 5.1e-05 104_[+1]_8 chr2L:20802354-20802474 6.7e-05 108_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCACTGS width=8 seqs=19 chr3L:8813624-8813744 ( 2) GGCACTGC 1 chr2R:20162658-20162778 ( 47) TGCACTGC 1 chrX:4970056-4970176 ( 87) TGCACTGC 1 chrX:14073625-14073745 ( 19) TGCACTGC 1 chr2L:4180052-4180172 ( 33) GGCACTGG 1 chr2L:6081378-6081498 ( 81) TGCACGGC 1 chr2R:11048071-11048191 ( 25) TGCACTGG 1 chr2R:20065651-20065771 ( 47) GGCACGGG 1 chr2L:7899322-7899442 ( 108) GGCACGGG 1 chrX:2358337-2358457 ( 12) TGCACGGG 1 chr3R:30567323-30567443 ( 77) GGCATTGC 1 chr3L:2549064-2549184 ( 37) TGCATTGC 1 chr3R:19104306-19104426 ( 113) TGCATTGC 1 chr3R:29757859-29757979 ( 96) TGCATTGC 1 chr3R:31944304-31944424 ( 9) GGCACAGC 1 chr3L:2117176-2117296 ( 111) TGCACAGC 1 chrX:16765139-16765259 ( 105) GGCATTGG 1 chr2L:8271105-8271225 ( 105) TGCATTGG 1 chr2L:20802354-20802474 ( 109) TGCACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 8.5e+001 -1089 -1089 124 87 -1089 -1089 268 -1089 -1089 268 -1089 -1089 154 -1089 -1089 -1089 -1089 213 -1089 -13 -170 -1089 43 99 -1089 -156 260 -1089 -1089 202 124 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 8.5e+001 0.000000 0.000000 0.368421 0.631579 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.684211 0.000000 0.315789 0.105263 0.000000 0.210526 0.684211 0.000000 0.052632 0.947368 0.000000 0.000000 0.631579 0.368421 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCACTGS MEME-1 regular expression -------------------------------------------------------------------------------- [TG]GCA[CT][TG]G[CG] -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGYAS MEME-2 width = 8 sites = 17 llr = 161 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5::::a: pos.-specific C a1:::4:5 probability G :1a:a1:5 matrix T :2:a:6:: bits 2.7 * * * 2.4 * * * 2.1 * * * 1.9 * * * Relative 1.6 * *** ** Entropy 1.3 * *** ** (13.7 bits) 1.1 * *** ** 0.8 * ****** 0.5 * ****** 0.3 * ****** 0.0 -------- Multilevel CAGTGTAG consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18193780-18193900 113 3.75e-06 ACCTTTTGAG CAGTGCAG chr3R:21733089-21733209 113 7.50e-06 ATTTTCCTCC CAGTGCAC chr3R:31991958-31992078 103 1.58e-05 TCGTTATGGT CAGTGTAG TGGCTGTTTA chrX:3722379-3722499 109 1.58e-05 CTTTTTTTGT CAGTGTAG GACT chrX:13568321-13568441 109 1.58e-05 GCTTTTCGTT CAGTGTAG AAAC chr3R:27084821-27084941 111 1.58e-05 CCTTTTATTT CAGTGTAG TT chrX:4175938-4176058 80 2.41e-05 TGACTCTTTT CAGTGTAC TTGCCACTGC chr2L:4071717-4071837 111 2.41e-05 CTATTTGTTT CAGTGTAC GC chr3R:14677205-14677325 90 2.75e-05 GATCAAGGAT CCGTGCAG GTTCTACTTT chr3R:20283370-20283490 112 3.47e-05 TTCCAAATAT CGGTGCAC T chr3L:21594535-21594655 19 3.47e-05 AAGAAATAAG CGGTGCAC TGTCCCGCTC chr2L:6991239-6991359 96 3.85e-05 ACTTTTCTCA CTGTGCAC AGTAAGTCGG chr2L:18517127-18517247 110 6.19e-05 CTGTCCCATG CTGTGTAG TTG chrX:9062828-9062948 94 6.19e-05 CGATTTCTCT CCGTGTAC TTCCGCTCCA chr3R:20773338-20773458 104 6.19e-05 AGATATTTTC CTGTGTAG CAGGTTTGG chr3R:27167489-27167609 71 7.02e-05 TTAACTTTTG CTGTGTAC AATGCAATGC chrX:5897172-5897292 9 7.40e-05 AATGGCCA CAGTGGAG GCCAGAATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18193780-18193900 3.7e-06 112_[+2] chr3R:21733089-21733209 