******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ebx.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:19483139-19483259 1.0000 120 chr3L:18460435-18460555 1.0000 120 chrX:5063826-5063946 1.0000 120 chr2R:19632974-19633094 1.0000 120 chr2R:8992385-8992505 1.0000 120 chr2R:17616546-17616666 1.0000 120 chrX:3343856-3343976 1.0000 120 chr2R:7300803-7300923 1.0000 120 chr3L:8395101-8395221 1.0000 120 chr2L:13842242-13842362 1.0000 120 chr2L:15118160-15118280 1.0000 120 chr3R:31264083-31264203 1.0000 120 chr3L:2409429-2409549 1.0000 120 chr3R:15438151-15438271 1.0000 120 chr3R:15493369-15493489 1.0000 120 chr2R:12403718-12403838 1.0000 120 chrX:15292933-15293053 1.0000 120 chr2R:5260640-5260760 1.0000 120 chr2R:7727189-7727309 1.0000 120 chr3L:16930618-16930738 1.0000 120 chr2L:4661052-4661172 1.0000 120 chr2R:2565395-2565515 1.0000 120 chr3L:15014473-15014593 1.0000 120 chr2L:9540100-9540220 1.0000 120 chr2R:23002010-23002130 1.0000 120 chr2L:4019899-4020019 1.0000 120 chr3R:7981524-7981644 1.0000 120 chr3L:5356709-5356829 1.0000 120 chr3R:17805191-17805311 1.0000 120 chr2R:12571962-12572082 1.0000 120 chr2R:13043326-13043446 1.0000 120 chr3R:22397442-22397562 1.0000 120 chr2R:6169498-6169618 1.0000 120 chr2L:2745012-2745132 1.0000 120 chr2R:8665398-8665518 1.0000 120 chr2R:12521322-12521442 1.0000 120 chr3L:16875641-16875761 1.0000 120 chr2R:15485609-15485729 1.0000 120 chr2R:15698144-15698264 1.0000 120 chr2R:8627814-8627934 1.0000 120 chr3L:16470177-16470297 1.0000 120 chr3L:3472263-3472383 1.0000 120 chr2R:18446484-18446604 1.0000 120 chr3L:14235989-14236109 1.0000 120 chr3R:10437143-10437263 1.0000 120 chr3L:4322216-4322336 1.0000 120 chr3R:28345420-28345540 1.0000 120 chr2L:3131806-3131926 1.0000 120 chr2R:13403786-13403906 1.0000 120 chr2R:17748041-17748161 1.0000 120 chr2L:6566165-6566285 1.0000 120 chr2R:13220207-13220327 1.0000 120 chr3R:12222227-12222347 1.0000 120 chr3R:5733275-5733395 1.0000 120 chr2L:22579050-22579170 1.0000 120 chr3R:13674833-13674953 1.0000 120 chr2L:18682020-18682140 1.0000 120 chrX:22824802-22824922 1.0000 120 chr2L:17368625-17368745 1.0000 120 chr3R:17449525-17449645 1.0000 120 chrX:13134942-13135062 1.0000 120 chr2R:7940553-7940673 1.0000 120 chr2L:19393865-19393985 1.0000 120 chr3L:2885702-2885822 1.0000 120 chr2L:20294073-20294193 1.0000 120 chr2L:6127618-6127738 1.0000 120 chr3L:2893950-2894070 1.0000 120 chr2L:7409719-7409839 1.0000 120 chr3R:20908803-20908923 1.0000 120 chr2R:20230909-20231029 1.0000 120 chr3L:14621588-14621708 1.0000 120 chr2L:7856520-7856640 1.0000 120 chr2R:5416561-5416681 1.0000 120 chr3L:15809955-15810075 1.0000 120 chr3R:21386263-21386383 1.0000 120 chr3L:21941815-21941935 1.0000 120 chr2L:7452245-7452365 1.0000 120 chr2L:19915319-19915439 1.0000 120 chr3R:6706455-6706575 1.0000 120 chr2R:7317687-7317807 1.0000 120 chr3L:2485904-2486024 1.0000 120 chr3L:20541698-20541818 1.0000 120 chr3L:23150462-23150582 1.0000 120 chr3R:10076806-10076926 1.0000 120 chr2R:24857337-24857457 1.0000 120 chr2L:20851715-20851835 1.0000 120 chr3R:29904097-29904217 1.0000 120 chr2L:576948-577068 1.0000 120 chr3R:16351195-16351315 1.0000 120 chr2L:9120607-9120727 1.0000 120 chrX:9247263-9247383 1.0000 120 chr2R:9965037-9965157 1.0000 120 chr2R:1527047-1527167 1.0000 120 chr3L:12066803-12066923 1.0000 120 chr2R:14993796-14993916 1.0000 120 chr3L:13301966-13302086 1.0000 120 chr3L:7143436-7143556 1.0000 120 chr3L:20097411-20097531 1.0000 120 chr2R:12138667-12138787 1.0000 120 chr2L:16507756-16507876 1.0000 120 chr3L:25108862-25108982 1.0000 120 chrX:3861242-3861362 1.0000 120 chr3R:6149767-6149887 1.0000 120 chr2R:12201114-12201234 1.0000 120 chr3R:4705294-4705414 1.0000 120 chr3R:16374214-16374334 1.0000 120 chrX:9149100-9149220 1.0000 120 chr3R:20154792-20154912 1.0000 120 chr2R:25075907-25076027 1.0000 120 chr3L:28012643-28012763 1.0000 120 chr3R:15268561-15268681 1.0000 120 chr3L:11224799-11224919 1.0000 120 chr3L:16863086-16863206 1.0000 120 chr3L:11511392-11511512 1.0000 120 chr4:610557-610677 1.0000 120 chr2L:5365832-5365952 1.0000 120 chr3R:11452204-11452324 1.0000 120 chr2R:4547362-4547482 1.0000 120 chr2R:5350617-5350737 1.0000 120 chr2R:16867708-16867828 1.0000 120 chr3R:14823075-14823195 1.0000 120 chr2R:7186802-7186922 1.0000 120 chrX:11872759-11872879 1.0000 120 chr2R:22993174-22993294 1.0000 120 chr3R:8723102-8723222 1.0000 120 chrX:18321497-18321617 1.0000 120 chr3R:12679021-12679141 1.0000 120 chrX:2524592-2524712 1.0000 120 chr3L:3042289-3042409 1.0000 120 chr3R:27165525-27165645 1.0000 120 chr3L:4219456-4219576 1.0000 120 chrX:9041018-9041138 1.0000 120 chr3R:23522459-23522579 1.0000 120 chr3R:17733484-17733604 1.0000 120 chr3L:8329164-8329284 1.0000 120 chr2L:18776689-18776809 1.0000 120 chr3R:11665637-11665757 1.0000 120 chr3R:13958702-13958822 1.0000 120 chr3L:9487761-9487881 1.0000 120 chr3L:16335033-16335153 1.0000 120 chr3L:22894945-22895065 1.0000 120 chr3L:20104092-20104212 1.0000 120 chr2R:4824301-4824421 1.0000 120 chrX:19326882-19327002 1.0000 120 chr3L:16587084-16587204 1.0000 120 chrX:2419668-2419788 1.0000 120 chr2R:19941729-19941849 1.0000 120 chrX:17737139-17737259 1.0000 120 chr3L:21823379-21823499 1.0000 120 chr2L:18714237-18714357 1.0000 120 chr3R:16041039-16041159 1.0000 120 chr3R:6780183-6780303 1.0000 120 chr3L:23714906-23715026 1.0000 120 chrX:843659-843779 1.0000 120 chr3R:3789755-3789875 1.0000 120 chrX:11347959-11348079 1.0000 120 chr3L:7813577-7813697 1.0000 120 chr2L:21052330-21052450 1.0000 120 chr3R:18798859-18798979 1.0000 120 chr3L:21942017-21942137 1.0000 120 chr3L:16884217-16884337 1.0000 120 chr3R:3734818-3734938 1.0000 120 