******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/EcR.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:13807453-13807573 1.0000 120 chr3L:18006486-18006606 1.0000 120 chr3L:18232051-18232171 1.0000 120 chr3L:18037140-18037260 1.0000 120 chr3L:18004786-18004906 1.0000 120 chr2L:4355209-4355329 1.0000 120 chrX:1968683-1968803 1.0000 120 chr3R:25009869-25009989 1.0000 120 chr3L:22192693-22192813 1.0000 120 chr3R:30691540-30691660 1.0000 120 chr2R:12736374-12736494 1.0000 120 chr3L:17499446-17499566 1.0000 120 chr2L:4634763-4634883 1.0000 120 chr3R:21898885-21899005 1.0000 120 chr3L:18824264-18824384 1.0000 120 chr3L:608044-608164 1.0000 120 chrX:1967242-1967362 1.0000 120 chr3L:21238408-21238528 1.0000 120 chr3R:9135254-9135374 1.0000 120 chr3L:18231185-18231305 1.0000 120 chr3L:5615906-5616026 1.0000 120 chr2R:24314832-24314952 1.0000 120 chr2R:7086710-7086830 1.0000 120 chr3L:10715893-10716013 1.0000 120 chrX:18676403-18676523 1.0000 120 chr3L:17980917-17981037 1.0000 120 chr2R:14075753-14075873 1.0000 120 chr2R:10847057-10847177 1.0000 120 chr2L:7104338-7104458 1.0000 120 chr3L:9550430-9550550 1.0000 120 chrX:18676938-18677058 1.0000 120 chr3R:21904511-21904631 1.0000 120 chr3L:16751387-16751507 1.0000 120 chr3L:18022057-18022177 1.0000 120 chrX:3733816-3733936 1.0000 120 chr3R:26893747-26893867 1.0000 120 chr3L:9383480-9383600 1.0000 120 chr3R:5573413-5573533 1.0000 120 chr2L:13885068-13885188 1.0000 120 chr2R:23717797-23717917 1.0000 120 chr2R:19550324-19550444 1.0000 120 chr2L:2925504-2925624 1.0000 120 chr3L:16695178-16695298 1.0000 120 chr2L:7750763-7750883 1.0000 120 chrX:1952154-1952274 1.0000 120 chr3L:18191680-18191800 1.0000 120 chr2L:7118308-7118428 1.0000 120 chr3L:16275526-16275646 1.0000 120 chr3R:18484939-18485059 1.0000 120 chrX:5925546-5925666 1.0000 120 chr3L:10371313-10371433 1.0000 120 chr3L:5636753-5636873 1.0000 120 chr3L:18172103-18172223 1.0000 120 chr2R:7751908-7752028 1.0000 120 chrX:6978123-6978243 1.0000 120 chr2R:20840137-20840257 1.0000 120 chr2L:4632726-4632846 1.0000 120 chr3R:17713475-17713595 1.0000 120 chr3R:7171506-7171626 1.0000 120 chr2R:6095999-6096119 1.0000 120 chr3L:18083022-18083142 1.0000 120 chr2R:14076572-14076692 1.0000 120 chr2L:18466795-18466915 1.0000 120 chr2L:13615771-13615891 1.0000 120 chrX:17112694-17112814 1.0000 120 chr3L:21884189-21884309 1.0000 120 chr3L:17927073-17927193 1.0000 120 chr2R:25006190-25006310 1.0000 120 chr3R:11614274-11614394 1.0000 120 chr2R:18568846-18568966 1.0000 120 chr2R:8994735-8994855 1.0000 120 chr3L:20934965-20935085 1.0000 120 chr3R:18788902-18789022 1.0000 120 chr2L:4228927-4229047 1.0000 120 chrX:3725198-3725318 1.0000 120 chr3R:9960039-9960159 1.0000 120 chrX:14817229-14817349 1.0000 120 chrX:11508441-11508561 1.0000 120 chr2R:18661373-18661493 1.0000 120 chr2R:14127100-14127220 1.0000 120 chr2R:17625231-17625351 1.0000 120 chr3R:4725482-4725602 1.0000 120 chr3R:29212158-29212278 1.0000 120 chrX:7008245-7008365 1.0000 120 chr3L:5626298-5626418 1.0000 120 chr3L:16241290-16241410 1.0000 120 chr3L:18020267-18020387 1.0000 120 chr2R:24307914-24308034 1.0000 120 chr2R:6751630-6751750 1.0000 120 chr3R:19081094-19081214 1.0000 120 chr2R:6123921-6124041 1.0000 120 chr3L:10781417-10781537 1.0000 120 chrX:18681521-18681641 1.0000 120 chr2R:6109007-6109127 1.0000 120 chrX:2788403-2788523 1.0000 120 chr3L:21508786-21508906 1.0000 120 chr3R:21923900-21924020 1.0000 120 chr3R:28628816-28628936 1.0000 120 chr3R:13790980-13791100 1.0000 120 chrX:10538988-10539108 1.0000 120 chr3R:16238473-16238593 1.0000 120 chr3L:3101263-3101383 1.0000 120 chr2L:4600161-4600281 1.0000 120 chr3L:4393635-4393755 1.0000 120 chr2L:19226100-19226220 1.0000 120 chr3R:22136677-22136797 1.0000 120 chr3R:26538804-26538924 1.0000 120 chr3R:29211540-29211660 1.0000 120 chr3L:5635767-5635887 1.0000 120 chr2L:15302010-15302130 1.0000 120 chr2L:14632949-14633069 1.0000 120 chrX:18801416-18801536 1.0000 120 chr3R:6110952-6111072 1.0000 120 chr3L:2472430-2472550 1.0000 120 chr2R:19533551-19533671 1.0000 120 chr3R:4677112-4677232 1.0000 120 chr3R:21890874-21890994 1.0000 120 chr2L:3107243-3107363 1.0000 120 chr2L:19143892-19144012 1.0000 120 chrX:3715920-3716040 1.0000 120 chr3R:21839112-21839232 1.0000 120 chr3L:22369718-22369838 1.0000 120 chrX:2359438-2359558 1.0000 120 chr2L:7200822-7200942 1.0000 120 chr2L:16594519-16594639 1.0000 120 chr3R:5282091-5282211 1.0000 120 chr3R:4418974-4419094 1.0000 120 chr3R:9173263-9173383 1.0000 120 chr3R:29070734-29070854 1.0000 120 chr3L:561157-561277 1.0000 120 chr3L:4732165-4732285 1.0000 120 chr3R:24023955-24024075 1.0000 120 chr2L:7486781-7486901 1.0000 120 chr2R:11717291-11717411 1.0000 120 chr2L:9213250-9213370 1.0000 120 chr2L:19540559-19540679 1.0000 120 chr3R:29300540-29300660 1.0000 120 chrX:16837296-16837416 1.0000 120 chr3L:5617410-5617530 1.0000 120 chr2R:12273498-12273618 1.0000 120 chr2L:16673370-16673490 1.0000 120 chr3L:21255368-21255488 1.0000 120 chr3L:18032164-18032284 1.0000 120 chr2L:218290-218410 1.0000 120 chr3L:22853078-22853198 1.0000 120 chr2R:19322823-19322943 1.0000 120 chr2L:7416922-7417042 1.0000 120 chr3R:18993033-18993153 1.0000 120 chr3R:8743960-8744080 1.0000 120 chr3L:284326-284446 1.0000 120 chr3R:31703316-31703436 1.0000 120 chr3L:5638431-5638551 1.0000 120 chr3R:16599753-16599873 1.0000 120 chr3R:30689336-30689456 1.0000 120 chr2L:20812358-20812478 1.0000 120 chrX:3721855-3721975 1.0000 120 chr2L:5873125-5873245 1.0000 120 chrX:268121-268241 1.0000 120 chrX:18779486-18779606 1.0000 120 chr3L:4416083-4416203 1.0000 120 chr3R:8915026-8915146 1.0000 120 chr2R:24820835-24820955 1.0000 120 chr4:1155323-1155443 1.0000 120 chr3R:12288012-12288132 1.0000 120 chr2L:5901388-5901508 1.0000 120 chr2L:14625340-14625460 1.0000 120 chrX:17356253-17356373 1.0000 120 chr3R:24299086-24299206 1.0000 120 chr2L:18482782-18482902 