******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip75B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:17964791-17964911 1.0000 120 chr2R:15483704-15483824 1.0000 120 chr3L:18892122-18892242 1.0000 120 chr2L:13044185-13044305 1.0000 120 chr2R:7242882-7243002 1.0000 120 chr2L:14572213-14572333 1.0000 120 chr3R:15112432-15112552 1.0000 120 chr2L:19440831-19440951 1.0000 120 chr2R:7352361-7352481 1.0000 120 chr3L:17975670-17975790 1.0000 120 chr3R:4963486-4963606 1.0000 120 chr3L:14624835-14624955 1.0000 120 chr3L:6264041-6264161 1.0000 120 chr2R:11303392-11303512 1.0000 120 chr3L:1269146-1269266 1.0000 120 chr3R:8949508-8949628 1.0000 120 chr3L:11918344-11918464 1.0000 120 chr2L:14247969-14248089 1.0000 120 chr2R:13468992-13469112 1.0000 120 chr3L:17972499-17972619 1.0000 120 chr3R:8971955-8972075 1.0000 120 chrX:15552553-15552673 1.0000 120 chr3R:13816385-13816505 1.0000 120 chr2R:21312977-21313097 1.0000 120 chr3L:17939778-17939898 1.0000 120 chr2R:8143522-8143642 1.0000 120 chr3L:5637620-5637740 1.0000 120 chr2R:15611097-15611217 1.0000 120 chr3R:14775544-14775664 1.0000 120 chr2R:14482472-14482592 1.0000 120 chr3R:8969022-8969142 1.0000 120 chr2L:4028160-4028280 1.0000 120 chr3R:8955565-8955685 1.0000 120 chr3R:25045167-25045287 1.0000 120 chr3R:31812270-31812390 1.0000 120 chr2R:18308320-18308440 1.0000 120 chr2R:13473963-13474083 1.0000 120 chrX:5300999-5301119 1.0000 120 chr3R:24768049-24768169 1.0000 120 chr3L:16218110-16218230 1.0000 120 chr3R:22158490-22158610 1.0000 120 chr3L:21918748-21918868 1.0000 120 chr3R:19074383-19074503 1.0000 120 chr3L:4719882-4720002 1.0000 120 chr3R:29762365-29762485 1.0000 120 chr2L:5507950-5508070 1.0000 120 chr3L:15258530-15258650 1.0000 120 chr3R:22357156-22357276 1.0000 120 chr3L:18754010-18754130 1.0000 120 chrX:1627762-1627882 1.0000 120 chr3L:18198869-18198989 1.0000 120 chrX:17678010-17678130 1.0000 120 chrX:9651188-9651308 1.0000 120 chr3R:17705934-17706054 1.0000 120 chr3L:6371533-6371653 1.0000 120 chr3L:13107400-13107520 1.0000 120 chrX:21368489-21368609 1.0000 120 chrX:4175931-4176051 1.0000 120 chr3R:8847390-8847510 1.0000 120 chr3R:26496482-26496602 1.0000 120 chr3R:20773308-20773428 1.0000 120 chr3L:19699734-19699854 1.0000 120 chrX:1614385-1614505 1.0000 120 chr2R:13934459-13934579 1.0000 120 chr2L:5295014-5295134 1.0000 120 chr3R:11859708-11859828 1.0000 120 chr3L:12058551-12058671 1.0000 120 chr3R:6812493-6812613 1.0000 120 chr2L:10791492-10791612 1.0000 120 chr2L:646661-646781 1.0000 120 chr3L:18800245-18800365 1.0000 120 chr2R:9711476-9711596 1.0000 120 chr3L:4731812-4731932 1.0000 120 chr2R:15100622-15100742 1.0000 120 chr3R:14684076-14684196 1.0000 120 chr2R:15513543-15513663 1.0000 120 chrX:12760830-12760950 1.0000 120 chr2L:18628240-18628360 1.0000 120 chr2R:11048087-11048207 1.0000 120 chr2R:19578835-19578955 1.0000 120 chrX:3867145-3867265 1.0000 120 chr2L:1887878-1887998 1.0000 120 chr2L:3004745-3004865 1.0000 120 chr2L:14236293-14236413 1.0000 120 chr3R:9966231-9966351 1.0000 120 chr3L:18013323-18013443 1.0000 120 chr2R:18923640-18923760 1.0000 120 chr3L:21738831-21738951 1.0000 120 chrX:1970762-1970882 1.0000 120 chr2L:15275899-15276019 1.0000 120 chr2L:3582837-3582957 1.0000 120 chr3L:15180970-15181090 1.0000 120 chr2R:14082335-14082455 1.0000 120 chrX:9656406-9656526 1.0000 120 chr2R:11324032-11324152 1.0000 120 chr3L:17577733-17577853 1.0000 120 chr3R:14765491-14765611 1.0000 120 chr3R:13806766-13806886 1.0000 120 chr2R:13469200-13469320 1.0000 120 chr3R:7122662-7122782 1.0000 120 chr3R:24218694-24218814 1.0000 120 chr3R:9872407-9872527 1.0000 120 chr3R:30689766-30689886 1.0000 120 chr3L:4619951-4620071 1.0000 120 chr2R:13478466-13478586 1.0000 120 chr3L:15005203-15005323 