chr2L:18441379-18441499 1.0000 120 chr3R:24279462-24279582 1.0000 120 chr3R:4905934-4906054 1.0000 120 chr2R:23601855-23601975 1.0000 120 chr2R:21973028-21973148 1.0000 120 chr3R:5438888-5439008 1.0000 120 chr2R:21624417-21624537 1.0000 120 chr3R:27651849-27651969 1.0000 120 chr3L:27136379-27136499 1.0000 120 chr3L:2166916-2167036 1.0000 120 chr2L:15005627-15005747 1.0000 120 chr2R:16689555-16689675 1.0000 120 chr2L:5723966-5724086 1.0000 120 chr3L:7915093-7915213 1.0000 120 chr2R:23357361-23357481 1.0000 120 chr2L:9731383-9731503 1.0000 120 chr3L:212619-212739 1.0000 120 chr2R:9810770-9810890 1.0000 120 chrX:16695786-16695906 1.0000 120 chr3R:12413726-12413846 1.0000 120 chr3R:12429261-12429381 1.0000 120 chr2R:16673041-16673161 1.0000 120 chr2R:16872004-16872124 1.0000 120 chr3R:25678615-25678735 1.0000 120 chrX:16840049-16840169 1.0000 120 chr2L:4794553-4794673 1.0000 120 chrX:17720401-17720521 1.0000 120 chr2L:6677590-6677710 1.0000 120 chr2R:19283925-19284045 1.0000 120 chrX:4548768-4548888 1.0000 120 chrX:4104206-4104326 1.0000 120 chr2L:2979251-2979371 1.0000 120 chr3L:11523444-11523564 1.0000 120 chr2L:18612217-18612337 1.0000 120 chr3R:5754735-5754855 1.0000 120 chr2L:6945250-6945370 1.0000 120 chr3R:25335205-25335325 1.0000 120 chr3R:7508555-7508675 1.0000 120 chr3L:4277905-4278025 1.0000 120 chr2R:5144612-5144732 1.0000 120 chr2R:21292147-21292267 1.0000 120 chr2L:15771132-15771252 1.0000 120 chr3R:22094094-22094214 1.0000 120 chr2R:15145481-15145601 1.0000 120 chr3R:21889304-21889424 1.0000 120 chr3R:6870970-6871090 1.0000 120 chr3L:17339288-17339408 1.0000 120 chr3L:4554341-4554461 1.0000 120 chr3L:14607811-14607931 1.0000 120 chr2R:16142106-16142226 1.0000 120 chrX:17249468-17249588 1.0000 120 chr3L:18167252-18167372 1.0000 120 chr2L:22981719-22981839 1.0000 120 chr3R:12691509-12691629 1.0000 120 chr3L:12146400-12146520 1.0000 120 chr3L:1206791-1206911 1.0000 120 chr2L:14288004-14288124 1.0000 120 chr3L:7811778-7811898 1.0000 120 chr3L:10882791-10882911 1.0000 120 chr3L:14212457-14212577 1.0000 120 chr4:958409-958529 1.0000 120 chr3L:8628062-8628182 1.0000 120 chr3R:26103577-26103697 1.0000 120 chr2L:23313598-23313718 1.0000 120 chrX:6261022-6261142 1.0000 120 chr3L:9211443-9211563 1.0000 120 chr3R:18252726-18252846 1.0000 120 chr3L:8159139-8159259 1.0000 120 chr4:788495-788615 1.0000 120 chr2R:6042572-6042692 1.0000 120 chr3L:20436168-20436288 1.0000 120 chr3R:6819331-6819451 1.0000 120 chr2L:3452381-3452501 1.0000 120 chr3R:3750263-3750383 1.0000 120 chr2R:20287049-20287169 1.0000 120 chr2L:1909853-1909973 1.0000 120 chr3R:24851523-24851643 1.0000 120 chr2R:12184246-12184366 1.0000 120 chr3L:10886040-10886160 1.0000 120 chr3L:2782141-2782261 1.0000 120 chr3L:8787373-8787493 1.0000 120 chr3L:27858280-27858400 1.0000 120 chr3L:8191199-8191319 1.0000 120 chr2R:23614869-23614989 1.0000 120 chr2L:4818201-4818321 1.0000 120 chrX:9103732-9103852 1.0000 120 chr2R:4546602-4546722 1.0000 120 chr3R:20027995-20028115 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Ebx/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ebx.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.196 G 0.198 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.196 G 0.198 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCA MEME-1 width = 8 sites = 32 llr = 319 E-value = 6.6e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:1:::9 pos.-specific C :::9:991 probability G :9a:a1:: matrix T 8:::::1: bits 2.3 * * 2.1 * ** 1.9 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ******* (14.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17720401-17720521 87 5.37e-06 CGCCAACAGG TGGCGCCA CTTAGTGATA chr2L:15005627-15005747 29 5.37e-06 AATTCAAATT TGGCGCCA AGCTAATGTG chr2L:18441379-18441499 39 5.37e-06 CATGACACTG TGGCGCCA TTGCGGAGAA chr3R:11665637-11665757 40 5.37e-06 TCGTAGGTAG TGGCGCCA ATGTGCAATT chr2L:18776689-18776809 24 5.37e-06 AAATATCTGC TGGCGCCA TCTGTTGGCC chr3R:17733484-17733604 52 5.37e-06 TGGCTTCTAG TGGCGCCA TCTAGGTGTG chr3L:20097411-20097531 29 5.37e-06 ATTCATTTGA TGGCGCCA TCTAGCAGAT chr3L:12066803-12066923 22 5.37e-06 ATATCGTATG TGGCGCCA TTAAAGTGTG chr2L:20294073-20294193 8 5.37e-06 TATTTTG TGGCGCCA CACAATCCAG chr3R:10437143-10437263 59 5.37e-06 AGATCACTTG TGGCGCCA CCTCTGTGTC chr3R:17805191-17805311 96 5.37e-06 TGCCAAGCGG TGGCGCCA AAATTTGAAA chr3R:7981524-7981644 111 5.37e-06 GATCTCAAGG TGGCGCCA CC chr2L:4661052-4661172 34 5.37e-06 CAAGTATGTG TGGCGCCA TCTATGTTTT chr3L:10882791-10882911 7 8.85e-06 TAATGT TGGCGCCC AAAAAGTGTG chr2R:12201114-12201234 101 8.85e-06 TTCCGAAAGA TGGCGCCC TTGTGCAAAT chr2L:9540100-9540220 32 8.85e-06 TTTGGCACAG TGGCGCCC CTACAAGATG chr3L:11523444-11523564 31 1.42e-05 GCATACCGGT AGGCGCCA TTCTGCAGTT chr2R:23002010-23002130 90 1.42e-05 TGCGCTGCTG AGGCGCCA CTGTAAAATT chr2R:19632974-19633094 24 1.42e-05 ATTTCCACTA AGGCGCCA CCTGTTGCTA chr3L:10886040-10886160 103 3.62e-05 AAGCGCCCTC TGGCGCTA CTTAGCAAGA chr2R:9810770-9810890 51 3.62e-05 CACATGTAGG TGGCGCTA TTTGCGCTTG chr2L:5365832-5365952 14 3.62e-05 GCATACTTTT TGGCGGCA CTGGCATATA chr2R:7940553-7940673 28 3.62e-05 AGTCGCTAGG TGGAGCCA CTTATATACT chr2R:18446484-18446604 16 3.62e-05 GTCATATAGA TGGCGCTA CATTTGCCAT chr3R:15493369-15493489 44 3.62e-05 CGTGGCACAG TGGCGGCA CCTAACGTTC chr2R:8992385-8992505 108 3.62e-05 CTGAAATAGG TGGAGCCA AAGAT chr3L:19483139-19483259 93 3.62e-05 GTGCTGATTG TGGAGCCA TACAAAAAGC chr2R:24857337-24857457 87 4.31e-05 CGCACCATAT GGGCGCCA ACTTCAAATT chr2L:7856520-7856640 57 4.31e-05 AGGCTAGCTG CGGCGCCA TCTGGCGGGC chr2L:18682020-18682140 3 5.13e-05 CT TAGCGCCA AAATTGCCAA chr3R:12222227-12222347 20 5.13e-05 AGCTTTTTGC TAGCGCCA TCTAGGTTAA