1.0000 120 chr2L:1739490-1739610 1.0000 120 chr3R:16125646-16125766 1.0000 120 chr2L:10792585-10792705 1.0000 120 chr3R:4916343-4916463 1.0000 120 chrX:19073156-19073276 1.0000 120 chr3L:18076011-18076131 1.0000 120 chrX:9881672-9881792 1.0000 120 chr3L:17996714-17996834 1.0000 120 chr3R:16136031-16136151 1.0000 120 chr3L:8855491-8855611 1.0000 120 chr3R:4687880-4688000 1.0000 120 chr3R:21639406-21639526 1.0000 120 chr2R:18906587-18906707 1.0000 120 chr2L:19905882-19906002 1.0000 120 chr3L:8784614-8784734 1.0000 120 chrX:10934344-10934464 1.0000 120 chr3L:5633353-5633473 1.0000 120 chr3R:11945275-11945395 1.0000 120 chr3L:16072710-16072830 1.0000 120 chr3L:18079237-18079357 1.0000 120 chr3L:22178032-22178152 1.0000 120 chr3R:31338622-31338742 1.0000 120 chr3L:18082142-18082262 1.0000 120 chr3R:14501769-14501889 1.0000 120 chr3R:4126983-4127103 1.0000 120 chr2L:14225644-14225764 1.0000 120 chr3L:21225781-21225901 1.0000 120 chr2L:18457515-18457635 1.0000 120 chrX:2358755-2358875 1.0000 120 chr3L:8057572-8057692 1.0000 120 chr3R:24018265-24018385 1.0000 120 chr3R:30472188-30472308 1.0000 120 chr2R:19809112-19809232 1.0000 120 chr2L:10752804-10752924 1.0000 120 chr3L:17981641-17981761 1.0000 120 chr2L:19987159-19987279 1.0000 120 chr3L:1211953-1212073 1.0000 120 chr2R:9679874-9679994 1.0000 120 chr3R:22351616-22351736 1.0000 120 chr3R:30344321-30344441 1.0000 120 chr2R:23716514-23716634 1.0000 120 chr3L:3784193-3784313 1.0000 120 chr2L:19540049-19540169 1.0000 120 chr3L:14464338-14464458 1.0000 120 chr3L:21045183-21045303 1.0000 120 chr3L:17988607-17988727 1.0000 120 chr3L:10625226-10625346 1.0000 120 chr2R:23426661-23426781 1.0000 120 chr2R:18883318-18883438 1.0000 120 chr3L:21901238-21901358 1.0000 120 chrX:1949559-1949679 1.0000 120 chr3L:960146-960266 1.0000 120 chr3L:12800273-12800393 1.0000 120 chr3L:10762900-10763020 1.0000 120 chrX:17518148-17518268 1.0000 120 chrX:1840178-1840298 1.0000 120 chr3R:5316889-5317009 1.0000 120 chrX:9483716-9483836 1.0000 120 chr3R:31944636-31944756 1.0000 120 chr3L:5618720-5618840 1.0000 120 chr3R:24019209-24019329 1.0000 120 chr3R:20791368-20791488 1.0000 120 chrX:8523327-8523447 1.0000 120 chr3R:27655672-27655792 1.0000 120 chr3R:6151887-6152007 1.0000 120 chrX:8092974-8093094 1.0000 120 chr3R:29830289-29830409 1.0000 120 chr3R:21941135-21941255 1.0000 120 chr3L:16060180-16060300 1.0000 120 chr3R:28691440-28691560 1.0000 120 chr2R:14317561-14317681 1.0000 120 chr3R:26250351-26250471 1.0000 120 chr3L:7993021-7993141 1.0000 120 chr3R:19085773-19085893 1.0000 120 chr3R:14462562-14462682 1.0000 120 chr3R:14474204-14474324 1.0000 120 chr3R:8788463-8788583 1.0000 120 chr2R:6105507-6105627 1.0000 120 chr3L:14534335-14534455 1.0000 120 chr2R:7204451-7204571 1.0000 120 chr2L:14685144-14685264 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_EcR/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/EcR.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.241 G 0.242 T 0.259 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.241 G 0.242 T 0.259 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTTCAWTG MEME-1 width = 8 sites = 99 llr = 752 E-value = 9.4e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::94:: pos.-specific C :::a::11 probability G a32:11:8 matrix T :78::59: bits 2.1 * 1.8 * * 1.6 * * 1.4 * ** * Relative 1.2 ***** ** Entropy 1.0 ***** ** (11.0 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTCATTG consensus GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21941135-21941255 65 1.64e-05 CAGCCAAAAA GTTCATTG AACCTGGCCC chr3L:3784193-3784313 86 1.64e-05 CTTGTGGCAA GTTCATTG AACCTCATTT chr3L:17981641-17981761 62 1.64e-05 CCCACCCAAA GTTCATTG CACTTGGTAT chr3R:4916343-4916463 48 1.64e-05 AAAGCGTGCG GTTCATTG AACGCCATGG chr3R:4418974-4419094 27 1.64e-05 GGCATCTAGG GTTCATTG ACATTCCCAG chr2R:6751630-6751750 17 1.64e-05 AACAGTCCAA GTTCATTG TTCGCCCGTT chr3L:5626298-5626418 30 1.64e-05 CGAATGGCAA GTTCATTG CTCCTAACCT chrX:14817229-14817349 66 1.64e-05 CACAGTCACA GTTCATTG AACCGTTAGA chr2L:18466795-18466915 34 1.64e-05 GAGTTTGCGA GTTCATTG AACGCCTTCG chr3R:21904511-21904631 22 1.64e-05 CGGCCCAAAG GTTCATTG ACGTGTCCGA chr3R:21898885-21899005 46 1.64e-05 TTTGGCCAAA GTTCATTG CACTTTTTGC chr2L:4355209-4355329 77 1.64e-05 GCGCCGCAGA GTTCATTG CCTTTATAGG chrX:17518148-17518268 93 3.27e-05 TTCTGCTAAA GTTCAATG CGCCCCCCTG chr3L:14464338-14464458 31 3.27e-05 AGACCGCGGG GTTCAATG CACCGACTGA chr2L:10752804-10752924 71 3.27e-05 GTAGGTTAGA GTTCAATG ATTGCACGAC chr3L:8057572-8057692 46 3.27e-05 gagggcgaaa gTTCAATG ACCTTTGACT chrX:3715920-3716040 61 3.27e-05 CGTTAGATCA GTTCAATG CACTTTTGCG chr3R:4677112-4677232 71 3.27e-05 TTAGGAAAGG GTTCAATG CACCCGTCAG chrX:3725198-3725318 23 3.27e-05 AAATTCGCAA GTTCAATG AACTTGCCAT chr3L:9383480-9383600 37 3.27e-05 CGAGACAAGG GTTCAATG CACTTGTCCA chr3L:18232051-18232171 68 3.27e-05 CCCAGGACAA GTTCAATG ACTCTGGGCT chr4:1155323-1155443 90 4.80e-05 gcaggtgcta ggtcattg accgggtgga chrX:18779486-18779606 9 4.80e-05 TACTCTCC GGTCATTG AACGCATTAT chr3L:284326-284446 71 4.80e-05 AACTTCATTT GGTCATTG GCTTTTAGTC chr2L:7416922-7417042 72 4.80e-05 TAATTTTGCT GGTCATTG AACTGCCGAA chr3L:22853078-22853198 39 4.80e-05 GCGTCAGCCA GGTCATTG ACTCGCTCCG chrX:18801416-18801536 74 4.80e-05 ACGGAAAAGA GGTCATTG TCGCATAATA chr3L:5615906-5616026 89 4.80e-05 AGTTACTTGC GGTCATTG GCTTTAActg chrX:2358755-2358875 43 6.33e-05 ACTAGGCGGG GTGCATTG AACCAATCGA chr2R:18906587-18906707 94 6.33e-05 ATTCTTTAGA GTGCATTG ACTTTGACTC chr2R:6095999-6096119 6 6.33e-05 ACGCA GTGCATTG TCGGCCTAAC chr2R:20840137-20840257 76 6.33e-05 CAGCAACGCA GTGCATTG ACATTGTTGC chr2R:24314832-24314952 92 6.33e-05 GCCCGGGGAA GTGCATTG CACTCTAGTA chr3L:8784614-8784734 112 7.86e-05 GTTCTTAACT GGTCAATG A chr2R:19322823-19322943 50 7.86e-05 AACCGAATGG GGTCAATG AATTTGCCAT chrX:2788403-2788523 68 7.86e-05 ATTAATCCAG GGTCAATG ACCTCCAATA