7.5e-06 112_[+2] chr3R:31991958-31992078 1.6e-05 102_[+2]_10 chrX:3722379-3722499 1.6e-05 108_[+2]_4 chrX:13568321-13568441 1.6e-05 108_[+2]_4 chr3R:27084821-27084941 1.6e-05 110_[+2]_2 chrX:4175938-4176058 2.4e-05 79_[+2]_33 chr2L:4071717-4071837 2.4e-05 110_[+2]_2 chr3R:14677205-14677325 2.7e-05 89_[+2]_23 chr3R:20283370-20283490 3.5e-05 111_[+2]_1 chr3L:21594535-21594655 3.5e-05 18_[+2]_94 chr2L:6991239-6991359 3.8e-05 95_[+2]_17 chr2L:18517127-18517247 6.2e-05 109_[+2]_3 chrX:9062828-9062948 6.2e-05 93_[+2]_19 chr3R:20773338-20773458 6.2e-05 103_[+2]_9 chr3R:27167489-27167609 7e-05 70_[+2]_42 chrX:5897172-5897292 7.4e-05 8_[+2]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGYAS width=8 seqs=17 chr3L:18193780-18193900 ( 113) CAGTGCAG 1 chr3R:21733089-21733209 ( 113) CAGTGCAC 1 chr3R:31991958-31992078 ( 103) CAGTGTAG 1 chrX:3722379-3722499 ( 109) CAGTGTAG 1 chrX:13568321-13568441 ( 109) CAGTGTAG 1 chr3R:27084821-27084941 ( 111) CAGTGTAG 1 chrX:4175938-4176058 ( 80) CAGTGTAC 1 chr2L:4071717-4071837 ( 111) CAGTGTAC 1 chr3R:14677205-14677325 ( 90) CCGTGCAG 1 chr3R:20283370-20283490 ( 112) CGGTGCAC 1 chr3L:21594535-21594655 ( 19) CGGTGCAC 1 chr2L:6991239-6991359 ( 96) CTGTGCAC 1 chr2L:18517127-18517247 ( 110) CTGTGTAG 1 chrX:9062828-9062948 ( 94) CCGTGTAC 1 chr3R:20773338-20773458 ( 104) CTGTGTAG 1 chr3R:27167489-27167609 ( 71) CTGTGTAC 1 chrX:5897172-5897292 ( 9) CAGTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 1.9e+005 -1073 268 -1073 -1073 63 -41 -41 -55 -1073 -1073 268 -1073 -1073 -1073 -1073 153 -1073 -1073 268 -1073 -1073 118 -141 77 154 -1073 -1073 -1073 -1073 159 176 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.9e+005 0.000000 1.000000 0.000000 0.000000 0.529412 0.117647 0.117647 0.235294 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.352941 0.058824 0.588235 1.000000 0.000000 0.000000 0.000000 0.000000 0.470588 0.529412 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYAS MEME-2 regular expression -------------------------------------------------------------------------------- C[AT]GTG[TC]A[GC] -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGMASC MEME-3 width = 8 sites = 2 llr = 25 E-value = 5.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::5a:: pos.-specific C ::a:5:5a probability G aa:a::5: matrix T :::::::: bits 2.7 **** * 2.4 **** * 2.1 **** * 1.9 **** * Relative 1.6 **** *** Entropy 1.3 **** *** (17.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGAACC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:739973-740093 110 1.54e-06 AAGCCCTGTA GGCGCACC CAA chr3R:29757859-29757979 9 4.93e-06 TATGCGCA GGCGAAGC TCTTTGACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:739973-740093 1.5e-06 109_[+3]_3 chr3R:29757859-29757979 4.9e-06 8_[+3]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGMASC width=8 seqs=2 chrX:739973-740093 ( 110) GGCGCACC 1 chr3R:29757859-29757979 ( 9) GGCGAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.1e+005 -765 -765 267 -765 -765 -765 267 -765 -765 268 -765 -765 -765 -765 267 -765 54 168 -765 -765 154 -765 -765 -765 -765 168 167 -765 -765 268 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.1e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMASC MEME-3 regular expression -------------------------------------------------------------------------------- GGCG[AC]A[CG]C -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGSCTC MEME-4 width = 8 sites = 2 llr = 27 E-value = 9.