******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip74EF.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10308197-10308317 1.0000 120 chr3L:17050770-17050890 1.0000 120 chr3L:20003729-20003849 1.0000 120 chr3L:17623051-17623171 1.0000 120 chr4:521212-521332 1.0000 120 chr3L:19638437-19638557 1.0000 120 chrX:9046687-9046807 1.0000 120 chrX:19278544-19278664 1.0000 120 chr4:734463-734583 1.0000 120 chr4:1136956-1137076 1.0000 120 chr3R:21069832-21069952 1.0000 120 chr3R:11774628-11774748 1.0000 120 chr3R:4810937-4811057 1.0000 120 chr4:140476-140596 1.0000 120 chr3R:13823107-13823227 1.0000 120 chr3L:159509-159629 1.0000 120 chr2R:21081267-21081387 1.0000 120 chr2R:23614862-23614982 1.0000 120 chr2R:10446472-10446592 1.0000 120 chr4:194994-195114 1.0000 120 chr2L:5004188-5004308 1.0000 120 chrX:11148916-11149036 1.0000 120 chr2L:18137001-18137121 1.0000 120 chr2L:10003293-10003413 1.0000 120 chr2L:18981985-18982105 1.0000 120 chr2L:3094981-3095101 1.0000 120 chrX:2106558-2106678 1.0000 120 chr3R:31939271-31939391 1.0000 120 chr2R:17616536-17616656 1.0000 120 chrX:17924226-17924346 1.0000 120 chr3R:13647465-13647585 1.0000 120 chr4:467115-467235 1.0000 120 chr2R:1515022-1515142 1.0000 120 chr3R:6413701-6413821 1.0000 120 chr2R:8051942-8052062 1.0000 120 chr2R:1516096-1516216 1.0000 120 chr2R:11710288-11710408 1.0000 120 chrX:17077298-17077418 1.0000 120 chr3R:4640931-4641051 1.0000 120 chrX:11872878-11872998 1.0000 120 chr2R:4134587-4134707 1.0000 120 chr2L:5945641-5945761 1.0000 120 chr3R:12638004-12638124 1.0000 120 chr3R:22397369-22397489 1.0000 120 chr2L:10316004-10316124 1.0000 120 chr3R:26103552-26103672 1.0000 120 chr4:788481-788601 1.0000 120 chrX:19578894-19579014 1.0000 120 chr3R:30154002-30154122 1.0000 120 chr2R:6169471-6169591 1.0000 120 chr3R:6819344-6819464 1.0000 120 chr3L:4092835-4092955 1.0000 120 chr2R:16142059-16142179 1.0000 120 chr2R:14799626-14799746 1.0000 120 chrX:15933845-15933965 1.0000 120 chrX:21630490-21630610 1.0000 120 chr2L:10422764-10422884 1.0000 120 chr2R:22318371-22318491 1.0000 120 chr2R:12613198-12613318 1.0000 120 chr2R:13043335-13043455 1.0000 120 chr3R:24771105-24771225 1.0000 120 chr3R:23013642-23013762 1.0000 120 chr3L:10285012-10285132 1.0000 120 chr3R:14031585-14031705 1.0000 120 chr3R:9543549-9543669 1.0000 120 chr2L:2886313-2886433 1.0000 120 chr2L:12546097-12546217 1.0000 120 chr2L:19791216-19791336 1.0000 120 chrX:8294995-8295115 1.0000 120 chr2R:13224691-13224811 1.0000 120 chr3R:6768407-6768527 1.0000 120 chr2R:2846683-2846803 1.0000 120 chr3L:23258617-23258737 1.0000 120 chr3L:14674175-14674295 1.0000 120 chr2R:17698651-17698771 1.0000 120 chr2L:22981720-22981840 1.0000 120 chr2R:18412388-18412508 1.0000 120 chr2R:17027779-17027899 1.0000 120 chr3L:19446705-19446825 1.0000 120 chrX:14583114-14583234 1.0000 120 chr2R:10418192-10418312 1.0000 120 chrX:15940610-15940730 1.0000 120 chrX:18788327-18788447 1.0000 120 chr3R:21619841-21619961 1.0000 120 chr3R:9877772-9877892 1.0000 120 chr3L:11918402-11918522 1.0000 120 chr3R:6870934-6871054 1.0000 120 chrX:8295447-8295567 1.0000 120 chr2L:3108412-3108532 1.0000 120 chr4:570824-570944 1.0000 120 chr3R:31086520-31086640 1.0000 120 chr4:1123834-1123954 1.0000 120 chr3L:18026130-18026250 1.0000 120 chr3R:21112164-21112284 1.0000 120 chr3R:9328924-9329044 1.0000 120 chr2R:14504306-14504426 1.0000 120 chr3L:18088196-18088316 1.0000 120 chr3L:6125314-6125434 1.0000 120 chrX:16553093-16553213 1.0000 120 chrX:9163887-9164007 1.0000 120 chr2R:5307148-5307268 1.0000 120 chr3L:26014145-26014265 1.0000 120 chr2L:22924625-22924745 1.0000 120 chrX:16217288-16217408 1.0000 120 chr2L:16049710-16049830 1.0000 120 chr2L:740125-740245 1.0000 120 chr3R:5223411-5223531 1.0000 120 chr3R:6908178-6908298 1.0000 120 chr4:63484-63604 1.0000 120 chrX:22433052-22433172 1.0000 120 chr3R:21408507-21408627 1.0000 120 chr4:313993-314113 1.0000 120 chr3L:27279148-27279268 1.0000 120 chr3L:5630655-5630775 1.0000 120 chr2R:10423620-10423740 1.0000 120 chr2R:5604824-5604944 1.0000 120 chr3L:21026714-21026834 1.0000 120 chr2R:5251053-5251173 1.0000 120 chrX:16350177-16350297 1.0000 120 chr2L:10964560-10964680 1.0000 120 chr3R:4232582-4232702 1.0000 120 chr2L:8478089-8478209 1.0000 120 chr2R:17436527-17436647 1.0000 120 chr2L:12617981-12618101 1.0000 120 chr3L:16052350-16052470 1.0000 120 chr3L:17570235-17570355 1.0000 120 chr3L:3789280-3789400 1.0000 120 chr3R:13794686-13794806 1.0000 120 chrX:2042374-2042494 1.0000 120 chr3L:6125087-6125207 1.0000 120 chr2R:10428535-10428655 1.0000 120 chr3R:10677651-10677771 1.0000 120 chr3L:17563874-17563994 1.0000 120 chr2L:5093100-5093220 1.0000 120 chr2R:12344786-12344906 1.0000 120 chr2L:12520352-12520472 1.0000 120 chr3L:25120526-25120646 1.0000 120 chr2R:10430005-10430125 1.0000 120 chr3R:4232795-4232915 1.0000 120 chr3L:27083940-27084060 1.0000 120 chr2R:4242986-4243106 1.0000 120 chr4:663215-663335 1.0000 120 chr2L:7065864-7065984 1.0000 120 chr3R:21589925-21590045 1.0000 120 chr2L:5001434-5001554 1.0000 120 chr2L:10298490-10298610 1.0000 120 chrX:8063504-8063624 1.0000 120 chr2R:1345293-1345413 1.0000 120 chr2L:22121621-22121741 1.0000 120 chr2L:19583804-19583924 1.0000 120 chr3L:19140548-19140668 1.0000 120 chrX:15986842-15986962 1.0000 120 chrX:13783534-13783654 1.0000 120 chr2L:8083734-8083854 1.0000 120 chrX:17827107-17827227 1.0000 120 chr4:359825-359945 1.0000 120 chr2L:22169198-22169318 1.0000 120 chr2R:5293854-5293974 1.0000 120 chrX:13257241-13257361 1.0000 120 chr3L:3078591-3078711 1.0000 120 chr3L:4553525-4553645 1.0000 120 chr3R:13840093-13840213 1.0000 120 chrX:18783605-18783725 1.0000 120 chrX:4425142-4425262 1.0000 120 chr3R:4812074-4812194 1.0000 120 chrX:16149158-16149278 1.0000 120 chr3L:16381424-16381544 1.0000 120 chr2L:11445986-11446106 1.0000 120 chr3R:8362513-8362633 1.0000 120 chr4:307995-308115 1.0000 120 chr3R:8191076-8191196 1.0000 120 chr3R:21580221-21580341 1.0000 120 chr3R:9550785-9550905 1.0000 120 chr3R:8349533-8349653 1.0000 120 chr4:1061013-1061133 1.0000 120 chrX:16683938-16684058 1.0000 120 chr3R:13064214-13064334 1.0000 120 chrX:12654298-12654418 1.0000 120 chr2L:15061248-15061368 1.0000 120 chrX:11714184-11714304 1.0000 120 chr3L:12693403-12693523 1.0000 120 chr3L:21026502-21026622 1.0000 120 chr3L:6969288-6969408 1.0000 120 chr2R:20111229-20111349 1.0000 120 chrX:8061038-8061158 1.0000 120 chr3R:31219842-31219962 1.0000 120 chr2R:20106530-20106650 1.0000 120 chrX:11137703-11137823 1.0000 120 chr3L:7249310-7249430 1.0000 120 chr3R:16431788-16431908 1.0000 120 chr2L:5980811-5980931 1.0000 120 chr2R:10117564-10117684 1.0000 120 chrX:19887357-19887477 1.0000 120 chr3R:4659909-4660029 1.0000 120 chr2L:11447732-11447852 1.0000 120 chr2L:10339337-10339457 1.0000 120 chr2R:14362946-14363066 1.0000 120 chr2R:12588534-12588654 1.0000 120 chr3R:25265714-25265834 1.0000 120 chr3R:8181630-8181750 1.0000 120 chrX:13995021-13995141 1.0000 120 