******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ERR.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1727301-1727421 1.0000 120 chr3L:19292153-19292273 1.0000 120 chr2R:13171731-13171851 1.0000 120 chr3R:12718773-12718893 1.0000 120 chr2R:23940724-23940844 1.0000 120 chr3R:18226877-18226997 1.0000 120 chr2L:2132385-2132505 1.0000 120 chr3L:6262136-6262256 1.0000 120 chr2R:7532846-7532966 1.0000 120 chr3R:22367835-22367955 1.0000 120 chr2R:8913162-8913282 1.0000 120 chr3L:2748483-2748603 1.0000 120 chr2L:1143447-1143567 1.0000 120 chr2R:21201069-21201189 1.0000 120 chrX:19667858-19667978 1.0000 120 chrX:20965815-20965935 1.0000 120 chr2R:7792961-7793081 1.0000 120 chr3R:10356066-10356186 1.0000 120 chr3L:12829908-12830028 1.0000 120 chrX:9118804-9118924 1.0000 120 chrX:18857501-18857621 1.0000 120 chrX:12668894-12669014 1.0000 120 chr2R:10111079-10111199 1.0000 120 chrX:9596628-9596748 1.0000 120 chr3L:1202875-1202995 1.0000 120 chr2L:9694337-9694457 1.0000 120 chr3L:17929852-17929972 1.0000 120 chr2R:21312829-21312949 1.0000 120 chr2R:9428187-9428307 1.0000 120 chr2R:16139045-16139165 1.0000 120 chrX:756801-756921 1.0000 120 chrX:9103681-9103801 1.0000 120 chr3L:13866439-13866559 1.0000 120 chr2L:1987423-1987543 1.0000 120 chr3L:6262335-6262455 1.0000 120 chr3R:30134235-30134355 1.0000 120 chr3L:17946531-17946651 1.0000 120 chr2L:10395972-10396092 1.0000 120 chr2L:1143659-1143779 1.0000 120 chr3R:15146894-15147014 1.0000 120 chr2L:487118-487238 1.0000 120 chr2R:21312627-21312747 1.0000 120 chr2R:23355138-23355258 1.0000 120 chr2R:7791355-7791475 1.0000 120 chr3R:7058183-7058303 1.0000 120 chr3L:9358289-9358409 1.0000 120 chrX:13752778-13752898 1.0000 120 chr2R:20330774-20330894 1.0000 120 chr3R:21198900-21199020 1.0000 120 chr3R:18798871-18798991 1.0000 120 chrX:2362533-2362653 1.0000 120 chr3L:17595955-17596075 1.0000 120 chr2L:8196844-8196964 1.0000 120 chr2L:4456591-4456711 1.0000 120 chr2L:2755694-2755814 1.0000 120 chr3L:4409680-4409800 1.0000 120 chr3R:31717862-31717982 1.0000 120 chr2L:5945867-5945987 1.0000 120 chr3L:8523331-8523451 1.0000 120 chr3R:26259155-26259275 1.0000 120 chrX:7581543-7581663 1.0000 120 chr3R:9631722-9631842 1.0000 120 chr3R:22368333-22368453 1.0000 120 chr3R:9873436-9873556 1.0000 120 chr3L:19290582-19290702 1.0000 120 chr3L:9358496-9358616 1.0000 120 chr2L:20898183-20898303 1.0000 120 chr3L:17843074-17843194 1.0000 120 chr3L:4025143-4025263 1.0000 120 chr3L:16660040-16660160 1.0000 120 chrX:16073175-16073295 1.0000 120 chr2R:7791896-7792016 1.0000 120 chr3L:6261041-6261161 1.0000 120 chr3L:21636810-21636930 1.0000 120 chr3R:9759945-9760065 1.0000 120 chr2R:7791556-7791676 1.0000 120 chrX:16308951-16309071 1.0000 120 chr2R:9189654-9189774 1.0000 120 chrX:2707409-2707529 1.0000 120 chr3L:12815861-12815981 1.0000 120 chr3L:18998104-18998224 1.0000 120 chr3R:30134438-30134558 1.0000 120 chr2L:1986381-1986501 1.0000 120 chrX:5427414-5427534 1.0000 120 chr3L:17958382-17958502 1.0000 120 chr2R:11847056-11847176 1.0000 120 chr2L:1727513-1727633 1.0000 120 chr3L:17950261-17950381 1.0000 120 chr2R:18810338-18810458 1.0000 120 chrX:16526448-16526568 1.0000 120 chr3R:18572439-18572559 1.0000 120 chr3L:349886-350006 1.0000 120 chr2R:7988442-7988562 1.0000 120 chr2L:20431328-20431448 1.0000 120 chr2R:14903820-14903940 1.0000 120 chrX:946335-946455 1.0000 120 chr2R:21530174-21530294 1.0000 120 chr3L:10663444-10663564 1.0000 120 chr3R:18910589-18910709 1.0000 120 chr2R:7766512-7766632 1.0000 120 chr3R:10080896-10081016 1.0000 120 chr3L:21319884-21320004 1.0000 120 chr3R:7492327-7492447 1.0000 120 chr2L:21683301-21683421 1.0000 120 chr2R:10111284-10111404 1.0000 120 chr3L:19649719-19649839 1.0000 120 chr3L:16806492-16806612 1.0000 120 chr2L:2372206-2372326 1.0000 120 chr2R:21201270-21201390 1.0000 120 chr2L:4197596-4197716 1.0000 120 chr3R:15136906-15137026 1.0000 120 chr3R:9759738-9759858 1.0000 120 chr3R:8352974-8353094 1.0000 120 chrX:9580710-9580830 1.0000 120 chr3R:17705920-17706040 1.0000 120 chr2L:4882709-4882829 1.0000 120 chr3R:26261537-26261657 1.0000 120 chrX:7069042-7069162 1.0000 120 chrX:8377783-8377903 1.0000 120 chr3R:30449612-30449732 1.0000 120 chr2L:2197816-2197936 1.0000 120 chr3L:3903543-3903663 1.0000 120 chr3L:12834855-12834975 1.0000 120 chrX:3968098-3968218 1.0000 120 chr2L:7427538-7427658 1.0000 120 chr2L:10849996-10850116 1.0000 120 chr3R:17700065-17700185 1.0000 120 chrX:9599808-9599928 1.0000 120 chr3R:16996839-16996959 1.0000 120 chr2R:24402401-24402521 1.0000 120 chr2L:14341164-14341284 1.0000 120 chrX:3332573-3332693 1.0000 120 chr2L:4197808-4197928 1.0000 120 chr3R:21127778-21127898 1.0000 120 chr3R:29113480-29113600 1.0000 120 chr3L:11127706-11127826 1.0000 120 chr3L:14783066-14783186 1.0000 120 chr3R:21186781-21186901 1.0000 120 chr3R:4281278-4281398 1.0000 120 chr2R:17792756-17792876 1.0000 120 chrX:1282627-1282747 1.0000 120 chr3R:10888555-10888675 1.0000 120 chrX:15297779-15297899 1.0000 120 chr2R:15863095-15863215 1.0000 120 chr3R:5633603-5633723 1.0000 120 chr2R:22593535-22593655 1.0000 120 chrX:10847563-10847683 1.0000 120 chr3R:5257423-5257543 1.0000 120 chr3L:17995310-17995430 1.0000 120 chr2L:13140963-13141083 1.0000 120 chr3L:11113434-11113554 1.0000 120 chr3R:18928402-18928522 1.0000 120 chr3L:17843279-17843399 1.0000 120 chr2R:21715655-21715775 1.0000 120 chr3R:5346804-5346924 1.0000 120 chr3R:24047246-24047366 1.0000 120 chr2R:17585224-17585344 1.0000 120 chr3R:26859369-26859489 1.0000 120 chrX:13762011-13762131 1.0000 120 chr3R:22522861-22522981 1.0000 120 chr3L:11550495-11550615 1.0000 120 chr2R:21532241-21532361 1.0000 120 chr3L:8185301-8185421 1.0000 120 chrX:12012340-12012460 1.0000 120 chr2L:20885907-20886027 1.0000 120 chrX:13994841-13994961 1.0000 120 chr3L:3320150-3320270 1.0000 120 chr2R:10617660-10617780 1.0000 120 chr2R:17686702-17686822 1.0000 120 chrX:15986843-15986963 1.0000 120 chr3R:14058771-14058891 1.0000 120 chr4:660614-660734 1.0000 120 chr2R:7805455-7805575 1.0000 120 chr3R:5670445-5670565 1.0000 120 chr2L:19493674-19493794 1.0000 120 chr3L:300013-300133 1.0000 120 chr2R:9859784-9859904 1.0000 120 chr3L:6263144-6263264 1.0000 120 chr3R:24051635-24051755 1.0000 120 chr2R:12998553-12998673 1.0000 120 chrX:6986276-6986396 1.0000 120 chr3L:17945618-17945738 1.0000 120 chr2R:15999398-15999518 1.0000 120 chr2R:18777422-18777542 1.0000 120 chr3L:17004964-17005084 1.0000 120 chr3L:10862027-10862147 1.0000 120 chr3R:30013255-30013375 1.0000 120 chr2R:9548535-9548655 1.0000 120 chrX:2790279-2790399 1.0000 120 chr2L:1657181-1657301 1.0000 120 chr3R:10089600-10089720 1.0000 120 chr3L:21205023-21205143 1.0000 120 chr3L:682575-682695 1.0000 120 chrX:5524433-5524553 1.0000 120 chr3R:14739979-14740099 1.0000 120 chr3R:28891887-28892007 1.0000 120 chr2R:22179700-22179820 1.0000 120 chr3R:18244754-18244874 1.0000 120 chrX:18407496-18407616 1.0000 120 chr2L:5944847-5944967 1.0000 120 chr2R:12425503-12425623 1.0000 120 chr2R:7457579-7457699 1.0000 120 chr3L:12834147-12834267 1.0000 120 chr2R:15613740-15613860 1.0000 120 