chr2R:12521322-12521442 34 5.67e-05 TATTTGAAAA TGGCGCCT TTTCCGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17720401-17720521 5.4e-06 86_[+1]_26 chr2L:15005627-15005747 5.4e-06 28_[+1]_84 chr2L:18441379-18441499 5.4e-06 38_[+1]_74 chr3R:11665637-11665757 5.4e-06 39_[+1]_73 chr2L:18776689-18776809 5.4e-06 23_[+1]_89 chr3R:17733484-17733604 5.4e-06 51_[+1]_61 chr3L:20097411-20097531 5.4e-06 28_[+1]_84 chr3L:12066803-12066923 5.4e-06 21_[+1]_91 chr2L:20294073-20294193 5.4e-06 7_[+1]_105 chr3R:10437143-10437263 5.4e-06 58_[+1]_54 chr3R:17805191-17805311 5.4e-06 95_[+1]_17 chr3R:7981524-7981644 5.4e-06 110_[+1]_2 chr2L:4661052-4661172 5.4e-06 33_[+1]_79 chr3L:10882791-10882911 8.8e-06 6_[+1]_106 chr2R:12201114-12201234 8.8e-06 100_[+1]_12 chr2L:9540100-9540220 8.8e-06 31_[+1]_81 chr3L:11523444-11523564 1.4e-05 30_[+1]_82 chr2R:23002010-23002130 1.4e-05 89_[+1]_23 chr2R:19632974-19633094 1.4e-05 23_[+1]_89 chr3L:10886040-10886160 3.6e-05 102_[+1]_10 chr2R:9810770-9810890 3.6e-05 50_[+1]_62 chr2L:5365832-5365952 3.6e-05 13_[+1]_99 chr2R:7940553-7940673 3.6e-05 27_[+1]_85 chr2R:18446484-18446604 3.6e-05 15_[+1]_97 chr3R:15493369-15493489 3.6e-05 43_[+1]_69 chr2R:8992385-8992505 3.6e-05 107_[+1]_5 chr3L:19483139-19483259 3.6e-05 92_[+1]_20 chr2R:24857337-24857457 4.3e-05 86_[+1]_26 chr2L:7856520-7856640 4.3e-05 56_[+1]_56 chr2L:18682020-18682140 5.1e-05 2_[+1]_110 chr3R:12222227-12222347 5.1e-05 19_[+1]_93 chr2R:12521322-12521442 5.7e-05 33_[+1]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCA width=8 seqs=32 chrX:17720401-17720521 ( 87) TGGCGCCA 1 chr2L:15005627-15005747 ( 29) TGGCGCCA 1 chr2L:18441379-18441499 ( 39) TGGCGCCA 1 chr3R:11665637-11665757 ( 40) TGGCGCCA 1 chr2L:18776689-18776809 ( 24) TGGCGCCA 1 chr3R:17733484-17733604 ( 52) TGGCGCCA 1 chr3L:20097411-20097531 ( 29) TGGCGCCA 1 chr3L:12066803-12066923 ( 22) TGGCGCCA 1 chr2L:20294073-20294193 ( 8) TGGCGCCA 1 chr3R:10437143-10437263 ( 59) TGGCGCCA 1 chr3R:17805191-17805311 ( 96) TGGCGCCA 1 chr3R:7981524-7981644 ( 111) TGGCGCCA 1 chr2L:4661052-4661172 ( 34) TGGCGCCA 1 chr3L:10882791-10882911 ( 7) TGGCGCCC 1 chr2R:12201114-12201234 ( 101) TGGCGCCC 1 chr2L:9540100-9540220 ( 32) TGGCGCCC 1 chr3L:11523444-11523564 ( 31) AGGCGCCA 1 chr2R:23002010-23002130 ( 90) AGGCGCCA 1 chr2R:19632974-19633094 ( 24) AGGCGCCA 1 chr3L:10886040-10886160 ( 103) TGGCGCTA 1 chr2R:9810770-9810890 ( 51) TGGCGCTA 1 chr2L:5365832-5365952 ( 14) TGGCGGCA 1 chr2R:7940553-7940673 ( 28) TGGAGCCA 1 chr2R:18446484-18446604 ( 16) TGGCGCTA 1 chr3R:15493369-15493489 ( 44) TGGCGGCA 1 chr2R:8992385-8992505 ( 108) TGGAGCCA 1 chr3L:19483139-19483259 ( 93) TGGAGCCA 1 chr2R:24857337-24857457 ( 87) GGGCGCCA 1 chr2L:7856520-7856640 ( 57) CGGCGCCA 1 chr2L:18682020-18682140 ( 3) TAGCGCCA 1 chr3R:12222227-12222347 ( 20) TAGCGCCA 1 chr2R:12521322-12521442 ( 34) TGGCGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5219 E= 6.6e-018 -169 -265 -266 147 -227 -1164 224 -1164 -1164 -1164 234 -1164 -169 221 -1164 -1164 -1164 -1164 234 -1164 -1164 225 -166 -1164 -1164 221 -1164 -169 154 -107 -1164 -328 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 6.6e-018 0.093750 0.031250 0.031250 0.843750 0.062500 0.000000 0.937500 0.000000 0.000000 0.000000 1.000000 0.000000 0.093750 0.906250 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.906250 0.000000 0.093750 0.875000 0.093750 0.000000 0.031250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 regular expression -------------------------------------------------------------------------------- TGGCGCCA -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGTATGC MEME-2 width = 8 sites = 32 llr = 316 E-value = 5.4e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa::9::: pos.-specific C ::11:::a probability G ::9:11a: matrix T :::9:9:: bits 2.3 ** 2.1 * ** 1.9 * ** 1.6 *** ** Relative 1.4 ***** ** Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGTATGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14212457-14212577 63 1.96e-05 CGCAGCCGGC AAGTATGC CGCACATATT chr3R:24279462-24279582 46 1.96e-05 GGCAGCCCAA AAGTATGC CCCACATCAG chrX:17737139-17737259 71 1.96e-05 ACGAGCCAAA AAGTATGC ACTATTTCAT chr2R:19941729-19941849 75 1.96e-05 CGCCGCCCGA AAGTATGC TTTGAGATTT chr3L:4219456-4219576 6 1.96e-05 CCTAA AAGTATGC ACCACAATTG chr3R:11452204-11452324 65 1.96e-05 ATCAGCCGAA AAGTATGC CAAATTGAAC chr3R:20154792-20154912 23 1.96e-05 GAGTGCCTGA AAGTATGC AAGCCATTTG chr3R:6149767-6149887 6 1.96e-05 CCAAA AAGTATGC AACGCAATCA chr3L:7143436-7143556 43 1.96e-05 TTCAGACGAA AAGTATGC AGCATTGAAA chr2L:9120607-9120727 79 1.96e-05 GGCCACTTAA AAGTATGC TATGAAAATT chr2R:7317687-7317807 36 1.96e-05 CAATGCCTAA AAGTATGC AATGAAAAGA chr2R:20230909-20231029 76 1.96e-05 GTTATCCTAA AAGTATGC AACGCAAAGA chr2L:22579050-22579170 76 1.96e-05 GAAATATTTT AAGTATGC ACACAAATTT chr2R:13403786-13403906 32 1.96e-05 TGCAGCTGCC AAGTATGC AACAGTTTTC chr3R:10437143-10437263 27 1.96e-05 TAAAGCCTGT AAGTATGC AATATTTTTG chr3L:14235989-14236109 53 1.96e-05 TGCCGCCTGA AAGTATGC TATGAATTGC chr2L:4019899-4020019 25 1.96e-05 ATGCGCTGAA AAGTATGC AAGCTTACCT chr2R:7727189-7727309 27 1.96e-05 TCCATCCCGA AAGTATGC AACGAAATTT chr3R:15438151-15438271 75 1.96e-05 TTCAGCCGAA AAGTATGC TAAGACTTGC chr3R:31264083-31264203 75 1.96e-05 TTCCACCTAA AAGTATGC TATACTTTGA chr2L:13842242-13842362 45 1.96e-05 CGCTACTAGA AAGTATGC AGTGGAATTT chrX:3343856-3343976 30 1.96e-05 CTCAGCCCAA AAGTATGC TGCAAAAGAT chr3L:18167252-18167372 61 3.23e-05 ACCTGCCTGA AAGTAGGC CTTGTAAAAT chrX:17720401-17720521 39 3.23e-05 TAATGCCTAT AAGTAGGC AGCACTTTTC chr3L:16470177-16470297 37 3.23e-05 ATAAGCCTAG AAGTAGGC AATATTCTTG chr3L:16875641-16875761 75 3.23e-05 TTGAGCCTAA