chr4:43822-43942 1.0000 120 chrX:16968667-16968787 1.0000 120 chr3R:15794305-15794425 1.0000 120 chr2L:7306928-7307048 1.0000 120 chr2R:7011981-7012101 1.0000 120 chr2R:15931986-15932106 1.0000 120 chrX:13128221-13128341 1.0000 120 chr2L:15061484-15061604 1.0000 120 chrX:7015216-7015336 1.0000 120 chr3L:6059221-6059341 1.0000 120 chr2L:7426599-7426719 1.0000 120 chr3L:19062903-19063023 1.0000 120 chr3L:18759367-18759487 1.0000 120 chr2L:10506908-10507028 1.0000 120 chr3L:11206009-11206129 1.0000 120 chr3L:11010624-11010744 1.0000 120 chr3R:26052398-26052518 1.0000 120 chr3L:2371979-2372099 1.0000 120 chr3R:27151034-27151154 1.0000 120 chrX:16385005-16385125 1.0000 120 chrX:15844251-15844371 1.0000 120 chr3L:17566737-17566857 1.0000 120 chr3R:25193954-25194074 1.0000 120 chr3R:5606656-5606776 1.0000 120 chr2L:3813398-3813518 1.0000 120 chr3R:26881420-26881540 1.0000 120 chr2L:10387902-10388022 1.0000 120 chr2L:21757526-21757646 1.0000 120 chr3L:7381632-7381752 1.0000 120 chr3R:21184890-21185010 1.0000 120 chr3R:15242479-15242599 1.0000 120 chr3L:3767949-3768069 1.0000 120 chr2L:2753074-2753194 1.0000 120 chr3R:19861410-19861530 1.0000 120 chr3R:4334151-4334271 1.0000 120 chr3R:14724257-14724377 1.0000 120 chr3R:12121289-12121409 1.0000 120 chr2R:14214887-14215007 1.0000 120 chr2R:11891940-11892060 1.0000 120 chr2R:7533241-7533361 1.0000 120 chr4:67402-67522 1.0000 120 chr2L:18708619-18708739 1.0000 120 chr2L:6456005-6456125 1.0000 120 chr3R:16869475-16869595 1.0000 120 chr2L:4997530-4997650 1.0000 120 chr3L:9451633-9451753 1.0000 120 chr3R:11882655-11882775 1.0000 120 chr3L:19928629-19928749 1.0000 120 chrX:16640703-16640823 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Eip74EF/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip74EF.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.304 C 0.201 G 0.201 T 0.294 Background letter frequencies (from file dataset with add-one prior applied): A 0.304 C 0.201 G 0.201 T 0.294 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACTGCTTG MEME-1 width = 8 sites = 55 llr = 544 E-value = 5.8e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9::::::: pos.-specific C :9::a::: probability G 11:a:::8 matrix T ::a::aa2 bits 2.3 ** 2.1 ** 1.9 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACTGCTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:12121289-12121409 32 1.26e-05 GTGAACCATA ACTGCTTG ATTGAATACG chr3L:3767949-3768069 56 1.26e-05 GCGGCATAAA ACTGCTTG CTTTGCCTGC chrX:13128221-13128341 17 1.26e-05 CATCGCATGC ACTGCTTG CTTACCTTCA chr2R:10117564-10117684 69 1.26e-05 CAGCAACTTC ACTGCTTG CAAGCTATCG chr3R:16431788-16431908 52 1.26e-05 AAGCTCGTGC ACTGCTTG CATCGCAACA chr3R:21580221-21580341 63 1.26e-05 acgcttcttc actgcttg cggggctgtc chr3L:19140548-19140668 15 1.26e-05 CGTACTGTCA ACTGCTTG ACTCATCTGA chr2L:10298490-10298610 86 1.26e-05 AGTACAGAAG ACTGCTTG AGTAATTCCA chr3R:21589925-21590045 46 1.26e-05 TGGTACTTGC ACTGCTTG CTCGCCCAAT chr3R:10677651-10677771 68 1.26e-05 AATTTCCAGC ACTGCTTG ACTACTGCTT chr2R:17436527-17436647 60 1.26e-05 TGTGCATTGA ACTGCTTG CCCACTGCTT chr2L:8478089-8478209 86 1.26e-05 AGCAGTTTTG ACTGCTTG TGTCTGCGAA chr2L:10964560-10964680 86 1.26e-05 TAGTTCTTGG ACTGCTTG CAAAACATTT chr3R:21408507-21408627 100 1.26e-05 CAGTTGATGC ACTGCTTG CACATTGCGC chr3R:6908178-6908298 46 1.26e-05 ATCTGCGTGA ACTGCTTG CGCGTCTGCT chr2L:740125-740245 97 1.26e-05 ACAGAATCAG ACTGCTTG CCAGGTTAAG chrX:16553093-16553213 16 1.26e-05 AACTGCTGCA ACTGCTTG ACTAACCGCG chr3L:18088196-18088316 47 1.26e-05 TCATGTGCAT ACTGCTTG TTGCACGAAA chr3R:9328924-9329044 104 1.26e-05 ACTGCTTTGC ACTGCTTG CCTAGTGAT chr3R:21112164-21112284 57 1.26e-05 TTTGCCGTTA ACTGCTTG TTTTGTCATT chr3L:18026130-18026250 54 1.26e-05 GGAGCTTTGC ACTGCTTG CAATAAGTGA chr3R:31086520-31086640 3 1.26e-05 GC ACTGCTTG CTCGAGCAGA chr2L:3108412-3108532 33 1.26e-05 GGCAACATTC ACTGCTTG GCCACACTGC chr3R:6870934-6871054 109 1.26e-05 GCTTGCATGA ACTGCTTG AGAC chr3R:6768407-6768527 54 1.26e-05 TGCATCGACA ACTGCTTG TCTGCCGTAG chr3L:10285012-10285132 44 1.26e-05 CACTGCTTGA ACTGCTTG TTCTAACTTC chr2R:12613198-12613318 18 1.26e-05 AGCAAGTCGC ACTGCTTG CCCGAGAAAA chr2R:16142059-16142179 92 1.26e-05 ATCTGCATGC ACTGCTTG ACGTCAATCG chr2R:6169471-6169591 44 1.26e-05 TAGTTGATGC ACTGCTTG GATTAGGTGT chr3R:26103552-26103672 20 1.26e-05 CCCGCGAAAA ACTGCTTG CTAGCAGAGA chr3R:12638004-12638124 102 1.26e-05 TCCTTTACGC ACTGCTTG GCAAGCAGTT chr2R:11710288-11710408 64 1.26e-05 TGTCAAGTGC ACTGCTTG CTAAATAACA chrX:17924226-17924346 40 1.26e-05 ATAGTGCGAC ACTGCTTG CTTACTGAAA chr2R:17616536-17616656 72 1.26e-05 TGATTGGACC ACTGCTTG CTGCGGTGGT chrX:19278544-19278664 46 1.26e-05 CAAGTAGTAA ACTGCTTG ACAAGCAGCA chrX:9046687-9046807 55 1.26e-05 CTCCCTTGCA ACTGCTTG TGCGGCTTTT chr2L:3813398-3813518 99 3.11e-05 CAAGCAGTAA ACTGCTTT GGTGCTGTGG chr3R:25193954-25194074 102 3.11e-05 ATCAATTTCT ACTGCTTT TTTCTCGGTT chrX:8061038-8061158 43 3.11e-05 GCTCTAACGC ACTGCTTT TATTGATAAA chr3R:13840093-13840213 62 3.11e-05 ATTTGAAAAT ACTGCTTT TCCACTTGGC chr3R:21619841-21619961 84 3.11e-05 GCTACGTTTT ACTGCTTT CCGAGTTGGC chr3L:14674175-14674295 30 3.11e-05 ATACATGAAC ACTGCTTT GTGGATGAGC chr3L:4092835-4092955 37 3.11e-05 ATTTGAATAC ACTGCTTT ACCACGTAAG chr2R:8051942-8052062 50 3.11e-05 ACATAGGCGA ACTGCTTT AAAGTTTCCG chr2L:5001434-5001554 54 3.94e-05 TCAATTGTGA GCTGCTTG CAGCAAGCAG chrX:14583114-14583234 45 3.94e-05 AGAAACCTGA GCTGCTTG CATAATCTTA chr2R:20111229-20111349 34 5.20e-05 CAGGAAATGC AGTGCTTG TGTGTGTGCG chrX:4425142-4425262 103 5.20e-05 TGTGTGCGTG AGTGCTTG TGTATGTGAG chrX:2106558-2106678 28 6.03e-05 TGCATATAGA CCTGCTTG TAATAGATTT chr3L:3789280-3789400 67 7.29e-05 TTTGCGAAGC ACTGCTTC AAGCAGTGCA chrX:17077298-17077418 5 8.51e-05 gtgg tctgcttg tatgggaggc chrX:13783534-13783654 86 1.16e-04 ATTTCCGACA GCTGCTTT CCATTGGGCT chr2L:12520352-12520472 42 1.16e-04 GGCTATGTAA ACTGCTTA GTCAAACCGC chrX:11137703-11137823 38 1.35e-04 ATGTATACAA ATTGCTTG TACAGTGGAA chr3R:23013642-23013762 88 1.53e-04 AGCCGCAAGC AGTGCTTT CGAATTTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:12121289-12121409 1.3e-05 31_[+1]_81 chr3L:3767949-3768069 1.3e-05 55_[+1]_57 chrX:13128221-13128341 1.3e-05 16_[+1]_96 chr2R:10117564-10117684 1.3e-05 68_[+1]_44 chr3R:16431788-16431908 1.3e-05 51_[+1]_61 chr3R:21580221-21580341 1.3e-05 62_[+1]_50 chr3L:19140548-19140668 1.3e-05 14_[+1]_98 chr2L:10298490-10298610 1.3e-05 85_[+1]_27 chr3R:21589925-21590045 1.3e-05 45_[+1]_67 chr3R:10677651-10677771 1.3e-05 67_[+1]_45 chr2R:17436527-17436647 1.3e-05 59_[+1]_53 chr2L:8478089-8478209 1.3e-05 85_[+1]_27 chr2L:10964560-10964680 1.3e-05 85_[+1]_27 chr3R:21408507-21408627 1.3e-05 99_[+1]_13 chr3R:6908178-6908298 1.3e-05 45_[+1]_67 chr2L:740125-740245 1.3e-05 96_[+1]_16 chrX:16553093-16553213 1.3e-05 15_[+1]_97 chr3L:18088196-18088316 1.3e-05 46_[+1]_66 chr3R:9328924-9329044 1.3e-05 103_[+1]_9 chr3R:21112164-21112284 1.3e-05 56_[+1]_56 chr3L:18026130-18026250 1.3e-05 53_[+1]_59 chr3R:31086520-31086640 