chr2L:2900532-2900652 1.0000 120 chr2L:18974081-18974201 1.0000 120 chrX:19506012-19506132 1.0000 120 chr2R:11665532-11665652 1.0000 120 chr2R:10618602-10618722 1.0000 120 chr2R:13958168-13958288 1.0000 120 chrX:3379484-3379604 1.0000 120 chr2R:8603032-8603152 1.0000 120 chr3L:13863527-13863647 1.0000 120 chrX:10786753-10786873 1.0000 120 chr3L:3930829-3930949 1.0000 120 chr3R:30765796-30765916 1.0000 120 chr3L:17563783-17563903 1.0000 120 chr3R:23941818-23941938 1.0000 120 chr3L:19939205-19939325 1.0000 120 chr2L:21250952-21251072 1.0000 120 chr3R:30022686-30022806 1.0000 120 chr3L:22134429-22134549 1.0000 120 chr2L:6667692-6667812 1.0000 120 chr2L:20822112-20822232 1.0000 120 chr3R:12280870-12280990 1.0000 120 chr3L:2894831-2894951 1.0000 120 chrX:13278663-13278783 1.0000 120 chr3R:8670306-8670426 1.0000 120 chr3R:11822387-11822507 1.0000 120 chr2R:7510146-7510266 1.0000 120 chr3R:5264062-5264182 1.0000 120 chr3L:21955101-21955221 1.0000 120 chr2L:2805037-2805157 1.0000 120 chr2L:14013642-14013762 1.0000 120 chr2R:21075789-21075909 1.0000 120 chr3L:14554017-14554137 1.0000 120 chr3L:15824648-15824768 1.0000 120 chr3R:6170865-6170985 1.0000 120 chr3L:7811696-7811816 1.0000 120 chr3L:883101-883221 1.0000 120 chr2L:14141331-14141451 1.0000 120 chr2L:7810559-7810679 1.0000 120 chr3L:3942337-3942457 1.0000 120 chr3L:18837955-18838075 1.0000 120 chr2L:5225644-5225764 1.0000 120 chr3R:9872355-9872475 1.0000 120 chr3R:21853704-21853824 1.0000 120 chr3L:5923869-5923989 1.0000 120 chr2R:21648322-21648442 1.0000 120 chrX:19608366-19608486 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ERR/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ERR.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.263 C 0.242 G 0.237 T 0.258 Background letter frequencies (from file dataset with add-one prior applied): A 0.263 C 0.242 G 0.237 T 0.258 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACCTTG MEME-1 width = 8 sites = 52 llr = 461 E-value = 8.2e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9:3::: pos.-specific C :11a7::2 probability G :9:::::8 matrix T a::::aa1 bits 2.1 * 1.9 * * ** 1.7 * * ** 1.5 ** * ** Relative 1.2 **** ** Entropy 1.0 ******** (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13958168-13958288 97 1.49e-05 ACCAACAAAA TGACCTTG TCGGGATTAA chr2L:18974081-18974201 40 1.49e-05 AGACCTTGCT TGACCTTG CCTTCTCCTC chr2R:7457579-7457699 25 1.49e-05 CGCCTGACAG TGACCTTG AGGCGCAGCA chr3R:21186781-21186901 84 1.49e-05 ACCCTTCGGC TGACCTTG AAAGTTTTCG chr2L:10849996-10850116 26 1.49e-05 TCGTTGACGA TGACCTTG ACAAGCAGAT chr3R:17705920-17706040 56 1.49e-05 agaacaacaa TGACCTTG GCATTGACCC chrX:9580710-9580830 10 1.49e-05 ATACGTCGG TGACCTTG ACGAAGTTTA chr3L:16806492-16806612 46 1.49e-05 AACCTTACTC TGACCTTG ATGCGGAGCG chr3R:18572439-18572559 45 1.49e-05 CCGGCCCCTG TGACCTTG ACCTAGACCC chr3L:17958382-17958502 38 1.49e-05 ACGCTACGCT TGACCTTG AGCTTTAGAA chr2R:9189654-9189774 14 1.49e-05 TCCTCATGGG TGACCTTG AAAGGAGACT chr3L:8523331-8523451 45 1.49e-05 ACTATCCCGA TGACCTTG AAGTGCCCCC chr3L:17595955-17596075 31 1.49e-05 AATATCCTTT TGACCTTG AGCGCACAAT chr2R:7791355-7791475 97 1.49e-05 TGACCTTTCG TGACCTTG GTTATGCTCA chr3L:17946531-17946651 66 1.49e-05 CTTGTCAGCA TGACCTTG GCAGCTGTCA chr2L:1987423-1987543 52 1.49e-05 GCAACTGCAA TGACCTTG GCAAATGACA chr3L:13866439-13866559 49 1.49e-05 GGATGCCGCC TGACCTTG ACAGCCAGAG chrX:20965815-20965935 32 1.49e-05 GTCCATAGTT TGACCTTG TCAGTCGATT chr3R:17700065-17700185 11 3.10e-05 CGACCTTTTC TGACATTG CCTCAGGAAT chr3R:18910589-18910709 52 3.10e-05 CCAGTGGGCA TGACATTG AAACGTGACG chr3L:17950261-17950381 35 3.10e-05 TGGTTGGCTT TGACATTG ACTTTGAAGA chrX:2707409-2707529 49 3.10e-05 GTCAACGCAT TGACATTG TTCCCCCGGT chr3L:17843074-17843194 41 3.10e-05 CTTCACTCTT TGACATTG AAATAAACGA chr3L:19290582-19290702 18 3.10e-05 TATATTTGTA TGACATTG CTACCGAAAG chr3R:26259155-26259275 57 3.10e-05 AATTTTCGCT TGACATTG AACAAGGTCA chr2R:23355138-23355258 59 3.10e-05 TTGATCTCTG TGACATTG AAGTTGCGAT chr3R:10356066-10356186 70 3.10e-05 AAGGACACCT TGACATTG AACTCCCTCT chr3R:21853704-21853824 32 4.62e-05 TTGGTGTGTG TGACCTTC ACGACGAGTT chr2R:18777422-18777542 87 4.62e-05 TTACTTTCAT TGACCTTC GGCGTATGTG chr3R:30134235-30134355 51 4.62e-05 AACCTTCTTT TGACCTTC GTAAGTCTTC chr3L:6262136-6262256 29 4.62e-05 GGCCTACGCA TGACCTTC TCTCAAAGTC chr3L:17843279-17843399 41 6.13e-05 AGCCACTCGG TCACCTTG GCGGAGGATA chr3L:4025143-4025263 23 6.13e-05 ACGCCTCTAA TCACCTTG GCGGTCAAAT chr2R:21312627-21312747 64 6.13e-05 ACTTCAAAGG TCACCTTG AGCTTAATAG chr2R:10111079-10111199 86 6.13e-05 GGCCTGAAGG TCACCTTG AAACGTCAAA chrX:9599808-9599928 69 7.50e-05 GTTTGAGTTT TGCCCTTG AGTTTGTCCT chr2L:2755694-2755814 86 7.50e-05 GGGTATTGGA TGCCCTTG ATCAAGGAGA chrX:2362533-2362653 51 7.50e-05 GCTGAGCGGC TGCCCTTG TCAAGGTCAT chr2L:1657181-1657301 23 9.15e-05 GCCGCTCGAA TGACATTC ACGCGCAATA chrX:7069042-7069162 4 9.15e-05 AGC TGACATTC AATCGCCCCC chr2R:11847056-11847176 37 9.15e-05 CGTGGGCCTT TGACATTC GACAAGGTCA chr3L:6263144-6263264 42 1.08e-04 TTAGTCAAGG TGACCTTT GCTGGTTTTC chr3L:11113434-11113554 70 1.08e-04 GCCGGCTATT TGACCTTT AGAACTTCTG chr2R:23940724-23940844 90 1.08e-04 GACTTTAGTT TGACCTTT GGTGCTTACG chr3R:24051635-24051755 8 1.40e-04 TCGGTGG TCACATTG TAGCCTCTTC chr3L:21636810-21636930 34 1.40e-04 TTGCCCGGTT TGACTTTG AGGGAGAAGC chr2R:7532846-7532966 104 1.40e-04 AGGATACGTT TGACTTTG AAGTCTCCT chr3L:12834147-12834267 2 1.55e-04 T TGTCCTTG TGCCCGCCAC chr2L:4456591-4456711 47 1.55e-04 TGTTCGGTCG TGTCCTTG ACCCAAGGTC chr3L:8185301-8185421 85 1.69e-04 GAATGAGTAG TGCCATTG GAGCCCACAG chrX:8377783-8377903 25 1.85e-04 GTCAATTTGT TCACCTTC AGTCGGCCAT chr3R:9759738-9759858 102 1.85e-04 TGTTTTCTTA TCACCTTC AGGTTGACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13958168-13958288 1.5e-05 96_[+1]_16 chr2L:18974081-18974201 1.5e-05 39_[+1]_73 chr2R:7457579-7457699 1.5e-05 24_[+1]_88 chr3R:21186781-21186901 1.5e-05 83_[+1]_29 chr2L:10849996-10850116 1.5e-05 25_[+1]_87 chr3R:17705920-17706040 1.5e-05 55_[+1]_57 chrX:9580710-9580830 1.5e-05 9_[+1]_103 chr3L:16806492-16806612 1.5e-05 45_[+1]_67 chr3R:18572439-18572559 1.5e-05 44_[+1]_68 chr3L:17958382-17958502 1.5e-05 37_[+1]_75 chr2R:9189654-9189774 1.5e-05 13_[+1]_99 chr3L:8523331-8523451 1.5e-05 44_[+1]_68 chr3L:17595955-17596075 1.5e-05 30_[+1]_82 chr2R:7791355-7791475 1.5e-05 96_[+1]_16 chr3L:17946531-17946651 1.5e-05 65_[+1]_47 chr2L:1987423-1987543 1.5e-05 51_[+1]_61 chr3L:13866439-13866559 1.5e-05 48_[+1]_64 chrX:20965815-20965935 1.5e-05 31_[+1]_81 chr3R:17700065-17700185 3.1e-05 10_[+1]_102 chr3R:18910589-18910709 3.1e-05 51_[+1]_61 chr3L:17950261-17950381 3.1e-05 34_[+1]_78 chrX:2707409-2707529 3.1e-05 48_[+1]_64 chr3L:17843074-17843194 3.1e-05 40_[+1]_72 chr3L:19290582-19290702 3.1e-05 17_[+1]_95 chr3R:26259155-26259275 3.1e-05 56_[+1]_56 chr2R:23355138-23355258 3.1e-05 58_[+1]_54 chr3R:10356066-10356186 3.1e-05 69_[+1]_43 chr3R:21853704-21853824 4.6e-05 31_[+1]_81 chr2R:18777422-18777542 4.6e-05 86_[+1]_26 chr3R:30134235-30134355 4.6e-05 50_[+1]_62 chr3L:6262136-6262256 4.6e-05 28_[+1]_84 chr3L:17843279-17843399 