AAGTAGGC AATTGTGCAA chr3R:18798859-18798979 70 5.77e-05 CTTCGCCCAA AAGTGTGC TATATTTGGT chr3R:13958702-13958822 35 5.77e-05 GTATTTTCAC AAGTGTGC CCAGCTAAAC chr3L:15809955-15810075 76 5.77e-05 ATCATCCAAA AAGCATGC CCCACAATAG chr3L:5356709-5356829 81 5.77e-05 GGAAAATTTA AAGCATGC TTTCAAGCTG chr2R:23601855-23601975 36 7.71e-05 CTATGCCAAA AACTATGC TACGCATTCT chr3L:3042289-3042409 47 7.71e-05 GGCAATGCTG AACTATGC ATTGGTGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14212457-14212577 2e-05 62_[+2]_50 chr3R:24279462-24279582 2e-05 45_[+2]_67 chrX:17737139-17737259 2e-05 70_[+2]_42 chr2R:19941729-19941849 2e-05 74_[+2]_38 chr3L:4219456-4219576 2e-05 5_[+2]_107 chr3R:11452204-11452324 2e-05 64_[+2]_48 chr3R:20154792-20154912 2e-05 22_[+2]_90 chr3R:6149767-6149887 2e-05 5_[+2]_107 chr3L:7143436-7143556 2e-05 42_[+2]_70 chr2L:9120607-9120727 2e-05 78_[+2]_34 chr2R:7317687-7317807 2e-05 35_[+2]_77 chr2R:20230909-20231029 2e-05 75_[+2]_37 chr2L:22579050-22579170 2e-05 75_[+2]_37 chr2R:13403786-13403906 2e-05 31_[+2]_81 chr3R:10437143-10437263 2e-05 26_[+2]_86 chr3L:14235989-14236109 2e-05 52_[+2]_60 chr2L:4019899-4020019 2e-05 24_[+2]_88 chr2R:7727189-7727309 2e-05 26_[+2]_86 chr3R:15438151-15438271 2e-05 74_[+2]_38 chr3R:31264083-31264203 2e-05 74_[+2]_38 chr2L:13842242-13842362 2e-05 44_[+2]_68 chrX:3343856-3343976 2e-05 29_[+2]_83 chr3L:18167252-18167372 3.2e-05 60_[+2]_52 chrX:17720401-17720521 3.2e-05 38_[+2]_74 chr3L:16470177-16470297 3.2e-05 36_[+2]_76 chr3L:16875641-16875761 3.2e-05 74_[+2]_38 chr3R:18798859-18798979 5.8e-05 69_[+2]_43 chr3R:13958702-13958822 5.8e-05 34_[+2]_78 chr3L:15809955-15810075 5.8e-05 75_[+2]_37 chr3L:5356709-5356829 5.8e-05 80_[+2]_32 chr2R:23601855-23601975 7.7e-05 35_[+2]_77 chr3L:3042289-3042409 7.7e-05 46_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGTATGC width=8 seqs=32 chr3L:14212457-14212577 ( 63) AAGTATGC 1 chr3R:24279462-24279582 ( 46) AAGTATGC 1 chrX:17737139-17737259 ( 71) AAGTATGC 1 chr2R:19941729-19941849 ( 75) AAGTATGC 1 chr3L:4219456-4219576 ( 6) AAGTATGC 1 chr3R:11452204-11452324 ( 65) AAGTATGC 1 chr3R:20154792-20154912 ( 23) AAGTATGC 1 chr3R:6149767-6149887 ( 6) AAGTATGC 1 chr3L:7143436-7143556 ( 43) AAGTATGC 1 chr2L:9120607-9120727 ( 79) AAGTATGC 1 chr2R:7317687-7317807 ( 36) AAGTATGC 1 chr2R:20230909-20231029 ( 76) AAGTATGC 1 chr2L:22579050-22579170 ( 76) AAGTATGC 1 chr2R:13403786-13403906 ( 32) AAGTATGC 1 chr3R:10437143-10437263 ( 27) AAGTATGC 1 chr3L:14235989-14236109 ( 53) AAGTATGC 1 chr2L:4019899-4020019 ( 25) AAGTATGC 1 chr2R:7727189-7727309 ( 27) AAGTATGC 1 chr3R:15438151-15438271 ( 75) AAGTATGC 1 chr3R:31264083-31264203 ( 75) AAGTATGC 1 chr2L:13842242-13842362 ( 45) AAGTATGC 1 chrX:3343856-3343976 ( 30) AAGTATGC 1 chr3L:18167252-18167372 ( 61) AAGTAGGC 1 chrX:17720401-17720521 ( 39) AAGTAGGC 1 chr3L:16470177-16470297 ( 37) AAGTAGGC 1 chr3L:16875641-16875761 ( 75) AAGTAGGC 1 chr3R:18798859-18798979 ( 70) AAGTGTGC 1 chr3R:13958702-13958822 ( 35) AAGTGTGC 1 chr3L:15809955-15810075 ( 76) AAGCATGC 1 chr3L:5356709-5356829 ( 81) AAGCATGC 1 chr2R:23601855-23601975 ( 36) AACTATGC 1 chr3L:3042289-3042409 ( 47) AACTATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.78433 E= 5.4e-016 173 -1164 -1164 -1164 173 -1164 -1164 -1164 -1164 -165 224 -1164 -1164 -165 -1164 163 164 -1164 -166 -1164 -1164 -1164 -66 153 -1164 -1164 234 -1164 -1164 235 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.4e-016 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.062500 0.000000 0.937500 0.937500 0.000000 0.062500 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 regular expression -------------------------------------------------------------------------------- AAGTATGC -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GCATACTT MEME-3 width = 8 sites = 25 llr = 247 E-value = 2.2e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::9:a::: pos.-specific C :a1::a:1 probability G a::::::: matrix T :::9::a9 bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 ** ** Relative 1.4 *** **** Entropy 1.2 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCATACTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8787373-8787493 83 1.95e-05 ATCTGCCGCT GCATACTT TTGAGAGTTA chr3L:1206791-1206911 74 1.95e-05 GAGACGCATT GCATACTT TCAGGCCGAA chr3R:7508555-7508675 28 1.95e-05 CAAAATCATT GCATACTT TGTGGCAGCC chr3L:11523444-11523564 69 1.95e-05 ACTTTTCGGT GCATACTT TCAGGCTGGC chr2R:16872004-16872124 83 1.95e-05 TCGCAGTGTA GCATACTT TTTGTTGTAA chr2R:22993174-22993294 75 1.95e-05 GGGTAGCGTT GCATACTT TTTGGCTGCG chr2L:5365832-5365952 4 1.95e-05 ATT GCATACTT TTTGGCGGCA chr3L:28012643-28012763 47 1.95e-05 AATACTGCTT GCATACTT TTCCCATACT chr3R:6149767-6149887 109 1.95e-05 ATTAGGCTTT GCATACTT TGCG chr2L:576948-577068 58 1.95e-05 TTTTTCCATA GCATACTT TTGAGTGAGG chr3L:2485904-2486024 90 1.95e-05 AAGAATTATT GCATACTT TCAGGGTGAC chr2R:7317687-7317807 84 1.95e-05 GAAAAGATGA GCATACTT CCTAGCATAT chr2R:13403786-13403906 86 1.95e-05 GCAAAGTGTT GCATACTT CTTGGCTGAA chr2L:3131806-3131926 96 1.95e-05 CATTTTTGTA GCATACTT TAATGCGCTG chr2L:4019899-4020019 88 1.95e-05 CAAAAGTGTA GCATACTT TCAAGGGCTA chr2R:12403718-12403838 66 1.95e-05 TGATTTTGAA GCATACTT TGGGGATAAA chr3L:8395101-8395221 88 1.95e-05 AATAAACATT GCATACTT TCAGTCAGCA chr3L:19483139-19483259 71 1.95e-05 CAGCACTAAT GCATACTT TTGGGTGCTG chr3R:16041039-16041159 84 4.47e-05 AAAAATCGTT GCCTACTT TCAAGCGCAG chr3R:11665637-11665757 100 4.47e-05 CAAATTTACT GCATACTC TCGGGCGTAA chr3R:16374214-16374334 77 4.47e-05 CATATTTGTG GCATACTC TTGGGCAAAA chr3L:16875641-16875761 29 4.47e-05 CTGGTTCATT GCCTACTT TCAGGCAGCA chr3R:15438151-15438271 91 7.00e-05 GCTAAGACTT GCATGCTT TTAGTTTATG