1.3e-05 2_[+1]_110 chr2L:3108412-3108532 1.3e-05 32_[+1]_80 chr3R:6870934-6871054 1.3e-05 108_[+1]_4 chr3R:6768407-6768527 1.3e-05 53_[+1]_59 chr3L:10285012-10285132 1.3e-05 43_[+1]_69 chr2R:12613198-12613318 1.3e-05 17_[+1]_95 chr2R:16142059-16142179 1.3e-05 91_[+1]_21 chr2R:6169471-6169591 1.3e-05 43_[+1]_69 chr3R:26103552-26103672 1.3e-05 19_[+1]_93 chr3R:12638004-12638124 1.3e-05 101_[+1]_11 chr2R:11710288-11710408 1.3e-05 63_[+1]_49 chrX:17924226-17924346 1.3e-05 39_[+1]_73 chr2R:17616536-17616656 1.3e-05 71_[+1]_41 chrX:19278544-19278664 1.3e-05 45_[+1]_67 chrX:9046687-9046807 1.3e-05 54_[+1]_58 chr2L:3813398-3813518 3.1e-05 98_[+1]_14 chr3R:25193954-25194074 3.1e-05 101_[+1]_11 chrX:8061038-8061158 3.1e-05 42_[+1]_70 chr3R:13840093-13840213 3.1e-05 61_[+1]_51 chr3R:21619841-21619961 3.1e-05 83_[+1]_29 chr3L:14674175-14674295 3.1e-05 29_[+1]_83 chr3L:4092835-4092955 3.1e-05 36_[+1]_76 chr2R:8051942-8052062 3.1e-05 49_[+1]_63 chr2L:5001434-5001554 3.9e-05 53_[+1]_59 chrX:14583114-14583234 3.9e-05 44_[+1]_68 chr2R:20111229-20111349 5.2e-05 33_[+1]_79 chrX:4425142-4425262 5.2e-05 102_[+1]_10 chrX:2106558-2106678 6e-05 27_[+1]_85 chr3L:3789280-3789400 7.3e-05 66_[+1]_46 chrX:17077298-17077418 8.5e-05 4_[+1]_108 chrX:13783534-13783654 0.00012 85_[+1]_27 chr2L:12520352-12520472 0.00012 41_[+1]_71 chrX:11137703-11137823 0.00013 37_[+1]_75 chr3R:23013642-23013762 0.00015 87_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGCTTG width=8 seqs=55 chr3R:12121289-12121409 ( 32) ACTGCTTG 1 chr3L:3767949-3768069 ( 56) ACTGCTTG 1 chrX:13128221-13128341 ( 17) ACTGCTTG 1 chr2R:10117564-10117684 ( 69) ACTGCTTG 1 chr3R:16431788-16431908 ( 52) ACTGCTTG 1 chr3R:21580221-21580341 ( 63) ACTGCTTG 1 chr3L:19140548-19140668 ( 15) ACTGCTTG 1 chr2L:10298490-10298610 ( 86) ACTGCTTG 1 chr3R:21589925-21590045 ( 46) ACTGCTTG 1 chr3R:10677651-10677771 ( 68) ACTGCTTG 1 chr2R:17436527-17436647 ( 60) ACTGCTTG 1 chr2L:8478089-8478209 ( 86) ACTGCTTG 1 chr2L:10964560-10964680 ( 86) ACTGCTTG 1 chr3R:21408507-21408627 ( 100) ACTGCTTG 1 chr3R:6908178-6908298 ( 46) ACTGCTTG 1 chr2L:740125-740245 ( 97) ACTGCTTG 1 chrX:16553093-16553213 ( 16) ACTGCTTG 1 chr3L:18088196-18088316 ( 47) ACTGCTTG 1 chr3R:9328924-9329044 ( 104) ACTGCTTG 1 chr3R:21112164-21112284 ( 57) ACTGCTTG 1 chr3L:18026130-18026250 ( 54) ACTGCTTG 1 chr3R:31086520-31086640 ( 3) ACTGCTTG 1 chr2L:3108412-3108532 ( 33) ACTGCTTG 1 chr3R:6870934-6871054 ( 109) ACTGCTTG 1 chr3R:6768407-6768527 ( 54) ACTGCTTG 1 chr3L:10285012-10285132 ( 44) ACTGCTTG 1 chr2R:12613198-12613318 ( 18) ACTGCTTG 1 chr2R:16142059-16142179 ( 92) ACTGCTTG 1 chr2R:6169471-6169591 ( 44) ACTGCTTG 1 chr3R:26103552-26103672 ( 20) ACTGCTTG 1 chr3R:12638004-12638124 ( 102) ACTGCTTG 1 chr2R:11710288-11710408 ( 64) ACTGCTTG 1 chrX:17924226-17924346 ( 40) ACTGCTTG 1 chr2R:17616536-17616656 ( 72) ACTGCTTG 1 chrX:19278544-19278664 ( 46) ACTGCTTG 1 chrX:9046687-9046807 ( 55) ACTGCTTG 1 chr2L:3813398-3813518 ( 99) ACTGCTTT 1 chr3R:25193954-25194074 ( 102) ACTGCTTT 1 chrX:8061038-8061158 ( 43) ACTGCTTT 1 chr3R:13840093-13840213 ( 62) ACTGCTTT 1 chr3R:21619841-21619961 ( 84) ACTGCTTT 1 chr3L:14674175-14674295 ( 30) ACTGCTTT 1 chr3L:4092835-4092955 ( 37) ACTGCTTT 1 chr2R:8051942-8052062 ( 50) ACTGCTTT 1 chr2L:5001434-5001554 ( 54) GCTGCTTG 1 chrX:14583114-14583234 ( 45) GCTGCTTG 1 chr2R:20111229-20111349 ( 34) AGTGCTTG 1 chrX:4425142-4425262 ( 103) AGTGCTTG 1 chrX:2106558-2106678 ( 28) CCTGCTTG 1 chr3L:3789280-3789400 ( 67) ACTGCTTC 1 chrX:17077298-17077418 ( 5) TCTGCTTG 1 chrX:13783534-13783654 ( 86) GCTGCTTT 1 chr2L:12520352-12520472 ( 42) ACTGCTTA 1 chrX:11137703-11137823 ( 38) ATTGCTTG 1 chr3R:23013642-23013762 ( 88) AGTGCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59032 E= 5.8e-050 158 -346 -188 -401 -1243 221 -188 -401 -1243 -1243 -1243 177 -1243 -1243 231 -1243 -1243 232 -1243 -1243 -1243 -1243 -1243 177 -1243 -1243 -1243 177 -406 -346 196 -69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 5.8e-050 0.909091 0.018182 0.054545 0.018182 0.000000 0.927273 0.054545 0.018182 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.018182 0.018182 0.781818 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 regular expression -------------------------------------------------------------------------------- ACTGCTTG -------------------------------------------------------------------------------- Time 7.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGCAGT MEME-2 width = 8 sites = 51 llr = 485 E-value = 1.5e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2aa::a:: pos.-specific C 8:::a::1 probability G :::a::a: matrix T :::::::9 bits 2.3 2.1 ** * 1.9 ** * 1.6 ****** Relative 1.4 ******* Entropy 1.2 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAGCAGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4997530-4997650 35 1.35e-05 GGAGCCCCAT CAAGCAGT GCACAGTGGG chr3R:12121289-12121409 88 1.35e-05 GACTTATACG CAAGCAGT TTGTACATTT chr3R:21184890-21185010 69 1.35e-05 CGCGGGTAAA CAAGCAGT TGACGGCTGA chr3R:26881420-26881540 80 1.35e-05 CACTCTTAAG CAAGCAGT ACTCACGTCT chr2L:3813398-3813518 89 1.35e-05 TGCTCAAAAG CAAGCAGT AAACTGCTTT chr3L:19062903-19063023 24 1.35e-05 GTCTTAATAG CAAGCAGT TGGCGAGTAT chr3R:16431788-16431908 77 1.35e-05 ACAATGGGGT CAAGCAGT GCGTGCGTAT chrX:16683938-16684058 67 1.35e-05 AAGCAGTTGG CAAGCAGT GTCAGAAATA chr3R:8191076-8191196 38 1.35e-05 GCAAGCAGTG CAAGCAGT GCTGGTCATT chrX:16149158-16149278 110 1.35e-05 ACCCAAAATG CAAGCAGT CGA chrX:13257241-13257361 60 1.35e-05 AGCAGACGCA CAAGCAGT TCCACTACAC chrX:8063504-8063624 93 1.35e-05 CAGTGCTCGA CAAGCAGT GCAGTCAGCA chr2L:10298490-10298610 71 1.35e-05 ATGTCTTTTG CAAGCAGT ACAGAAGACT chr2L:5001434-5001554 65 1.35e-05 CTGCTTGCAG CAAGCAGT GCGAACTGCT chr2L:8478089-8478209 20 1.35e-05 TTTTTACTGA CAAGCAGT CGTCAAGGAG chr2L:740125-740245 52 1.35e-05 TGCACTGCTT CAAGCAGT TATATTCGTA chr2L:16049710-16049830 13 1.35e-05 TGAGTACAAT CAAGCAGT CAAAACGAAG chrX:16553093-16553213 55 1.35e-05 CGCTGGCCAG CAAGCAGT GAAATAAGCA chr3L:18088196-18088316 74 1.35e-05 AAACGCATGC CAAGCAGT TCAAATCCAG chr3R:21619841-21619961 66 1.35e-05 TCGTAAATTG CAAGCAGT GCTACGTTTT chr3R:6768407-6768527 7 1.35e-05 CCTGGT CAAGCAGT TTTGCAAACG chr3R:23013642-23013762 59 1.35e-05 TTAACATCCG CAAGCAGT GCGTGCGATA chr3L:4092835-4092955 87 1.35e-05 TCAACCGTGG CAAGCAGT GCATAACCGC chr3R:30154002-30154122 74 1.35e-05 GAAAGCAGTG CAAGCAGT TCGTACGCTG chr3R:12638004-12638124 111 1.35e-05 CACTGCTTGG CAAGCAGT TT chr2R:8051942-8052062 68 1.35e-05 AAAGTTTCCG CAAGCAGT TGGGATTTAG chrX:2106558-2106678 11 1.35e-05 TACGTGAAAG CAAGCAGT GCATATAGAC chr2L:3094981-3095101 91 1.35e-05 GTGCGTGCAG CAAGCAGT GCCAGAAAGC chr3L:6059221-6059341 59 3.39e-05 TGACGAAAAA AAAGCAGT TTCAACGGTC chr3L:4553525-4553645 60 3.39e-05 GGACTTCGAA AAAGCAGT TTACAACAGG chr2L:8083734-8083854 8 3.39e-05 AGAAGCA AAAGCAGT GGAGCTGGGA chr3L:19140548-19140668 59 3.39e-05 TTCGTAAAAA AAAGCAGT TCTGTTTAAT chr3R:21408507-21408627 38 3.39e-05 