1.0000 120 chr3L:1167061-1167181 1.0000 120 chr3R:5363616-5363736 1.0000 120 chr3R:26859338-26859458 1.0000 120 chr2L:15385499-15385619 1.0000 120 chrX:17542878-17542998 1.0000 120 chrX:16086249-16086369 1.0000 120 chr3R:21653049-21653169 1.0000 120 chr2R:18926660-18926780 1.0000 120 chr3L:10928860-10928980 1.0000 120 chr3R:20283357-20283477 1.0000 120 chr3R:18469591-18469711 1.0000 120 chrX:1826255-1826375 1.0000 120 chr3R:21935327-21935447 1.0000 120 chr3L:2386563-2386683 1.0000 120 chr3R:4687365-4687485 1.0000 120 chr2R:17436969-17437089 1.0000 120 chrX:6027984-6028104 1.0000 120 chr2L:6991211-6991331 1.0000 120 chr3R:27186345-27186465 1.0000 120 chr2R:6122176-6122296 1.0000 120 chr2L:7971553-7971673 1.0000 120 chr3L:1320629-1320749 1.0000 120 chr2L:382951-383071 1.0000 120 chr2L:7611699-7611819 1.0000 120 chr3R:22184220-22184340 1.0000 120 chr3L:10913390-10913510 1.0000 120 chr3L:20552027-20552147 1.0000 120 chr2R:13461317-13461437 1.0000 120 chr2R:8307926-8308046 1.0000 120 chr2R:15740772-15740892 1.0000 120 chr3L:785850-785970 1.0000 120 chr2R:18314482-18314602 1.0000 120 chr2R:11033711-11033831 1.0000 120 chr3L:21894980-21895100 1.0000 120 chr2L:16594016-16594136 1.0000 120 chr2L:9448863-9448983 1.0000 120 chr2R:19849221-19849341 1.0000 120 chr2R:19985131-19985251 1.0000 120 chr2R:12741613-12741733 1.0000 120 chr2R:7241741-7241861 1.0000 120 chr2R:19153427-19153547 1.0000 120 chr3R:9913601-9913721 1.0000 120 chr3L:16873187-16873307 1.0000 120 chr3L:166661-166781 1.0000 120 chrX:3289482-3289602 1.0000 120 chr2L:21244143-21244263 1.0000 120 chr3R:14449434-14449554 1.0000 120 chr2R:18907095-18907215 1.0000 120 chr2L:19193821-19193941 1.0000 120 chr3R:5331954-5332074 1.0000 120 chrX:6642994-6643114 1.0000 120 chr2L:2162763-2162883 1.0000 120 chr3L:17967322-17967442 1.0000 120 chr3R:30076203-30076323 1.0000 120 chr2L:19905344-19905464 1.0000 120 chr2L:12013975-12014095 1.0000 120 chr2L:4211414-4211534 1.0000 120 chrX:3380305-3380425 1.0000 120 chr2R:10771971-10772091 1.0000 120 chr2L:15392551-15392671 1.0000 120 chr2R:18271186-18271306 1.0000 120 chrX:14897748-14897868 1.0000 120 chr2L:4071737-4071857 1.0000 120 chr3R:27140052-27140172 1.0000 120 chr3L:4383206-4383326 1.0000 120 chr3L:8870654-8870774 1.0000 120 chr3R:23147772-23147892 1.0000 120 chr3R:30789485-30789605 1.0000 120 chr3R:29778357-29778477 1.0000 120 chr2L:2931855-2931975 1.0000 120 chr3R:16119590-16119710 1.0000 120 chr3R:31505311-31505431 1.0000 120 chr3L:16752556-16752676 1.0000 120 chr3R:10588825-10588945 1.0000 120 chrX:22479513-22479633 1.0000 120 chr3L:4545807-4545927 1.0000 120 chr2R:21569743-21569863 1.0000 120 chr2L:18523124-18523244 1.0000 120 chr3L:21738561-21738681 1.0000 120 chr2R:24955779-24955899 1.0000 120 chr2R:12012837-12012957 1.0000 120 chr2L:18341046-18341166 1.0000 120 chr3L:16873390-16873510 1.0000 120 chr2R:23299450-23299570 1.0000 120 chr3R:24261795-24261915 1.0000 120 chr3R:29841617-29841737 1.0000 120 chr2L:7897378-7897498 1.0000 120 chr2L:18645606-18645726 1.0000 120 chr2R:21851703-21851823 1.0000 120 chr2L:609660-609780 1.0000 120 chr3L:736108-736228 1.0000 120 chr3R:7171876-7171996 1.0000 120 chr2L:7071906-7072026 1.0000 120 chrX:12015157-12015277 1.0000 120 chr3L:17563845-17563965 1.0000 120 chr2R:18343060-18343180 1.0000 120 chr3L:2471173-2471293 1.0000 120 chr3R:15596036-15596156 1.0000 120 chr3L:10387409-10387529 1.0000 120 chr3R:10530666-10530786 1.0000 120 chr2R:6144832-6144952 1.0000 120 chr2L:2956513-2956633 1.0000 120 chr3L:7113165-7113285 1.0000 120 chr2R:12013469-12013589 1.0000 120 chr2R:20206681-20206801 1.0000 120 chr3R:31700365-31700485 1.0000 120 chr2R:10228081-10228201 1.0000 120 chrX:17571093-17571213 1.0000 120 chr2R:11094352-11094472 