chr2R:19632974-19633094 56 7.00e-05 AGAAGTCGTA GCACACTT TATGGCTGCG chrX:16695786-16695906 17 8.94e-05 TACTGAATAC GCAAACTT AGTCTCTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8787373-8787493 1.9e-05 82_[+3]_30 chr3L:1206791-1206911 1.9e-05 73_[+3]_39 chr3R:7508555-7508675 1.9e-05 27_[+3]_85 chr3L:11523444-11523564 1.9e-05 68_[+3]_44 chr2R:16872004-16872124 1.9e-05 82_[+3]_30 chr2R:22993174-22993294 1.9e-05 74_[+3]_38 chr2L:5365832-5365952 1.9e-05 3_[+3]_109 chr3L:28012643-28012763 1.9e-05 46_[+3]_66 chr3R:6149767-6149887 1.9e-05 108_[+3]_4 chr2L:576948-577068 1.9e-05 57_[+3]_55 chr3L:2485904-2486024 1.9e-05 89_[+3]_23 chr2R:7317687-7317807 1.9e-05 83_[+3]_29 chr2R:13403786-13403906 1.9e-05 85_[+3]_27 chr2L:3131806-3131926 1.9e-05 95_[+3]_17 chr2L:4019899-4020019 1.9e-05 87_[+3]_25 chr2R:12403718-12403838 1.9e-05 65_[+3]_47 chr3L:8395101-8395221 1.9e-05 87_[+3]_25 chr3L:19483139-19483259 1.9e-05 70_[+3]_42 chr3R:16041039-16041159 4.5e-05 83_[+3]_29 chr3R:11665637-11665757 4.5e-05 99_[+3]_13 chr3R:16374214-16374334 4.5e-05 76_[+3]_36 chr3L:16875641-16875761 4.5e-05 28_[+3]_84 chr3R:15438151-15438271 7e-05 90_[+3]_22 chr2R:19632974-19633094 7e-05 55_[+3]_57 chrX:16695786-16695906 8.9e-05 16_[+3]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATACTT width=8 seqs=25 chr3L:8787373-8787493 ( 83) GCATACTT 1 chr3L:1206791-1206911 ( 74) GCATACTT 1 chr3R:7508555-7508675 ( 28) GCATACTT 1 chr3L:11523444-11523564 ( 69) GCATACTT 1 chr2R:16872004-16872124 ( 83) GCATACTT 1 chr2R:22993174-22993294 ( 75) GCATACTT 1 chr2L:5365832-5365952 ( 4) GCATACTT 1 chr3L:28012643-28012763 ( 47) GCATACTT 1 chr3R:6149767-6149887 ( 109) GCATACTT 1 chr2L:576948-577068 ( 58) GCATACTT 1 chr3L:2485904-2486024 ( 90) GCATACTT 1 chr2R:7317687-7317807 ( 84) GCATACTT 1 chr2R:13403786-13403906 ( 86) GCATACTT 1 chr2L:3131806-3131926 ( 96) GCATACTT 1 chr2L:4019899-4020019 ( 88) GCATACTT 1 chr2R:12403718-12403838 ( 66) GCATACTT 1 chr3L:8395101-8395221 ( 88) GCATACTT 1 chr3L:19483139-19483259 ( 71) GCATACTT 1 chr3R:16041039-16041159 ( 84) GCCTACTT 1 chr3R:11665637-11665757 ( 100) GCATACTC 1 chr3R:16374214-16374334 ( 77) GCATACTC 1 chr3L:16875641-16875761 ( 29) GCCTACTT 1 chr3R:15438151-15438271 ( 91) GCATGCTT 1 chr2R:19632974-19633094 ( 56) GCACACTT 1 chrX:16695786-16695906 ( 17) GCAAACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 2.2e-007 -1129 -1129 234 -1129 -1129 235 -1129 -1129 161 -129 -1129 -1129 -291 -229 -1129 160 167 -1129 -231 -1129 -1129 235 -1129 -1129 -1129 -1129 -1129 172 -1129 -129 -1129 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.2e-007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.920000 0.080000 0.000000 0.000000 0.040000 0.040000 0.000000 0.920000 0.960000 0.000000 0.040000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.080000 0.000000 0.920000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-3 regular expression -------------------------------------------------------------------------------- GCATACTT -------------------------------------------------------------------------------- Time 19.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTKRCC MEME-4 width = 8 sites = 33 llr = 300 E-value = 6.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C :1:21:aa probability G a2a:55:: matrix T :7:84::: bits 2.3 * * ** 2.1 * * ** 1.9 * * ** 1.6 * * ** Relative 1.4 * * ** Entropy 1.2 * ** ** (13.1 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGGCC consensus CTA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9810770-9810890 86 5.46e-06 AGTAAATTCA GTGTGGCC AGATTACAGT chr3L:212619-212739 39 5.46e-06 GCGTATCGGA GTGTGGCC GAAGCTGACA chr2R:9965037-9965157 27 5.46e-06 GTGACGTGCG GTGTGGCC AGAGTTGCGA chr2R:12184246-12184366 32 1.38e-05 TTTTTGTGTA GTGTGACC ACAGCTGCGC chr2R:20287049-20287169 24 1.38e-05 CACATGCGCA GTGTGACC GTATGTCGTA chr2R:6042572-6042692 52 1.38e-05 GCCCCTCGAA GTGTGACC AGTCCGCGTA chr2R:19283925-19284045 28 1.38e-05 GCAGAATGCA GTGTGACC GTTGTTGTCA chr3R:12429261-12429381 16 1.38e-05 TAGGTAAACA GTGTGACC GAAGCTGGAC chr3L:7915093-7915213 22 1.38e-05 ATTGGACGCA GTGTGACC GGTTGGTGGC chr2L:7409719-7409839 76 1.38e-05 AACGGCTTTA GTGTGACC TCACCTAAGA chr2L:6127618-6127738 28 1.38e-05 CTCAAGCACA GTGTGACC GTGCGAGGAT chr2L:18682020-18682140 28 1.38e-05 CAATGCATCA GTGTGACC AAAGTGCGAT chr2R:17748041-17748161 64 1.38e-05 CCACTGGCTA GTGTGACC GTTGATCATT chr2L:9540100-9540220 78 1.38e-05 TACATAAATG GTGTGACC ATGATGTTTG chr2L:20294073-20294193 33 2.57e-05 CAGTCTTTTT GTGCGGCC ATTTCGTGTA chr2L:18612217-18612337 25 4.20e-05 TGTTGTTTGT GTGTTACC GTTTCGCACT chr2R:21624417-21624537 59 6.17e-05 ATTGCTTACC GTGCTGCC AGGCCGCAGA chr3L:16863086-16863206 23 6.17e-05 GAATTAAATG GTGCTGCC ACATCGGTTC chr2R:12138667-12138787 60 6.17e-05 AAAAAATGCA GTGCTGCC ACTACGATCG chr3R:29904097-29904217 9 6.17e-05 CATTTTGA GTGCTGCC ATCTATCGAG chr2L:20851715-20851835 76 6.17e-05 CTCTGTTTTG GGGTGACC ATGCCACCAT chr3L:2485904-2486024 101 6.17e-05 CATACTTTCA GGGTGACC ACGATCAAAC chr3R:28345420-28345540 44 6.17e-05 CAATCTCTTA GTGCTGCC CATACAAAAT chr3R:5754735-5754855 22 6.71e-05 CAGAGAGGCA GCGTGACC ATGACTGGGC chr3R:25678615-25678735 52 7.25e-05 AGCTGTGCTA GGGTTGCC ACCTATTTCA chr2L:9120607-9120727 20 7.25e-05 ATATTTGTGC GGGTTGCC TAAAAGTGCA chr2R:13220207-13220327 46 7.25e-05 CTGTTTCATA GGGTTGCC GGACGGGTAC chr2L:15771132-15771252 74 8.85e-05 TTCTAGCACC GCGTTGCC AACTTACTTG chrX:11347959-11348079 20 8.85e-05 GATCCGCACT GCGTTGCC GGATCATCCC chr2L:16507756-16507876 25 8.85e-05 TTTATGTGCG GCGTTGCC AGATCAGCTT chr2R:24857337-24857457 14 8.85e-05 GCTTGAGTGC GTGCTACC CGTTTCTAAC chr3R:4705294-4705414 34 9.61e-05 ATAAACTTAC GTGTCGCC GCTAGAAATT chr2R:12521322-12521442 79 