TGCTATCTCT AAAGCAGT TCTCTTGCTG chr3R:6908178-6908298 101 3.39e-05 AACACAATAT AAAGCAGT ACATCTAGAC chr3L:14674175-14674295 66 3.39e-05 AGCTGTTAAG AAAGCAGT GCACTGTAAA chr2R:13043335-13043455 110 3.39e-05 AAACTCAAAC AAAGCAGT GTA chr2R:14799626-14799746 50 3.39e-05 AGCTGTCGGC AAAGCAGT TCAAAAACCA chr3R:6819344-6819464 61 3.39e-05 CGTTTTGTGC AAAGCAGT GCAAACCAGT chr3L:3767949-3768069 76 4.31e-05 TTGCCTGCCG CAAGCAGC TCAAAATTGA chr2R:23614862-23614982 102 4.31e-05 CGCTTTATTT CAAGCAGC GCAAACAGCT chrX:19278544-19278664 55 4.31e-05 AACTGCTTGA CAAGCAGC AAGTCGACTG chr3R:26103552-26103672 80 5.23e-05 TATCTGCGTA CAAGCAGG TCGCCACAAA chrX:16640703-16640823 91 6.12e-05 CTCCCTACTT CAGGCAGT GCGAACATAC chr3R:4334151-4334271 78 8.16e-05 AGTGATTTCC CAAGAAGT GTGGAAAACG chr2R:5293854-5293974 100 8.16e-05 TGTTACGTAT CAAGAAGT TGTGAATTGC chr2R:20111229-20111349 77 9.56e-05 gcagagagcg aaagcagc gcagcgacag chr3R:21112164-21112284 112 1.23e-04 ATACAAAAGC CAAGCAGA T chr3R:9877772-9877892 101 1.23e-04 CAGCCGGCTT CAAGCTGT GCTCCGTCCC chr2L:10339337-10339457 83 1.49e-04 TGTAGTACAA CAAGCACT CGCATCGATA chr3L:27279148-27279268 41 1.49e-04 CAAGCTTTTC CAACCAGT CTTATGATGA chr2L:2886313-2886433 13 1.70e-04 acaacaacaa caaACAGT AATGGAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4997530-4997650 1.3e-05 34_[+2]_78 chr3R:12121289-12121409 1.3e-05 87_[+2]_25 chr3R:21184890-21185010 1.3e-05 68_[+2]_44 chr3R:26881420-26881540 1.3e-05 79_[+2]_33 chr2L:3813398-3813518 1.3e-05 88_[+2]_24 chr3L:19062903-19063023 1.3e-05 23_[+2]_89 chr3R:16431788-16431908 1.3e-05 76_[+2]_36 chrX:16683938-16684058 1.3e-05 66_[+2]_46 chr3R:8191076-8191196 1.3e-05 37_[+2]_75 chrX:16149158-16149278 1.3e-05 109_[+2]_3 chrX:13257241-13257361 1.3e-05 59_[+2]_53 chrX:8063504-8063624 1.3e-05 92_[+2]_20 chr2L:10298490-10298610 1.3e-05 70_[+2]_42 chr2L:5001434-5001554 1.3e-05 64_[+2]_48 chr2L:8478089-8478209 1.3e-05 19_[+2]_93 chr2L:740125-740245 1.3e-05 51_[+2]_61 chr2L:16049710-16049830 1.3e-05 12_[+2]_100 chrX:16553093-16553213 1.3e-05 54_[+2]_58 chr3L:18088196-18088316 1.3e-05 73_[+2]_39 chr3R:21619841-21619961 1.3e-05 65_[+2]_47 chr3R:6768407-6768527 1.3e-05 6_[+2]_106 chr3R:23013642-23013762 1.3e-05 58_[+2]_54 chr3L:4092835-4092955 1.3e-05 86_[+2]_26 chr3R:30154002-30154122 1.3e-05 73_[+2]_39 chr3R:12638004-12638124 1.3e-05 110_[+2]_2 chr2R:8051942-8052062 1.3e-05 67_[+2]_45 chrX:2106558-2106678 1.3e-05 10_[+2]_102 chr2L:3094981-3095101 1.3e-05 90_[+2]_22 chr3L:6059221-6059341 3.4e-05 58_[+2]_54 chr3L:4553525-4553645 3.4e-05 59_[+2]_53 chr2L:8083734-8083854 3.4e-05 7_[+2]_105 chr3L:19140548-19140668 3.4e-05 58_[+2]_54 chr3R:21408507-21408627 3.4e-05 37_[+2]_75 chr3R:6908178-6908298 3.4e-05 100_[+2]_12 chr3L:14674175-14674295 3.4e-05 65_[+2]_47 chr2R:13043335-13043455 3.4e-05 109_[+2]_3 chr2R:14799626-14799746 3.4e-05 49_[+2]_63 chr3R:6819344-6819464 3.4e-05 60_[+2]_52 chr3L:3767949-3768069 4.3e-05 75_[+2]_37 chr2R:23614862-23614982 4.3e-05 101_[+2]_11 chrX:19278544-19278664 4.3e-05 54_[+2]_58 chr3R:26103552-26103672 5.2e-05 79_[+2]_33 chrX:16640703-16640823 6.1e-05 90_[+2]_22 chr3R:4334151-4334271 8.2e-05 77_[+2]_35 chr2R:5293854-5293974 8.2e-05 99_[+2]_13 chr2R:20111229-20111349 9.6e-05 76_[+2]_36 chr3R:21112164-21112284 0.00012 111_[+2]_1 chr3R:9877772-9877892 0.00012 100_[+2]_12 chr2L:10339337-10339457 0.00015 82_[+2]_30 chr3L:27279148-27279268 0.00015 40_[+2]_72 chr2L:2886313-2886433 0.00017 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGCAGT width=8 seqs=51 chr2L:4997530-4997650 ( 35) CAAGCAGT 1 chr3R:12121289-12121409 ( 88) CAAGCAGT 1 chr3R:21184890-21185010 ( 69) CAAGCAGT 1 chr3R:26881420-26881540 ( 80) CAAGCAGT 1 chr2L:3813398-3813518 ( 89) CAAGCAGT 1 chr3L:19062903-19063023 ( 24) CAAGCAGT 1 chr3R:16431788-16431908 ( 77) CAAGCAGT 1 chrX:16683938-16684058 ( 67) CAAGCAGT 1 chr3R:8191076-8191196 ( 38) CAAGCAGT 1 chrX:16149158-16149278 ( 110) CAAGCAGT 1 chrX:13257241-13257361 ( 60) CAAGCAGT 1 chrX:8063504-8063624 ( 93) CAAGCAGT 1 chr2L:10298490-10298610 ( 71) CAAGCAGT 1 chr2L:5001434-5001554 ( 65) CAAGCAGT 1 chr2L:8478089-8478209 ( 20) CAAGCAGT 1 chr2L:740125-740245 ( 52) CAAGCAGT 1 chr2L:16049710-16049830 ( 13) CAAGCAGT 1 chrX:16553093-16553213 ( 55) CAAGCAGT 1 chr3L:18088196-18088316 ( 74) CAAGCAGT 1 chr3R:21619841-21619961 ( 66) CAAGCAGT 1 chr3R:6768407-6768527 ( 7) CAAGCAGT 1 chr3R:23013642-23013762 ( 59) CAAGCAGT 1 chr3L:4092835-4092955 ( 87) CAAGCAGT 1 chr3R:30154002-30154122 ( 74) CAAGCAGT 1 chr3R:12638004-12638124 ( 111) CAAGCAGT 1 chr2R:8051942-8052062 ( 68) CAAGCAGT 1 chrX:2106558-2106678 ( 11) CAAGCAGT 1 chr2L:3094981-3095101 ( 91) CAAGCAGT 1 chr3L:6059221-6059341 ( 59) AAAGCAGT 1 chr3L:4553525-4553645 ( 60) AAAGCAGT 1 chr2L:8083734-8083854 ( 8) AAAGCAGT 1 chr3L:19140548-19140668 ( 59) AAAGCAGT 1 chr3R:21408507-21408627 ( 38) AAAGCAGT 1 chr3R:6908178-6908298 ( 101) AAAGCAGT 1 chr3L:14674175-14674295 ( 66) AAAGCAGT 1 chr2R:13043335-13043455 ( 110) AAAGCAGT 1 chr2R:14799626-14799746 ( 50) AAAGCAGT 1 chr3R:6819344-6819464 ( 61) AAAGCAGT 1 chr3L:3767949-3768069 ( 76) CAAGCAGC 1 chr2R:23614862-23614982 ( 102) CAAGCAGC 1 chrX:19278544-19278664 ( 55) CAAGCAGC 1 chr3R:26103552-26103672 ( 80) CAAGCAGG 1 chrX:16640703-16640823 ( 91) CAGGCAGT 1 chr3R:4334151-4334271 ( 78) CAAGAAGT 1 chr2R:5293854-5293974 ( 100) CAAGAAGT 1 chr2R:20111229-20111349 ( 77) AAAGCAGC 1 chr3R:21112164-21112284 ( 112) CAAGCAGA 1 chr3R:9877772-9877892 ( 101) CAAGCTGT 1 chr2L:10339337-10339457 ( 83) CAAGCACT 1 chr3L:27279148-27279268 ( 41) CAACCAGT 1 chr2L:2886313-2886433 ( 13) CAAACAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.62225 E= 1.5e-035 -50 197 -1232 -1232 172 -1232 -1232 -1232 169 -1232 -336 -1232 -395 -335 226 -1232 -295 226 -1232 -1232 169 -1232 -1232 -390 -1232 -335 228 -1232 -395 -136 -336 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.5e-035 0.215686 0.784314 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980392 0.000000 0.019608 0.000000 0.019608 0.019608 0.960784 0.000000 0.039216 0.960784 0.000000 0.000000 0.980392 0.000000 0.000000 0.019608 0.000000 0.019608 0.980392 0.000000 0.019608 0.078431 0.019608 0.882353 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 regular expression -------------------------------------------------------------------------------- [CA]AAGCAGT -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTGCTT MEME-3 width = 8 sites = 25 llr = 244 E-value = 9.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 29:::::: pos.