1.0000 120 chr3L:4722027-4722147 1.0000 120 chrX:12677178-12677298 1.0000 120 chr2L:20381485-20381605 1.0000 120 chr2R:12535312-12535432 1.0000 120 chr2R:21846092-21846212 1.0000 120 chr2L:5483193-5483313 1.0000 120 chr3R:22025476-22025596 1.0000 120 chrX:19145168-19145288 1.0000 120 chr3R:31225141-31225261 1.0000 120 chr2R:19647754-19647874 1.0000 120 chr2L:675038-675158 1.0000 120 chr3R:28633910-28634030 1.0000 120 chr3L:5633698-5633818 1.0000 120 chr2R:9691807-9691927 1.0000 120 chr3L:6359371-6359491 1.0000 120 chr2L:12602304-12602424 1.0000 120 chr3R:22194838-22194958 1.0000 120 chr3L:18241035-18241155 1.0000 120 chr2R:20646265-20646385 1.0000 120 chr2L:18648351-18648471 1.0000 120 chr3R:29300146-29300266 1.0000 120 chrX:7177260-7177380 1.0000 120 chr3L:9381806-9381926 1.0000 120 chr3R:4873883-4874003 1.0000 120 chr3L:3513167-3513287 1.0000 120 chr2R:11515884-11516004 1.0000 120 chr2L:608310-608430 1.0000 120 chr3L:20989026-20989146 1.0000 120 chr3R:8922963-8923083 1.0000 120 chr3R:31329968-31330088 1.0000 120 chr2L:3781527-3781647 1.0000 120 chrX:7544024-7544144 1.0000 120 chr3R:9934959-9935079 1.0000 120 chr2L:10677498-10677618 1.0000 120 chr3L:2808448-2808568 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Eip75B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip75B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.324 C 0.175 G 0.178 T 0.323 Background letter frequencies (from file dataset with add-one prior applied): A 0.324 C 0.175 G 0.179 T 0.323 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KCWGCTGC MEME-1 width = 8 sites = 25 llr = 231 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::4:13:: pos.-specific C :81:9::a probability G 62:a::a: matrix T 4:5::7:: bits 2.5 * * 2.3 * ** 2.0 ** ** 1.8 * ** ** Relative 1.5 * ** ** Entropy 1.3 ** ** ** (13.3 bits) 1.0 ** ** ** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCTGCTGC consensus TGA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17563845-17563965 42 3.21e-06 CATTGGCgct gctgctgc tgctgttgct chr3R:29841617-29841737 11 3.21e-06 ACTTGTTGCC GCTGCTGC GCGAGACAGG chr2L:12013975-12014095 47 3.21e-06 tgctgcgttt gctgctgc tCCCAGCAGG chr3L:17967322-17967442 14 3.21e-06 cgactgcgct gctgctgc gctgcCAATG chr3L:17577733-17577853 104 3.21e-06 AGCGGACGTC GCTGCTGC AATCGACAC chr3L:18754010-18754130 27 3.21e-06 AGCGAGAGAC GCTGCTGC TTGGCTGACT chr2R:15611097-15611217 64 1.14e-05 CCTTTTTACC GCTGCAGC GTTGCAGCGC chr2L:13044185-13044305 46 1.14e-05 TCGCCGAGGC gctgcagc agcagcagca chr3L:166661-166781 89 1.46e-05 GAAGCGGGAG GCAGCAGC ATGGCTCTTT chr3L:17964791-17964911 30 1.46e-05 GGTGCCCCAA GCAGCAGC AGTTTGAAAC chr3R:27186345-27186465 38 2.04e-05 GACTGCAAGT TCTGCTGC ACTCGAAAAA chr3L:11918344-11918464 68 2.04e-05 CCCGATATTT TCTGCTGC ATACTTTGCT chr3R:24218694-24218814 82 2.62e-05 CAGACTGAAG TCAGCTGC TAACGCGATC chr3L:17972499-17972619 66 3.45e-05 CTTCGAATGT GGAGCTGC GAGAGAGAGT chr3R:8949508-8949628 74 4.34e-05 ACATTTCAAA TCCGCTGC GGTTCTCTGT chr3R:23147772-23147892 23 4.93e-05 ATTTTTGTGC TCAGCAGC CTTCGTTTCC chr3R:24768049-24768169 24 4.93e-05 tctGTTGACG TCAGCAGC GACTGCGGTG chr3R:15112432-15112552 82 4.93e-05 accatcatga tcagcagc atggttgttg chr2L:20381485-20381605 79 6.36e-05 TTGCTGCTTA TGTGCTGC TTACAAGGCA chr3R:20773308-20773428 37 7.26e-05 AAAAAAAATC TGAGCTGC AAAATATATA chr3R:8955565-8955685 7 7.44e-05 TAAGCA GGCGCAGC TAAGCGTGGC chr2R:18343060-18343180 89 8.04e-05 TCAGTGTAAT GCTGATGC ATATCTGAAA chrX:3380305-3380425 19 9.87e-05 GATCAGATAA GCAGATGC TTATTATTAT chr3R:4963486-4963606 67 9.87e-05 GTCGTCCCTT TGCGCTGC TCGGTCGGTT chr3R:5363616-5363736 36 1.08e-04 CGAGTTGCGT GCAGCTGG CGACCTTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17563845-17563965 3.2e-06 41_[+1]_71 chr3R:29841617-29841737 