9.61e-05 TTTCCGCTAG GTGTCGCC ACCTGATCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9810770-9810890 5.5e-06 85_[+4]_27 chr3L:212619-212739 5.5e-06 38_[+4]_74 chr2R:9965037-9965157 5.5e-06 26_[+4]_86 chr2R:12184246-12184366 1.4e-05 31_[+4]_81 chr2R:20287049-20287169 1.4e-05 23_[+4]_89 chr2R:6042572-6042692 1.4e-05 51_[+4]_61 chr2R:19283925-19284045 1.4e-05 27_[+4]_85 chr3R:12429261-12429381 1.4e-05 15_[+4]_97 chr3L:7915093-7915213 1.4e-05 21_[+4]_91 chr2L:7409719-7409839 1.4e-05 75_[+4]_37 chr2L:6127618-6127738 1.4e-05 27_[+4]_85 chr2L:18682020-18682140 1.4e-05 27_[+4]_85 chr2R:17748041-17748161 1.4e-05 63_[+4]_49 chr2L:9540100-9540220 1.4e-05 77_[+4]_35 chr2L:20294073-20294193 2.6e-05 32_[+4]_80 chr2L:18612217-18612337 4.2e-05 24_[+4]_88 chr2R:21624417-21624537 6.2e-05 58_[+4]_54 chr3L:16863086-16863206 6.2e-05 22_[+4]_90 chr2R:12138667-12138787 6.2e-05 59_[+4]_53 chr3R:29904097-29904217 6.2e-05 8_[+4]_104 chr2L:20851715-20851835 6.2e-05 75_[+4]_37 chr3L:2485904-2486024 6.2e-05 100_[+4]_12 chr3R:28345420-28345540 6.2e-05 43_[+4]_69 chr3R:5754735-5754855 6.7e-05 21_[+4]_91 chr3R:25678615-25678735 7.3e-05 51_[+4]_61 chr2L:9120607-9120727 7.3e-05 19_[+4]_93 chr2R:13220207-13220327 7.3e-05 45_[+4]_67 chr2L:15771132-15771252 8.8e-05 73_[+4]_39 chrX:11347959-11348079 8.8e-05 19_[+4]_93 chr2L:16507756-16507876 8.8e-05 24_[+4]_88 chr2R:24857337-24857457 8.8e-05 13_[+4]_99 chr3R:4705294-4705414 9.6e-05 33_[+4]_79 chr2R:12521322-12521442 9.6e-05 78_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTKRCC width=8 seqs=33 chr2R:9810770-9810890 ( 86) GTGTGGCC 1 chr3L:212619-212739 ( 39) GTGTGGCC 1 chr2R:9965037-9965157 ( 27) GTGTGGCC 1 chr2R:12184246-12184366 ( 32) GTGTGACC 1 chr2R:20287049-20287169 ( 24) GTGTGACC 1 chr2R:6042572-6042692 ( 52) GTGTGACC 1 chr2R:19283925-19284045 ( 28) GTGTGACC 1 chr3R:12429261-12429381 ( 16) GTGTGACC 1 chr3L:7915093-7915213 ( 22) GTGTGACC 1 chr2L:7409719-7409839 ( 76) GTGTGACC 1 chr2L:6127618-6127738 ( 28) GTGTGACC 1 chr2L:18682020-18682140 ( 28) GTGTGACC 1 chr2R:17748041-17748161 ( 64) GTGTGACC 1 chr2L:9540100-9540220 ( 78) GTGTGACC 1 chr2L:20294073-20294193 ( 33) GTGCGGCC 1 chr2L:18612217-18612337 ( 25) GTGTTACC 1 chr2R:21624417-21624537 ( 59) GTGCTGCC 1 chr3L:16863086-16863206 ( 23) GTGCTGCC 1 chr2R:12138667-12138787 ( 60) GTGCTGCC 1 chr3R:29904097-29904217 ( 9) GTGCTGCC 1 chr2L:20851715-20851835 ( 76) GGGTGACC 1 chr3L:2485904-2486024 ( 101) GGGTGACC 1 chr3R:28345420-28345540 ( 44) GTGCTGCC 1 chr3R:5754735-5754855 ( 22) GCGTGACC 1 chr3R:25678615-25678735 ( 52) GGGTTGCC 1 chr2L:9120607-9120727 ( 20) GGGTTGCC 1 chr2R:13220207-13220327 ( 46) GGGTTGCC 1 chr2L:15771132-15771252 ( 74) GCGTTGCC 1 chrX:11347959-11348079 ( 20) GCGTTGCC 1 chr2L:16507756-16507876 ( 25) GCGTTGCC 1 chr2R:24857337-24857457 ( 14) GTGCTACC 1 chr3R:4705294-4705414 ( 34) GTGTCGCC 1 chr2R:12521322-12521442 ( 79) GTGTCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 6.6e-005 -1169 -1169 234 -1169 -1169 -70 -39 126 -1169 -1169 234 -1169 -1169 11 -1169 137 -1169 -170 146 38 68 -1169 138 -1169 -1169 235 -1169 -1169 -1169 235 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 6.6e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.121212 0.151515 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.212121 0.000000 0.787879 0.000000 0.060606 0.545455 0.393939 0.484848 0.000000 0.515152 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-4 regular expression -------------------------------------------------------------------------------- GTG[TC][GT][GA]CC -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKCACAC MEME-5 width = 8 sites = 23 llr = 226 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a:a: pos.-specific C :1:a:a:a probability G a73::::: matrix T :26::::: bits 2.3 * * * 2.1 * * * * 1.9 * * * * 1.6 * *** * Relative 1.4 * ***** Entropy 1.2 * ***** (14.2 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4818201-4818321 94 8.18e-06 ATAAACTAAT GGTCACAC TTTTATTTGG chr3L:8191199-8191319 88 8.18e-06 AAGATACCTC GGTCACAC TGAGCGCTGC chr3R:24851523-24851643 76 8.18e-06 GTACCGAAAC GGTCACAC GCAACACTGC chr2L:3452381-3452501 85 8.18e-06 CCTGCCCTAC GGTCACAC CGAACACAAC chr3L:4277905-4278025 61 8.18e-06 CGCACCTTCT GGTCACAC CTGAGCATTG chr3R:25335205-25335325 83 8.18e-06 CATAAACATC GGTCACAC TCAAAAGGGC chr2L:6677590-6677710 63 8.18e-06 GGTCAACTTC GGTCACAC TATTTTTAAA chr3R:12413726-12413846 95 8.18e-06 TCCCAAGTCT GGTCACAC TGGAAGTGGC chr3L:3042289-3042409 95 8.18e-06 TGCGTATTAC GGTCACAC CAATGCCGGC chr2R:12138667-12138787 84 8.18e-06 ATCGAAATGC GGTCACAC TAGACAGCTG chr3R:21386263-21386383 98 8.18e-06 TATCTCATCT GGTCACAC TGAGCTGCCG chr2L:14288004-14288124 90 1.35e-05 CTCAAAGCCG GGGCACAC ACCAGCCAAG chr2R:23357361-23357481 58 1.35e-05 GTATAGAAAC GGGCACAC TAATGCGCAG chr3L:16335033-16335153 38 2.16e-05 AGCCTTTTGG GCTCACAC CATTTAAAGC chr4:788495-788615 94 3.95e-05 TGTCCGATCC GTTCACAC TGGTAACGTT chr3R:11452204-11452324 96 3.95e-05 AAACATTCCC GCGCACAC AAAATAGCCG chr2R:18446484-18446604 52 3.95e-05 ACAGCGCAAC GCGCACAC CTTATCAGCT chr3L:10882791-10882911 24 4.76e-05 CAAAAAGTGT GTGCACAC CATAAACTAG chrX:16695786-16695906 38 4.76e-05 CTCTCCAATT GTGCACAC TGACACAAGC chr3L:19483139-19483259 20 4.76e-05 CAGGTATTCC GTGCACAC ATTGTATCAT chr3L:21823379-21823499 83 5.29e-05 CGCAGCTAAC GGCCACAC TGCGCCCCAA chr2R:5416561-5416681 98 6.17e-05 ATGTATGTAC GGGCACCC AAACATATTT chr2R:16867708-16867828 31 7.43e-05 TCACTGCAAC GGTAACAC TGCGCATAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4818201-4818321 8.2e-06 93_[+5]_19 chr3L:8191199-8191319 8.2e-06 87_[+5]_25 chr3R:24851523-24851643 8.2e-06 75_[+5]_37 chr2L:3452381-3452501 8.2e-06 84_[+5]_28 chr3L:4277905-4278025 