-specific C 6:a::a:: probability G :1::a::: matrix T 1::a::aa bits 2.3 * * 2.1 * ** 1.9 ****** 1.6 ****** Relative 1.4 ******* Entropy 1.2 ******* (14.1 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACTGCTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21580221-21580341 14 1.26e-05 GCACTGATTT CActgctt gcttgacagc chr2L:5001434-5001554 32 1.26e-05 AGAAGCTGCT CACTGCTT ATTTTCAATT chr2R:17436527-17436647 70 1.26e-05 ACTGCTTGCC CACTGCTT CTGTTGCCGT chr2L:10964560-10964680 18 1.26e-05 AATTATGATA CACTGCTT AGGAATTTCT chr2L:740125-740245 44 1.26e-05 ATTTTCGTTG CACTGCTT CAAGCAGTTA chr3R:9328924-9329044 93 1.26e-05 TCCACCAAAG CACTGCTT TGCACTGCTT chr3L:18026130-18026250 32 1.26e-05 CAGTTTGTCG CACTGCTT GCATGGAGCT chr2L:3108412-3108532 45 1.26e-05 TGCTTGGCCA CACTGCTT TGAAATGCTT chr3L:10285012-10285132 34 1.26e-05 TTGCACAGCG CACTGCTT GAACTGCTTG chr3L:4092835-4092955 70 1.26e-05 GGAACCGTTT CACTGCTT CAACCGTGGC chr2R:11710288-11710408 39 1.26e-05 CTTACGCATG CACTGCTT GCCGTCGTGT chr2R:17616536-17616656 47 1.26e-05 CGCGTATATG CACTGCTT GCCATTCTGA chrX:9046687-9046807 31 1.26e-05 ACTGCTTACG CACTGCTT ACTCGACTCC chr3R:25193954-25194074 47 3.17e-05 ACTGGTTTGT AACTGCTT TGGCATTAGA chr3R:10677651-10677771 12 3.17e-05 TGTTCCCATC AACTGCTT GCTTACTGGC chr3L:18088196-18088316 15 3.17e-05 TGAAGATGTT AACTGCTT TATTCGCACG chr3R:31086520-31086640 55 3.17e-05 AAACTCGAGG AACTGCTT TAATGCGCTC chr3R:6870934-6871054 95 3.17e-05 TACACGCGTT AACTGCTT GCATGAACTG chr3R:26103552-26103672 110 3.17e-05 AGTTCAAATC AACTGCTT GCG chr3R:21408507-21408627 75 4.00e-05 GCAGTTGATG CGCTGCTT GTCGAAGCAG chrX:16553093-16553213 86 4.00e-05 GCAGCAGAAG CGCTGCTT AGTCCACAAG chr3L:19140548-19140668 79 5.85e-05 TGTTTAATAG TACTGCTT ACTCTTCGAG chr3R:6768407-6768527 37 5.85e-05 ATTCACCACA TACTGCTT GCATCGACAA chrX:19278544-19278664 68 7.11e-05 GCAGCAAGTC GACTGCTT TAGAGATTGT chrX:15940610-15940730 20 1.02e-04 TCCGTTAATA CACTGTTT CCACTTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21580221-21580341 1.3e-05 13_[+3]_99 chr2L:5001434-5001554 1.3e-05 31_[+3]_81 chr2R:17436527-17436647 1.3e-05 69_[+3]_43 chr2L:10964560-10964680 1.3e-05 17_[+3]_95 chr2L:740125-740245 1.3e-05 43_[+3]_69 chr3R:9328924-9329044 1.3e-05 92_[+3]_20 chr3L:18026130-18026250 1.3e-05 31_[+3]_81 chr2L:3108412-3108532 1.3e-05 44_[+3]_68 chr3L:10285012-10285132 1.3e-05 33_[+3]_79 chr3L:4092835-4092955 1.3e-05 69_[+3]_43 chr2R:11710288-11710408 1.3e-05 38_[+3]_74 chr2R:17616536-17616656 1.3e-05 46_[+3]_66 chrX:9046687-9046807 1.3e-05 30_[+3]_82 chr3R:25193954-25194074 3.2e-05 46_[+3]_66 chr3R:10677651-10677771 3.2e-05 11_[+3]_101 chr3L:18088196-18088316 3.2e-05 14_[+3]_98 chr3R:31086520-31086640 3.2e-05 54_[+3]_58 chr3R:6870934-6871054 3.2e-05 94_[+3]_18 chr3R:26103552-26103672 3.2e-05 109_[+3]_3 chr3R:21408507-21408627 4e-05 74_[+3]_38 chrX:16553093-16553213 4e-05 85_[+3]_27 chr3L:19140548-19140668 5.8e-05 78_[+3]_34 chr3R:6768407-6768527 5.8e-05 36_[+3]_76 chrX:19278544-19278664 7.1e-05 67_[+3]_45 chrX:15940610-15940730 0.0001 19_[+3]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTGCTT width=8 seqs=25 chr3R:21580221-21580341 ( 14) CACTGCTT 1 chr2L:5001434-5001554 ( 32) CACTGCTT 1 chr2R:17436527-17436647 ( 70) CACTGCTT 1 chr2L:10964560-10964680 ( 18) CACTGCTT 1 chr2L:740125-740245 ( 44) CACTGCTT 1 chr3R:9328924-9329044 ( 93) CACTGCTT 1 chr3L:18026130-18026250 ( 32) CACTGCTT 1 chr2L:3108412-3108532 ( 45) CACTGCTT 1 chr3L:10285012-10285132 ( 34) CACTGCTT 1 chr3L:4092835-4092955 ( 70) CACTGCTT 1 chr2R:11710288-11710408 ( 39) CACTGCTT 1 chr2R:17616536-17616656 ( 47) CACTGCTT 1 chrX:9046687-9046807 ( 31) CACTGCTT 1 chr3R:25193954-25194074 ( 47) AACTGCTT 1 chr3R:10677651-10677771 ( 12) AACTGCTT 1 chr3L:18088196-18088316 ( 15) AACTGCTT 1 chr3R:31086520-31086640 ( 55) AACTGCTT 1 chr3R:6870934-6871054 ( 95) AACTGCTT 1 chr3R:26103552-26103672 ( 110) AACTGCTT 1 chr3R:21408507-21408627 ( 75) CGCTGCTT 1 chrX:16553093-16553213 ( 86) CGCTGCTT 1 chr3L:19140548-19140668 ( 79) TACTGCTT 1 chr3R:6768407-6768527 ( 37) TACTGCTT 1 chrX:19278544-19278664 ( 68) GACTGCTT 1 chrX:15940610-15940730 ( 20) CACTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 9.2e-006 -34 167 -233 -187 160 -1129 -133 -1129 -1129 232 -1129 -1129 -1129 -1129 -1129 177 -1129 -1129 231 -1129 -1129 226 -1129 -287 -1129 -1129 -1129 177 -1129 -1129 -1129 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 9.2e-006 0.240000 0.640000 0.040000 0.080000 0.920000 0.000000 0.080000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 regular expression -------------------------------------------------------------------------------- [CA]ACTGCTT -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGCAGTG MEME-4 width = 8 sites = 31 llr = 280 E-value = 5.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 99::a::1 pos.-specific C :1:9::2: probability G 1:a1:a:8 matrix T ::::::81 bits 2.3 * 2.1 ** * 1.9 ** * 1.6 **** Relative 1.4 ***** Entropy 1.2 ******** (13.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGCAGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4997530-4997650 17 1.35e-05 TAGATTCAAA AAGCAGTG GGAGCCCCAT chr3R:12121289-12121409 17 1.35e-05 ATAGTTATGC AAGCAGTG AACCATAACT chr3R:21184890-21185010 49 1.35e-05 GTTGACCGGC AAGCAGTG ATCGCGGGTA chr3R:26881420-26881540 104 1.35e-05 GTCTTCATAC AAGCAGTG TGTGCGTAC chr3L:6059221-6059341 81 1.35e-05 ACGGTCAATG AAGCAGTG CATAGAACGG chr3R:8191076-8191196 30 1.35e-05 AGCAGAAAGC AAGCAGTG CAAGCAGTGC chrX:13257241-13257361 27 1.35e-05 TGCGCTGTGC AAGCAGTG GTCAAACATA chrX:8063504-8063624 80 1.35e-05 CACGCGGAGA AAGCAGTG CTCGACAAGC chr3L:3789280-3789400 75 1.35e-05 GCACTGCTTC AAGCAGTG CAATATTTAC chr2L:8478089-8478209 44 1.35e-05 GGAGTTAACT AAGCAGTG CATCTCAACA chr2L:16049710-16049830 67 1.35e-05 AGGGGAAATC AAGCAGTG GAAGGGGAAC chr3R:30154002-30154122 66 1.35e-05 TTCCAAACGA AAGCAGTG CAAGCAGTTC chr2R:8051942-8052062 8 1.35e-05 CATCGTC AAGCAGTG CCCTAACAGT chr2L:11445986-11446106 83 2.27e-05 TACAAAGAAG AAGCAGCG AGACTTCCTT chr2R:14799626-14799746 67 2.27e-05 TTCAAAAACC AAGCAGCG CATAGCTACG chr2L:3813398-3813518 73 3.16e-05 GTTGCAAGGA GAGCAGTG CTCAAAAGCA chr2R:15931986-15932106 46 3.16e-05 AGATAGTTGT GAGCAGTG GAATCAGACT chrX:16683938-16684058 84 5.13e-05 TGTCAGAAAT AAGCAGTT CAAAGCGGGA chr3R:21408507-21408627 87 5.13e-05 CTGCTTGTCG AAGCAGTT GATGCACTGC chr2L:3094981-3095101 105 5.13e-05 CAGTGCCAGA AAGCAGTT CACATGTT chrX:19887357-19887477 83 6.02e-05 AAACAGTAAT ACGCAGTG CAACGCCACA chr2L:12520352-12520472 112 8.06e-05 TTTGAAAACT AAGCAGTA G chr2R:13043335-13043455 34 8.06e-05 CAAACCAATA AAGCAGTA TATTCTACTT chr3R:6819344-6819464 82 8.06e-05 AACCAGTTTA AAGCAGTA CACAAAACTT chr2L:10298490-10298610 33 9.41e-05 CAACCAGCAC AAGGAGTG ATGTAGCAGG chr3R:5223411-5223531 31 9.41e-05 CTAAGGATTG AAGGAGTG TTTTCACCGT chr3L:19928629-19928749 68 1.03e-04 TATTTTTGGA CAGCAGTG TGAACGGATG chr2L:2753074-2753194 82 1.09e-04 GCGAAAAAGA GAGCAGCG AGAGCGTTTA chr3L:4553525-4553645 36 1.23e-04 GTTTTCTTGC AAGCAGCT TTTGATGGAC chrX:16217288-16217408 46 1.29e-04 GCCAAAGAGA ACGCAGCG CTCGCTCTCG chr2R:1345293-1345413 40 1.85e-04 TGGTCTTCTT AAACAGTG GTTGCGTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4997530-4997650 1.3e-05 16_[+4]_96 chr3R:12121289-12121409 1.3e-05 16_[+4]_96 chr3R:21184890-21185010 1.3e-05 48_[+4]_64 chr3R:26881420-26881540 1.3e-05 103_[+4]_9 chr3L:6059221-6059341 1.3e-05 80_[+4]_32 chr3R:8191076-8191196 1.3e-05 29_[+4]_83 chrX:13257241-13257361 1.3e-05 26_[+4]_86 chrX:8063504-8063624 