6.1e-05 40_[+1]_72 chr3L:4025143-4025263 6.1e-05 22_[+1]_90 chr2R:21312627-21312747 6.1e-05 63_[+1]_49 chr2R:10111079-10111199 6.1e-05 85_[+1]_27 chrX:9599808-9599928 7.5e-05 68_[+1]_44 chr2L:2755694-2755814 7.5e-05 85_[+1]_27 chrX:2362533-2362653 7.5e-05 50_[+1]_62 chr2L:1657181-1657301 9.2e-05 22_[+1]_90 chrX:7069042-7069162 9.2e-05 3_[+1]_109 chr2R:11847056-11847176 9.2e-05 36_[+1]_76 chr3L:6263144-6263264 0.00011 41_[+1]_71 chr3L:11113434-11113554 0.00011 69_[+1]_43 chr2R:23940724-23940844 0.00011 89_[+1]_23 chr3R:24051635-24051755 0.00014 7_[+1]_105 chr3L:21636810-21636930 0.00014 33_[+1]_79 chr2R:7532846-7532966 0.00014 103_[+1]_9 chr3L:12834147-12834267 0.00015 1_[+1]_111 chr2L:4456591-4456711 0.00015 46_[+1]_66 chr3L:8185301-8185421 0.00017 84_[+1]_28 chrX:8377783-8377903 0.00018 24_[+1]_88 chr3R:9759738-9759858 0.00018 101_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTTG width=8 seqs=52 chr2R:13958168-13958288 ( 97) TGACCTTG 1 chr2L:18974081-18974201 ( 40) TGACCTTG 1 chr2R:7457579-7457699 ( 25) TGACCTTG 1 chr3R:21186781-21186901 ( 84) TGACCTTG 1 chr2L:10849996-10850116 ( 26) TGACCTTG 1 chr3R:17705920-17706040 ( 56) TGACCTTG 1 chrX:9580710-9580830 ( 10) TGACCTTG 1 chr3L:16806492-16806612 ( 46) TGACCTTG 1 chr3R:18572439-18572559 ( 45) TGACCTTG 1 chr3L:17958382-17958502 ( 38) TGACCTTG 1 chr2R:9189654-9189774 ( 14) TGACCTTG 1 chr3L:8523331-8523451 ( 45) TGACCTTG 1 chr3L:17595955-17596075 ( 31) TGACCTTG 1 chr2R:7791355-7791475 ( 97) TGACCTTG 1 chr3L:17946531-17946651 ( 66) TGACCTTG 1 chr2L:1987423-1987543 ( 52) TGACCTTG 1 chr3L:13866439-13866559 ( 49) TGACCTTG 1 chrX:20965815-20965935 ( 32) TGACCTTG 1 chr3R:17700065-17700185 ( 11) TGACATTG 1 chr3R:18910589-18910709 ( 52) TGACATTG 1 chr3L:17950261-17950381 ( 35) TGACATTG 1 chrX:2707409-2707529 ( 49) TGACATTG 1 chr3L:17843074-17843194 ( 41) TGACATTG 1 chr3L:19290582-19290702 ( 18) TGACATTG 1 chr3R:26259155-26259275 ( 57) TGACATTG 1 chr2R:23355138-23355258 ( 59) TGACATTG 1 chr3R:10356066-10356186 ( 70) TGACATTG 1 chr3R:21853704-21853824 ( 32) TGACCTTC 1 chr2R:18777422-18777542 ( 87) TGACCTTC 1 chr3R:30134235-30134355 ( 51) TGACCTTC 1 chr3L:6262136-6262256 ( 29) TGACCTTC 1 chr3L:17843279-17843399 ( 41) TCACCTTG 1 chr3L:4025143-4025263 ( 23) TCACCTTG 1 chr2R:21312627-21312747 ( 64) TCACCTTG 1 chr2R:10111079-10111199 ( 86) TCACCTTG 1 chrX:9599808-9599928 ( 69) TGCCCTTG 1 chr2L:2755694-2755814 ( 86) TGCCCTTG 1 chrX:2362533-2362653 ( 51) TGCCCTTG 1 chr2L:1657181-1657301 ( 23) TGACATTC 1 chrX:7069042-7069162 ( 4) TGACATTC 1 chr2R:11847056-11847176 ( 37) TGACATTC 1 chr3L:6263144-6263264 ( 42) TGACCTTT 1 chr3L:11113434-11113554 ( 70) TGACCTTT 1 chr2R:23940724-23940844 ( 90) TGACCTTT 1 chr3R:24051635-24051755 ( 8) TCACATTG 1 chr3L:21636810-21636930 ( 34) TGACTTTG 1 chr2R:7532846-7532966 ( 104) TGACTTTG 1 chr3L:12834147-12834267 ( 2) TGTCCTTG 1 chr2L:4456591-4456711 ( 47) TGTCCTTG 1 chr3L:8185301-8185421 ( 85) TGCCATTG 1 chrX:8377783-8377903 ( 25) TCACCTTC 1 chr3R:9759738-9759858 ( 102) TCACCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2487 E= 8.2e-022 -1234 -1234 -1234 195 -1234 -85 187 -1234 175 -165 -1234 -274 -1234 205 -1234 -1234 3 152 -1234 -274 -1234 -1234 -1234 195 -1234 -1234 -1234 195 -1234 -48 170 -216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 8.2e-022 0.000000 0.000000 0.000000 1.000000 0.000000 0.134615 0.865385 0.000000 0.884615 0.076923 0.000000 0.038462 0.000000 1.000000 0.000000 0.000000 0.269231 0.692308 0.000000 0.038462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.173077 0.769231 0.057692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 regular expression -------------------------------------------------------------------------------- TGAC[CA]TTG -------------------------------------------------------------------------------- Time 7.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGGTCA MEME-2 width = 8 sites = 81 llr = 626 E-value = 2.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1aa1:1:8 pos.-specific C 6:::::8: probability G 3::7a122 matrix T :::2:8:: bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * * Relative 1.2 ** * ** Entropy 1.0 ** **** (11.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGGTCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21205023-21205143 66 1.54e-05 TCGACAAGTT CAAGGTCA TTACCAGGCA chr3R:30449612-30449732 12 1.54e-05 GCGGGTGGGT CAAGGTCA ACCCGTGAAT chr3R:10080896-10081016 37 1.54e-05 AGTTCACTGT CAAGGTCA CCTACTACAG chr2R:11847056-11847176 47 1.54e-05 TGACATTCGA CAAGGTCA CTGGCTCTAG chrX:5427414-5427534 39 1.54e-05 GTCATTTGGC CAAGGTCA CGCGTCGCGT chr3R:26259155-26259275 67 1.54e-05 TGACATTGAA CAAGGTCA AGCAACAAGC chr2L:4456591-4456711 86 1.54e-05 TCACCAACAG CAAGGTCA AAGATGGAAG chrX:2362533-2362653 60 1.54e-05 CTGCCCTTGT CAAGGTCA TGCCCAGTCA chr2R:20330774-20330894 105 1.54e-05 TAGAGCTTTT CAAGGTCA AATACATT chrX:13752778-13752898 64 1.54e-05 AGACGAAATT CAAGGTCA CGCAACAACA chr2L:1143659-1143779 78 1.54e-05 AATGTCCGGA CAAGGTCA AATGGAAGTC chrX:756801-756921 66 1.54e-05 AAGGGCAAAG CAAGGTCA CAGACAAGCT chr2L:9694337-9694457 83 1.54e-05 AAAGGTCGAA CAAGGTCA CGGCCAACGA chr2L:2132385-2132505 80 1.54e-05 CACATTTTTT CAAGGTCA ATCAAAGGTT chr3L:10862027-10862147 68 3.06e-05 AGTTCAGATT GAAGGTCA CACATGGCAC chr3R:10888555-10888675 14 3.06e-05 CAGAGGTGAT GAAGGTCA TAGTTTTCGC chrX:9596628-9596748 39 3.06e-05 AAGGTTAATG GAAGGTCA ATGCTATGAT chr2L:21250952-21251072 35 4.45e-05 TTGGTTTGTG CAAGGTCG TTTGCGTACA chrX:3379484-3379604 57 4.45e-05 TTGGTTTGCT CAAGGTCG CAAGAGCAGC chrX:2790279-2790399 57 4.45e-05 ACAGTCGCTC CAAGGTCG TCGAACAAAA chr2L:7427538-7427658 61 4.45e-05 GGTTTATGGC CAAGGTCG AATACACGCT chr3L:13866439-13866559 78 4.45e-05 GAATTCAAGG CAAGGTCG CAGGCTCACG chr3L:17929852-17929972 56 4.45e-05 GGCAGCAGCA CAAGGTCG AATGTCAGGA chr3L:19292153-19292273 54 4.45e-05 AAGGGCATTG CAAGGTCG CAGCAGTTGC chr2L:6667692-6667812 68 7.64e-05 GGGACAAGCC CAATGTCA ACCTGCCGCG chr3R:30022686-30022806 79 7.64e-05 ACGCGAACCA CAAGGTGA CCCCAAGTCG chrX:5524433-5524553 80 7.64e-05 CTTGAAGATT CAAGGTGA ACTCGAACCT chr2R:21532241-21532361 106 7.64e-05 TATGATGATC CAAGGTGA CCCATCC chr3R:5633603-5633723 40 7.64e-05 GTCGGGTCTT CAATGTCA CCAATCACTA chr3L:3903543-3903663 42 7.64e-05 AGCCGTACGG CAAGGTGA AGGTGCCCTC chrX:7069042-7069162 53 7.64e-05 TTCGTTGGGA CAATGTCA AGTTCGTTGC chrX:2707409-2707529 35 7.64e-05 ATTTAACCTT CAATGTCA ACGCATTGAC chrX:16073175-16073295 50 7.64e-05 GTACTTTAGT CAAGGTGA AGTCAGAGTC chrX:9103681-9103801 39 7.64e-05 AAAGTCAACT CAATGTCA CACAGTGTGA chr2R:9428187-9428307 75 7.64e-05 AATGACGTTT CAATGTCA ACCAAACACC chr3L:12829908-12830028 76 7.64e-05 AAGTTCGTTT CAATGTCA GTGGCAGGCG chr3R:4281278-4281398 59 9.35e-05 CTGCTGATTT CAAAGTCA AAAAGTCAAG chr2L:8196844-8196964 24 9.35e-05 GAAAATGTAT CAAAGTCA AAAAAAAGTC chr3L:6262136-6262256 40 9.35e-05 GACCTTCTCT CAAAGTCA AATGCGGTTG chr3R:15146894-15147014 53 1.10e-04 AAAGTCAAAT AAAGGTCA GTGGCGGCGT chr3R:12718773-12718893 95 1.10e-04 TATGTCATCT AAAGGTCA CCCACACCAC chr2L:1727301-1727421 6 1.10e-04 CTTTT AAAGGTCA GACCCAAAGT chr2L:4197596-4197716 69 1.24e-04 AAGGTTGCGT