8.2e-06 60_[+5]_52 chr3R:25335205-25335325 8.2e-06 82_[+5]_30 chr2L:6677590-6677710 8.2e-06 62_[+5]_50 chr3R:12413726-12413846 8.2e-06 94_[+5]_18 chr3L:3042289-3042409 8.2e-06 94_[+5]_18 chr2R:12138667-12138787 8.2e-06 83_[+5]_29 chr3R:21386263-21386383 8.2e-06 97_[+5]_15 chr2L:14288004-14288124 1.4e-05 89_[+5]_23 chr2R:23357361-23357481 1.4e-05 57_[+5]_55 chr3L:16335033-16335153 2.2e-05 37_[+5]_75 chr4:788495-788615 3.9e-05 93_[+5]_19 chr3R:11452204-11452324 3.9e-05 95_[+5]_17 chr2R:18446484-18446604 3.9e-05 51_[+5]_61 chr3L:10882791-10882911 4.8e-05 23_[+5]_89 chrX:16695786-16695906 4.8e-05 37_[+5]_75 chr3L:19483139-19483259 4.8e-05 19_[+5]_93 chr3L:21823379-21823499 5.3e-05 82_[+5]_30 chr2R:5416561-5416681 6.2e-05 97_[+5]_15 chr2R:16867708-16867828 7.4e-05 30_[+5]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKCACAC width=8 seqs=23 chr2L:4818201-4818321 ( 94) GGTCACAC 1 chr3L:8191199-8191319 ( 88) GGTCACAC 1 chr3R:24851523-24851643 ( 76) GGTCACAC 1 chr2L:3452381-3452501 ( 85) GGTCACAC 1 chr3L:4277905-4278025 ( 61) GGTCACAC 1 chr3R:25335205-25335325 ( 83) GGTCACAC 1 chr2L:6677590-6677710 ( 63) GGTCACAC 1 chr3R:12413726-12413846 ( 95) GGTCACAC 1 chr3L:3042289-3042409 ( 95) GGTCACAC 1 chr2R:12138667-12138787 ( 84) GGTCACAC 1 chr3R:21386263-21386383 ( 98) GGTCACAC 1 chr2L:14288004-14288124 ( 90) GGGCACAC 1 chr2R:23357361-23357481 ( 58) GGGCACAC 1 chr3L:16335033-16335153 ( 38) GCTCACAC 1 chr4:788495-788615 ( 94) GTTCACAC 1 chr3R:11452204-11452324 ( 96) GCGCACAC 1 chr2R:18446484-18446604 ( 52) GCGCACAC 1 chr3L:10882791-10882911 ( 24) GTGCACAC 1 chrX:16695786-16695906 ( 38) GTGCACAC 1 chr3L:19483139-19483259 ( 20) GTGCACAC 1 chr3L:21823379-21823499 ( 83) GGCCACAC 1 chr2R:5416561-5416681 ( 98) GGGCACCC 1 chr2R:16867708-16867828 ( 31) GGTAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 2.5e-004 -1117 -1117 234 -1117 -1117 -59 181 -80 -1117 -217 81 100 -279 228 -1117 -1117 173 -1117 -1117 -1117 -1117 235 -1117 -1117 166 -217 -1117 -1117 -1117 235 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.130435 0.695652 0.173913 0.000000 0.043478 0.347826 0.608696 0.043478 0.956522 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCACAC MEME-5 regular expression -------------------------------------------------------------------------------- GG[TG]CACAC -------------------------------------------------------------------------------- Time 31.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19483139-19483259 5.20e-05 19_[+5(4.76e-05)]_43_[+3(1.95e-05)]_\ 14_[+1(3.62e-05)]_20 chr3L:18460435-18460555 1.02e-01 120 chrX:5063826-5063946 6.40e-01 120 chr2R:19632974-19633094 1.07e-04 23_[+1(1.42e-05)]_24_[+3(7.00e-05)]_\ 57 chr2R:8992385-8992505 1.83e-02 107_[+1(3.62e-05)]_5 chr2R:17616546-17616666 9.83e-01 120 chrX:3343856-3343976 5.61e-03 29_[+2(1.96e-05)]_83 chr2R:7300803-7300923 3.96e-01 120 chr3L:8395101-8395221 3.22e-03 87_[+3(1.95e-05)]_25 chr2L:13842242-13842362 9.71e-02 44_[+2(1.96e-05)]_68 chr2L:15118160-15118280 7.68e-01 120 chr3R:31264083-31264203 4.26e-02 74_[+2(1.96e-05)]_38 chr3L:2409429-2409549 5.63e-01 120 chr3R:15438151-15438271 2.04e-04 74_[+2(1.96e-05)]_8_[+3(7.00e-05)]_\ 22 chr3R:15493369-15493489 1.18e-01 43_[+1(3.62e-05)]_69 chr2R:12403718-12403838 8.76e-02 65_[+3(1.95e-05)]_47 chrX:15292933-15293053 8.48e-01 120 chr2R:5260640-5260760 9.94e-01 120 chr2R:7727189-7727309 7.65e-02 26_[+2(1.96e-05)]_86 chr3L:16930618-16930738 4.06e-01 120 chr2L:4661052-4661172 3.02e-04 1_[+2(9.37e-05)]_24_[+1(5.37e-06)]_\ 79 chr2R:2565395-2565515 3.65e-01 120 chr3L:15014473-15014593 1.04e-01 120 chr2L:9540100-9540220 7.27e-04 31_[+1(8.85e-06)]_38_[+4(1.38e-05)]_\ 35 chr2R:23002010-23002130 6.36e-02 89_[+1(1.42e-05)]_23 chr2L:4019899-4020019 1.68e-03 24_[+2(1.96e-05)]_55_[+3(1.95e-05)]_\ 25 chr3R:7981524-7981644 2.55e-05 110_[+1(5.37e-06)]_2 chr3L:5356709-5356829 5.13e-03 80_[+2(5.77e-05)]_32 chr3R:17805191-17805311 3.03e-02 95_[+1(5.37e-06)]_17 chr2R:12571962-12572082 3.62e-01 120 chr2R:13043326-13043446 9.84e-01 120 chr3R:22397442-22397562 4.37e-01 120 chr2R:6169498-6169618 2.90e-01 120 chr2L:2745012-2745132 1.78e-01 120 chr2R:8665398-8665518 9.53e-01 120 chr2R:12521322-12521442 1.38e-02 33_[+1(5.67e-05)]_37_[+4(9.61e-05)]_\ 34 chr3L:16875641-16875761 2.32e-03 28_[+3(4.47e-05)]_38_[+2(3.23e-05)]_\ 38 chr2R:15485609-15485729 4.74e-02 120 chr2R:15698144-15698264 3.07e-01 120 chr2R:8627814-8627934 3.97e-01 120 chr3L:16470177-16470297 2.98e-02 36_[+2(3.23e-05)]_76 chr3L:3472263-3472383 6.21e-01 120 chr2R:18446484-18446604 2.76e-04 15_[+1(3.62e-05)]_28_[+5(3.95e-05)]_\ 61 chr3L:14235989-14236109 9.41e-03 52_[+2(1.96e-05)]_60 chr3R:10437143-10437263 4.29e-05 26_[+2(1.96e-05)]_24_[+1(5.37e-06)]_\ 54 chr3L:4322216-4322336 2.69e-01 120 chr3R:28345420-28345540 1.49e-02 43_[+4(6.17e-05)]_69 chr2L:3131806-3131926 1.14e-02 18_[+3(1.95e-05)]_69_[+3(1.95e-05)]_\ 17 chr2R:13403786-13403906 3.71e-04 31_[+2(1.96e-05)]_46_[+3(1.95e-05)]_\ 27 chr2R:17748041-17748161 3.51e-03 63_[+4(1.38e-05)]_49 chr2L:6566165-6566285 4.13e-02 120 chr2R:13220207-13220327 2.64e-02 45_[+4(7.25e-05)]_67 chr3R:12222227-12222347 5.83e-02 19_[+1(5.13e-05)]_93 chr3R:5733275-5733395 2.24e-01 120 chr2L:22579050-22579170 1.01e-02 75_[+2(1.96e-05)]_37 chr3R:13674833-13674953 1.90e-01 120 chr2L:18682020-18682140 2.41e-03 2_[+1(5.13e-05)]_17_[+4(1.38e-05)]_\ 85 chrX:22824802-22824922 9.54e-02 120 chr2L:17368625-17368745 8.17e-01 120 chr3R:17449525-17449645 8.30e-01 120 chrX:13134942-13135062 1.96e-01 120 chr2R:7940553-7940673 6.63e-02 27_[+1(3.62e-05)]_85 chr2L:19393865-19393985 7.23e-01 120 chr3L:2885702-2885822 1.34e-01 120 chr2L:20294073-20294193 1.74e-04 