1.3e-05 79_[+4]_33 chr3L:3789280-3789400 1.3e-05 74_[+4]_38 chr2L:8478089-8478209 1.3e-05 43_[+4]_69 chr2L:16049710-16049830 1.3e-05 66_[+4]_46 chr3R:30154002-30154122 1.3e-05 65_[+4]_47 chr2R:8051942-8052062 1.3e-05 7_[+4]_105 chr2L:11445986-11446106 2.3e-05 82_[+4]_30 chr2R:14799626-14799746 2.3e-05 66_[+4]_46 chr2L:3813398-3813518 3.2e-05 72_[+4]_40 chr2R:15931986-15932106 3.2e-05 45_[+4]_67 chrX:16683938-16684058 5.1e-05 83_[+4]_29 chr3R:21408507-21408627 5.1e-05 86_[+4]_26 chr2L:3094981-3095101 5.1e-05 104_[+4]_8 chrX:19887357-19887477 6e-05 82_[+4]_30 chr2L:12520352-12520472 8.1e-05 111_[+4]_1 chr2R:13043335-13043455 8.1e-05 33_[+4]_79 chr3R:6819344-6819464 8.1e-05 81_[+4]_31 chr2L:10298490-10298610 9.4e-05 32_[+4]_80 chr3R:5223411-5223531 9.4e-05 30_[+4]_82 chr3L:19928629-19928749 0.0001 67_[+4]_45 chr2L:2753074-2753194 0.00011 81_[+4]_31 chr3L:4553525-4553645 0.00012 35_[+4]_77 chrX:16217288-16217408 0.00013 45_[+4]_67 chr2R:1345293-1345413 0.00019 39_[+4]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGCAGTG width=8 seqs=31 chr2L:4997530-4997650 ( 17) AAGCAGTG 1 chr3R:12121289-12121409 ( 17) AAGCAGTG 1 chr3R:21184890-21185010 ( 49) AAGCAGTG 1 chr3R:26881420-26881540 ( 104) AAGCAGTG 1 chr3L:6059221-6059341 ( 81) AAGCAGTG 1 chr3R:8191076-8191196 ( 30) AAGCAGTG 1 chrX:13257241-13257361 ( 27) AAGCAGTG 1 chrX:8063504-8063624 ( 80) AAGCAGTG 1 chr3L:3789280-3789400 ( 75) AAGCAGTG 1 chr2L:8478089-8478209 ( 44) AAGCAGTG 1 chr2L:16049710-16049830 ( 67) AAGCAGTG 1 chr3R:30154002-30154122 ( 66) AAGCAGTG 1 chr2R:8051942-8052062 ( 8) AAGCAGTG 1 chr2L:11445986-11446106 ( 83) AAGCAGCG 1 chr2R:14799626-14799746 ( 67) AAGCAGCG 1 chr2L:3813398-3813518 ( 73) GAGCAGTG 1 chr2R:15931986-15932106 ( 46) GAGCAGTG 1 chrX:16683938-16684058 ( 84) AAGCAGTT 1 chr3R:21408507-21408627 ( 87) AAGCAGTT 1 chr2L:3094981-3095101 ( 105) AAGCAGTT 1 chrX:19887357-19887477 ( 83) ACGCAGTG 1 chr2L:12520352-12520472 ( 112) AAGCAGTA 1 chr2R:13043335-13043455 ( 34) AAGCAGTA 1 chr3R:6819344-6819464 ( 82) AAGCAGTA 1 chr2L:10298490-10298610 ( 33) AAGGAGTG 1 chr3R:5223411-5223531 ( 31) AAGGAGTG 1 chr3L:19928629-19928749 ( 68) CAGCAGTG 1 chr2L:2753074-2753194 ( 82) GAGCAGCG 1 chr3L:4553525-4553645 ( 36) AAGCAGCT 1 chrX:16217288-16217408 ( 46) ACGCAGCG 1 chr2R:1345293-1345413 ( 40) AAACAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 5.9e-003 152 -263 -106 -1160 162 -164 -1160 -1160 -323 -1160 227 -1160 -1160 222 -164 -1160 172 -1160 -1160 -1160 -1160 -1160 231 -1160 -1160 -32 -1160 151 -165 -1160 194 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 5.9e-003 0.870968 0.032258 0.096774 0.000000 0.935484 0.064516 0.000000 0.000000 0.032258 0.000000 0.967742 0.000000 0.000000 0.935484 0.064516 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.161290 0.000000 0.838710 0.096774 0.000000 0.774194 0.129032 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTG MEME-4 regular expression -------------------------------------------------------------------------------- AAGCAGTG -------------------------------------------------------------------------------- Time 25.75 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-5 width = 8 sites = 25 llr = 233 E-value = 6.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:7:8:a: pos.-specific C :a:a1a:a probability G ::1:1::: matrix T ::1::::: bits 2.3 * * * 2.1 * * * * 1.9 * * * * 1.6 * * *** Relative 1.4 ** * *** Entropy 1.2 ** * *** (13.5 bits) 0.9 ** * *** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17566737-17566857 3 1.39e-05 tc acacacac aAGCCCAGAC chr3L:11010624-11010744 80 1.39e-05 GCGcactcac acacacac gcacacgcag chr2L:7306928-7307048 109 1.39e-05 CCACTCGCAC ACACACAC CATC chr2L:11447732-11447852 32 1.39e-05 ccattcacac acacacac acaGCGACAG chrX:11714184-11714304 44 1.39e-05 ggatggacac acacacac ttactcagca chrX:16149158-16149278 20 1.39e-05 gcacaggagc acacacac aaagcacctc chrX:17827107-17827227 13 1.39e-05 acctacgcac acacacac acacacactc chr2L:12617981-12618101 71 1.39e-05 CACGCATCTC ACACACAC ACCCATACAC chr3L:21026714-21026834 10 1.39e-05 TCCTCTCAC ACACACAC GCATCAACCA chr2L:19791216-19791336 110 1.39e-05 AGAGAGGGAA ACACACAC TCA chrX:19578894-19579014 98 1.39e-05 TTGCTTGCAC ACACACAC ACTCACGCTC chr3L:12693403-12693523 29 2.32e-05 AAGAGAGCGC ACGCACAC CAGCGAAGGT chr3L:17570235-17570355 95 2.32e-05 CTCGCGGATA ACGCACAC CAGCAAAGAC chrX:13128221-13128341 34 3.24e-05 GCTTACCTTC ACACGCAC AAAAGGGGAT chrX:16217288-16217408 20 3.24e-05 ACACACATTC ACACGCAC TGCCGCCAGC chr3R:13064214-13064334 64 4.59e-05 TTACGCACGC ACTCACAC CAATGCCAGT chr3R:9550785-9550905 38 4.59e-05 ACACATACAC ACTCACAC CGATGCACAA chr3L:17563874-17563994 113 4.59e-05 AGCAacacgg actcacac chrX:11137703-11137823 56 5.51e-05 TACAGTGGAA ACACCCAC ATTCGAGACG chr3R:11774628-11774748 20 5.51e-05 CCAGTCATTC ACACCCAC GGAGCACATA chr2R:18412388-18412508 71 6.43e-05 GACGTCGACG ACCCACAC GCTCACATAG chr3L:18759367-18759487 96 7.35e-05 TGAGTATATT GCACACAC GTTGTTTTTg chr2L:10422764-10422884 91 9.31e-05 CCACTGAGCA ACACTCAC AATGATCTAA chrX:17924226-17924346 69 9.31e-05 TCAAAATGAA ACGCGCAC ttttaatttt chr3R:13647465-13647585 21 1.28e-04 CCCAAAAGCA ATACACAC TGTGCATTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17566737-17566857 1.4e-05 2_[+5]_110 chr3L:11010624-11010744 1.4e-05 79_[+5]_33 chr2L:7306928-7307048 1.4e-05 108_[+5]_4 chr2L:11447732-11447852 1.4e-05 31_[+5]_81 chrX:11714184-11714304 1.4e-05 43_[+5]_69 chrX:16149158-16149278 1.4e-05 19_[+5]_93 chrX:17827107-17827227 1.4e-05 12_[+5]_100 chr2L:12617981-12618101 1.4e-05 70_[+5]_42 chr3L:21026714-21026834 1.4e-05 9_[+5]_103 chr2L:19791216-19791336 1.4e-05 109_[+5]_3 chrX:19578894-19579014 1.4e-05 97_[+5]_15 chr3L:12693403-12693523 2.3e-05 28_[+5]_84 chr3L:17570235-17570355 2.3e-05 94_[+5]_18 chrX:13128221-13128341 3.2e-05 33_[+5]_79 chrX:16217288-16217408 3.2e-05 19_[+5]_93 chr3R:13064214-13064334 4.6e-05 63_[+5]_49 chr3R:9550785-9550905 4.6e-05 37_[+5]_75 chr3L:17563874-17563994 4.6e-05 112_[+5] chrX:11137703-11137823 5.5e-05 55_[+5]_57 chr3R:11774628-11774748 5.5e-05 19_[+5]_93 chr2R:18412388-18412508 6.4e-05 70_[+5]_42 chr3L:18759367-18759487 7.4e-05 95_[+5]_17 chr2L:10422764-10422884 9.3e-05 90_[+5]_22 chrX:17924226-17924346 9.3e-05 68_[+5]_44 chr3R:13647465-13647585 0.00013 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=25 chr3L:17566737-17566857 ( 3) ACACACAC 1 chr3L:11010624-11010744 ( 80) ACACACAC 1 chr2L:7306928-7307048 ( 109) ACACACAC 1 chr2L:11447732-11447852 ( 32) ACACACAC 1 chrX:11714184-11714304 ( 44) ACACACAC 1 chrX:16149158-16149278 ( 20) ACACACAC 1 chrX:17827107-17827227 ( 13) ACACACAC 1 chr2L:12617981-12618101 ( 71) ACACACAC 1 chr3L:21026714-21026834 ( 10) ACACACAC 1 chr2L:19791216-19791336 ( 110) ACACACAC 1 chrX:19578894-19579014 ( 98) ACACACAC 1 chr3L:12693403-12693523 ( 29) ACGCACAC 1 chr3L:17570235-17570355 ( 95) ACGCACAC 1 chrX:13128221-13128341 ( 34) ACACGCAC 1 chrX:16217288-16217408 ( 20) ACACGCAC 1 chr3R:13064214-13064334 ( 64) ACTCACAC 