chr3R:5573413-5573533 57 7.86e-05 CCAAGTACGG GGTCAATG CCCgctggcc chr2R:14075753-14075873 53 7.86e-05 TCCGCCAGGA GGTCAATG ACGTGTCTTC chr3R:22351616-22351736 86 9.38e-05 ATGCAAACGA GTGCAATG CTCCATGAAT chr3L:1211953-1212073 70 9.38e-05 CCACTGATTT GTGCAATG CCAAGAAAGT chrX:16837296-16837416 12 9.38e-05 ATGAAAACCA GTGCAATG ACTCGAGATG chr3R:4725482-4725602 75 9.38e-05 GCGAAGTGAA GTGCAATG CTCTGGATTT chr2R:25006190-25006310 30 9.38e-05 AACACAACAA GTGCAATG ACGCCGCATG chr2L:4634763-4634883 16 9.38e-05 CACGTAAAAA GTGCAATG GCCTTAAGTG chr3R:14474204-14474324 92 1.09e-04 TATCAGTCGA GTTCAGTG CAGTTGTCTT chr2R:23426661-23426781 62 1.09e-04 GGCTACTGCA GTTCAGTG AACCTGTAGC chr2L:14625340-14625460 26 1.09e-04 TTTGTCGCGC GTTCAGTG AACTCATTTA chr3R:9135254-9135374 71 1.09e-04 TGAAACTGAG GTTCAGTG AACTTTTCGC chrX:1967242-1967362 4 1.09e-04 CAG GTTCAGTG CGGTTCAGCC chr2L:16594519-16594639 78 1.24e-04 CAACGATGCA GTTCATCG ACCGGCAATG chr3R:24019209-24019329 44 1.41e-04 GGTTACTCCG GTTCATTC ACTCCACCAC chr2L:19987159-19987279 76 1.41e-04 TTTGCGCTCA GTTCATTC AACTCACAAT chr3R:24299086-24299206 6 1.41e-04 TAGAG GTTCATTC CGGTGGATCT chr2R:19533551-19533671 11 1.41e-04 TAATTCCCCC GTTCATTC ACTCGCTTCG chrX:3733816-3733936 36 1.41e-04 TCTCATTACA GTTCATTC ACCCAAAAGA chr3R:13807453-13807573 49 1.41e-04 TTCTCTGCGA GTTCATTC AACCTCGCCC chr3L:5618720-5618840 60 1.56e-04 AAGAACCCAA GTTCAACG CACTCGGTTG chr3L:12800273-12800393 75 1.56e-04 aaaaaaaaTG GTTCAACG AACTGGGCAG chr2R:6123921-6124041 34 1.56e-04 AAAACGAACG GTTCAACG CACCTGGGCG chr3R:18788902-18789022 30 1.56e-04 GCTCACTGCA GTTCAACG AACTGGCATG chr2R:7751908-7752028 18 1.56e-04 CTAAAAGTTC GTTCAACG CTGCATtgta chr2R:12736374-12736494 32 1.56e-04 ATTGAGGAGG GTTCAACG AACTGCCAGC chr3R:18993033-18993153 91 1.86e-04 TTCACTTAAG GTTCAATC AAGTGCCCAC chr3L:10715893-10716013 69 1.86e-04 agtcTTCTGC GGGCATTG acacacaaca chr3R:6110952-6111072 65 2.16e-04 ATCTCTCTGC GGGCAATG CACAAACTGA chr3R:17713475-17713595 72 2.16e-04 CGACATAAAA GTTCGTTG ACTCCCATTC chrX:6978123-6978243 8 2.16e-04 CAACTGG GGGCAATG CACCTCCAGT chr2R:19550324-19550444 13 2.16e-04 AATTGAACTC GTTCGTTG TATCTTTGCC chrX:18676403-18676523 101 2.16e-04 TGGTTTGGTG GTTCGTTG GCGGTGCTAG chr3R:30472188-30472308 27 2.31e-04 TATAATGAGA GTTCGATG AACTGGTCAA chr3R:29300540-29300660 69 2.74e-04 TAACGAGTAC GTGCAGTG CCGCTCCCCA chr3R:21839112-21839232 18 2.74e-04 CGTGGCTACT GTGCAGTG CTTTAGCTAT chr2L:7750763-7750883 40 2.74e-04 TTCGGCTCAA GTGCAGTG AACCCGTTCG chr3L:18004786-18004906 4 2.74e-04 GGG GTGCAGTG GGAATTAATC chr3R:19085773-19085893 92 3.04e-04 TACATAGGTC GGTCATTC ACCGCTAGAT chrX:9483716-9483836 68 3.04e-04 acgaCAAAAG GGTCATTC ACATTGCGGT chr2L:13615771-13615891 91 3.04e-04 AGTTACCGTT GGTCATTC AACTCGCGGT chr3R:25009869-25009989 56 3.04e-04 ATGCGCGCCG GGTCATTC AACTTGTTGT chrX:268121-268241 27 3.33e-04 TAGATCAGCG GGTCAACG TCCCGTGGGC chr3L:22369718-22369838 108 3.33e-04 AGAGCCCCCG GTGCATTC ACCTA chr2R:8994735-8994855 86 3.33e-04 GCCGCAAATC GGTCAACG GGACGCAGGG chr3R:18484939-18485059 50 3.33e-04 GTGCCGGGCG GTGCATTC ACCTCTTGCG chr2R:23717797-23717917 9 3.33e-04 TGCAGCGG GGTCAACG AACTGGCCGC chr3L:4416083-4416203 76 3.63e-04 AAACGCGGTT GTGCAACG CAAATGCATT chr2L:19226100-19226220 108 3.63e-04 CAAATGCAGT GTGCAACG GGAAA chr3L:18022057-18022177 18 3.63e-04 GCGGATCAAG GTGCAACG GTGGCAGCAT chr3R:6151887-6152007 57 3.95e-04 CAGGCTTCGG GTTCATTA GCTCGAGGCT chrX:17356253-17356373 9 3.95e-04 TGGCGTCA GTTCATTA CAGGTGGTTG chr3L:5617410-5617530 84 4.10e-04 TTACAAAAAC GGTCGTTG AACCTGCTGA chr2L:4228927-4229047 49 4.10e-04 GCTAGCACTT GGTCGTTG GCCCCGCGGA chrX:1952154-1952274 18 4.10e-04 CCAACTTTGG GGTCGTTG GTGGTCGTTA chr2R:7086710-7086830 28 4.10e-04 GCCAGGTCCA GGTCGTTG GCAGCCGCTG chr2R:18883318-18883438 64 4.56e-04 GCTTCAAGAA GTTCAGCG CAGTTCAGAG chr3R:31338622-31338742 65 4.56e-04 AATTTCCGCT GTGCGTTG AGGCGCTGCC chr2R:10847057-10847177 40 4.56e-04 ACTTGCAGGA GTTCAATA GCATAGAAAC chr3L:17980917-17981037 85 4.56e-04 aaTTCGGCGG GTTCAATA AACCCAACCG chrX:5925546-5925666 63 5.46e-04 CTGTTTTTTT TTTCATTG TTCTACCCGC chr3R:29830289-29830409 54 6.20e-04 AGTGTGCTCA TTTCAATG CTGCAGATCG chr3R:24023955-24024075 97 6.20e-04 GTGGAGCAAC TTTCAATG TTTTCATTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21941135-21941255 1.6e-05 64_[+1]_48 chr3L:3784193-3784313 1.6e-05 85_[+1]_27 chr3L:17981641-17981761 1.6e-05 61_[+1]_51 chr3R:4916343-4916463 1.6e-05 47_[+1]_65 chr3R:4418974-4419094 1.6e-05 26_[+1]_86 chr2R:6751630-6751750 1.6e-05 16_[+1]_96 chr3L:5626298-5626418 1.6e-05 29_[+1]_83 chrX:14817229-14817349 1.6e-05 65_[+1]_47 chr2L:18466795-18466915 1.6e-05 33_[+1]_79 chr3R:21904511-21904631 1.6e-05 21_[+1]_91 chr3R:21898885-21899005 1.6e-05 45_[+1]_67 chr2L:4355209-4355329 1.6e-05 76_[+1]_36 chrX:17518148-17518268 3.3e-05 92_[+1]_20 chr3L:14464338-14464458 3.3e-05 30_[+1]_82 chr2L:10752804-10752924 3.3e-05 70_[+1]_42 chr3L:8057572-8057692 3.3e-05 45_[+1]_67 chrX:3715920-3716040 3.3e-05 60_[+1]_52 chr3R:4677112-4677232 3.3e-05 70_[+1]_42 chrX:3725198-3725318 3.3e-05 22_[+1]_90 chr3L:9383480-9383600 3.3e-05 36_[+1]_76 chr3L:18232051-18232171 3.3e-05 67_[+1]_45 chr4:1155323-1155443 4.8e-05 89_[+1]_23 chrX:18779486-18779606 4.8e-05 8_[+1]_104 chr3L:284326-284446 4.8e-05 70_[+1]_42 chr2L:7416922-7417042 4.8e-05 71_[+1]_41 chr3L:22853078-22853198 4.8e-05 38_[+1]_74 chrX:18801416-18801536 4.8e-05 73_[+1]_39 chr3L:5615906-5616026 4.8e-05 88_[+1]_24 chrX:2358755-2358875 6.3e-05 42_[+1]_70 chr2R:18906587-18906707 6.3e-05 93_[+1]_19 chr2R:6095999-6096119 6.3e-05 5_[+1]_107 chr2R:20840137-20840257 6.3e-05 75_[+1]_37 chr2R:24314832-24314952 6.3e-05 91_[+1]_21 chr3L:8784614-8784734 7.9e-05 111_[+1]_1 chr2R:19322823-19322943 7.9e-05 49_[+1]_63 chrX:2788403-2788523 7.9e-05 67_[+1]_45 chr3R:5573413-5573533 7.9e-05 56_[+1]_56 chr2R:14075753-14075873 7.9e-05 52_[+1]_60 chr3R:22351616-22351736 9.4e-05 85_[+1]_27 chr3L:1211953-1212073 9.4e-05 69_[+1]_43 chrX:16837296-16837416 