7_[+1(5.37e-06)]_17_[+4(2.57e-05)]_\ 80 chr2L:6127618-6127738 1.27e-02 27_[+4(1.38e-05)]_85 chr3L:2893950-2894070 7.64e-01 120 chr2L:7409719-7409839 6.88e-02 48_[+4(8.85e-05)]_19_[+4(1.38e-05)]_\ 37 chr3R:20908803-20908923 8.44e-01 120 chr2R:20230909-20231029 9.97e-02 75_[+2(1.96e-05)]_37 chr3L:14621588-14621708 2.50e-01 120 chr2L:7856520-7856640 5.42e-02 56_[+1(4.31e-05)]_56 chr2R:5416561-5416681 1.24e-02 97_[+5(6.17e-05)]_15 chr3L:15809955-15810075 1.26e-01 75_[+2(5.77e-05)]_37 chr3R:21386263-21386383 2.18e-02 97_[+5(8.18e-06)]_15 chr3L:21941815-21941935 1.72e-01 120 chr2L:7452245-7452365 8.33e-01 120 chr2L:19915319-19915439 5.28e-01 120 chr3R:6706455-6706575 4.07e-01 120 chr2R:7317687-7317807 5.96e-04 35_[+2(1.96e-05)]_40_[+3(1.95e-05)]_\ 29 chr3L:2485904-2486024 3.43e-04 89_[+3(1.95e-05)]_3_[+4(6.17e-05)]_\ 12 chr3L:20541698-20541818 8.73e-02 120 chr3L:23150462-23150582 4.43e-01 120 chr3R:10076806-10076926 2.10e-01 120 chr2R:24857337-24857457 4.99e-04 13_[+4(8.85e-05)]_65_[+1(4.31e-05)]_\ 26 chr2L:20851715-20851835 9.68e-02 75_[+4(6.17e-05)]_37 chr3R:29904097-29904217 1.95e-03 8_[+4(6.17e-05)]_104 chr2L:576948-577068 1.39e-01 57_[+3(1.95e-05)]_55 chr3R:16351195-16351315 3.38e-01 120 chr2L:9120607-9120727 5.01e-03 19_[+4(7.25e-05)]_51_[+2(1.96e-05)]_\ 34 chrX:9247263-9247383 4.96e-01 120 chr2R:9965037-9965157 2.80e-02 26_[+4(5.46e-06)]_86 chr2R:1527047-1527167 5.83e-01 120 chr3L:12066803-12066923 1.27e-03 21_[+1(5.37e-06)]_91 chr2R:14993796-14993916 1.66e-01 120 chr3L:13301966-13302086 2.87e-01 120 chr3L:7143436-7143556 1.19e-01 42_[+2(1.96e-05)]_70 chr3L:20097411-20097531 2.29e-02 28_[+1(5.37e-06)]_84 chr2R:12138667-12138787 2.06e-03 59_[+4(6.17e-05)]_16_[+5(8.18e-06)]_\ 29 chr2L:16507756-16507876 3.47e-02 24_[+4(8.85e-05)]_88 chr3L:25108862-25108982 7.63e-01 120 chrX:3861242-3861362 2.93e-01 120 chr3R:6149767-6149887 6.83e-04 5_[+2(1.96e-05)]_95_[+3(1.95e-05)]_\ 4 chr2R:12201114-12201234 2.50e-02 100_[+1(8.85e-06)]_12 chr3R:4705294-4705414 2.40e-01 33_[+4(9.61e-05)]_79 chr3R:16374214-16374334 8.13e-03 76_[+3(4.47e-05)]_36 chrX:9149100-9149220 6.32e-01 120 chr3R:20154792-20154912 5.44e-02 22_[+2(1.96e-05)]_90 chr2R:25075907-25076027 3.64e-01 120 chr3L:28012643-28012763 5.02e-02 46_[+3(1.95e-05)]_66 chr3R:15268561-15268681 2.75e-02 120 chr3L:11224799-11224919 6.10e-01 120 chr3L:16863086-16863206 3.44e-02 22_[+4(6.17e-05)]_90 chr3L:11511392-11511512 2.19e-01 120 chr4:610557-610677 1.00e+00 120 chr2L:5365832-5365952 4.33e-03 3_[+3(1.95e-05)]_2_[+1(3.62e-05)]_\ 99 chr3R:11452204-11452324 3.68e-04 64_[+2(1.96e-05)]_23_[+5(3.95e-05)]_\ 17 chr2R:4547362-4547482 9.25e-01 120 chr2R:5350617-5350737 1.21e-01 120 chr2R:16867708-16867828 2.15e-01 30_[+5(7.43e-05)]_82 chr3R:14823075-14823195 8.72e-02 120 chr2R:7186802-7186922 9.75e-01 120 chrX:11872759-11872879 1.90e-01 120 chr2R:22993174-22993294 2.11e-02 43_[+3(1.95e-05)]_23_[+3(1.95e-05)]_\ 38 chr3R:8723102-8723222 6.61e-01 120 chrX:18321497-18321617 3.50e-01 120 chr3R:12679021-12679141 9.87e-01 120 chrX:2524592-2524712 8.23e-01 120 chr3L:3042289-3042409 2.02e-03 46_[+2(7.71e-05)]_40_[+5(8.18e-06)]_\ 18 chr3R:27165525-27165645 3.23e-01 120 chr3L:4219456-4219576 1.27e-02 5_[+2(1.96e-05)]_107 chrX:9041018-9041138 6.12e-01 120 chr3R:23522459-23522579 7.70e-01 120 chr3R:17733484-17733604 3.12e-03 51_[+1(5.37e-06)]_61 chr3L:8329164-8329284 1.72e-01 120 chr2L:18776689-18776809 1.18e-04 23_[+1(5.37e-06)]_89 chr3R:11665637-11665757 5.53e-04 39_[+1(5.37e-06)]_52_[+3(4.47e-05)]_\ 13 chr3R:13958702-13958822 4.10e-03 34_[+2(5.77e-05)]_78 chr3L:9487761-9487881 7.45e-01 120 chr3L:16335033-16335153 2.75e-02 37_[+5(2.16e-05)]_75 chr3L:22894945-22895065 3.42e-01 120 chr3L:20104092-20104212 9.77e-01 120 chr2R:4824301-4824421 8.45e-01 120 chrX:19326882-19327002 6.66e-02 120 chr3L:16587084-16587204 5.85e-02 120 chrX:2419668-2419788 3.99e-01 120 chr2R:19941729-19941849 1.60e-03 74_[+2(1.96e-05)]_38 chrX:17737139-17737259 8.74e-02 70_[+2(1.96e-05)]_42 chr3L:21823379-21823499 9.58e-02 82_[+5(5.29e-05)]_30 chr2L:18714237-18714357 8.35e-01 120 chr3R:16041039-16041159 1.14e-01 83_[+3(4.47e-05)]_29 chr3R:6780183-6780303 6.55e-01 120 chr3L:23714906-23715026 9.89e-01 120 chrX:843659-843779 9.58e-01 120 chr3R:3789755-3789875 7.20e-01 120 chrX:11347959-11348079 1.95e-01 19_[+4(8.85e-05)]_93 chr3L:7813577-7813697 1.85e-01 120 chr2L:21052330-21052450 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chr4:958409-958529 5.71e-01 120 chr3L:8628062-8628182 9.10e-01 120 chr3R:26103577-26103697 1.75e-01 120 chr2L:23313598-23313718 5.68e-02 120 chrX:6261022-6261142 2.65e-01 120 chr3L:9211443-9211563 4.09e-01 120 chr3R:18252726-18252846 1.04e-01 120 chr3L:8159139-8159259 9.11e-01 120 chr4:788495-788615 9.79e-03 93_[+5(3.95e-05)]_19 chr2R:6042572-6042692 2.05e-02 51_[+4(1.38e-05)]_61 chr3L:20436168-20436288 1.17e-01 120 chr3R:6819331-6819451 5.59e-01 120 chr2L:3452381-3452501 7.24e-02 84_[+5(8.18e-06)]_28 chr3R:3750263-3750383 6.74e-01 120 chr2R:20287049-20287169 1.09e-02 23_[+4(1.38e-05)]_89 chr2L:1909853-1909973 9.39e-01 120 chr3R:24851523-24851643 1.09e-01 75_[+5(8.18e-06)]_37 chr2R:12184246-12184366 1.60e-02 31_[+4(1.38e-05)]_81 chr3L:10886040-10886160 2.47e-02 102_[+1(3.62e-05)]_10 chr3L:2782141-2782261 2.47e-02 120 chr3L:8787373-8787493 4.36e-03 29_[+3(4.47e-05)]_45_[+3(1.95e-05)]_\ 30 chr3L:27858280-27858400 8.59e-01 120 chr3L:8191199-8191319 3.71e-02 87_[+5(8.18e-06)]_25 chr2R:23614869-23614989 3.21e-01 120 chr2L:4818201-4818321 7.09e-03 93_[+5(8.18e-06)]_19 chrX:9103732-9103852 2.44e-01 120 chr2R:4546602-4546722 4.75e-01 120 chr3R:20027995-20028115 1.49e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************