1 chr3R:9550785-9550905 ( 38) ACTCACAC 1 chr3L:17563874-17563994 ( 113) ACTCACAC 1 chrX:11137703-11137823 ( 56) ACACCCAC 1 chr3R:11774628-11774748 ( 20) ACACCCAC 1 chr2R:18412388-18412508 ( 71) ACCCACAC 1 chr3L:18759367-18759487 ( 96) GCACACAC 1 chr2L:10422764-10422884 ( 91) ACACTCAC 1 chrX:17924226-17924346 ( 69) ACGCGCAC 1 chr3R:13647465-13647585 ( 21) ATACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 6.4e-001 166 -1129 -233 -1129 -1129 226 -1129 -287 124 -232 -75 -129 -1129 232 -1129 -1129 132 -133 -75 -287 -1129 232 -1129 -1129 172 -1129 -1129 -1129 -1129 232 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 6.4e-001 0.960000 0.000000 0.040000 0.000000 0.000000 0.960000 0.000000 0.040000 0.720000 0.040000 0.120000 0.120000 0.000000 1.000000 0.000000 0.000000 0.760000 0.080000 0.120000 0.040000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 regular expression -------------------------------------------------------------------------------- ACACACAC -------------------------------------------------------------------------------- Time 31.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10308197-10308317 6.78e-01 120 chr3L:17050770-17050890 9.04e-01 120 chr3L:20003729-20003849 9.82e-01 120 chr3L:17623051-17623171 3.69e-01 120 chr4:521212-521332 7.87e-01 120 chr3L:19638437-19638557 7.93e-02 120 chrX:9046687-9046807 6.01e-04 19_[+3(1.26e-05)]_3_[+3(1.26e-05)]_\ 16_[+1(1.26e-05)]_58 chrX:19278544-19278664 3.81e-06 45_[+1(1.26e-05)]_1_[+2(4.31e-05)]_\ 6_[+1(3.11e-05)]_44 chr4:734463-734583 9.31e-01 120 chr4:1136956-1137076 5.78e-01 120 chr3R:21069832-21069952 9.80e-01 120 chr3R:11774628-11774748 4.88e-02 19_[+5(5.51e-05)]_93 chr3R:4810937-4811057 4.96e-03 120 chr4:140476-140596 9.56e-01 120 chr3R:13823107-13823227 5.78e-01 120 chr3L:159509-159629 4.02e-01 120 chr2R:21081267-21081387 7.26e-01 120 chr2R:23614862-23614982 3.32e-04 102_[+4(2.27e-05)]_10 chr2R:10446472-10446592 4.23e-01 120 chr4:194994-195114 5.54e-01 120 chr2L:5004188-5004308 6.23e-01 120 chrX:11148916-11149036 2.61e-01 120 chr2L:18137001-18137121 6.17e-01 120 chr2L:10003293-10003413 7.35e-01 120 chr2L:18981985-18982105 1.36e-01 120 chr2L:3094981-3095101 3.93e-04 90_[+2(1.35e-05)]_5_[+2(3.39e-05)]_\ 9 chrX:2106558-2106678 2.92e-06 10_[+2(1.35e-05)]_9_[+1(6.03e-05)]_\ 85 chr3R:31939271-31939391 5.78e-01 120 chr2R:17616536-17616656 1.63e-03 47_[+1(1.26e-05)]_16_[+1(1.26e-05)]_\ 41 chrX:17924226-17924346 3.37e-05 39_[+1(1.26e-05)]_21_[+5(9.31e-05)]_\ 44 chr3R:13647465-13647585 1.13e-01 120 chr4:467115-467235 3.04e-01 120 chr2R:1515022-1515142 6.92e-01 120 chr3R:6413701-6413821 1.82e-01 120 chr2R:8051942-8052062 3.37e-07 6_[+2(1.35e-05)]_35_[+1(3.11e-05)]_\ 10_[+2(1.35e-05)]_45 chr2R:1516096-1516216 5.75e-01 120 chr2R:11710288-11710408 3.10e-04 39_[+1(1.26e-05)]_16_[+1(1.26e-05)]_\ 49 chrX:17077298-17077418 1.44e-01 4_[+1(8.51e-05)]_108 chr3R:4640931-4641051 8.16e-01 120 chrX:11872878-11872998 8.51e-01 120 chr2R:4134587-4134707 6.77e-01 120 chr2L:5945641-5945761 1.53e-01 120 chr3R:12638004-12638124 1.41e-07 101_[+1(1.26e-05)]_1_[+2(1.35e-05)]_\ 2 chr3R:22397369-22397489 5.79e-01 120 chr2L:10316004-10316124 2.94e-01 120 chr3R:26103552-26103672 1.92e-05 19_[+1(1.26e-05)]_52_[+2(5.23e-05)]_\ 23_[+1(1.26e-05)]_2 chr4:788481-788601 6.59e-02 120 chrX:19578894-19579014 1.82e-03 95_[+5(1.39e-05)]_[+5(9.31e-05)]_9 chr3R:30154002-30154122 3.80e-04 65_[+4(1.35e-05)]_[+2(1.35e-05)]_39 chr2R:6169471-6169591 1.75e-03 43_[+1(1.26e-05)]_69 chr3R:6819344-6819464 1.25e-03 61_[+4(1.35e-05)]_11_[+2(3.39e-05)]_\ 32 chr3L:4092835-4092955 1.93e-07 35_[+3(1.26e-05)]_26_[+3(1.26e-05)]_\ 9_[+2(1.35e-05)]_13_[+3(8.37e-05)]_5 chr2R:16142059-16142179 5.65e-04 91_[+1(1.26e-05)]_21 chr2R:14799626-14799746 6.21e-03 49_[+2(3.39e-05)]_9_[+4(2.27e-05)]_\ 46 chrX:15933845-15933965 4.46e-01 120 chrX:21630490-21630610 5.30e-01 120 chr2L:10422764-10422884 6.37e-04 90_[+5(9.31e-05)]_22 chr2R:22318371-22318491 9.35e-01 120 chr2R:12613198-12613318 4.44e-05 17_[+1(1.26e-05)]_95 chr2R:13043335-13043455 2.91e-04 32_[+2(3.39e-05)]_70_[+4(1.35e-05)]_\ 2 chr3R:24771105-24771225 4.61e-01 120 chr3R:23013642-23013762 1.16e-05 58_[+2(1.35e-05)]_16_[+2(1.35e-05)]_\ 30 chr3L:10285012-10285132 2.91e-04 34_[+1(1.26e-05)]_1_[+1(1.26e-05)]_\ 69 chr3R:14031585-14031705 7.92e-01 120 chr3R:9543549-9543669 2.33e-01 120 chr2L:2886313-2886433 6.22e-02 120 chr2L:12546097-12546217 5.91e-01 120 chr2L:19791216-19791336 6.81e-02 109_[+5(1.39e-05)]_3 chrX:8294995-8295115 1.98e-01 120 chr2R:13224691-13224811 1.97e-01 120 chr3R:6768407-6768527 4.86e-07 6_[+2(1.35e-05)]_23_[+1(1.26e-05)]_\ 8_[+1(1.26e-05)]_59 chr2R:2846683-2846803 6.81e-01 120 chr3L:23258617-23258737 4.63e-01 120 chr3L:14674175-14674295 2.31e-07 28_[+3(1.26e-05)]_30_[+4(1.35e-05)]_\ 46 chr2R:17698651-17698771 5.61e-01 120 chr2L:22981720-22981840 6.98e-01 120 chr2R:18412388-18412508 2.20e-01 36_[+5(6.43e-05)]_26_[+5(6.43e-05)]_\ 42 chr2R:17027779-17027899 6.88e-01 120 chr3L:19446705-19446825 9.86e-01 120 chrX:14583114-14583234 3.86e-03 44_[+1(3.94e-05)]_68 chr2R:10418192-10418312 3.44e-01 120 chrX:15940610-15940730 2.13e-01 120 chrX:18788327-18788447 5.85e-02 120 chr3R:21619841-21619961 7.19e-07 65_[+2(1.35e-05)]_10_[+1(3.11e-05)]_\ 29 chr3R:9877772-9877892 8.36e-02 120 chr3L:11918402-11918522 3.55e-01 120 chr3R:6870934-6871054 6.83e-04 95_[+1(1.26e-05)]_5_[+1(1.26e-05)]_\ 4 chrX:8295447-8295567 7.84e-02 120 chr2L:3108412-3108532 9.15e-05 32_[+1(1.26e-05)]_4_[+3(1.26e-05)]_\ 68 chr4:570824-570944 1.75e-01 120 chr3R:31086520-31086640 7.15e-05 2_[+1(1.26e-05)]_45_[+1(3.11e-05)]_\ 57 chr4:1123834-1123954 2.84e-02 120 chr3L:18026130-18026250 1.17e-03 32_[+1(1.26e-05)]_13_[+1(1.26e-05)]_\ 59 chr3R:21112164-21112284 2.46e-05 56_[+1(1.26e-05)]_56 chr3R:9328924-9329044 3.15e-05 92_[+3(1.26e-05)]_3_[+1(1.26e-05)]_\ 9 chr2R:14504306-14504426 7.85e-01 120 chr3L:18088196-18088316 4.91e-08 15_[+1(3.11e-05)]_23_[+1(1.26e-05)]_\ 19_[+2(1.35e-05)]_39 chr3L:6125314-6125434 1.08e-01 120 chrX:16553093-16553213 6.77e-08 15_[+1(1.26e-05)]_31_[+2(1.35e-05)]_\ 23_[+3(4.00e-05)]_27 chrX:9163887-9164007 8.78e-01 120 chr2R:5307148-5307268 8.90e-01 120 chr3L:26014145-26014265 4.09e-01 120 chr2L:22924625-22924745 7.10e-02 120 chrX:16217288-16217408 7.66e-04 7_[+5(7.35e-05)]_4_[+5(3.24e-05)]_\ 93 chr2L:16049710-16049830 3.46e-03 12_[+2(1.35e-05)]_7_[+4(5.13e-05)]_\ 10_[+4(1.35e-05)]_12_[+2(1.35e-05)]_47 chr2L:740125-740245 2.91e-07 43_[+3(1.26e-05)]_[+2(1.35e-05)]_10_\ [+3(3.17e-05)]_19_[+1(1.26e-05)]_16 chr3R:5223411-5223531 4.10e-02 30_[+4(9.41e-05)]_82 chr3R:6908178-6908298 1.74e-06 45_[+1(1.26e-05)]_4_[+1(8.51e-05)]_\ 16_[+2(5.23e-05)]_11_[+2(3.39e-05)]_12 chr4:63484-63604 7.89e-01 120 chrX:22433052-22433172 1.00e+00 120 chr3R:21408507-21408627 3.64e-07 37_[+2(3.39e-05)]_6_[+1(3.94e-05)]_\ 3_[+4(5.13e-05)]_5_[+1(3.94e-05)]_3_[+4(5.13e-05)]_5_[+1(1.26e-05)]_13 chr4:313993-314113 9.22e-01 120 chr3L:27279148-27279268 3.32e-01 120 