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa::5a:a probability G ::aa5::: matrix T ::::::a: bits 2.7 **** * * 2.4 **** * * 2.1 **** * * 1.9 **** * * Relative 1.6 ******** Entropy 1.3 ******** (19.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGGCCTC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11968646-11968766 24 1.55e-06 CCTTTCCAAT CCGGGCTC AATAGAGCAT chr3R:11208888-11209008 110 1.55e-06 GTCTATTTAA CCGGCCTC CAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11968646-11968766 1.6e-06 23_[+4]_89 chr3R:11208888-11209008 1.6e-06 109_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGSCTC width=8 seqs=2 chr2L:11968646-11968766 ( 24) CCGGGCTC 1 chr3R:11208888-11209008 ( 110) CCGGCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.6e+004 -765 268 -765 -765 -765 268 -765 -765 -765 -765 267 -765 -765 -765 267 -765 -765 168 167 -765 -765 268 -765 -765 -765 -765 -765 153 -765 268 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGSCTC MEME-4 regular expression -------------------------------------------------------------------------------- CCGG[CG]CTC -------------------------------------------------------------------------------- Time 26.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRCCCAC MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5:::a: pos.-specific C :::aaa:a probability G aa5::::: matrix T :::::::: bits 2.7 ** *** * 2.4 ** *** * 2.1 ** *** * 1.9 ** *** * Relative 1.6 ** ***** Entropy 1.3 ** ***** (18.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGACCCAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11048071-11048191 12 7.71e-07 ACAGACTTGT GGGCCCAC ATACGTGCAC chr2L:7071976-7072096 2 2.47e-06 G GGACCCAC AGAAtataca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11048071-11048191 7.7e-07 11_[+5]_101 chr2L:7071976-7072096 2.5e-06 1_[+5]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRCCCAC width=8 seqs=2 chr2R:11048071-11048191 ( 12) GGGCCCAC 1 chr2L:7071976-7072096 ( 2) GGACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.2e+005 -765 -765 267 -765 -765 -765 267 -765 54 -765 167 -765 -765 268 -765 -765 -765 268 -765 -765 -765 268 -765 -765 154 -765 -765 -765 -765 268 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.2e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRCCCAC MEME-5 regular expression -------------------------------------------------------------------------------- GG[AG]CCCAC -------------------------------------------------------------------------------- Time 32.