GAAGGTCG CGCAACACAG chr3L:6261041-6261161 53 1.24e-04 TAACCTTCAC GAAGGTCG TATTAATGAG chr2R:13171731-13171851 105 1.24e-04 AATGTCGAAT GAAGGTCG CCGGTGTT chr2R:24402401-24402521 72 1.38e-04 TTGCCTTCGC CAAGGGCA AAAACAGAAA chrX:7581543-7581663 71 1.38e-04 CTACCCGGTC CAAGGGCA ACTATATGTA chrX:12668894-12669014 88 1.38e-04 GAGGTTAAGG CAAGGGCA ATGGGGATCG chr3L:17004964-17005084 4 1.69e-04 aTC GAATGTCA AGTTCAAAGC chr2L:2372206-2372326 63 1.69e-04 GACCTAGTGG GAATGTCA TCGCTGCCGT chr3L:21319884-21320004 94 1.69e-04 GGGAGGCGGC GAAGGTGA CCCCGGGGCG chr3L:9358496-9358616 70 1.69e-04 AATATAACGG GAATGTCA TTTTTCTCTA chr2L:487118-487238 87 1.69e-04 TGCAGAAGGT GAAGGTGA CTCCAAAGGT chr3L:1202875-1202995 73 1.69e-04 TGCTCCGTTT GAAGGTGA CTCCCGTTCA chr3L:17945618-17945738 93 2.31e-04 ATGTTATTGC CAAGGACA TTTCAATACA chr3R:5346804-5346924 62 2.31e-04 AAAACCTTGT CAAGGACA AAGCACGCGA chr3R:9631722-9631842 70 2.31e-04 CATTCTCCCT GAAAGTCA AGGAGGTCAT chr3R:31717862-31717982 11 2.31e-04 CGCAGACGAG GAAAGTCA CCTCTAAAAA chr2R:16139045-16139165 88 2.31e-04 ATTTGGATGT CAATGTCG CAATGTATGA chr3R:10356066-10356186 59 2.31e-04 TGCTCCGCTT CAAGGACA CCTTGACATT chr3L:2748483-2748603 71 2.31e-04 TCCTTCATTT GAAAGTCA AATGCGTGTG chr2R:8913162-8913282 96 2.31e-04 TGACCTTACG CAAGGACA AATCGAGTGG chr2L:1143447-1143567 110 2.61e-04 TTGACCTCCA AAAGGTCG TTC chr3R:18572439-18572559 23 3.04e-04 GTTCGGCTGT CAAGGGCG TGCACCGGCC chr3L:6262335-6262455 50 3.04e-04 TGCGGAAGGC CAAGGGCG ACGGGGTTCG chr3L:19290582-19290702 36 3.56e-04 CTACCGAAAG AAATGTCA AAAGCAAACA chr3L:4409680-4409800 94 3.56e-04 CAAAAATAGC AAAGGTGA CCCCCAAAAC chr3R:22367835-22367955 82 3.56e-04 CGAAATGTGT AAAGGTGA AATAGAAGTC chr3L:14554017-14554137 108 4.18e-04 CAATGCAGAC AAAAGTCA GGACC chrX:10786753-10786873 74 4.18e-04 AACTTCTCAC AAAAGTCA CAGAATAAAA chr2R:22179700-22179820 1 4.18e-04 . GAAGGTGG CGCGTTGCGC chrX:12012340-12012460 42 4.18e-04 AATGAGTGTA GAAGGTGG CAGCCCTTTA chr2R:7988442-7988562 64 4.18e-04 GAGGTTTTTT AAAAGTCA TAAAAGAAAT chr3L:5923869-5923989 110 4.47e-04 TAATCACACT GAAAGTCG ATT chr2R:21715655-21715775 63 4.47e-04 CTGCTAAGGC CAAGGACG ACTACGATCG chr3L:17843074-17843194 3 4.47e-04 CC GAAAGTCG ACTTCCCGCC chr3L:16806492-16806612 99 4.77e-04 CATCACAGTA CAAGGGGA AGGGGCGGTA chr3R:9873436-9873556 65 4.92e-04 GAGGTCATTC CAAAGGCA ACAACAATGC chrX:8377783-8377903 44 5.36e-04 GTCGGCCATT GAAGGGCG AAGTCAGAGA chr2R:21312829-21312949 45 5.36e-04 CACCGAGCGT GAATGTGA ATGAAAGTGG chr2L:2755694-2755814 96 6.00e-04 TGCCCTTGAT CAAGGAGA TGTGTGGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21205023-21205143 1.5e-05 65_[+2]_47 chr3R:30449612-30449732 1.5e-05 11_[+2]_101 chr3R:10080896-10081016 1.5e-05 36_[+2]_76 chr2R:11847056-11847176 1.5e-05 46_[+2]_66 chrX:5427414-5427534 1.5e-05 38_[+2]_74 chr3R:26259155-26259275 1.5e-05 66_[+2]_46 chr2L:4456591-4456711 1.5e-05 85_[+2]_27 chrX:2362533-2362653 1.5e-05 59_[+2]_53 chr2R:20330774-20330894 1.5e-05 104_[+2]_8 chrX:13752778-13752898 1.5e-05 63_[+2]_49 chr2L:1143659-1143779 1.5e-05 77_[+2]_35 chrX:756801-756921 1.5e-05 65_[+2]_47 chr2L:9694337-9694457 1.5e-05 82_[+2]_30 chr2L:2132385-2132505 1.5e-05 79_[+2]_33 chr3L:10862027-10862147 3.1e-05 67_[+2]_45 chr3R:10888555-10888675 3.1e-05 13_[+2]_99 chrX:9596628-9596748 3.1e-05 38_[+2]_74 chr2L:21250952-21251072 4.4e-05 34_[+2]_78 chrX:3379484-3379604 4.4e-05 56_[+2]_56 chrX:2790279-2790399 4.4e-05 56_[+2]_56 chr2L:7427538-7427658 4.4e-05 60_[+2]_52 chr3L:13866439-13866559 4.4e-05 77_[+2]_35 chr3L:17929852-17929972 4.4e-05 55_[+2]_57 chr3L:19292153-19292273 4.4e-05 53_[+2]_59 chr2L:6667692-6667812 7.6e-05 67_[+2]_45 chr3R:30022686-30022806 7.6e-05 78_[+2]_34 chrX:5524433-5524553 7.6e-05 79_[+2]_33 chr2R:21532241-21532361 7.6e-05 105_[+2]_7 chr3R:5633603-5633723 7.6e-05 39_[+2]_73 chr3L:3903543-3903663 7.6e-05 41_[+2]_71 chrX:7069042-7069162 7.6e-05 52_[+2]_60 chrX:2707409-2707529 7.6e-05 34_[+2]_78 chrX:16073175-16073295 7.6e-05 49_[+2]_63 chrX:9103681-9103801 7.6e-05 38_[+2]_74 chr2R:9428187-9428307 7.6e-05 74_[+2]_38 chr3L:12829908-12830028 7.6e-05 75_[+2]_37 chr3R:4281278-4281398 9.4e-05 58_[+2]_54 chr2L:8196844-8196964 9.4e-05 23_[+2]_89 chr3L:6262136-6262256 9.4e-05 39_[+2]_73 chr3R:15146894-15147014 0.00011 52_[+2]_60 chr3R:12718773-12718893 0.00011 94_[+2]_18 chr2L:1727301-1727421 0.00011 5_[+2]_107 chr2L:4197596-4197716 0.00012 68_[+2]_44 chr3L:6261041-6261161 0.00012 52_[+2]_60 chr2R:13171731-13171851 0.00012 104_[+2]_8 chr2R:24402401-24402521 0.00014 71_[+2]_41 chrX:7581543-7581663 0.00014 70_[+2]_42 chrX:12668894-12669014 0.00014 87_[+2]_25 chr3L:17004964-17005084 0.00017 3_[+2]_109 chr2L:2372206-2372326 0.00017 62_[+2]_50 chr3L:21319884-21320004 0.00017 93_[+2]_19 chr3L:9358496-9358616 0.00017 69_[+2]_43 chr2L:487118-487238 0.00017 86_[+2]_26 chr3L:1202875-1202995 0.00017 72_[+2]_40 chr3L:17945618-17945738 0.00023 92_[+2]_20 chr3R:5346804-5346924 0.00023 61_[+2]_51 chr3R:9631722-9631842 0.00023 69_[+2]_43 chr3R:31717862-31717982 0.00023 10_[+2]_102 chr2R:16139045-16139165 0.00023 87_[+2]_25 chr3R:10356066-10356186 0.00023 58_[+2]_54 chr3L:2748483-2748603 0.00023 70_[+2]_42 chr2R:8913162-8913282 0.00023 95_[+2]_17 chr2L:1143447-1143567 0.00026 109_[+2]_3 chr3R:18572439-18572559 0.0003 22_[+2]_90 chr3L:6262335-6262455 0.0003 49_[+2]_63 chr3L:19290582-19290702 0.00036 35_[+2]_77 chr3L:4409680-4409800 0.00036 93_[+2]_19 chr3R:22367835-22367955 0.00036 81_[+2]_31 chr3L:14554017-14554137 0.00042 107_[+2]_5 chrX:10786753-10786873 0.00042 73_[+2]_39 chr2R:22179700-22179820 0.00042 [+2]_112 chrX:12012340-12012460 0.00042 41_[+2]_71 chr2R:7988442-7988562 0.00042 63_[+2]_49 chr3L:5923869-5923989 0.00045 109_[+2]_3 chr2R:21715655-21715775 0.00045 62_[+2]_50 chr3L:17843074-17843194 0.00045 2_[+2]_110 chr3L:16806492-16806612 0.00048 98_[+2]_14 chr3R:9873436-9873556 0.00049 64_[+2]_48 chrX:8377783-8377903 0.00054 43_[+2]_69 chr2R:21312829-21312949 0.00054 44_[+2]_68 chr2L:2755694-2755814 0.0006 95_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGGTCA width=8 seqs=81 chr3L:21205023-21205143 ( 66) CAAGGTCA 1 chr3R:30449612-30449732 ( 12) CAAGGTCA 1 chr3R:10080896-10081016 ( 37) CAAGGTCA 1 chr2R:11847056-11847176 ( 47) CAAGGTCA 1 chrX:5427414-5427534 ( 39) CAAGGTCA 1 chr3R:26259155-26259275 ( 67) CAAGGTCA 1 chr2L:4456591-4456711 ( 86) CAAGGTCA 1 chrX:2362533-2362653 ( 60) CAAGGTCA 1 chr2R:20330774-20330894 ( 105) CAAGGTCA 1 chrX:13752778-13752898 ( 64) CAAGGTCA 1 chr2L:1143659-1143779 ( 78) CAAGGTCA 1 chrX:756801-756921 ( 66) CAAGGTCA 1 chr2L:9694337-9694457 ( 83) CAAGGTCA 1 chr2L:2132385-2132505 ( 80) CAAGGTCA 1 chr3L:10862027-10862147 ( 68) GAAGGTCA 1 chr3R:10888555-10888675 ( 14) GAAGGTCA 1 chrX:9596628-9596748 ( 39) GAAGGTCA 1 chr2L:21250952-21251072 ( 35) CAAGGTCG 1 chrX:3379484-3379604 ( 57) CAAGGTCG 1 chrX:2790279-2790399 ( 57) CAAGGTCG 1 chr2L:7427538-7427658 ( 61) CAAGGTCG 1 chr3L:13866439-13866559 ( 78) CAAGGTCG 1 chr3L:17929852-17929972 ( 56) CAAGGTCG 1 chr3L:19292153-19292273 ( 54) CAAGGTCG 1 chr2L:6667692-6667812 ( 68) CAATGTCA 1 chr3R:30022686-30022806 ( 79) CAAGGTGA 1 chrX:5524433-5524553 ( 80) CAAGGTGA 