9.4e-05 11_[+1]_101 chr3R:4725482-4725602 9.4e-05 74_[+1]_38 chr2R:25006190-25006310 9.4e-05 29_[+1]_83 chr2L:4634763-4634883 9.4e-05 15_[+1]_97 chr3R:14474204-14474324 0.00011 91_[+1]_21 chr2R:23426661-23426781 0.00011 61_[+1]_51 chr2L:14625340-14625460 0.00011 25_[+1]_87 chr3R:9135254-9135374 0.00011 70_[+1]_42 chrX:1967242-1967362 0.00011 3_[+1]_109 chr2L:16594519-16594639 0.00012 77_[+1]_35 chr3R:24019209-24019329 0.00014 43_[+1]_69 chr2L:19987159-19987279 0.00014 75_[+1]_37 chr3R:24299086-24299206 0.00014 5_[+1]_107 chr2R:19533551-19533671 0.00014 10_[+1]_102 chrX:3733816-3733936 0.00014 35_[+1]_77 chr3R:13807453-13807573 0.00014 48_[+1]_64 chr3L:5618720-5618840 0.00016 59_[+1]_53 chr3L:12800273-12800393 0.00016 74_[+1]_38 chr2R:6123921-6124041 0.00016 33_[+1]_79 chr3R:18788902-18789022 0.00016 29_[+1]_83 chr2R:7751908-7752028 0.00016 17_[+1]_95 chr2R:12736374-12736494 0.00016 31_[+1]_81 chr3R:18993033-18993153 0.00019 90_[+1]_22 chr3L:10715893-10716013 0.00019 68_[+1]_44 chr3R:6110952-6111072 0.00022 64_[+1]_48 chr3R:17713475-17713595 0.00022 71_[+1]_41 chrX:6978123-6978243 0.00022 7_[+1]_105 chr2R:19550324-19550444 0.00022 12_[+1]_100 chrX:18676403-18676523 0.00022 100_[+1]_12 chr3R:30472188-30472308 0.00023 26_[+1]_86 chr3R:29300540-29300660 0.00027 68_[+1]_44 chr3R:21839112-21839232 0.00027 17_[+1]_95 chr2L:7750763-7750883 0.00027 39_[+1]_73 chr3L:18004786-18004906 0.00027 3_[+1]_109 chr3R:19085773-19085893 0.0003 91_[+1]_21 chrX:9483716-9483836 0.0003 67_[+1]_45 chr2L:13615771-13615891 0.0003 90_[+1]_22 chr3R:25009869-25009989 0.0003 55_[+1]_57 chrX:268121-268241 0.00033 26_[+1]_86 chr3L:22369718-22369838 0.00033 107_[+1]_5 chr2R:8994735-8994855 0.00033 85_[+1]_27 chr3R:18484939-18485059 0.00033 49_[+1]_63 chr2R:23717797-23717917 0.00033 8_[+1]_104 chr3L:4416083-4416203 0.00036 75_[+1]_37 chr2L:19226100-19226220 0.00036 107_[+1]_5 chr3L:18022057-18022177 0.00036 17_[+1]_95 chr3R:6151887-6152007 0.0004 56_[+1]_56 chrX:17356253-17356373 0.0004 8_[+1]_104 chr3L:5617410-5617530 0.00041 83_[+1]_29 chr2L:4228927-4229047 0.00041 48_[+1]_64 chrX:1952154-1952274 0.00041 17_[+1]_95 chr2R:7086710-7086830 0.00041 27_[+1]_85 chr2R:18883318-18883438 0.00046 63_[+1]_49 chr3R:31338622-31338742 0.00046 64_[+1]_48 chr2R:10847057-10847177 0.00046 39_[+1]_73 chr3L:17980917-17981037 0.00046 84_[+1]_28 chrX:5925546-5925666 0.00055 62_[+1]_50 chr3R:29830289-29830409 0.00062 53_[+1]_59 chr3R:24023955-24024075 0.00062 96_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTCAWTG width=8 seqs=99 chr3R:21941135-21941255 ( 65) GTTCATTG 1 chr3L:3784193-3784313 ( 86) GTTCATTG 1 chr3L:17981641-17981761 ( 62) GTTCATTG 1 chr3R:4916343-4916463 ( 48) GTTCATTG 1 chr3R:4418974-4419094 ( 27) GTTCATTG 1 chr2R:6751630-6751750 ( 17) GTTCATTG 1 chr3L:5626298-5626418 ( 30) GTTCATTG 1 chrX:14817229-14817349 ( 66) GTTCATTG 1 chr2L:18466795-18466915 ( 34) GTTCATTG 1 chr3R:21904511-21904631 ( 22) GTTCATTG 1 chr3R:21898885-21899005 ( 46) GTTCATTG 1 chr2L:4355209-4355329 ( 77) GTTCATTG 1 chrX:17518148-17518268 ( 93) GTTCAATG 1 chr3L:14464338-14464458 ( 31) GTTCAATG 1 chr2L:10752804-10752924 ( 71) GTTCAATG 1 chr3L:8057572-8057692 ( 46) GTTCAATG 1 chrX:3715920-3716040 ( 61) GTTCAATG 1 chr3R:4677112-4677232 ( 71) GTTCAATG 1 chrX:3725198-3725318 ( 23) GTTCAATG 1 chr3L:9383480-9383600 ( 37) GTTCAATG 1 chr3L:18232051-18232171 ( 68) GTTCAATG 1 chr4:1155323-1155443 ( 90) GGTCATTG 1 chrX:18779486-18779606 ( 9) GGTCATTG 1 chr3L:284326-284446 ( 71) GGTCATTG 1 chr2L:7416922-7417042 ( 72) GGTCATTG 1 chr3L:22853078-22853198 ( 39) GGTCATTG 1 chrX:18801416-18801536 ( 74) GGTCATTG 1 chr3L:5615906-5616026 ( 89) GGTCATTG 1 chrX:2358755-2358875 ( 43) GTGCATTG 1 chr2R:18906587-18906707 ( 94) GTGCATTG 1 chr2R:6095999-6096119 ( 6) GTGCATTG 1 chr2R:20840137-20840257 ( 76) GTGCATTG 1 chr2R:24314832-24314952 ( 92) GTGCATTG 1 chr3L:8784614-8784734 ( 112) GGTCAATG 1 chr2R:19322823-19322943 ( 50) GGTCAATG 1 chrX:2788403-2788523 ( 68) GGTCAATG 1 chr3R:5573413-5573533 ( 57) GGTCAATG 1 chr2R:14075753-14075873 ( 53) GGTCAATG 1 chr3R:22351616-22351736 ( 86) GTGCAATG 1 chr3L:1211953-1212073 ( 70) GTGCAATG 1 chrX:16837296-16837416 ( 12) GTGCAATG 1 chr3R:4725482-4725602 ( 75) GTGCAATG 1 chr2R:25006190-25006310 ( 30) GTGCAATG 1 chr2L:4634763-4634883 ( 16) GTGCAATG 1 chr3R:14474204-14474324 ( 92) GTTCAGTG 1 chr2R:23426661-23426781 ( 62) GTTCAGTG 1 chr2L:14625340-14625460 ( 26) GTTCAGTG 1 chr3R:9135254-9135374 ( 71) GTTCAGTG 1 chrX:1967242-1967362 ( 4) GTTCAGTG 1 chr2L:16594519-16594639 ( 78) GTTCATCG 1 chr3R:24019209-24019329 ( 44) GTTCATTC 1 chr2L:19987159-19987279 ( 76) GTTCATTC 1 chr3R:24299086-24299206 ( 6) GTTCATTC 1 chr2R:19533551-19533671 ( 11) GTTCATTC 1 chrX:3733816-3733936 ( 36) GTTCATTC 1 chr3R:13807453-13807573 ( 49) GTTCATTC 1 chr3L:5618720-5618840 ( 60) GTTCAACG 1 chr3L:12800273-12800393 ( 75) GTTCAACG 1 chr2R:6123921-6124041 ( 34) GTTCAACG 1 chr3R:18788902-18789022 ( 30) GTTCAACG 1 chr2R:7751908-7752028 ( 18) GTTCAACG 1 chr2R:12736374-12736494 ( 32) GTTCAACG 1 chr3R:18993033-18993153 ( 91) GTTCAATC 1 chr3L:10715893-10716013 ( 69) GGGCATTG 1 chr3R:6110952-6111072 ( 65) GGGCAATG 1 chr3R:17713475-17713595 ( 72) GTTCGTTG 1 chrX:6978123-6978243 ( 8) GGGCAATG 1 chr2R:19550324-19550444 ( 13) GTTCGTTG 1 chrX:18676403-18676523 ( 101) GTTCGTTG 1 chr3R:30472188-30472308 ( 27) GTTCGATG 1 chr3R:29300540-29300660 ( 69) GTGCAGTG 1 chr3R:21839112-21839232 ( 18) GTGCAGTG 1 chr2L:7750763-7750883 ( 40) GTGCAGTG 1 chr3L:18004786-18004906 ( 4) GTGCAGTG 1 chr3R:19085773-19085893 ( 92) GGTCATTC 1 chrX:9483716-9483836 ( 68) GGTCATTC 1 chr2L:13615771-13615891 ( 91) GGTCATTC 1 chr3R:25009869-25009989 ( 56) GGTCATTC 1 chrX:268121-268241 ( 27) GGTCAACG 1 chr3L:22369718-22369838 ( 108) GTGCATTC 1 chr2R:8994735-8994855 ( 86) GGTCAACG 1 chr3R:18484939-18485059 ( 50) GTGCATTC 1 chr2R:23717797-23717917 ( 9) GGTCAACG 1 