3.2e-06 10_[+1]_102 chr2L:12013975-12014095 3.2e-06 46_[+1]_66 chr3L:17967322-17967442 3.2e-06 13_[+1]_99 chr3L:17577733-17577853 3.2e-06 103_[+1]_9 chr3L:18754010-18754130 3.2e-06 26_[+1]_86 chr2R:15611097-15611217 1.1e-05 63_[+1]_49 chr2L:13044185-13044305 1.1e-05 45_[+1]_67 chr3L:166661-166781 1.5e-05 88_[+1]_24 chr3L:17964791-17964911 1.5e-05 29_[+1]_83 chr3R:27186345-27186465 2e-05 37_[+1]_75 chr3L:11918344-11918464 2e-05 67_[+1]_45 chr3R:24218694-24218814 2.6e-05 81_[+1]_31 chr3L:17972499-17972619 3.5e-05 65_[+1]_47 chr3R:8949508-8949628 4.3e-05 73_[+1]_39 chr3R:23147772-23147892 4.9e-05 22_[+1]_90 chr3R:24768049-24768169 4.9e-05 23_[+1]_89 chr3R:15112432-15112552 4.9e-05 81_[+1]_31 chr2L:20381485-20381605 6.4e-05 78_[+1]_34 chr3R:20773308-20773428 7.3e-05 36_[+1]_76 chr3R:8955565-8955685 7.4e-05 6_[+1]_106 chr2R:18343060-18343180 8e-05 88_[+1]_24 chrX:3380305-3380425 9.9e-05 18_[+1]_94 chr3R:4963486-4963606 9.9e-05 66_[+1]_46 chr3R:5363616-5363736 0.00011 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCWGCTGC width=8 seqs=25 chr3L:17563845-17563965 ( 42) GCTGCTGC 1 chr3R:29841617-29841737 ( 11) GCTGCTGC 1 chr2L:12013975-12014095 ( 47) GCTGCTGC 1 chr3L:17967322-17967442 ( 14) GCTGCTGC 1 chr3L:17577733-17577853 ( 104) GCTGCTGC 1 chr3L:18754010-18754130 ( 27) GCTGCTGC 1 chr2R:15611097-15611217 ( 64) GCTGCAGC 1 chr2L:13044185-13044305 ( 46) GCTGCAGC 1 chr3L:166661-166781 ( 89) GCAGCAGC 1 chr3L:17964791-17964911 ( 30) GCAGCAGC 1 chr3R:27186345-27186465 ( 38) TCTGCTGC 1 chr3L:11918344-11918464 ( 68) TCTGCTGC 1 chr3R:24218694-24218814 ( 82) TCAGCTGC 1 chr3L:17972499-17972619 ( 66) GGAGCTGC 1 chr3R:8949508-8949628 ( 74) TCCGCTGC 1 chr3R:23147772-23147892 ( 23) TCAGCAGC 1 chr3R:24768049-24768169 ( 24) TCAGCAGC 1 chr3R:15112432-15112552 ( 82) TCAGCAGC 1 chr2L:20381485-20381605 ( 79) TGTGCTGC 1 chr3R:20773308-20773428 ( 37) TGAGCTGC 1 chr3R:8955565-8955685 ( 7) GGCGCAGC 1 chr2R:18343060-18343180 ( 89) GCTGATGC 1 chrX:3380305-3380425 ( 19) GCAGATGC 1 chr3R:4963486-4963606 ( 67) TGCGCTGC 1 chr3R:5363616-5363736 ( 36) GCAGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 1.5e+000 -1129 -1129 175 31 -1129 219 16 -1129 30 -54 -1129 57 -1129 -1129 249 -1129 -202 240 -1129 -1129 -2 -1129 -1129 107 -1129 -1129 249 -1129 -1129 246 -216 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.5e+000 0.000000 0.000000 0.600000 0.400000 0.000000 0.800000 0.200000 0.000000 0.400000 0.120000 0.000000 0.480000 0.000000 0.000000 1.000000 0.000000 0.080000 0.920000 0.000000 0.000000 0.320000 0.000000 0.000000 0.680000 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.040000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWGCTGC MEME-1 regular expression -------------------------------------------------------------------------------- [GT][CG][TA]GC[TA]GC -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCKCCC MEME-2 width = 8 sites = 12 llr = 125 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::::2 pos.-specific C aa97:898 probability G :::3521: matrix T :::15::: bits 2.5 ** 2.3 ** 2.0 *** * 1.8 *** *** Relative 1.5 *** *** Entropy 1.3 **** *** (15.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCGCCC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10228081-10228201 68 9.00e-07 TGCCCCAAGC CCCCGCCC CGCTGCCACC chrX:1970762-1970882 7 2.52e-06 GTTCAT CCCCTCCC TCTCTTGCTC chr2R:14482472-14482592 90 2.52e-06 CCTTCGCGTT CCCCTCCC CCCCTCTTCC chr2R:15611097-15611217 47 3.44e-06 GCCCCCATTT CCCGGCCC CTTTTTACCG chr2R:19578835-19578955 69 5.10e-06 TGCAAGATCT CCCGTCCC TTCTGCAAGT chr3L:19699734-19699854 51 7.69e-06 GAATGCTAAG CCCCGCCA AAAATATATA chr3L:17972499-17972619 19 7.69e-06 GTTCAACGAA CCCCGCCA TTGTCGTGAC chr2R:9711476-9711596 43 9.35e-06 