1 chr2R:21532241-21532361 ( 106) CAAGGTGA 1 chr3R:5633603-5633723 ( 40) CAATGTCA 1 chr3L:3903543-3903663 ( 42) CAAGGTGA 1 chrX:7069042-7069162 ( 53) CAATGTCA 1 chrX:2707409-2707529 ( 35) CAATGTCA 1 chrX:16073175-16073295 ( 50) CAAGGTGA 1 chrX:9103681-9103801 ( 39) CAATGTCA 1 chr2R:9428187-9428307 ( 75) CAATGTCA 1 chr3L:12829908-12830028 ( 76) CAATGTCA 1 chr3R:4281278-4281398 ( 59) CAAAGTCA 1 chr2L:8196844-8196964 ( 24) CAAAGTCA 1 chr3L:6262136-6262256 ( 40) CAAAGTCA 1 chr3R:15146894-15147014 ( 53) AAAGGTCA 1 chr3R:12718773-12718893 ( 95) AAAGGTCA 1 chr2L:1727301-1727421 ( 6) AAAGGTCA 1 chr2L:4197596-4197716 ( 69) GAAGGTCG 1 chr3L:6261041-6261161 ( 53) GAAGGTCG 1 chr2R:13171731-13171851 ( 105) GAAGGTCG 1 chr2R:24402401-24402521 ( 72) CAAGGGCA 1 chrX:7581543-7581663 ( 71) CAAGGGCA 1 chrX:12668894-12669014 ( 88) CAAGGGCA 1 chr3L:17004964-17005084 ( 4) GAATGTCA 1 chr2L:2372206-2372326 ( 63) GAATGTCA 1 chr3L:21319884-21320004 ( 94) GAAGGTGA 1 chr3L:9358496-9358616 ( 70) GAATGTCA 1 chr2L:487118-487238 ( 87) GAAGGTGA 1 chr3L:1202875-1202995 ( 73) GAAGGTGA 1 chr3L:17945618-17945738 ( 93) CAAGGACA 1 chr3R:5346804-5346924 ( 62) CAAGGACA 1 chr3R:9631722-9631842 ( 70) GAAAGTCA 1 chr3R:31717862-31717982 ( 11) GAAAGTCA 1 chr2R:16139045-16139165 ( 88) CAATGTCG 1 chr3R:10356066-10356186 ( 59) CAAGGACA 1 chr3L:2748483-2748603 ( 71) GAAAGTCA 1 chr2R:8913162-8913282 ( 96) CAAGGACA 1 chr2L:1143447-1143567 ( 110) AAAGGTCG 1 chr3R:18572439-18572559 ( 23) CAAGGGCG 1 chr3L:6262335-6262455 ( 50) CAAGGGCG 1 chr3L:19290582-19290702 ( 36) AAATGTCA 1 chr3L:4409680-4409800 ( 94) AAAGGTGA 1 chr3R:22367835-22367955 ( 82) AAAGGTGA 1 chr3L:14554017-14554137 ( 108) AAAAGTCA 1 chrX:10786753-10786873 ( 74) AAAAGTCA 1 chr2R:22179700-22179820 ( 1) GAAGGTGG 1 chrX:12012340-12012460 ( 42) GAAGGTGG 1 chr2R:7988442-7988562 ( 64) AAAAGTCA 1 chr3L:5923869-5923989 ( 110) GAAAGTCG 1 chr2R:21715655-21715775 ( 63) CAAGGACG 1 chr3L:17843074-17843194 ( 3) GAAAGTCG 1 chr3L:16806492-16806612 ( 99) CAAGGGGA 1 chr3R:9873436-9873556 ( 65) CAAAGGCA 1 chrX:8377783-8377903 ( 44) GAAGGGCG 1 chr2R:21312829-21312949 ( 45) GAATGTGA 1 chr2L:2755694-2755814 ( 96) CAAGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2866 E= 2.0e-018 -109 135 13 -1298 193 -1298 -1298 -1298 193 -1298 -1298 -1298 -83 -1298 154 -68 -1298 -1298 208 -1298 -183 -1298 -126 168 -1298 175 -36 -1298 152 -1298 6 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 2.0e-018 0.123457 0.617284 0.259259 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.148148 0.000000 0.691358 0.160494 0.000000 0.000000 1.000000 0.000000 0.074074 0.000000 0.098765 0.827160 0.000000 0.814815 0.185185 0.000000 0.753086 0.000000 0.246914 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 regular expression -------------------------------------------------------------------------------- [CG]AAGGTC[AG] -------------------------------------------------------------------------------- Time 14.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TKYTKTTK MEME-3 width = 8 sites = 50 llr = 401 E-value = 1.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::3::::: probability G :4:16::6 matrix T a6794aa4 bits 2.1 1.9 * ** 1.7 * ** 1.5 * * ** Relative 1.2 * * ** Entropy 1.0 ******** (11.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTG consensus GC T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10089600-10089720 17 1.66e-05 CTGTTTGCTG TTTTGTTG TAGGCACATA chrX:12012340-12012460 86 1.66e-05 CATAGAGCGT TTTTGTTG TTCTATCTTT chr2R:21201270-21201390 77 1.66e-05 GTTAATTCCG TTTTGTTG TGATTCCATT chr2L:5225644-5225764 47 3.18e-05 ACACGAACCC TGTTGTTG AATCCAAAAC chr2L:21250952-21251072 20 3.18e-05 TCGCTATGGT TGTTGTTG GTTTGTGCAA chrX:3379484-3379604 12 3.18e-05 GTTGTTGGCT TGTTGTTG CTTTATTCGC chr3R:5346804-5346924 109 3.18e-05 AGCTGCACTT TGTTGTTG TGCT chr3R:18928402-18928522 27 3.18e-05 tggtgccagc tgttgttg ctgttgtttg chrX:9599808-9599928 23 3.18e-05 ACGCCGTAAT TGTTGTTG CTCGCTGGTC chr2L:2197816-2197936 62 3.18e-05 ggttgttggt tgttgttg tagttgctgt chr3L:17958382-17958502 72 3.18e-05 TTGCGTACTT TGTTGTTG CCGAGAGCCG chr2R:21312627-21312747 4 3.18e-05 AGT TGTTGTTG GGGGCTGTTT chr3L:2748483-2748603 23 3.18e-05 tttgtttgtt tgttgttG CTGCCCGCCC chr3R:23941818-23941938 3 4.98e-05 TT TTTTTTTG GTGGTTAGGG chr2L:4197808-4197928 7 4.98e-05 TTCACT TTTTTTTG AGCACACTTC chrX:16526448-16526568 44 4.98e-05 GTTCTTTTTT TTTTTTTG TGGCAGCTGA chr2L:5945867-5945987 113 4.98e-05 GAGTTATATA TTTTTTTG chr2R:22593535-22593655 39 6.64e-05 ATGCCTCAGC TGTTTTTG TTCTCCCGAC chr2L:1143659-1143779 39 6.64e-05 ATATTTGATT TGTTTTTG GCGTTTATAT chr2R:21075789-21075909 59 1.00e-04 TTCCTAAACA TTTTGTTT TGCTCTGCCG chr2R:10618602-10618722 105 1.00e-04 AACAGCCCAC TTTTGTTT TTACAACA chr3L:12834855-12834975 42 1.00e-04 TCAAATTCAT TTTTGTTT CTTTTAAGTA chrX:756801-756921 18 1.00e-04 TGTGGCTTGT TTTTGTTT TCTTTTTGCG chr3R:9872355-9872475 24 1.31e-04 AAGAACTTTT TGCTGTTG GAACGAGTCC chr3L:17563783-17563903 112 1.31e-04 ctgctgctgc tgctgttg c chr2R:7791556-7791676 46 1.31e-04 TGTGTATTTA TGTTGTTT TGCCGAAGAA chr3R:8670306-8670426 110 1.67e-04 gccttttaat ttcttttg ctt chrX:10786753-10786873 94 1.67e-04 GAATAAAAAC TTCTTTTG CAGAATCAGA chr2L:2900532-2900652 5 1.67e-04 TCTT TTTTTTTT TTTCACCGAT chr2R:7805455-7805575 59 1.67e-04 GTTTTCTGTT TTTTTTTT CGAGTTTTGG chr2R:21715655-21715775 19 1.67e-04 CCACGATATC TTCTTTTG ATTCGCTTAG chr2R:9189654-9189774 51 1.67e-04 AAGAGGCAAG TTCTTTTG GGGTATTTAC chr2L:20898183-20898303 27 1.67e-04 CACTTATGCC TTTTTTTT ACTTTTTCCA chr3R:28891887-28892007 88 2.01e-04 CGCCACCAAG TGTTTTTT GAGAGAAATG chr3L:11127706-11127826 106 2.01e-04 CCTTGCCACT TGCTTTTG TGGGTGG chrX:3968098-3968218 79 2.01e-04 GCCGGCGGCA TGCTTTTG TCCAGCGAGG chr3L:8523331-8523451 81 2.01e-04 CCTCTTGAAG TGCTTTTG CGGCAGGGCC chrX:19506012-19506132 79 2.18e-04 atgtttctgt ttctgttt cgctttagtt chr2L:5944847-5944967 59 2.18e-04 ACTCGAGCTG TTCTGTTT GCCGATTATT chr3L:11113434-11113554 83 2.18e-04 CCTTTAGAAC TTCTGTTT TTCGTACATT chrX:2362533-2362653 108 2.18e-04 TTATTTTGGT TTCTGTTT TACCA chr3L:300013-300133 69 2.33e-04 CACTTGCCAG TGCTGTTT GCGGAAGTCC chr2L:20431328-20431448 58 2.33e-04 CAATCTTGTT TGCTGTTT GCACTTGGCA chr3L:3930829-3930949 10 2.52e-04 GTAAATGGT TTCTTTTT GACAGACTGt chrX:13762011-13762131 61 2.52e-04 GCGTTTGTTC TTCTTTTT GGGCTTGGCA chr3R:24047246-24047366 35 2.84e-04 GCGGGGTGGT TTTGGTTG CTCATTTGCT chr3R:14058771-14058891 99 3.14e-04 TCGTTCTGTG TTTGTTTG CTCCCCCGAT chr3R:15146894-15147014 2 3.30e-04 G TGTGTTTG TGGCAGGCAG chr2L:7427538-7427658 48 3.61e-04 CCACTGCTGA TTTGGTTT ATGGCCAAGG chr2L:10395972-10396092 15 3.61e-04 CACTAAGGTT TTTGGTTT TTAAGATTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10089600-10089720 1.7e-05 16_[+3]_96 chrX:12012340-12012460 1.7e-05 85_[+3]_27 chr2R:21201270-21201390 1.7e-05 76_[+3]_36 chr2L:5225644-5225764 3.2e-05 46_[+3]_66 chr2L:21250952-21251072 3.2e-05 19_[+3]_93 chrX:3379484-3379604 3.2e-05 11_[+3]_101 chr3R:5346804-5346924 3.2e-05 108_[+3]_4 chr3R:18928402-18928522 3.2e-05 26_[+3]_86 chrX:9599808-9599928 3.2e-05 22_[+3]_90 chr2L:2197816-2197936 3.2e-05 61_[+3]_51 