chr3L:4416083-4416203 ( 76) GTGCAACG 1 chr2L:19226100-19226220 ( 108) GTGCAACG 1 chr3L:18022057-18022177 ( 18) GTGCAACG 1 chr3R:6151887-6152007 ( 57) GTTCATTA 1 chrX:17356253-17356373 ( 9) GTTCATTA 1 chr3L:5617410-5617530 ( 84) GGTCGTTG 1 chr2L:4228927-4229047 ( 49) GGTCGTTG 1 chrX:1952154-1952274 ( 18) GGTCGTTG 1 chr2R:7086710-7086830 ( 28) GGTCGTTG 1 chr2R:18883318-18883438 ( 64) GTTCAGCG 1 chr3R:31338622-31338742 ( 65) GTGCGTTG 1 chr2R:10847057-10847177 ( 40) GTTCAATA 1 chr3L:17980917-17981037 ( 85) GTTCAATA 1 chrX:5925546-5925666 ( 63) TTTCATTG 1 chr3R:29830289-29830409 ( 54) TTTCAATG 1 chr3R:24023955-24024075 ( 97) TTTCAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.27902 E= 9.4e-031 -1327 -1327 200 -309 -1327 -1327 12 151 -1327 -1327 0 155 -1327 205 -1327 -1327 182 -1327 -141 -1327 65 -1327 -126 94 -1327 -77 -1327 173 -268 -88 178 -1327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 9.4e-031 0.000000 0.000000 0.969697 0.030303 0.000000 0.000000 0.262626 0.737374 0.000000 0.000000 0.242424 0.757576 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.404040 0.000000 0.101010 0.494949 0.000000 0.141414 0.000000 0.858586 0.040404 0.131313 0.828283 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCAWTG MEME-1 regular expression -------------------------------------------------------------------------------- G[TG][TG]CA[TA]TG -------------------------------------------------------------------------------- Time 7.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCAGC MEME-2 width = 8 sites = 18 llr = 170 E-value = 7.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2::9:: pos.-specific C 2a::9::a probability G 8:1a1:a: matrix T ::7::1:: bits 2.1 * * ** 1.8 * * ** 1.6 * ***** 1.4 ** ***** Relative 1.2 ** ***** Entropy 1.0 ** ***** (13.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:960146-960266 99 1.33e-05 AAATCACGAT GCTGcagc agcaccacca chr3R:31703316-31703436 75 1.33e-05 TGCAGTTGCA GCTGCAGC CGACTTCGGC chr2L:7416922-7417042 8 1.33e-05 TCACGCC GCTGCAGC CATCTCTGTC chr2R:8994735-8994855 29 1.33e-05 gagccgagcc gCTGCAGC GCGACTTGTT chr2R:20840137-20840257 49 1.33e-05 CTCTAAACTT GCTGCAGC AACTCTTATC chrX:18676938-18677058 67 1.33e-05 ATGAACTCCC GCtgcagc agtgcagcag chr2R:12736374-12736494 96 1.33e-05 TCCCGCTGGA GCTGCAGC TTCTGGCTCT chr3R:21941135-21941255 3 2.65e-05 AT GCAGCAGC GGCGATGACA chr2L:19987159-19987279 37 2.65e-05 GTGTGTAGGG GCAGCAGC TTCGGCTTAT chr3L:20934965-20935085 24 2.65e-05 TATTATTACA GCAGCAGC TAACCACAAG chr3R:4687880-4688000 39 3.97e-05 TTCGTGCATG CCTGCAGC CGGATATTCA chr3L:5638431-5638551 73 3.97e-05 GCCTGAAGGA CCTGCAGC AGAAGCTCAG chr2R:14075753-14075873 73 3.97e-05 GTGTCTTCCG CCTGCAGC CATTCGAACC chr3L:17981641-17981761 21 5.20e-05 TCGCTTTTGA GCGGCAGC AGAGTTTTCC chrX:18681521-18681641 67 5.20e-05 CGCCACCCCA GCGGCAGC CCACTACTGT chr3L:284326-284446 95 6.54e-05 AGTCAATGCC GCTGGAGC TCGACCAACG chr3R:26538804-26538924 112 6.54e-05 TCAGCTATCT GCTGGAGC A chr3L:18172103-18172223 89 7.87e-05 CTGGATTATT GCTGCTGC TCGAGTGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:960146-960266 1.3e-05 98_[+2]_14 chr3R:31703316-31703436 1.3e-05 74_[+2]_38 chr2L:7416922-7417042 1.3e-05 7_[+2]_105 chr2R:8994735-8994855 1.3e-05 28_[+2]_84 chr2R:20840137-20840257 1.3e-05 48_[+2]_64 chrX:18676938-18677058 1.3e-05 66_[+2]_46 chr2R:12736374-12736494 1.3e-05 95_[+2]_17 chr3R:21941135-21941255 2.6e-05 2_[+2]_110 chr2L:19987159-19987279 2.6e-05 36_[+2]_76 chr3L:20934965-20935085 2.6e-05 23_[+2]_89 chr3R:4687880-4688000 4e-05 38_[+2]_74 chr3L:5638431-5638551 4e-05 72_[+2]_40 chr2R:14075753-14075873 4e-05 72_[+2]_40 chr3L:17981641-17981761 5.2e-05 20_[+2]_92 chrX:18681521-18681641 5.2e-05 66_[+2]_46 chr3L:284326-284446 6.5e-05 94_[+2]_18 chr3R:26538804-26538924 6.5e-05 111_[+2]_1 chr3L:18172103-18172223 7.9e-05 88_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCAGC width=8 seqs=18 chr3L:960146-960266 ( 99) GCTGCAGC 1 chr3R:31703316-31703436 ( 75) GCTGCAGC 1 chr2L:7416922-7417042 ( 8) GCTGCAGC 1 chr2R:8994735-8994855 ( 29) GCTGCAGC 1 chr2R:20840137-20840257 ( 49) GCTGCAGC 1 chrX:18676938-18677058 ( 67) GCTGCAGC 1 chr2R:12736374-12736494 ( 96) GCTGCAGC 1 chr3R:21941135-21941255 ( 3) GCAGCAGC 1 chr2L:19987159-19987279 ( 37) GCAGCAGC 1 chr3L:20934965-20935085 ( 24) GCAGCAGC 1 chr3R:4687880-4688000 ( 39) CCTGCAGC 1 chr3L:5638431-5638551 ( 73) CCTGCAGC 1 chr2R:14075753-14075873 ( 73) CCTGCAGC 1 chr3L:17981641-17981761 ( 21) GCGGCAGC 1 chrX:18681521-18681641 ( 67) GCGGCAGC 1 chr3L:284326-284446 ( 95) GCTGGAGC 1 chr3R:26538804-26538924 ( 112) GCTGGAGC 1 chr3L:18172103-18172223 ( 89) GCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 7.6e+003 -1081 -53 178 -1081 -1081 205 -1081 -1081 -63 -1081 -112 148 -1081 -1081 205 -1081 -1081 188 -112 -1081 187 -1081 -1081 -222 -1081 -1081 205 -1081 -1081 205 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 7.6e+003 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.111111 0.722222 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.944444 0.000000 0.000000 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCAGC MEME-2 regular expression -------------------------------------------------------------------------------- GCTGCAGC -------------------------------------------------------------------------------- Time 14.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAATGC MEME-3 width = 8 sites = 10 llr = 110 E-value = 4.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :aaaa::: pos.