CCCCAAATGC CCCCTGCC ACTTCCCTCC chr3R:7122662-7122782 37 1.29e-05 GAAAATGCAG CCCTGCCC CGAATCCAAT chr2R:18271186-18271306 45 1.92e-05 TAGCTTTAAA CCCCTCGC TTCAAATGCA chr3L:1269146-1269266 41 1.92e-05 GAGCCGCATT CCACGCCC CACAAAACGG chr3L:17964791-17964911 11 2.56e-05 ACTGCAAGCC CCCGTGCC CGGTGCCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10228081-10228201 9e-07 67_[+2]_45 chrX:1970762-1970882 2.5e-06 6_[+2]_106 chr2R:14482472-14482592 2.5e-06 89_[+2]_23 chr2R:15611097-15611217 3.4e-06 46_[+2]_66 chr2R:19578835-19578955 5.1e-06 68_[+2]_44 chr3L:19699734-19699854 7.7e-06 50_[+2]_62 chr3L:17972499-17972619 7.7e-06 18_[+2]_94 chr2R:9711476-9711596 9.4e-06 42_[+2]_70 chr3R:7122662-7122782 1.3e-05 36_[+2]_76 chr2R:18271186-18271306 1.9e-05 44_[+2]_68 chr3L:1269146-1269266 1.9e-05 40_[+2]_72 chr3L:17964791-17964911 2.6e-05 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCKCCC width=8 seqs=12 chr2R:10228081-10228201 ( 68) CCCCGCCC 1 chrX:1970762-1970882 ( 7) CCCCTCCC 1 chr2R:14482472-14482592 ( 90) CCCCTCCC 1 chr2R:15611097-15611217 ( 47) CCCGGCCC 1 chr2R:19578835-19578955 ( 69) CCCGTCCC 1 chr3L:19699734-19699854 ( 51) CCCCGCCA 1 chr3L:17972499-17972619 ( 19) CCCCGCCA 1 chr2R:9711476-9711596 ( 43) CCCCTGCC 1 chr3R:7122662-7122782 ( 37) CCCTGCCC 1 chr2R:18271186-18271306 ( 45) CCCCTCGC 1 chr3L:1269146-1269266 ( 41) CCACGCCC 1 chr3L:17964791-17964911 ( 11) CCCGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.3e+002 -1023 252 -1023 -1023 -1023 252 -1023 -1023 -196 239 -1023 -1023 -1023 193 49 -195 -1023 -1023 149 63 -1023 225 -10 -1023 -1023 239 -110 -1023 -96 225 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.3e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 0.666667 0.250000 0.083333 0.000000 0.000000 0.500000 0.500000 0.000000 0.833333 0.166667 0.000000 0.000000 0.916667 0.083333 0.000000 0.166667 0.833333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCKCCC MEME-2 regular expression -------------------------------------------------------------------------------- CCC[CG][GT]CCC -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTSHSCC MEME-3 width = 8 sites = 15 llr = 148 E-value = 7.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :3:436aa probability G a7:6:4:: matrix T ::a:3::: bits 2.5 * ** 2.3 * ** 2.0 * ** 1.8 ** ** Relative 1.5 **** *** Entropy 1.3 **** *** (14.2 bits) 1.0 **** *** 0.8 **** *** 0.5 **** *** 0.3 ******** 0.0 -------- Multilevel GGTGACCC consensus C CCG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9711476-9711596 29 1.74e-06 GAAAAGAATT GGTGCCCC AAATGCCCCC chr3L:17964791-17964911 20 1.74e-06 CCCCGTGCCC GGTGCCCC AAGCAGCAGC chr2R:15483704-15483824 78 5.21e-06 GCTATATTGC GGTCCCCC TTGTTTTTTT chr3L:17967322-17967442 31 1.16e-05 cgctgcCAAT GGTGACCC AGTTTCGCTG chr3L:6264041-6264161 84 1.16e-05 TGTCGGCGAG GGTGACCC ACTTTTTGAA chr2R:10228081-10228201 56 2.79e-05 TCTTCAGTTC GCTGCCCC AAGCCCCCGC chr2R:19578835-19578955 37 2.79e-05 GGGGGAGGAG GGTGTGCC TCTTGGCCAA chr3L:18800245-18800365 109 2.79e-05 agccgtagct ggtctccc tctc chr3L:1269146-1269266 28 2.79e-05 TCTTCTTCAA GGTGAGCC GCATTCCACG chrX:1970762-1970882 56 3.77e-05 TGAAAAATTG GGTCAGCC ATTGAACCCG chr2R:14482472-14482592 68 3.77e-05 GTTTATTTTT GGTCTGCC CGCTCCTTCG chr3L:17972499-17972619 46 3.77e-05 CCCACATTTC GGTCAGCC ACCTTCGAAT chr2L:13044185-13044305 6 3.77e-05 GCTGC GCTGCGCC GCTCTGCCGA chr2R:6144832-6144952 48 4.40e-05 CCCAACACCC GCTGTCCC CTGCTCATGC chr2R:6122176-6122296 51 5.83e-05 CATTCCTTCA GCTCTCCC TTTTCCGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9711476-9711596 1.7e-06 28_[+3]_84 chr3L:17964791-17964911 1.7e-06 19_[+3]_93 chr2R:15483704-15483824 5.2e-06 77_[+3]_35 chr3L:17967322-17967442 1.2e-05 30_[+3]_82 chr3L:6264041-6264161 1.2e-05 