chr3L:17958382-17958502 3.2e-05 71_[+3]_41 chr2R:21312627-21312747 3.2e-05 3_[+3]_109 chr3L:2748483-2748603 3.2e-05 22_[+3]_90 chr3R:23941818-23941938 5e-05 2_[+3]_110 chr2L:4197808-4197928 5e-05 6_[+3]_106 chrX:16526448-16526568 5e-05 43_[+3]_69 chr2L:5945867-5945987 5e-05 112_[+3] chr2R:22593535-22593655 6.6e-05 38_[+3]_74 chr2L:1143659-1143779 6.6e-05 38_[+3]_74 chr2R:21075789-21075909 0.0001 58_[+3]_54 chr2R:10618602-10618722 0.0001 104_[+3]_8 chr3L:12834855-12834975 0.0001 41_[+3]_71 chrX:756801-756921 0.0001 17_[+3]_95 chr3R:9872355-9872475 0.00013 23_[+3]_89 chr3L:17563783-17563903 0.00013 111_[+3]_1 chr2R:7791556-7791676 0.00013 45_[+3]_67 chr3R:8670306-8670426 0.00017 109_[+3]_3 chrX:10786753-10786873 0.00017 93_[+3]_19 chr2L:2900532-2900652 0.00017 4_[+3]_108 chr2R:7805455-7805575 0.00017 58_[+3]_54 chr2R:21715655-21715775 0.00017 18_[+3]_94 chr2R:9189654-9189774 0.00017 50_[+3]_62 chr2L:20898183-20898303 0.00017 26_[+3]_86 chr3R:28891887-28892007 0.0002 87_[+3]_25 chr3L:11127706-11127826 0.0002 105_[+3]_7 chrX:3968098-3968218 0.0002 78_[+3]_34 chr3L:8523331-8523451 0.0002 80_[+3]_32 chrX:19506012-19506132 0.00022 78_[+3]_34 chr2L:5944847-5944967 0.00022 58_[+3]_54 chr3L:11113434-11113554 0.00022 82_[+3]_30 chrX:2362533-2362653 0.00022 107_[+3]_5 chr3L:300013-300133 0.00023 68_[+3]_44 chr2L:20431328-20431448 0.00023 57_[+3]_55 chr3L:3930829-3930949 0.00025 9_[+3]_103 chrX:13762011-13762131 0.00025 60_[+3]_52 chr3R:24047246-24047366 0.00028 34_[+3]_78 chr3R:14058771-14058891 0.00031 98_[+3]_14 chr3R:15146894-15147014 0.00033 1_[+3]_111 chr2L:7427538-7427658 0.00036 47_[+3]_65 chr2L:10395972-10396092 0.00036 14_[+3]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKYTKTTK width=8 seqs=50 chr3R:10089600-10089720 ( 17) TTTTGTTG 1 chrX:12012340-12012460 ( 86) TTTTGTTG 1 chr2R:21201270-21201390 ( 77) TTTTGTTG 1 chr2L:5225644-5225764 ( 47) TGTTGTTG 1 chr2L:21250952-21251072 ( 20) TGTTGTTG 1 chrX:3379484-3379604 ( 12) TGTTGTTG 1 chr3R:5346804-5346924 ( 109) TGTTGTTG 1 chr3R:18928402-18928522 ( 27) TGTTGTTG 1 chrX:9599808-9599928 ( 23) TGTTGTTG 1 chr2L:2197816-2197936 ( 62) TGTTGTTG 1 chr3L:17958382-17958502 ( 72) TGTTGTTG 1 chr2R:21312627-21312747 ( 4) TGTTGTTG 1 chr3L:2748483-2748603 ( 23) TGTTGTTG 1 chr3R:23941818-23941938 ( 3) TTTTTTTG 1 chr2L:4197808-4197928 ( 7) TTTTTTTG 1 chrX:16526448-16526568 ( 44) TTTTTTTG 1 chr2L:5945867-5945987 ( 113) TTTTTTTG 1 chr2R:22593535-22593655 ( 39) TGTTTTTG 1 chr2L:1143659-1143779 ( 39) TGTTTTTG 1 chr2R:21075789-21075909 ( 59) TTTTGTTT 1 chr2R:10618602-10618722 ( 105) TTTTGTTT 1 chr3L:12834855-12834975 ( 42) TTTTGTTT 1 chrX:756801-756921 ( 18) TTTTGTTT 1 chr3R:9872355-9872475 ( 24) TGCTGTTG 1 chr3L:17563783-17563903 ( 112) TGCTGTTG 1 chr2R:7791556-7791676 ( 46) TGTTGTTT 1 chr3R:8670306-8670426 ( 110) TTCTTTTG 1 chrX:10786753-10786873 ( 94) TTCTTTTG 1 chr2L:2900532-2900652 ( 5) TTTTTTTT 1 chr2R:7805455-7805575 ( 59) TTTTTTTT 1 chr2R:21715655-21715775 ( 19) TTCTTTTG 1 chr2R:9189654-9189774 ( 51) TTCTTTTG 1 chr2L:20898183-20898303 ( 27) TTTTTTTT 1 chr3R:28891887-28892007 ( 88) TGTTTTTT 1 chr3L:11127706-11127826 ( 106) TGCTTTTG 1 chrX:3968098-3968218 ( 79) TGCTTTTG 1 chr3L:8523331-8523451 ( 81) TGCTTTTG 1 chrX:19506012-19506132 ( 79) TTCTGTTT 1 chr2L:5944847-5944967 ( 59) TTCTGTTT 1 chr3L:11113434-11113554 ( 83) TTCTGTTT 1 chrX:2362533-2362653 ( 108) TTCTGTTT 1 chr3L:300013-300133 ( 69) TGCTGTTT 1 chr2L:20431328-20431448 ( 58) TGCTGTTT 1 chr3L:3930829-3930949 ( 10) TTCTTTTT 1 chrX:13762011-13762131 ( 61) TTCTTTTT 1 chr3R:24047246-24047366 ( 35) TTTGGTTG 1 chr3R:14058771-14058891 ( 99) TTTGTTTG 1 chr3R:15146894-15147014 ( 2) TGTGTTTG 1 chr2L:7427538-7427658 ( 48) TTTGGTTT 1 chr2L:10395972-10396092 ( 15) TTTGGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 1.9e+000 -1229 -1229 -1229 195 -1229 -1229 89 112 -1229 49 -1229 136 -1229 -1229 -125 180 -1229 -1229 129 70 -1229 -1229 -1229 195 -1229 -1229 -1229 195 -1229 -1229 139 56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.9e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440000 0.560000 0.000000 0.340000 0.000000 0.660000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.580000 0.420000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.620000 0.380000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTKTTK MEME-3 regular expression -------------------------------------------------------------------------------- T[TG][TC]T[GT]TT[GT] -------------------------------------------------------------------------------- Time 20.41 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAMAA MEME-4 width = 8 sites = 53 llr = 417 E-value = 2.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa8a65a8 pos.-specific C ::2:13:: probability G ::::3::2 matrix T ::::12:: bits 2.1 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.2 **** ** Entropy 1.0 **** ** (11.4 bits) 0.8 **** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15824648-15824768 68 2.29e-05 CTTGGCCTCT AAAAAAAA CAATTGAAAG chrX:13278663-13278783 15 2.29e-05 GGGGAACAGA AAAAAAAA GACGAAAAAC chr3L:22134429-22134549 4 2.29e-05 CCA AAAAAAAA CATGAGGAAA chr3L:3930829-3930949 41 2.29e-05 atgaaaaagc aaaaaaaa aaaacgaaac chrX:3379484-3379604 91 2.29e-05 GGCGTTATAA AAAAAAAA AACCAAAAGC chr3L:682575-682695 92 2.29e-05 GCGCACTTCG AAAAAAAA ACAATTAGCG chr3L:17004964-17005084 97 2.29e-05 GCAAACAGAA AAAAAAAA CGAAATAAAC chr3L:14783066-14783186 6 2.29e-05 ACTTA AAAAAAAA AAACAACAAA chr2L:4197596-4197716 14 2.29e-05 TTATTGGCGC AAAAAAAA CAATGTTAGA chr3R:7492327-7492447 32 2.29e-05 GTTGTTATCG AAAAAAAA GTTTTTTCAC chr2L:9694337-9694457 28 2.29e-05 AAACCAAAAA AAAAAAAA CCAATGTTCG chrX:12668894-12669014 33 2.29e-05 AAAAGAAAAC AAAAAAAA ACTATAGAGG chr3R:12718773-12718893 9 2.29e-05 AAAGCAAC AAAAAAAA CTGACAAAAA chr3R:5346804-5346924 46 4.40e-05 AAAATGCTGG AAAAACAA AACCTTGTCA chr3L:18837955-18838075 103 6.46e-05 GTAAATAACC AAAAGAAA TGGAGAGATA chr2L:18974081-18974201 23 6.46e-05 TACCAACCCG AAAAGAAA GACCTTGCTT chr2R:10617660-10617780 104 6.46e-05 TTTTACCAAG AAAAGAAA AAACTTCGC chr2R:7988442-7988562 73 6.46e-05 TAAAAGTCAT AAAAGAAA TTCCCGACGC chr2L:20898183-20898303 71 6.46e-05 CATAGCGGTC AAAAGAAA TGACAAGAAC chr2R:14903820-14903940 108 8.56e-05 AACATACAGC AACAAAAA ATAAA chrX:16526448-16526568 100 1.05e-04 GTTGTAGCCC AAAAGCAA AGGGGCGTGC chr3R:31717862-31717982 25 1.05e-04 GTCACCTCTA AAAAGCAA GCAGCACGCA chr2R:21312627-21312747 86 1.05e-04 TAATAGAATC AAAAGCAA TTGCTTAAGA chr2R:10111079-10111199 101 1.05e-04 TTGAAACGTC AAAAGCAA AAGCGAAACT chr2R:23940724-23940844 63 1.05e-04 AATAAAAGTG AAAAGCAA ATCCGAGCTG chr2L:7810559-7810679 2 1.27e-04 A AAAAATAA CATTATAATT chrX:6986276-6986396 27 1.27e-04 CACTTCGTCT AAAAATAA CCACAAATTG chr2L:19493674-19493794 83 1.27e-04 AGGTCATCTT AAAAATAA TTTTTCGGGC chr2L:5225644-5225764 62 1.67e-04 TTGAATCCAA AACAACAA AAGCTTAATA chr3R:5257423-5257543 71 1.67e-04 GAGGTGGGGT AAAAAAAG CTGGGAGAGC chr3R:17705920-17706040 48 1.67e-04 caagaacaag aacaacaa TGACCTTGGC chr3R:10080896-10081016 65 1.67e-04 TCATGCGCTG AAAAAAAG GGGAAGGGTA chr2R:7791896-7792016 78 1.67e-04 TACTTTATTC