chr3L:5630655-5630775 4.20e-01 120 chr2R:10423620-10423740 8.34e-01 120 chr2R:5604824-5604944 8.05e-01 120 chr3L:21026714-21026834 6.30e-03 7_[+5(1.39e-05)]_105 chr2R:5251053-5251173 7.19e-02 120 chrX:16350177-16350297 1.26e-01 120 chr2L:10964560-10964680 1.12e-03 17_[+3(1.26e-05)]_13_[+3(1.26e-05)]_\ 39_[+1(1.26e-05)]_11_[+3(3.17e-05)]_8 chr3R:4232582-4232702 6.15e-01 120 chr2L:8478089-8478209 1.01e-07 19_[+2(1.35e-05)]_16_[+4(1.35e-05)]_\ 23_[+4(5.13e-05)]_3_[+1(1.26e-05)]_27 chr2R:17436527-17436647 3.43e-05 59_[+1(1.26e-05)]_2_[+3(1.26e-05)]_\ 43 chr2L:12617981-12618101 7.13e-02 70_[+5(1.39e-05)]_42 chr3L:16052350-16052470 6.00e-01 120 chr3L:17570235-17570355 3.63e-02 94_[+5(2.32e-05)]_18 chr3L:3789280-3789400 4.59e-07 65_[+3(1.26e-05)]_[+2(1.35e-05)]_39 chr3R:13794686-13794806 6.00e-01 120 chrX:2042374-2042494 2.76e-01 120 chr3L:6125087-6125207 7.18e-01 120 chr2R:10428535-10428655 4.70e-01 120 chr3R:10677651-10677771 6.20e-04 12_[+1(1.26e-05)]_22_[+1(3.11e-05)]_\ 17_[+1(1.26e-05)]_3_[+1(1.26e-05)]_34 chr3L:17563874-17563994 2.91e-02 112_[+5(4.59e-05)] chr2L:5093100-5093220 9.43e-01 120 chr2R:12344786-12344906 3.48e-01 120 chr2L:12520352-12520472 2.21e-04 40_[+3(3.17e-05)]_63_[+4(8.06e-05)]_\ 1 chr3L:25120526-25120646 2.13e-01 120 chr2R:10430005-10430125 8.81e-01 120 chr3R:4232795-4232915 8.04e-02 120 chr3L:27083940-27084060 1.07e-01 120 chr2R:4242986-4243106 7.64e-01 120 chr4:663215-663335 3.76e-01 120 chr2L:7065864-7065984 2.08e-01 120 chr3R:21589925-21590045 2.02e-04 45_[+1(1.26e-05)]_67 chr2L:5001434-5001554 1.16e-07 31_[+3(1.26e-05)]_14_[+1(3.94e-05)]_\ 3_[+2(1.35e-05)]_3_[+3(3.17e-05)]_37 chr2L:10298490-10298610 7.68e-07 32_[+4(9.41e-05)]_30_[+2(1.35e-05)]_\ 7_[+1(1.26e-05)]_27 chrX:8063504-8063624 4.08e-04 79_[+4(1.35e-05)]_5_[+2(1.35e-05)]_\ 20 chr2R:1345293-1345413 1.40e-01 120 chr2L:22121621-22121741 9.31e-01 120 chr2L:19583804-19583924 2.38e-01 120 chr3L:19140548-19140668 1.34e-06 14_[+1(1.26e-05)]_36_[+2(3.39e-05)]_\ 12_[+3(5.85e-05)]_34 chrX:15986842-15986962 2.00e-02 120 chrX:13783534-13783654 1.70e-02 84_[+3(8.37e-05)]_28 chr2L:8083734-8083854 9.49e-04 8_[+4(1.35e-05)]_104 chrX:17827107-17827227 2.29e-02 10_[+5(1.39e-05)]_[+5(1.39e-05)]_4_\ [+5(7.35e-05)]_55_[+5(1.39e-05)]_19 chr4:359825-359945 2.78e-01 120 chr2L:22169198-22169318 6.00e-01 120 chr2R:5293854-5293974 9.32e-02 99_[+2(8.16e-05)]_13 chrX:13257241-13257361 4.80e-04 25_[+2(1.35e-05)]_26_[+2(1.35e-05)]_\ 53 chr3L:3078591-3078711 3.62e-01 120 chr3L:4553525-4553645 6.56e-04 34_[+2(4.31e-05)]_17_[+2(3.39e-05)]_\ 53 chr3R:13840093-13840213 4.42e-03 61_[+1(3.11e-05)]_51 chrX:18783605-18783725 1.23e-01 120 chrX:4425142-4425262 4.87e-03 102_[+1(5.20e-05)]_10 chr3R:4812074-4812194 6.03e-01 120 chrX:16149158-16149278 5.14e-04 19_[+5(1.39e-05)]_82_[+2(1.35e-05)]_\ 3 chr3L:16381424-16381544 5.24e-01 120 chr2L:11445986-11446106 4.72e-03 82_[+4(2.27e-05)]_30 chr3R:8362513-8362633 8.60e-01 120 chr4:307995-308115 6.43e-01 120 chr3R:8191076-8191196 5.25e-05 28_[+2(1.35e-05)]_1_[+2(1.35e-05)]_\ 75 chr3R:21580221-21580341 7.38e-04 14_[+1(1.26e-05)]_40_[+1(1.26e-05)]_\ 10_[+3(3.17e-05)]_2_[+1(1.26e-05)]_22 chr3R:9550785-9550905 1.20e-01 37_[+5(4.59e-05)]_75 chr3R:8349533-8349653 8.88e-01 120 chr4:1061013-1061133 9.77e-01 120 chrX:16683938-16684058 6.37e-04 55_[+2(1.35e-05)]_3_[+2(1.35e-05)]_\ 9_[+4(5.13e-05)]_29 chr3R:13064214-13064334 2.08e-01 63_[+5(4.59e-05)]_49 chrX:12654298-12654418 7.47e-02 120 chr2L:15061248-15061368 9.09e-01 120 chrX:11714184-11714304 7.38e-02 5_[+5(4.59e-05)]_26_[+5(1.39e-05)]_\ 65_[+5(3.24e-05)] chr3L:12693403-12693523 4.57e-02 28_[+5(2.32e-05)]_84 chr3L:21026502-21026622 9.52e-01 120 chr3L:6969288-6969408 2.50e-01 120 chr2R:20111229-20111349 3.01e-05 33_[+1(5.20e-05)]_36_[+4(2.27e-05)]_\ 35 chrX:8061038-8061158 3.39e-04 41_[+3(1.26e-05)]_71 chr3R:31219842-31219962 7.07e-02 120 chr2R:20106530-20106650 7.77e-01 120 chrX:11137703-11137823 1.88e-03 55_[+5(5.51e-05)]_57 chr3L:7249310-7249430 5.72e-02 120 chr3R:16431788-16431908 8.93e-09 51_[+1(1.26e-05)]_17_[+2(1.35e-05)]_\ 36 chr2L:5980811-5980931 8.55e-01 120 chr2R:10117564-10117684 4.16e-04 68_[+1(1.26e-05)]_44 chrX:19887357-19887477 2.24e-03 82_[+4(6.02e-05)]_30 chr3R:4659909-4660029 1.61e-02 120 chr2L:11447732-11447852 4.07e-03 27_[+5(1.39e-05)]_85 chr2L:10339337-10339457 1.20e-01 120 chr2R:14362946-14363066 2.24e-01 120 chr2R:12588534-12588654 2.48e-01 120 chr3R:25265714-25265834 6.93e-01 120 chr3R:8181630-8181750 1.34e-01 120 chrX:13995021-13995141 5.21e-01 120 chr4:43822-43942 1.98e-01 120 chrX:16968667-16968787 4.21e-01 120 chr3R:15794305-15794425 8.63e-01 120 chr2L:7306928-7307048 6.78e-03 106_[+5(1.39e-05)]_6 chr2R:7011981-7012101 2.33e-01 120 chr2R:15931986-15932106 4.77e-02 45_[+4(3.16e-05)]_67 chrX:13128221-13128341 1.70e-05 16_[+1(1.26e-05)]_9_[+5(3.24e-05)]_\ 79 chr2L:15061484-15061604 3.60e-01 120 chrX:7015216-7015336 9.93e-01 120 chr3L:6059221-6059341 1.78e-03 58_[+2(3.39e-05)]_14_[+4(1.35e-05)]_\ 12_[+2(4.31e-05)]_12 chr2L:7426599-7426719 1.90e-01 120 chr3L:19062903-19063023 4.06e-03 23_[+2(1.35e-05)]_89 chr3L:18759367-18759487 1.58e-01 95_[+5(7.35e-05)]_17 chr2L:10506908-10507028 9.12e-02 120 chr3L:11206009-11206129 4.73e-01 120 chr3L:11010624-11010744 1.85e-02 77_[+5(1.39e-05)]_[+5(2.32e-05)]_11_\ [+5(6.43e-05)]_8 chr3R:26052398-26052518 9.63e-01 120 chr3L:2371979-2372099 9.76e-01 120 chr3R:27151034-27151154 4.45e-01 120 chrX:16385005-16385125 1.78e-01 120 chrX:15844251-15844371 9.37e-01 120 chr3L:17566737-17566857 1.22e-02 2_[+5(1.39e-05)]_110 chr3R:25193954-25194074 1.21e-02 47_[+1(3.11e-05)]_46_[+1(3.11e-05)]_\ 11 chr3R:5606656-5606776 4.83e-01 120 chr2L:3813398-3813518 7.84e-07 72_[+4(3.16e-05)]_8_[+2(1.35e-05)]_\ 2_[+1(3.11e-05)]_14 chr3R:26881420-26881540 2.38e-04 41_[+2(1.35e-05)]_30_[+2(1.35e-05)]_\ 15_[+2(1.35e-05)]_10 chr2L:10387902-10388022 4.99e-01 120 chr2L:21757526-21757646 2.20e-01 120 chr3L:7381632-7381752 5.41e-01 120 chr3R:21184890-21185010 1.30e-03 32_[+2(1.35e-05)]_7_[+2(1.35e-05)]_\ 13_[+2(1.35e-05)]_44 chr3R:15242479-15242599 8.24e-01 120 chr3L:3767949-3768069 3.80e-06 55_[+1(1.26e-05)]_12_[+2(4.31e-05)]_\ 37 chr2L:2753074-2753194 2.04e-01 120 chr3R:19861410-19861530 5.88e-01 120 chr3R:4334151-4334271 6.09e-02 77_[+2(8.16e-05)]_35 chr3R:14724257-14724377 1.59e-01 120 chr3R:12121289-12121409 1.10e-07 15_[+2(1.35e-05)]_8_[+1(1.26e-05)]_\ 30_[+1(6.03e-05)]_10_[+2(1.35e-05)]_25 chr2R:14214887-14215007 2.23e-01 120 chr2R:11891940-11892060 2.03e-02 120 chr2R:7533241-7533361 8.49e-01 120 chr4:67402-67522 1.40e-01 120 chr2L:18708619-18708739 4.75e-01 120 chr2L:6456005-6456125 5.34e-02 120 chr3R:16869475-16869595 5.62e-01 120 chr2L:4997530-4997650 6.47e-04 16_[+4(1.35e-05)]_10_[+2(1.35e-05)]_\ 78 chr3L:9451633-9451753 3.35e-01 120 chr3R:11882655-11882775 7.43e-01 120 chr3L:19928629-19928749 1.42e-02 120 chrX:16640703-16640823 5.83e-02 90_[+2(6.12e-05)]_22 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************