83_[+3]_29 chr2R:10228081-10228201 2.8e-05 55_[+3]_57 chr2R:19578835-19578955 2.8e-05 36_[+3]_76 chr3L:18800245-18800365 2.8e-05 108_[+3]_4 chr3L:1269146-1269266 2.8e-05 27_[+3]_85 chrX:1970762-1970882 3.8e-05 55_[+3]_57 chr2R:14482472-14482592 3.8e-05 67_[+3]_45 chr3L:17972499-17972619 3.8e-05 45_[+3]_67 chr2L:13044185-13044305 3.8e-05 5_[+3]_107 chr2R:6144832-6144952 4.4e-05 47_[+3]_65 chr2R:6122176-6122296 5.8e-05 50_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTSHSCC width=8 seqs=15 chr2R:9711476-9711596 ( 29) GGTGCCCC 1 chr3L:17964791-17964911 ( 20) GGTGCCCC 1 chr2R:15483704-15483824 ( 78) GGTCCCCC 1 chr3L:17967322-17967442 ( 31) GGTGACCC 1 chr3L:6264041-6264161 ( 84) GGTGACCC 1 chr2R:10228081-10228201 ( 56) GCTGCCCC 1 chr2R:19578835-19578955 ( 37) GGTGTGCC 1 chr3L:18800245-18800365 ( 109) GGTCTCCC 1 chr3L:1269146-1269266 ( 28) GGTGAGCC 1 chrX:1970762-1970882 ( 56) GGTCAGCC 1 chr2R:14482472-14482592 ( 68) GGTCTGCC 1 chr3L:17972499-17972619 ( 46) GGTCAGCC 1 chr2L:13044185-13044305 ( 6) GCTGCGCC 1 chr2R:6144832-6144952 ( 48) GCTGTCCC 1 chr2R:6122176-6122296 ( 51) GCTCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 7.9e+003 -1055 -1055 249 -1055 -1055 61 204 -1055 -1055 -1055 -1055 163 -1055 119 175 -1055 4 93 -1055 5 -1055 178 116 -1055 -1055 252 -1055 -1055 -1055 252 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 7.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.733333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.600000 0.000000 0.333333 0.333333 0.000000 0.333333 0.000000 0.600000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSHSCC MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]T[GC][ACT][CG]CC -------------------------------------------------------------------------------- Time 20.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGRCGTC MEME-4 width = 8 sites = 5 llr = 61 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::6:::: pos.-specific C aa::a::a probability G ::a4:a:: matrix T ::::::a: bits 2.5 *** ** * 2.3 *** ** * 2.0 *** ** * 1.8 *** ** * Relative 1.5 *** **** Entropy 1.3 *** **** (17.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGACGTC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9381806-9381926 75 1.74e-06 TTTCGTGCAA CCGGCGTC AGTTGAATTC chr3L:18754010-18754130 113 1.74e-06 GCACATTCTG CCGGCGTC chr3R:27186345-27186465 8 4.88e-06 GCGCATG CCGACGTC GATGTCAACG chr2R:15611097-15611217 28 4.88e-06 GTTGTCTGGC CCGACGTC CGCCCCCATT chr2L:13044185-13044305 20 4.88e-06 CGCCGCTCTG CCGACGTC GACTGTGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9381806-9381926 1.7e-06 74_[+4]_38 chr3L:18754010-18754130 1.7e-06 112_[+4] chr3R:27186345-27186465 4.9e-06 7_[+4]_105 chr2R:15611097-15611217 4.9e-06 27_[+4]_85 chr2L:13044185-13044305 4.9e-06 19_[+4]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGRCGTC width=8 seqs=5 chr3L:9381806-9381926 ( 75) CCGGCGTC 1 chr3L:18754010-18754130 ( 113) CCGGCGTC 1 chr3R:27186345-27186465 ( 8) CCGACGTC 1 chr2R:15611097-15611217 ( 28) CCGACGTC 1 chr2L:13044185-13044305 ( 20) CCGACGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 4.6e+003 -897 251 -897 -897 -897 251 -897 -897 -897 -897 248 -897 89 -897 116 -897 -897 251 -897 -897 -897 -897 248 -897 -897 -897 -897 163 -897 251 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGRCGTC MEME-4 regular expression -------------------------------------------------------------------------------- CCG[AG]CGTC -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTGGCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a:::aa probability G :a::aa:: matrix T :::a:::: bits 2.5 *** **** 2.3 *** **** 2.0 *** **** 1.8 *** **** Relative 1.5 ******** Entropy 1.3 ******** (19.