AACAACAA TAAATATGTA chr2L:8196844-8196964 32 1.67e-04 ATCAAAGTCA AAAAAAAG TCAAACGCTT chrX:13752778-13752898 78 1.67e-04 GTCACGCAAC AACAACAA CACCAAAGCT chr2R:21312829-21312949 85 1.67e-04 TAGAGCAGAT AAAAAAAG ACCACAGATT chr2L:2132385-2132505 101 1.67e-04 AAAGGTTATT AACAACAA CCAACTGACA chr2R:24402401-24402521 82 1.86e-04 CAAGGGCAAA AACAGAAA CAACACACAC chr3R:14739979-14740099 33 2.06e-04 ACACTCTCGC AAAAGTAA CGGAAGCGAT chrX:13994841-13994961 111 2.25e-04 GTTGCAGCAG AAAAACAG AT chr3R:29113480-29113600 10 2.82e-04 GATTACGTA AACAGCAA GCAGGCGGTT chr3L:3903543-3903663 25 2.82e-04 GAACGCGAAG AACAGCAA GCCGTACGGC chr3L:17595955-17596075 113 2.82e-04 GAAACTTTTG AAAACAAA chr2L:1987423-1987543 7 2.82e-04 CTGGGG AAAACAAA CACAAATGTG chr3R:5670445-5670565 41 3.26e-04 acaaccaggc aacaataa cacttcacac chr3R:26261537-26261657 100 3.26e-04 AAAGGTATCC AAAATAAA GCTCATTCTG chr3L:17929852-17929972 110 3.26e-04 AGCTGCCTTC AACAATAA GCA chrX:2790279-2790399 68 3.44e-04 AAGGTCGTCG AACAAAAG GTGAATGTGT chr2R:7510146-7510266 24 3.81e-04 CACGTCGCGG AAAACCAA AACACGAACA chr3R:14058771-14058891 17 4.22e-04 TAATGGCTCT AAAAATAG AGCCCCAGCG chrX:15986843-15986963 104 4.22e-04 GTTGGCTAAA AAAATCAA CTTGCTTGA chr2R:17792756-17792876 78 4.22e-04 TTGGAAAATC AAAATCAA GAGCTGGCGA chr3L:4409680-4409800 85 4.22e-04 GTGCAAGCCC AAAAATAG CAAAGGTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15824648-15824768 2.3e-05 67_[+4]_45 chrX:13278663-13278783 2.3e-05 14_[+4]_98 chr3L:22134429-22134549 2.3e-05 3_[+4]_109 chr3L:3930829-3930949 2.3e-05 40_[+4]_72 chrX:3379484-3379604 2.3e-05 90_[+4]_22 chr3L:682575-682695 2.3e-05 91_[+4]_21 chr3L:17004964-17005084 2.3e-05 96_[+4]_16 chr3L:14783066-14783186 2.3e-05 5_[+4]_107 chr2L:4197596-4197716 2.3e-05 13_[+4]_99 chr3R:7492327-7492447 2.3e-05 31_[+4]_81 chr2L:9694337-9694457 2.3e-05 27_[+4]_85 chrX:12668894-12669014 2.3e-05 32_[+4]_80 chr3R:12718773-12718893 2.3e-05 8_[+4]_104 chr3R:5346804-5346924 4.4e-05 45_[+4]_67 chr3L:18837955-18838075 6.5e-05 102_[+4]_10 chr2L:18974081-18974201 6.5e-05 22_[+4]_90 chr2R:10617660-10617780 6.5e-05 103_[+4]_9 chr2R:7988442-7988562 6.5e-05 72_[+4]_40 chr2L:20898183-20898303 6.5e-05 70_[+4]_42 chr2R:14903820-14903940 8.6e-05 107_[+4]_5 chrX:16526448-16526568 0.0001 99_[+4]_13 chr3R:31717862-31717982 0.0001 24_[+4]_88 chr2R:21312627-21312747 0.0001 85_[+4]_27 chr2R:10111079-10111199 0.0001 100_[+4]_12 chr2R:23940724-23940844 0.0001 62_[+4]_50 chr2L:7810559-7810679 0.00013 1_[+4]_111 chrX:6986276-6986396 0.00013 26_[+4]_86 chr2L:19493674-19493794 0.00013 82_[+4]_30 chr2L:5225644-5225764 0.00017 61_[+4]_51 chr3R:5257423-5257543 0.00017 70_[+4]_42 chr3R:17705920-17706040 0.00017 47_[+4]_65 chr3R:10080896-10081016 0.00017 64_[+4]_48 chr2R:7791896-7792016 0.00017 77_[+4]_35 chr2L:8196844-8196964 0.00017 31_[+4]_81 chrX:13752778-13752898 0.00017 77_[+4]_35 chr2R:21312829-21312949 0.00017 84_[+4]_28 chr2L:2132385-2132505 0.00017 100_[+4]_12 chr2R:24402401-24402521 0.00019 81_[+4]_31 chr3R:14739979-14740099 0.00021 32_[+4]_80 chrX:13994841-13994961 0.00023 110_[+4]_2 chr3R:29113480-29113600 0.00028 9_[+4]_103 chr3L:3903543-3903663 0.00028 24_[+4]_88 chr3L:17595955-17596075 0.00028 112_[+4] chr2L:1987423-1987543 0.00028 6_[+4]_106 chr3R:5670445-5670565 0.00033 40_[+4]_72 chr3R:26261537-26261657 0.00033 99_[+4]_13 chr3L:17929852-17929972 0.00033 109_[+4]_3 chrX:2790279-2790399 0.00034 67_[+4]_45 chr2R:7510146-7510266 0.00038 23_[+4]_89 chr3R:14058771-14058891 0.00042 16_[+4]_96 chrX:15986843-15986963 0.00042 103_[+4]_9 chr2R:17792756-17792876 0.00042 77_[+4]_35 chr3L:4409680-4409800 0.00042 84_[+4]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAMAA width=8 seqs=53 chr3L:15824648-15824768 ( 68) AAAAAAAA 1 chrX:13278663-13278783 ( 15) AAAAAAAA 1 chr3L:22134429-22134549 ( 4) AAAAAAAA 1 chr3L:3930829-3930949 ( 41) AAAAAAAA 1 chrX:3379484-3379604 ( 91) AAAAAAAA 1 chr3L:682575-682695 ( 92) AAAAAAAA 1 chr3L:17004964-17005084 ( 97) AAAAAAAA 1 chr3L:14783066-14783186 ( 6) AAAAAAAA 1 chr2L:4197596-4197716 ( 14) AAAAAAAA 1 chr3R:7492327-7492447 ( 32) AAAAAAAA 1 chr2L:9694337-9694457 ( 28) AAAAAAAA 1 chrX:12668894-12669014 ( 33) AAAAAAAA 1 chr3R:12718773-12718893 ( 9) AAAAAAAA 1 chr3R:5346804-5346924 ( 46) AAAAACAA 1 chr3L:18837955-18838075 ( 103) AAAAGAAA 1 chr2L:18974081-18974201 ( 23) AAAAGAAA 1 chr2R:10617660-10617780 ( 104) AAAAGAAA 1 chr2R:7988442-7988562 ( 73) AAAAGAAA 1 chr2L:20898183-20898303 ( 71) AAAAGAAA 1 chr2R:14903820-14903940 ( 108) AACAAAAA 1 chrX:16526448-16526568 ( 100) AAAAGCAA 1 chr3R:31717862-31717982 ( 25) AAAAGCAA 1 chr2R:21312627-21312747 ( 86) AAAAGCAA 1 chr2R:10111079-10111199 ( 101) AAAAGCAA 1 chr2R:23940724-23940844 ( 63) AAAAGCAA 1 chr2L:7810559-7810679 ( 2) AAAAATAA 1 chrX:6986276-6986396 ( 27) AAAAATAA 1 chr2L:19493674-19493794 ( 83) AAAAATAA 1 chr2L:5225644-5225764 ( 62) AACAACAA 1 chr3R:5257423-5257543 ( 71) AAAAAAAG 1 chr3R:17705920-17706040 ( 48) AACAACAA 1 chr3R:10080896-10081016 ( 65) AAAAAAAG 1 chr2R:7791896-7792016 ( 78) AACAACAA 1 chr2L:8196844-8196964 ( 32) AAAAAAAG 1 chrX:13752778-13752898 ( 78) AACAACAA 1 chr2R:21312829-21312949 ( 85) AAAAAAAG 1 chr2L:2132385-2132505 ( 101) AACAACAA 1 chr2R:24402401-24402521 ( 82) AACAGAAA 1 chr3R:14739979-14740099 ( 33) AAAAGTAA 1 chrX:13994841-13994961 ( 111) AAAAACAG 1 chr3R:29113480-29113600 ( 10) AACAGCAA 1 chr3L:3903543-3903663 ( 25) AACAGCAA 1 chr3L:17595955-17596075 ( 113) AAAACAAA 1 chr2L:1987423-1987543 ( 7) AAAACAAA 1 chr3R:5670445-5670565 ( 41) AACAATAA 1 chr3R:26261537-26261657 ( 100) AAAATAAA 1 chr3L:17929852-17929972 ( 110) AACAATAA 1 chrX:2790279-2790399 ( 68) AACAAAAG 1 chr2R:7510146-7510266 ( 24) AAAACCAA 1 chr3R:14058771-14058891 ( 17) AAAAATAG 1 chrX:15986843-15986963 ( 104) AAAATCAA 1 chr2R:17792756-17792876 ( 78) AAAATCAA 1 chr3L:4409680-4409800 ( 85) AAAAATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2363 E= 2.1e+001 193 -1237 -1237 -1237 193 -1237 -1237 -1237 156 -10 -1237 -1237 193 -1237 -1237 -1237 124 -209 15 -219 101 41 -1237 -77 193 -1237 -1237 -1237 169 -1237 -65 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 2.1e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.773585 0.226415 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.622642 0.056604 0.264151 0.056604 0.528302 0.320755 0.000000 0.150943 1.000000 0.000000 0.000000 0.000000 0.849057 0.000000 0.150943 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 regular expression -------------------------------------------------------------------------------- AA[AC]A[AG][AC]AA -------------------------------------------------------------------------------- Time 26.57 secs. ******************************************************************************** ******************************************************************************** MOTIF RCACACAC MEME-5 width = 8 sites = 34 llr = 287 E-value = 9.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 61a:a:9: pos.