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8788042-8788162 9.05e-01 120 chr3R:23787431-23787551 6.89e-01 120 chr3L:10968792-10968912 4.55e-01 120 chr3L:1265131-1265251 6.53e-04 3_[+3(6.45e-05)]_109 chr2R:23225204-23225324 9.44e-01 120 chr2R:21495558-21495678 3.03e-01 120 chr3R:14684077-14684197 7.02e-01 120 chr3L:13227008-13227128 9.02e-02 120 chr3L:21253106-21253226 8.98e-01 120 chrX:16765139-16765259 2.81e-03 104_[+1(3.89e-05)]_8 chr3R:15627010-15627130 8.09e-01 120 chr2L:15459065-15459185 5.51e-01 120 chrX:2358337-2358457 2.67e-02 11_[+1(1.59e-05)]_101 chr2R:18109677-18109797 7.88e-01 120 chr2R:18308308-18308428 8.07e-01 120 chr3L:6269138-6269258 5.57e-01 120 chr3R:27084821-27084941 2.21e-01 110_[+2(1.58e-05)]_2 chrX:14892404-14892524 7.58e-01 120 chr2R:12646903-12647023 8.99e-01 120 chr2L:4180052-4180172 5.51e-03 32_[+1(7.95e-06)]_80 chrX:15552513-15552633 4.34e-01 120 chr3R:11208888-11209008 2.12e-04 109_[+4(1.55e-06)]_3 chrX:13116810-13116930 7.26e-01 120 chr2R:16812893-16813013 5.35e-01 120 chrX:7179414-7179534 2.06e-01 120 chr2R:15483035-15483155 9.97e-01 120 chr2R:17635169-17635289 6.86e-01 120 chr2R:21847822-21847942 1.91e-01 120 chr3R:19075274-19075394 9.39e-01 120 chr3L:8782122-8782242 5.54e-01 120 chr3L:6371509-6371629 9.26e-01 120 chr3R:24886631-24886751 9.99e-01 120 chr2R:8307893-8308013 1.13e-01 120 chr2L:19574591-19574711 1.48e-01 120 chr2L:8919789-8919909 7.22e-01 120 chr3R:21733089-21733209 3.03e-02 112_[+2(7.50e-06)] chr3L:18193780-18193900 4.57e-02 112_[+2(3.75e-06)] chr3L:1937623-1937743 5.63e-01 120 chr2R:19964407-19964527 2.11e-01 120 chr3L:4619972-4620092 7.24e-01 120 chr3L:8813624-8813744 1.09e-03 1_[+1(1.71e-06)]_111 chr3R:22137051-22137171 2.81e-01 120 chr3L:14534763-14534883 8.27e-01 120 chr3R:13934741-13934861 9.91e-01 120 chr3L:16873165-16873285 9.87e-01 120 chr3R:26428345-26428465 6.70e-01 120 chr2L:20721582-20721702 9.97e-01 120 chr2R:11704656-11704776 6.76e-01 120 chr3L:21738551-21738671 6.20e-01 120 chr3R:8470699-8470819 9.82e-01 120 chr3L:6312356-6312476 9.99e-01 120 chrX:1466303-1466423 3.40e-01 120 chr2R:21466308-21466428 9.20e-01 120 chr3L:4395657-4395777 9.95e-01 120 chrX:12760830-12760950 9.70e-01 120 chr3R:31768352-31768472 2.23e-01 120 chr2L:9447908-9448028 6.70e-01 120 chr2R:19153373-19153493 9.55e-01 120 chr3R:14677205-14677325 2.68e-02 89_[+2(2.75e-05)]_23 chr3R:14917967-14918087 6.72e-01 120 chr3L:16218053-16218173 6.42e-01 120 chr2R:9557628-9557748 3.76e-01 120 chr2L:19193822-19193942 8.36e-01 120 chr2L:14236312-14236432 3.91e-01 120 chr3L:15005213-15005333 7.07e-01 120 chr3R:21653056-21653176 9.98e-01 120 chr3R:28623688-28623808 2.64e-01 120 chr2L:14624052-14624172 2.95e-01 120 chr2R:8645839-8645959 9.20e-01 120 chr3R:20773338-20773458 1.00e-01 103_[+2(6.19e-05)]_9 chr3L:6270455-6270575 3.83e-02 120 chr3R:17220094-17220214 9.77e-01 120 chr3L:3074449-3074569 7.82e-01 120 chr2L:19905323-19905443 3.33e-01 120 chr2L:14247973-14248093 9.32e-01 120 chr3L:21259310-21259430 7.41e-01 120 chr3R:6214372-6214492 4.57e-01 120 chr3L:22466550-22466670 1.20e-02 120 chr3R:31944304-31944424 7.93e-03 8_[+1(2.97e-05)]_104 chr2L:3582860-3582980 9.75e-01 120 chrX:21073789-21073909 8.43e-01 120 chrX:8122952-8123072 9.80e-01 120 chr2L:18348766-18348886 9.87e-01 120 chr2R:6521254-6521374 9.10e-01 120 chr3L:5630288-5630408 4.24e-01 120 chr2L:723942-724062 2.04e-01 120 chr3L:16489943-16490063 9.51e-01 120 chr3L:14350261-14350381 1.80e-01 120 chr2L:6081378-6081498 2.55e-04 80_[+1(9.66e-06)]_32 chr3L:18078721-18078841 5.82e-01 120 chr3L:13107420-13107540 9.09e-01 120 chr3R:14775528-14775648 9.84e-01 120 chr2R:24955743-24955863 1.66e-02 107_[+3(4.93e-06)]_5 