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2808448-2808568 95 1.74e-06 GCGCTTTGTT CGCTGGCC AGAAGAGCAC chrX:3380305-3380425 100 1.74e-06 TGACCTATTT CGCTGGCC GTTGGTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2808448-2808568 1.7e-06 94_[+5]_18 chrX:3380305-3380425 1.7e-06 99_[+5]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTGGCC width=8 seqs=2 chr3L:2808448-2808568 ( 95) CGCTGGCC 1 chrX:3380305-3380425 ( 100) CGCTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.6e+004 -765 251 -765 -765 -765 -765 248 -765 -765 251 -765 -765 -765 -765 -765 163 -765 -765 248 -765 -765 -765 248 -765 -765 251 -765 -765 -765 251 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGGCC MEME-5 regular expression -------------------------------------------------------------------------------- CGCTGGCC -------------------------------------------------------------------------------- Time 32.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17964791-17964911 4.49e-08 10_[+2(2.56e-05)]_1_[+3(1.74e-06)]_\ 2_[+1(1.46e-05)]_21_[+3(6.46e-05)]_54 chr2R:15483704-15483824 8.35e-03 77_[+3(5.21e-06)]_35 chr3L:18892122-18892242 6.83e-01 120 chr2L:13044185-13044305 8.60e-07 5_[+3(3.77e-05)]_6_[+4(4.88e-06)]_\ 18_[+1(1.14e-05)]_1_[+1(1.46e-05)]_36_[+1(1.46e-05)]_1_[+1(1.46e-05)]_5 chr2R:7242882-7243002 3.97e-01 120 chr2L:14572213-14572333 8.06e-01 120 chr3R:15112432-15112552 2.09e-03 81_[+1(4.93e-05)]_31 chr2L:19440831-19440951 3.21e-01 120 chr2R:7352361-7352481 8.73e-02 120 chr3L:17975670-17975790 5.04e-01 120 chr3R:4963486-4963606 6.60e-04 66_[+1(9.87e-05)]_46 chr3L:14624835-14624955 2.94e-02 101_[+5(6.21e-05)]_11 chr3L:6264041-6264161 1.81e-02 83_[+3(1.16e-05)]_29 chr2R:11303392-11303512 1.72e-01 120 chr3L:1269146-1269266 8.98e-05 27_[+3(2.79e-05)]_5_[+2(1.92e-05)]_\ 72 chr3R:8949508-8949628 5.33e-02 73_[+1(4.34e-05)]_39 chr3L:11918344-11918464 2.18e-03 51_[+3(9.43e-05)]_8_[+1(2.04e-05)]_\ 45 chr2L:14247969-14248089 4.91e-01 120 chr2R:13468992-13469112 4.97e-01 120 chr3L:17972499-17972619 2.51e-05 18_[+2(7.69e-06)]_19_[+3(3.77e-05)]_\ 12_[+1(3.45e-05)]_47 chr3R:8971955-8972075 1.54e-02 107_[+5(6.21e-05)]_5 chrX:15552553-15552673 9.51e-01 120 chr3R:13816385-13816505 9.89e-01 120 chr2R:21312977-21313097 8.45e-02 120 chr3L:17939778-17939898 2.01e-01 120 chr2R:8143522-8143642 9.49e-01 120 chr3L:5637620-5637740 9.47e-01 120 chr2R:15611097-15611217 1.14e-08 27_[+4(4.88e-06)]_11_[+2(3.44e-06)]_\ 9_[+1(1.14e-05)]_49 chr3R:14775544-14775664 1.00e+00 120 chr2R:14482472-14482592 3.05e-04 67_[+3(3.77e-05)]_14_[+2(2.52e-06)]_\ 23 chr3R:8969022-8969142 1.00e+00 120 chr2L:4028160-4028280 9.85e-01 120 chr3R:8955565-8955685 1.87e-02 6_[+1(7.44e-05)]_106 chr3R:25045167-25045287 7.13e-01 120 chr3R:31812270-31812390 6.07e-01 120 chr2R:18308320-18308440 9.79e-01 120 chr2R:13473963-13474083 1.00e+00 120 chrX:5300999-5301119 6.76e-01 120 chr3R:24768049-24768169 3.12e-02 23_[+1(4.93e-05)]_89 chr3L:16218110-16218230 9.90e-01 120 chr3R:22158490-22158610 1.00e+00 120 chr3L:21918748-21918868 9.97e-01 120 chr3R:19074383-19074503 1.84e-01 120 chr3L:4719882-4720002 4.97e-02 120 chr3R:29762365-29762485 1.95e-02 120 chr2L:5507950-5508070 8.72e-01 120 chr3L:15258530-15258650 1.00e+00 120 chr3R:22357156-22357276 7.04e-02 120 chr3L:18754010-18754130 6.19e-06 26_[+1(3.21e-06)]_78_[+4(1.74e-06)] chrX:1627762-1627882 4.20e-01 120 chr3L:18198869-18198989 9.92e-01 120 chrX:17678010-17678130 9.58e-01 120 chrX:9651188-9651308 5.63e-01 120 chr3R:17705934-17706054 1.87e-01 120 chr3L:6371533-6371653 8.06e-01 120 chr3L:13107400-13107520 9.65e-01 120 chrX:21368489-21368609 4.52e-02 120 chrX:4175931-4176051 3.52e-01 120 chr3R:8847390-8847510 1.26e-01 120 chr3R:26496482-26496602 1.00e+00 120 chr3R:20773308-20773428 1.50e-01 