-specific C :::::::a probability G a:::::a: matrix T :::::a:: bits 2.1 ***** ** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAATGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16060180-16060300 1 1.62e-05 . GAAAATGC CGCTCAATGG chrX:8523327-8523447 70 1.62e-05 ACTCCCAGTG GAAAATGC GCCACCCCGA chr3R:22351616-22351736 37 1.62e-05 GCAGACAAAA GAAAATGC ATAAAAAAAG chr3R:31338622-31338742 13 1.62e-05 GGAAAATGTG GAAAATGC CATCGTAAAA chr3L:16072710-16072830 3 1.62e-05 CG GAAAATGC ATCCAACGAA chr3L:2472430-2472550 61 1.62e-05 CTTAAAATGT GAAAATGC GAATGACCCG chr3L:18020267-18020387 1 1.62e-05 . GAAAATGC ACTGCAAGGT chrX:11508441-11508561 111 1.62e-05 TCTTCGAGAT GAAAATGC CA chr2L:13885068-13885188 86 1.62e-05 TTGGACAAGC GAAAATGC TGGCAAATTT chr3L:18824264-18824384 79 1.62e-05 GACCGCTTCG GAAAATGC GTGTGCCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16060180-16060300 1.6e-05 [+3]_112 chrX:8523327-8523447 1.6e-05 69_[+3]_43 chr3R:22351616-22351736 1.6e-05 36_[+3]_76 chr3R:31338622-31338742 1.6e-05 12_[+3]_100 chr3L:16072710-16072830 1.6e-05 2_[+3]_110 chr3L:2472430-2472550 1.6e-05 60_[+3]_52 chr3L:18020267-18020387 1.6e-05 [+3]_112 chrX:11508441-11508561 1.6e-05 110_[+3]_2 chr2L:13885068-13885188 1.6e-05 85_[+3]_27 chr3L:18824264-18824384 1.6e-05 78_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAATGC width=8 seqs=10 chr3L:16060180-16060300 ( 1) GAAAATGC 1 chrX:8523327-8523447 ( 70) GAAAATGC 1 chr3R:22351616-22351736 ( 37) GAAAATGC 1 chr3R:31338622-31338742 ( 13) GAAAATGC 1 chr3L:16072710-16072830 ( 3) GAAAATGC 1 chr3L:2472430-2472550 ( 61) GAAAATGC 1 chr3L:18020267-18020387 ( 1) GAAAATGC 1 chrX:11508441-11508561 ( 111) GAAAATGC 1 chr2L:13885068-13885188 ( 86) GAAAATGC 1 chr3L:18824264-18824384 ( 79) GAAAATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 4.4e+003 -997 -997 205 -997 195 -997 -997 -997 195 -997 -997 -997 195 -997 -997 -997 195 -997 -997 -997 -997 -997 -997 195 -997 -997 205 -997 -997 205 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.4e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAATGC MEME-3 regular expression -------------------------------------------------------------------------------- GAAAATGC -------------------------------------------------------------------------------- Time 20.60 secs. ******************************************************************************** ******************************************************************************** MOTIF AWTGAACT MEME-4 width = 8 sites = 30 llr = 258 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a4::9a:: pos.-specific C :21:1:a1 probability G :1:a:::: matrix T :49::::9 bits 2.1 * * ** 1.8 * * ** 1.6 * * ** 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 * ****** (12.4 bits) 0.8 * ****** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel AATGAACT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20791368-20791488 47 1.73e-05 GTTTGGAGTC AATGAACT TTGTTGCTCG chr3L:18020267-18020387 102 1.73e-05 AGACAGGGCG AATGAACT GAACTGACCC chr2L:4632726-4632846 97 1.73e-05 TAAGTGGAGT AATGAACT CTTGGTTCGC chrX:18676938-18677058 56 1.73e-05 CGCAAAAGTC AATGAACT CCCGCtgcag chrX:8523327-8523447 22 3.47e-05 CCAGAGGAGC ATTGAACT TCTCGTCTGT chr2L:9213250-9213370 35 3.47e-05 CAGCGCATAA ATTGAACT ATTTTTATAA chr2R:19533551-19533671 82 3.47e-05 GCCGGCAGGC ATTGAACT CAGTGTGGAG chr2L:14632949-14633069 8 3.47e-05 CAGGTCC ATTGAACT CCCCTTGTGG chr2R:6109007-6109127 47 3.47e-05 AACGAGTTCT ATTGAACT TGGCACTGCT chr3R:9960039-9960159 70 3.47e-05 ttttcgttAC ATTGAACT TGATGGCCAT chr2R:19550324-19550444 4 3.47e-05 CCA ATTGAACT CGTTCGTTGT chrX:1949559-1949679 71 5.09e-05 GCAAAAGTTC ACTGAACT GGCCCATCAC chr2R:11717291-11717411 59 5.09e-05 GCTGGGGTAC ACTGAACT CTCACGGATT chr3R:6110952-6111072 78 5.09e-05 CAATGCACAA ACTGAACT AGCTTCGAAA chr2L:15302010-15302130 37 5.09e-05 AGGAGGGTTG ACTGAACT GGAGCTACAA chr3L:21884189-21884309 106 5.09e-05 TCGGAACTGA ACTGAACT GAGCTAA chr3R:8788463-8788583 45 1.16e-04 ACGGCCGGTT AACGAACT CGATCGACGT chrX:3715920-3716040 7 1.16e-04 CCAGCG AGTGAACT TTTCTTACTT chrX:10538988-10539108 64 1.16e-04 GAATGGTTGC AATGAACC AGAAAATTTG chrX:7008245-7008365 14 1.16e-04 AGACTGAGGC AACGAACT CGTGTCGCCC chr3R:11614274-11614394 51 1.16e-04 GTCAAGAGTT AACGAACT TTGGGGGGGG chr3R:7171506-7171626 77 1.16e-04 GCCGCAGCAT AACGAACT CAAATTCAAG chr3L:5636753-5636873 47 1.16e-04 tcagttcagt AATGCACT CCGTTCCGAG chr3L:17499446-17499566 66 1.16e-04 CAGATAAGTC AATGCACT TTTCGCCAGC chr3L:18006486-18006606 67 1.16e-04 GGCCAAGTTG AATGCACT TTTGGCCATG chr3R:13807453-13807573 68 1.16e-04 ACCTCGCCCC AGTGAACT TAGCTGAGGT chr2R:14317561-14317681 36 1.64e-04 CTGCAAGGTT ATTGAACC GCTTTATTCT chr2L:19540049-19540169 50 1.64e-04 TGGCCAAGTC ATTGAACC CGCGCCCAGA chr3R:21639406-21639526 75 1.64e-04 GTCTAGGTCC ATTGAACC CCAGAGTATG chrX:3721855-3721975 34 1.64e-04 GCAAACGGTT ATTGCACT TTGGAACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20791368-20791488 1.7e-05 46_[+4]_66 chr3L:18020267-18020387 1.7e-05 101_[+4]_11 chr2L:4632726-4632846 1.7e-05 96_[+4]_16 chrX:18676938-18677058 1.7e-05 55_[+4]_57 chrX:8523327-8523447 3.5e-05 21_[+4]_91 chr2L:9213250-9213370 3.5e-05 34_[+4]_78 chr2R:19533551-19533671 3.5e-05 81_[+4]_31 chr2L:14632949-14633069 3.5e-05 7_[+4]_105 chr2R:6109007-6109127 3.5e-05 46_[+4]_66 chr3R:9960039-9960159 3.5e-05 69_[+4]_43 chr2R:19550324-19550444 3.5e-05 3_[+4]_109 chrX:1949559-1949679 5.1e-05 70_[+4]_42 chr2R:11717291-11717411 5.1e-05 58_[+4]_54 chr3R:6110952-6111072 5.1e-05 77_[+4]_35 chr2L:15302010-15302130 5.1e-05 36_[+4]_76 chr3L:21884189-21884309 5.1e-05 105_[+4]_7 chr3R:8788463-8788583 0.00012 44_[+4]_68 chrX:3715920-3716040 0.00012 6_[+4]_106 chrX:10538988-10539108 0.00012 63_[+4]_49 chrX:7008245-7008365 0.00012 13_[+4]_99 chr3R:11614274-11614394 0.00012 50_[+4]_62 chr3R:7171506-7171626 0.00012 76_[+4]_36 chr3L:5636753-5636873 0.00012 46_[+4]_66 chr3L:17499446-17499566 0.00012 65_[+4]_47 chr3L:18006486-18006606 0.00012 66_[+4]_46 chr3R:13807453-13807573 0.00012 67_[+4]_45 chr2R:14317561-14317681 0.00016 35_[+4]_77 chr2L:19540049-19540169 0.00016 49_[+4]_63 chr3R:21639406-21639526 0.00016 74_[+4]_38 chrX:3721855-3721975 0.00016 33_[+4]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWTGAACT width=8 seqs=30 chr3R:20791368-20791488 ( 47) AATGAACT 1 chr3L:18020267-18020387 ( 102) AATGAACT 1 chr2L:4632726-4632846 ( 97) AATGAACT 1 chrX:18676938-18677058 ( 56) AATGAACT 1 chrX:8523327-8523447 ( 22) ATTGAACT 1 chr2L:9213250-9213370 ( 35) ATTGAACT 1 chr2R:19533551-19533671 ( 82) ATTGAACT 1 chr2L:14632949-14633069 ( 8) ATTGAACT 1 chr2R:6109007-6109127 ( 47) ATTGAACT 1 chr3R:9960039-9960159 ( 70) ATTGAACT 1 chr2R:19550324-19550444 ( 4) ATTGAACT 1 chrX:1949559-1949679 ( 71) ACTGAACT 1 chr2R:11717291-11717411 ( 59) ACTGAACT 1 chr3R:6110952-6111072 ( 78) ACTGAACT 1 chr2L:15302010-15302130 ( 37) ACTGAACT 1 chr3L:21884189-21884309 ( 106) ACTGAACT 1 chr3R:8788463-8788583 ( 45) AACGAACT 1 chrX:3715920-3716040 ( 7) AGTGAACT 1 chrX:10538988-10539108 ( 64) AATGAACC 1 chrX:7008245-7008365 ( 14) AACGAACT 1 chr3R:11614274-11614394 ( 51) AACGAACT 1 chr3R:7171506-7171626 ( 77) AACGAACT 1 chr3L:5636753-5636873 ( 47) AATGCACT 1 chr3L:17499446-17499566 ( 66) AATGCACT 1 chr3L:18006486-18006606 ( 67) AATGCACT 1 chr3R:13807453-13807573 ( 68) AGTGAACT 1 chr2R:14317561-14317681 ( 36) ATTGAACC 1 chr2L:19540049-19540169 ( 50) ATTGAACC 1 chr3R:21639406-21639526 ( 75) ATTGAACC 1 chrX:3721855-3721975 ( 34) ATTGCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5523 E= 1.1e+004 195 -1155 -1155 -1155 63 -53 -186 50 -1155 -85 -1155 174 -1155 -1155 205 -1155 175 -85 -1155 -1155 195 -1155 -1155 -1155 -1155 205 -1155 -1155 -1155 -85 -1155 174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.1e+004 1.000000 0.000000 0.000000 0.000000 0.400000 0.166667 0.066667 0.366667 0.000000 0.133333 0.000000 0.866667 0.000000 0.000000 1.000000 0.000000 0.866667 0.133333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.133333 0.000000 0.866667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTGAACT MEME-4 regular expression -------------------------------------------------------------------------------- A[AT]TGAACT -------------------------------------------------------------------------------- Time 26.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGGCCA MEME-5 width = 8 sites = 17 llr = 169 E-value = 1.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 3::::aa: probability G :3:aa::: matrix T 77a::::: bits 2.1 ***** 1.8 ****** 1.6 ****** 1.4 ****** Relative 1.2 ****** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGCCA consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16060180-16060300 102 1.52e-05 GCTTTTTCGG TTTGGCCA TGCAAATGGA chr3R:31944636-31944756 47 1.52e-05 CGTTGACCAT TTTGGCCA CAAAAACTAA chr2R:19533551-19533671 106 1.52e-05 GGAGCTGCCT TTTGGCCA AAAGCTG chrX:18681521-18681641 47 1.52e-05 GATCTTTGGT TTTGGCCA CCCGCCACCC chr3R:19081094-19081214 48 1.52e-05 TCTCGGTATC TTTGGCCA CTCCACTCTC chr3R:21898885-21899005 36 1.52e-05 AATTCAGCGC TTTGGCCA AAGTTCATTG chr3L:18006486-18006606 75 1.52e-05 TGAATGCACT TTTGGCCA TGTGTTTGCG chr3R:29830289-29830409 21 4.37e-05 TTGATCGCAT TGTGGCCA GAGGCCGTAC chr2L:19540049-19540169 38 4.37e-05 AGCCCCTTCC TGTGGCCA AGTCATTGAA chr3R:14501769-14501889 113 4.37e-05 ACAACTTTGT CTTGGCCA chrX:19073156-19073276 7 4.37e-05 GTTATC TGTGGCCA AGATAAGCAA chr2L:5901388-5901508 48 4.37e-05 GGTTATTGGC CTTGGCCA GTCTGACAGT chr3R:9960039-9960159 26 4.37e-05 ATTGCCATGA CTTGGCCA Agttctcgtt chr3L:18172103-18172223 13 4.37e-05 TGCTGACTGA TGTGGCCA TGGATGGCAC chr3L:16275526-16275646 96 4.37e-05 TTCCCCCCTC CTTGGCCA CCTTGTATTG chr3L:9550430-9550550 85 4.37e-05 TCTGTGTGTG TGTGGCCA CAAAATGGCG chr3L:17499446-17499566 1 4.37e-05 . CTTGGCCA CATGCCATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16060180-16060300 1.5e-05 101_[+5]_11 chr3R:31944636-31944756 1.5e-05 46_[+5]_66 chr2R:19533551-19533671 1.5e-05 105_[+5]_7 chrX:18681521-18681641 1.5e-05 46_[+5]_66 chr3R:19081094-19081214 1.5e-05 47_[+5]_65 chr3R:21898885-21899005 1.5e-05 35_[+5]_77 chr3L:18006486-18006606 1.5e-05 74_[+5]_38 chr3R:29830289-29830409 4.4e-05 20_[+5]_92 chr2L:19540049-19540169 4.4e-05 37_[+5]_75 chr3R:14501769-14501889 4.4e-05 112_[+5] chrX:19073156-19073276 4.4e-05 6_[+5]_106 chr2L:5901388-5901508 4.4e-05 47_[+5]_65 chr3R:9960039-9960159 4.4e-05 25_[+5]_87 chr3L:18172103-18172223 4.4e-05 12_[+5]_100 chr3L:16275526-16275646 4.4e-05 95_[+5]_17 chr3L:9550430-9550550 4.4e-05 84_[+5]_28 chr3L:17499446-17499566 4.4e-05 [+5]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGGCCA width=8 seqs=17 chr3L:16060180-16060300 ( 102) TTTGGCCA 1 chr3R:31944636-31944756 ( 47) TTTGGCCA 1 chr2R:19533551-19533671 ( 106) TTTGGCCA 1 chrX:18681521-18681641 ( 47) TTTGGCCA 1 chr3R:19081094-19081214 ( 48) TTTGGCCA 1 chr3R:21898885-21899005 ( 36) TTTGGCCA 1 chr3L:18006486-18006606 ( 75) TTTGGCCA 1 chr3R:29830289-29830409 ( 21) TGTGGCCA 1 chr2L:19540049-19540169 ( 38) TGTGGCCA 1 chr3R:14501769-14501889 ( 113) CTTGGCCA 1 chrX:19073156-19073276 ( 7) TGTGGCCA 1 chr2L:5901388-5901508 ( 48) CTTGGCCA 1 chr3R:9960039-9960159 ( 26) CTTGGCCA 1 chr3L:18172103-18172223 ( 13) TGTGGCCA 1 chr3L:16275526-16275646 ( 96) CTTGGCCA 1 chr3L:9550430-9550550 ( 85) TGTGGCCA 1 chr3L:17499446-17499566 ( 1) CTTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 1.0e+002 -1073 29 -1073 145 -1073 -1073 28 145 -1073 -1073 -1073 195 -1073 -1073 205 -1073 -1073 -1073 205 -1073 -1073 205 -1073 -1073 -1073 205 -1073 -1073 195 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.0e+002 0.000000 0.294118 0.000000 0.705882 0.000000 0.000000 0.294118 0.705882 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-5 regular expression -------------------------------------------------------------------------------- [TC][TG]TGGCCA -------------------------------------------------------------------------------- Time 33.