chr2L:7175894-7176014 4.61e-01 120 chr3L:10913362-10913482 9.73e-01 120 chr3R:29757859-29757979 3.49e-04 8_[+3(4.93e-06)]_79_[+1(2.80e-05)]_\ 17 chr3R:5331896-5332016 9.49e-01 120 chrX:13568321-13568441 2.03e-02 108_[+2(1.58e-05)]_4 chr3L:21080606-21080726 7.16e-01 120 chr2L:19156614-19156734 7.36e-01 120 chr2R:11048071-11048191 5.00e-06 11_[+5(7.71e-07)]_5_[+1(1.34e-05)]_\ 88 chrX:739973-740093 9.62e-05 9_[+5(8.97e-05)]_92_[+3(1.54e-06)]_\ 3 chr3L:2575343-2575463 6.31e-01 120 chr3L:21060575-21060695 8.58e-01 120 chr3L:14422269-14422389 8.75e-01 120 chr3R:15631063-15631183 3.17e-01 120 chr3L:13263941-13264061 9.99e-01 120 chr2R:14345489-14345609 1.67e-01 120 chr3R:6102337-6102457 3.24e-01 120 chr3R:11614663-11614783 1.73e-01 120 chr2L:19325561-19325681 7.62e-01 120 chr3L:21594535-21594655 7.23e-04 18_[+2(3.47e-05)]_94 chr3R:4961553-4961673 9.30e-02 120 chr2R:24807864-24807984 6.29e-01 120 chr3L:166651-166771 4.13e-02 120 chr3L:8157224-8157344 8.12e-01 120 chr3R:30567323-30567443 1.85e-02 76_[+1(1.97e-05)]_36 chrX:14073625-14073745 5.22e-03 18_[+1(5.48e-06)]_94 chr3L:18406064-18406184 9.94e-01 120 chr3L:2411045-2411165 9.75e-01 120 chr3L:2879858-2879978 7.74e-01 120 chr3R:19104306-19104426 9.53e-02 112_[+1(2.80e-05)] chr2L:4071717-4071837 3.97e-02 110_[+2(2.41e-05)]_2 chr3R:21648623-21648743 4.12e-01 120 chr2L:15386866-15386986 9.95e-01 120 chrX:9062828-9062948 7.88e-02 93_[+2(6.19e-05)]_19 chr3R:13808050-13808170 7.05e-01 120 chr2L:8855634-8855754 1.51e-01 120 chrX:19878848-19878968 3.05e-01 26_[+1(7.92e-05)]_86 chr3R:13806772-13806892 8.49e-01 120 chr3R:15425789-15425909 9.69e-01 120 chr2R:15745261-15745381 9.32e-01 120 chrX:10581632-10581752 9.35e-01 120 chr3L:1087464-1087584 9.55e-01 120 chrX:779465-779585 4.13e-01 120 chr3L:15258543-15258663 8.60e-01 120 chr3L:2549064-2549184 1.24e-02 36_[+1(2.80e-05)]_76 chr3R:14390600-14390720 3.01e-01 120 chr3L:4690880-4691000 9.51e-01 120 chr3R:14498236-14498356 6.17e-01 120 chr2R:13461307-13461427 4.39e-01 120 chr3L:4707974-4708094 5.39e-01 120 chr3L:4545843-4545963 3.91e-01 120 chr2L:7897376-7897496 6.80e-01 120 chr2R:18157543-18157663 4.44e-03 41_[+5(8.97e-05)]_71 chr3L:21042682-21042802 7.14e-01 120 chr2R:14975297-14975417 8.34e-01 120 chrX:6022246-6022366 1.47e-01 120 chr2R:20206684-20206804 6.86e-01 120 chr2R:23299478-23299598 1.71e-01 120 chr3R:24143950-24144070 2.15e-01 120 chr3R:8847398-8847518 4.18e-01 120 chr3L:6482974-6483094 7.19e-02 46_[+3(1.62e-05)]_66 chr2L:675021-675141 9.83e-01 120 chr2L:1409834-1409954 5.23e-01 120 chr3R:20283370-20283490 1.58e-02 111_[+2(3.47e-05)]_1 chr2L:20802354-20802474 8.77e-02 108_[+1(6.75e-05)]_4 chr3R:29778266-29778386 4.60e-01 120 chr2L:7071976-7072096 1.83e-02 1_[+5(2.47e-06)]_111 chr2R:7092941-7093061 9.92e-01 120 chrX:9068964-9069084 1.79e-01 120 chr3L:388273-388393 5.74e-01 120 chrX:3722379-3722499 4.96e-02 108_[+2(1.58e-05)]_4 chr3R:5042530-5042650 5.01e-01 120 chr3L:2117176-2117296 1.26e-02 110_[+1(3.52e-05)]_2 chr3R:27167489-27167609 1.51e-02 70_[+2(7.02e-05)]_42 chr3R:29064896-29065016 1.05e-02 120 chr3L:21251446-21251566 7.81e-03 120 chr3L:16752549-16752669 6.71e-01 120 chr3L:16873391-16873511 2.57e-01 120 chr3R:15566479-15566599 8.02e-01 