36_[+1(7.26e-05)]_76 chr3L:19699734-19699854 6.79e-03 50_[+2(7.69e-06)]_62 chrX:1614385-1614505 6.12e-01 120 chr2R:13934459-13934579 1.17e-01 44_[+2(7.14e-05)]_68 chr2L:5295014-5295134 2.52e-03 108_[+5(6.21e-05)]_4 chr3R:11859708-11859828 4.37e-01 120 chr3L:12058551-12058671 6.31e-01 120 chr3R:6812493-6812613 1.58e-01 120 chr2L:10791492-10791612 2.87e-01 120 chr2L:646661-646781 8.52e-01 120 chr3L:18800245-18800365 2.07e-03 108_[+3(2.79e-05)]_4 chr2R:9711476-9711596 1.24e-06 28_[+3(1.74e-06)]_6_[+2(9.35e-06)]_\ 8_[+4(2.00e-05)]_54 chr3L:4731812-4731932 9.78e-01 120 chr2R:15100622-15100742 9.80e-01 120 chr3R:14684076-14684196 8.78e-01 120 chr2R:15513543-15513663 3.84e-01 120 chrX:12760830-12760950 9.59e-01 120 chr2L:18628240-18628360 9.04e-01 120 chr2R:11048087-11048207 5.14e-01 120 chr2R:19578835-19578955 2.90e-04 36_[+3(2.79e-05)]_24_[+2(5.10e-06)]_\ 44 chrX:3867145-3867265 5.14e-01 120 chr2L:1887878-1887998 3.12e-02 120 chr2L:3004745-3004865 6.42e-01 120 chr2L:14236293-14236413 9.05e-01 120 chr3R:9966231-9966351 9.98e-01 120 chr3L:18013323-18013443 7.41e-02 120 chr2R:18923640-18923760 9.96e-01 120 chr3L:21738831-21738951 2.25e-01 120 chrX:1970762-1970882 4.15e-05 6_[+2(2.52e-06)]_41_[+3(3.77e-05)]_\ 57 chr2L:15275899-15276019 9.16e-01 120 chr2L:3582837-3582957 9.62e-01 120 chr3L:15180970-15181090 8.69e-01 120 chr2R:14082335-14082455 5.86e-01 120 chrX:9656406-9656526 9.94e-01 120 chr2R:11324032-11324152 8.70e-02 102_[+2(6.83e-05)]_10 chr3L:17577733-17577853 1.46e-03 103_[+1(3.21e-06)]_9 chr3R:14765491-14765611 4.01e-01 120 chr3R:13806766-13806886 9.20e-01 120 chr2R:13469200-13469320 9.74e-01 120 chr3R:7122662-7122782 5.77e-03 36_[+2(1.29e-05)]_76 chr3R:24218694-24218814 1.94e-03 81_[+1(2.62e-05)]_31 chr3R:9872407-9872527 7.07e-01 120 chr3R:30689766-30689886 9.98e-01 120 chr3L:4619951-4620071 8.54e-01 120 chr2R:13478466-13478586 7.49e-01 120 chr3L:15005203-15005323 9.02e-01 120 chr3L:1167061-1167181 9.83e-01 120 chr3R:5363616-5363736 2.29e-03 120 chr3R:26859338-26859458 9.22e-01 120 chr2L:15385499-15385619 4.92e-01 120 chrX:17542878-17542998 7.08e-01 120 chrX:16086249-16086369 2.13e-01 120 chr3R:21653049-21653169 8.58e-01 120 chr2R:18926660-18926780 9.58e-01 120 chr3L:10928860-10928980 8.50e-01 120 chr3R:20283357-20283477 9.55e-01 120 chr3R:18469591-18469711 9.97e-01 120 chrX:1826255-1826375 8.43e-01 120 chr3R:21935327-21935447 9.75e-01 120 chr3L:2386563-2386683 9.63e-01 120 chr3R:4687365-4687485 9.91e-01 120 chr2R:17436969-17437089 8.88e-01 120 chrX:6027984-6028104 1.00e+00 120 chr2L:6991211-6991331 5.15e-01 120 chr3R:27186345-27186465 3.08e-05 7_[+4(4.88e-06)]_22_[+1(2.04e-05)]_\ 75 chr2R:6122176-6122296 4.81e-03 50_[+3(5.83e-05)]_62 chr2L:7971553-7971673 8.31e-01 120 chr3L:1320629-1320749 3.03e-01 120 chr2L:382951-383071 6.77e-01 120 chr2L:7611699-7611819 9.96e-01 120 chr3R:22184220-22184340 9.36e-01 120 chr3L:10913390-10913510 2.53e-01 120 chr3L:20552027-20552147 8.19e-01 120 chr2R:13461317-13461437 5.56e-01 120 chr2R:8307926-8308046 7.26e-02 93_[+2(7.14e-05)]_19 chr2R:15740772-15740892 9.90e-01 120 chr3L:785850-785970 9.96e-01 120 chr2R:18314482-18314602 1.74e-01 120 chr2R:11033711-11033831 7.73e-01 120 chr3L:21894980-21895100 1.15e-01 120 chr2L:16594016-16594136 1.00e+00 120 chr2L:9448863-9448983 1.06e-01 41_[+2(8.18e-05)]_71 chr2R:19849221-19849341 9.80e-01 120 chr2R:19985131-19985251 1.00e+00 120 chr2R:12741613-12741733 6.14e-01 120 chr2R:7241741-7241861 9.77e-01 120 chr2R:19153427-19153547 6.03e-01 120 chr3R:9913601-9913721 9.19e-01 120 chr3L:16873187-16873307 1.00e+00 120 chr3L:166661-166781 7.11e-02 88_[+1(1.46e-05)]_24 chrX:3289482-3289602 4.65e-01 120 chr2L:21244143-21244263 2.39e-02 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************