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13807453-13807573 3.38e-03 120 chr3L:18006486-18006606 1.48e-03 74_[+5(1.52e-05)]_38 chr3L:18232051-18232171 1.03e-01 67_[+1(3.27e-05)]_45 chr3L:18037140-18037260 8.35e-02 120 chr3L:18004786-18004906 1.08e-01 120 chr2L:4355209-4355329 5.18e-03 76_[+1(1.64e-05)]_36 chrX:1968683-1968803 4.23e-02 120 chr3R:25009869-25009989 1.94e-02 120 chr3L:22192693-22192813 1.71e-01 120 chr3R:30691540-30691660 2.76e-01 120 chr2R:12736374-12736494 5.54e-05 95_[+2(1.33e-05)]_17 chr3L:17499446-17499566 2.42e-03 [+5(4.37e-05)]_112 chr2L:4634763-4634883 7.55e-03 15_[+1(9.38e-05)]_97 chr3R:21898885-21899005 1.46e-04 35_[+5(1.52e-05)]_2_[+1(1.64e-05)]_\ 67 chr3L:18824264-18824384 1.14e-02 78_[+3(1.62e-05)]_34 chr3L:608044-608164 6.18e-01 120 chrX:1967242-1967362 1.32e-01 120 chr3L:21238408-21238528 5.25e-01 120 chr3R:9135254-9135374 3.99e-03 120 chr3L:18231185-18231305 1.40e-01 120 chr3L:5615906-5616026 4.15e-02 88_[+1(4.80e-05)]_24 chr2R:24314832-24314952 4.53e-03 91_[+1(6.33e-05)]_21 chr2R:7086710-7086830 5.87e-03 41_[+2(7.87e-05)]_71 chr3L:10715893-10716013 3.12e-01 120 chrX:18676403-18676523 3.03e-01 120 chr3L:17980917-17981037 1.17e-01 120 chr2R:14075753-14075873 5.40e-03 52_[+1(7.86e-05)]_12_[+2(3.97e-05)]_\ 40 chr2R:10847057-10847177 1.49e-01 120 chr2L:7104338-7104458 6.06e-02 120 chr3L:9550430-9550550 1.85e-02 84_[+5(4.37e-05)]_28 chrX:18676938-18677058 4.74e-04 55_[+4(1.73e-05)]_3_[+2(1.33e-05)]_\ 46 chr3R:21904511-21904631 1.07e-02 21_[+1(1.64e-05)]_91 chr3L:16751387-16751507 3.07e-01 120 chr3L:18022057-18022177 4.87e-02 120 chrX:3733816-3733936 3.71e-01 120 chr3R:26893747-26893867 1.38e-01 120 chr3L:9383480-9383600 5.06e-04 36_[+1(3.27e-05)]_76 chr3R:5573413-5573533 1.22e-01 56_[+1(7.86e-05)]_56 chr2L:13885068-13885188 6.14e-02 85_[+3(1.62e-05)]_27 chr2R:23717797-23717917 3.34e-02 120 chr2R:19550324-19550444 5.89e-03 3_[+4(3.47e-05)]_109 chr2L:2925504-2925624 7.93e-03 120 chr3L:16695178-16695298 7.21e-01 120 chr2L:7750763-7750883 9.64e-03 120 chrX:1952154-1952274 1.03e-01 120 chr3L:18191680-18191800 2.84e-01 120 chr2L:7118308-7118428 9.18e-01 120 chr3L:16275526-16275646 9.89e-02 95_[+5(4.37e-05)]_17 chr3R:18484939-18485059 3.09e-02 120 chrX:5925546-5925666 9.41e-02 120 chr3L:10371313-10371433 2.78e-01 120 chr3L:5636753-5636873 7.11e-02 120 chr3L:18172103-18172223 1.48e-02 12_[+5(4.37e-05)]_68_[+2(7.87e-05)]_\ 24 chr2R:7751908-7752028 2.93e-01 120 chrX:6978123-6978243 2.45e-02 120 chr2R:20840137-20840257 2.47e-03 48_[+2(1.33e-05)]_19_[+1(6.33e-05)]_\ 37 chr2L:4632726-4632846 1.62e-02 96_[+4(1.73e-05)]_16 chr3R:17713475-17713595 3.97e-01 120 chr3R:7171506-7171626 1.32e-02 34_[+2(6.54e-05)]_78 chr2R:6095999-6096119 1.98e-01 5_[+1(6.33e-05)]_107 chr3L:18083022-18083142 9.56e-02 120 chr2R:14076572-14076692 4.32e-02 120 chr2L:18466795-18466915 3.25e-03 33_[+1(1.64e-05)]_79 chr2L:13615771-13615891 1.25e-02 120 chrX:17112694-17112814 5.02e-01 120 chr3L:21884189-21884309 9.87e-02 100_[+4(5.09e-05)]_12 chr3L:17927073-17927193 8.42e-01 120 chr2R:25006190-25006310 8.22e-02 29_[+1(9.38e-05)]_83 chr3R:11614274-11614394 1.47e-01 120 chr2R:18568846-18568966 1.36e-01 120 chr2R:8994735-8994855 1.46e-02 28_[+2(1.33e-05)]_84 chr3L:20934965-20935085 7.36e-02 23_[+2(2.65e-05)]_89 chr3R:18788902-18789022 1.52e-02 120 chr2L:4228927-4229047 1.79e-01 120 chrX:3725198-3725318 4.35e-04 26_[+4(1.73e-05)]_86 chr3R:9960039-9960159 1.00e-03 25_[+5(4.37e-05)]_36_[+4(3.47e-05)]_\ 43 chrX:14817229-14817349 9.93e-04 65_[+1(1.64e-05)]_47 chrX:11508441-11508561 1.00e-02 110_[+3(1.62e-05)]_2 chr2R:18661373-18661493 3.10e-01 120 chr2R:14127100-14127220 2.83e-01 120 chr2R:17625231-17625351 8.30e-01 120 chr3R:4725482-4725602 2.59e-01 74_[+1(9.38e-05)]_38 chr3R:29212158-29212278 1.55e-01 120 chrX:7008245-7008365 3.11e-02 120 chr3L:5626298-5626418 7.93e-02 29_[+1(1.64e-05)]_83 chr3L:16241290-16241410 3.42e-01 120 chr3L:18020267-18020387 2.92e-04 [+3(1.62e-05)]_93_[+4(1.73e-05)]_11 chr2R:24307914-24308034 2.05e-01 120 chr2R:6751630-6751750 1.75e-01 16_[+1(1.64e-05)]_96 chr3R:19081094-19081214 2.32e-02 47_[+5(1.52e-05)]_65 chr2R:6123921-6124041 1.75e-02 120 chr3L:10781417-10781537 3.68e-01 120 chrX:18681521-18681641 1.55e-03 46_[+5(1.52e-05)]_12_[+2(5.20e-05)]_\ 46 chr2R:6109007-6109127 3.05e-02 46_[+4(3.47e-05)]_66 chrX:2788403-2788523 1.39e-01 67_[+1(7.86e-05)]_45 chr3L:21508786-21508906 6.65e-01 120 chr3R:21923900-21924020 8.47e-01 120 chr3R:28628816-28628936 7.49e-01 120 chr3R:13790980-13791100 6.14e-01 120 chrX:10538988-10539108 2.24e-02 120 chr3R:16238473-16238593 3.85e-01 120 chr3L:3101263-3101383 3.42e-01 120 chr2L:4600161-4600281 1.24e-01 120 chr3L:4393635-4393755 2.51e-01 120 chr2L:19226100-19226220 3.59e-02 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chrX:1949559-1949679 1.48e-02 70_[+4(5.09e-05)]_42 chr3L:960146-960266 2.28e-02 98_[+2(1.33e-05)]_14 chr3L:12800273-12800393 2.50e-03 120 chr3L:10762900-10763020 5.00e-01 120 chrX:17518148-17518268 7.43e-03 92_[+1(3.27e-05)]_20 chrX:1840178-1840298 5.90e-01 120 chr3R:5316889-5317009 7.27e-01 120 chrX:9483716-9483836 9.13e-02 120 chr3R:31944636-31944756 5.26e-02 46_[+5(1.52e-05)]_66 chr3L:5618720-5618840 6.27e-02 120 chr3R:24019209-24019329 5.45e-02 120 chr3R:20791368-20791488 1.39e-01 46_[+4(1.73e-05)]_66 chrX:8523327-8523447 1.58e-03 21_[+4(3.47e-05)]_40_[+3(1.62e-05)]_\ 43 chr3R:27655672-27655792 4.52e-01 120 chr3R:6151887-6152007 1.89e-01 120 chrX:8092974-8093094 6.36e-01 120 chr3R:29830289-29830409 4.87e-03 20_[+5(4.37e-05)]_92 chr3R:21941135-21941255 1.75e-04 2_[+2(2.65e-05)]_54_[+1(1.64e-05)]_\ 48 chr3L:16060180-16060300 1.87e-03 [+3(1.62e-05)]_93_[+5(1.52e-05)]_11 chr3R:28691440-28691560 7.46e-01 120 chr2R:14317561-14317681 2.02e-01 120 chr3R:26250351-26250471 4.90e-01 120 chr3L:7993021-7993141 8.86e-01 120 chr3R:19085773-19085893 1.14e-01 120 chr3R:14462562-14462682 4.90e-01 120 chr3R:14474204-14474324 9.10e-02 120 chr3R:8788463-8788583 1.89e-01 120 chr2R:6105507-6105627 9.22e-01 120 chr3L:14534335-14534455 1.79e-01 120 chr2R:7204451-7204571 1.73e-01 120 chr2L:14685144-14685264 8.01e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************