120 chr2L:14619738-14619858 6.74e-01 120 chr3R:14847342-14847462 9.80e-02 120 chr3L:21099110-21099230 7.33e-01 120 chr3R:24996630-24996750 2.96e-02 120 chr3R:21935318-21935438 3.91e-01 120 chr3R:19283648-19283768 8.11e-02 120 chr2L:7619380-7619500 7.25e-02 120 chr3L:9419475-9419595 5.39e-01 120 chr2L:382924-383044 9.95e-01 120 chrX:6542461-6542581 9.93e-01 120 chrX:19162384-19162504 2.12e-01 120 chr2R:11183229-11183349 9.87e-01 120 chrX:9651193-9651313 2.74e-01 120 chrX:12507703-12507823 3.54e-01 120 chr3L:20552035-20552155 3.01e-01 120 chr2L:9438368-9438488 2.77e-02 120 chr2L:7899322-7899442 1.16e-02 94_[+1(5.82e-05)]_5_[+1(1.42e-05)]_\ 5 chrX:4970056-4970176 5.69e-04 86_[+1(5.48e-06)]_26 chr3L:2866985-2867105 7.07e-01 120 chr3R:27140057-27140177 6.72e-01 120 chrX:4175938-4176058 8.58e-03 79_[+2(2.41e-05)]_33 chr3R:31680011-31680131 1.92e-02 120 chr3L:10794026-10794146 9.71e-01 120 chr2L:11968646-11968766 2.01e-03 23_[+4(1.55e-06)]_89 chr2R:20065651-20065771 4.13e-03 46_[+1(1.42e-05)]_66 chr2R:9282826-9282946 2.23e-01 120 chr3R:13845993-13846113 8.16e-01 120 chr3R:8469803-8469923 3.83e-02 120 chr3L:15240876-15240996 7.14e-01 120 chr3R:20286176-20286296 6.63e-01 120 chr2L:2162782-2162902 4.26e-01 120 chr2L:646669-646789 8.83e-01 120 chr2L:609632-609752 9.36e-01 120 chrX:7892621-7892741 8.29e-01 120 chr2L:8271105-8271225 3.08e-02 104_[+1(5.11e-05)]_8 chr2L:18517127-18517247 9.68e-03 109_[+2(6.19e-05)]_3 chr2L:20381471-20381591 6.40e-02 34_[+3(6.45e-05)]_78 chr2R:19985092-19985212 1.00e+00 120 chr3L:787777-787897 9.85e-01 120 chr3R:6102539-6102659 6.72e-01 120 chr3L:3442121-3442241 8.59e-01 120 chr3R:13861936-13862056 3.92e-01 120 chr3R:18669868-18669988 2.18e-01 120 chr3L:18198955-18199075 2.39e-01 120 chr2L:4055514-4055634 9.98e-01 120 chr3L:8459421-8459541 8.03e-01 120 chr2R:19171719-19171839 9.13e-02 120 chr3L:4624009-4624129 1.54e-01 120 chr2R:21846132-21846252 8.08e-01 120 chr2R:6147668-6147788 9.99e-01 120 chr3L:10786026-10786146 9.99e-01 120 chr3L:7611362-7611482 9.99e-01 120 chr3R:11806906-11807026 4.20e-01 120 chr2R:14783013-14783133 5.24e-02 112_[+5(8.97e-05)] chr3R:24261797-24261917 9.02e-01 120 chr2R:21376473-21376593 8.76e-01 120 chr2L:21847405-21847525 5.95e-01 120 chrX:19146483-19146603 5.65e-01 120 chr2R:20195232-20195352 6.93e-01 120 chr2L:7949894-7950014 9.70e-01 120 chr3R:31991958-31992078 1.72e-02 102_[+2(1.58e-05)]_10 chr2R:19849220-19849340 6.51e-01 120 chr2L:5483250-5483370 4.63e-01 120 chrX:18834545-18834665 8.69e-01 120 chr3R:30805281-30805401 9.85e-01 120 chr3L:18241029-18241149 5.88e-01 120 chr3L:2533842-2533962 1.46e-01 120 chr2R:11033699-11033819 3.70e-01 120 chr3L:817832-817952 9.99e-01 120 chr3R:14765502-14765622 6.87e-03 87_[+3(6.45e-05)]_25 chrX:5897172-5897292 4.26e-02 8_[+2(7.40e-05)]_104 chr3R:31505327-31505447 3.42e-01 18_[+2(8.83e-05)]_94 chr2L:15304501-15304621 1.00e+00 120 chr3R:15556575-15556695 5.92e-01 120 chrX:17571082-17571202 1.10e-01 120 chrX:14074302-14074422 1.81e-01 56_[+3(6.45e-05)]_56 chr2L:6991239-6991359 6.99e-03 95_[+2(3.85e-05)]_17 chr3R:27224877-27224997 9.34e-01 120 chr2R:20162658-20162778 6.39e-03 46_[+1(5.48e-06)]_66 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************