-specific C :9:a:8:8 probability G 4:::::11 matrix T :::::2:1 bits 2.1 * 1.9 ** 1.7 **** 1.5 **** Relative 1.2 ******* Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21853704-21853824 103 1.64e-05 ATAATAACGC ACACACAC TCGCACACGC chr3R:14739979-14740099 81 1.64e-05 TGCCCACCAC ACACACAC ATCCTTATAC chr3R:30013255-30013375 31 1.64e-05 AGCCACGTCG ACACACAC GGTCAAGTTT chr3R:5670445-5670565 69 1.64e-05 acgtacactc acacacac gcaacacaGT chrX:13994841-13994961 66 1.64e-05 acacacacac acacacac GTGCACTGCG chr3R:24047246-24047366 79 1.64e-05 TCTTTTTCGc acacacac tgacacatta chr2R:24402401-24402521 108 1.64e-05 ACTTATGCAA ACACACAC GCAGA chr2L:4197596-4197716 110 1.64e-05 acacccacac acacacac aca chr3L:6261041-6261161 13 1.64e-05 CCACAAACAG ACACACAC ATACTGCTTA chr3L:16660040-16660160 4 1.64e-05 cac acacacac acaATCAGGC chr3L:9358496-9358616 13 1.64e-05 Gcactcacac acacacac acaAGCGCAG chr2L:1727513-1727633 102 3.12e-05 GGATGCACAA GCACACAC CAAGAGTCTA chr3R:31717862-31717982 73 3.12e-05 CAGATACAAG Gcacacac aaataaaaag chr3R:30134235-30134355 4 3.12e-05 AGA GCACACAC CCACCTCGAA chr2R:21648322-21648442 92 6.35e-05 acatatgtac acacatac atacgtgtat chr2L:7427538-7427658 1 6.35e-05 . ACACATAC CCATGCGATT chr2L:2755694-2755814 53 6.35e-05 ATGACTATGT ACACACGC ACAGGAAGTT chr3L:9358289-9358409 40 6.35e-05 AGCGAAGGCG ACACACGC TCATACGTTT chr2L:10395972-10396092 88 6.35e-05 GCGACCAATC ACACATAC CGTCATAACT chr3R:22367835-22367955 3 6.35e-05 AA ACACATAC ACACAAGCAC chr3L:5923869-5923989 1 1.09e-04 . GCACACGC TCGTGGAACG chr3R:10089600-10089720 28 1.09e-04 TTTGTTGTAG GCACATAC TGTTGCATAC chrX:9599808-9599928 9 1.09e-04 GCTACAAG GCACACGC CGTAATTGTT chr2R:11665532-11665652 2 1.26e-04 C ACACACAT AGACGAGCCC chr3L:21205023-21205143 81 1.41e-04 TCATTACCAG GCACACAG ATACTCGGCC chr3L:11550495-11550615 88 1.41e-04 TCACACCTCC GCACACAG AACAACTGGC chr3L:18998104-18998224 64 1.41e-04 TTCTTATCAC GCACACAG GGGCCTCCAG chr3L:15824648-15824768 92 1.74e-04 AAAGCAGAAA AAACACAC GGGCAGTTCA chr3R:18244754-18244874 29 1.74e-04 CCCCTTTTCT GCACACAT TAACGTCAGC chr3L:17995310-17995430 112 1.74e-04 CCCCTCACAA AAACACAC C chr2L:2132385-2132505 67 1.74e-04 CACGGCGTCG GCACACAT TTTTTCAAGG chr3R:21198900-21199020 54 1.90e-04 CTAATGGATT ACACATGC TCGAGTGTTG chr2R:7766512-7766632 75 2.39e-04 ATAGAAAGAG ACACAAAC TTGTGGGGGT chr2R:9428187-9428307 23 3.49e-04 CCTTTTTTCC GCCCACAC TTCATTGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21853704-21853824 1.6e-05 102_[+5]_10 chr3R:14739979-14740099 1.6e-05 80_[+5]_32 chr3R:30013255-30013375 1.6e-05 30_[+5]_82 chr3R:5670445-5670565 1.6e-05 68_[+5]_44 chrX:13994841-13994961 1.6e-05 65_[+5]_47 chr3R:24047246-24047366 1.6e-05 78_[+5]_34 chr2R:24402401-24402521 1.6e-05 107_[+5]_5 chr2L:4197596-4197716 1.6e-05 109_[+5]_3 chr3L:6261041-6261161 1.6e-05 12_[+5]_100 chr3L:16660040-16660160 1.6e-05 3_[+5]_109 chr3L:9358496-9358616 1.6e-05 12_[+5]_100 chr2L:1727513-1727633 3.1e-05 101_[+5]_11 chr3R:31717862-31717982 3.1e-05 72_[+5]_40 chr3R:30134235-30134355 3.1e-05 3_[+5]_109 chr2R:21648322-21648442 6.3e-05 91_[+5]_21 chr2L:7427538-7427658 6.3e-05 [+5]_112 chr2L:2755694-2755814 6.3e-05 52_[+5]_60 chr3L:9358289-9358409 6.3e-05 39_[+5]_73 chr2L:10395972-10396092 6.3e-05 87_[+5]_25 chr3R:22367835-22367955 6.3e-05 2_[+5]_110 chr3L:5923869-5923989 0.00011 [+5]_112 chr3R:10089600-10089720 0.00011 27_[+5]_85 chrX:9599808-9599928 0.00011 8_[+5]_104 chr2R:11665532-11665652 0.00013 1_[+5]_111 chr3L:21205023-21205143 0.00014 80_[+5]_32 chr3L:11550495-11550615 0.00014 87_[+5]_25 chr3L:18998104-18998224 0.00014 63_[+5]_49 chr3L:15824648-15824768 0.00017 91_[+5]_21 chr3R:18244754-18244874 0.00017 28_[+5]_84 chr3L:17995310-17995430 0.00017 111_[+5]_1 chr2L:2132385-2132505 0.00017 66_[+5]_46 chr3R:21198900-21199020 0.00019 53_[+5]_59 chr2R:7766512-7766632 0.00024 74_[+5]_38 chr2R:9428187-9428307 0.00035 22_[+5]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACACAC width=8 seqs=34 chr3R:21853704-21853824 ( 103) ACACACAC 1 chr3R:14739979-14740099 ( 81) ACACACAC 1 chr3R:30013255-30013375 ( 31) ACACACAC 1 chr3R:5670445-5670565 ( 69) ACACACAC 1 chrX:13994841-13994961 ( 66) ACACACAC 1 chr3R:24047246-24047366 ( 79) ACACACAC 1 chr2R:24402401-24402521 ( 108) ACACACAC 1 chr2L:4197596-4197716 ( 110) ACACACAC 1 chr3L:6261041-6261161 ( 13) ACACACAC 1 chr3L:16660040-16660160 ( 4) ACACACAC 1 chr3L:9358496-9358616 ( 13) ACACACAC 1 chr2L:1727513-1727633 ( 102) GCACACAC 1 chr3R:31717862-31717982 ( 73) GCACACAC 1 chr3R:30134235-30134355 ( 4) GCACACAC 1 chr2R:21648322-21648442 ( 92) ACACATAC 1 chr2L:7427538-7427658 ( 1) ACACATAC 1 chr2L:2755694-2755814 ( 53) ACACACGC 1 chr3L:9358289-9358409 ( 40) ACACACGC 1 chr2L:10395972-10396092 ( 88) ACACATAC 1 chr3R:22367835-22367955 ( 3) ACACATAC 1 chr3L:5923869-5923989 ( 1) GCACACGC 1 chr3R:10089600-10089720 ( 28) GCACATAC 1 chrX:9599808-9599928 ( 9) GCACACGC 1 chr2R:11665532-11665652 ( 2) ACACACAT 1 chr3L:21205023-21205143 ( 81) GCACACAG 1 chr3L:11550495-11550615 ( 88) GCACACAG 1 chr3L:18998104-18998224 ( 64) GCACACAG 1 chr3L:15824648-15824768 ( 92) AAACACAC 1 chr3R:18244754-18244874 ( 29) GCACACAT 1 chr3L:17995310-17995430 ( 112) AAACACAC 1 chr2L:2132385-2132505 ( 67) GCACACAT 1 chr3R:21198900-21199020 ( 54) ACACATGC 1 chr2R:7766512-7766632 ( 75) ACACAAAC 1 chr2R:9428187-9428307 ( 23) GCCCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 9.8e+003 130 -1173 57 -1173 -216 196 -1173 -1173 188 -304 -1173 -1173 -1173 205 -1173 -1173 193 -1173 -1173 -1173 -316 171 -1173 -55 170 -1173 -69 -1173 -1173 177 -143 -155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 9.8e+003 0.647059 0.000000 0.352941 0.000000 0.058824 0.941176 0.000000 0.000000 0.970588 0.029412 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.029412 0.794118 0.000000 0.176471 0.852941 0.000000 0.147059 0.000000 0.000000 0.823529 0.088235 0.088235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 regular expression -------------------------------------------------------------------------------- [AG]CACACAC -------------------------------------------------------------------------------- Time 32.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1727301-1727421 1.17e-01 120 chr3L:19292153-19292273 4.70e-02 53_[+2(4.45e-05)]_59 chr2R:13171731-13171851 8.42e-02 120 chr3R:12718773-12718893 1.23e-04 8_[+4(2.29e-05)]_5_[+4(4.40e-05)]_\ 91 chr2R:23940724-23940844 4.11e-03 120 chr3R:18226877-18226997 7.93e-01 120 chr2L:2132385-2132505 5.04e-04 79_[+2(1.54e-05)]_33 chr3L:6262136-6262256 1.98e-03 28_[+1(4.62e-05)]_3_[+2(9.35e-05)]_\ 73 chr2R:7532846-7532966 1.24e-01 120 chr3R:22367835-22367955 2.15e-02 2_[+5(6.35e-05)]_110 chr2R:8913162-8913282 2.06e-02 120 chr3L:2748483-2748603 4.46e-04 22_[+3(3.18e-05)]_90 chr2L:1143447-1143567 3.34e-01 120 chr2R:21201069-21201189 4.51e-01 120 chrX:19667858-19667978 9.74e-01 120 chrX:20965815-20965935 4.51e-02 31_[+1(1.49e-05)]_81 chr2R:7792961-7793081 3.08e-01 120 chr3R:10356066-10356186 5.61e-03 69_[+1(3.10e-05)]_43 chr3L:12829908-12830028 1.16e-01 75_[+2(7.64e-05)]_37 chrX:9118804-9118924 2.94e-01 120 chrX:18857501-18857621 8.60e-01 120 chrX:12668894-12669014 1.99e-02 22_[+4(6.46e-05)]_2_[+4(2.29e-05)]_\ 80 chr2R:10111079-10111199 1.28e-04 80_[+2(3.06e-05)]_32 chrX:9596628-9596748 1.10e-01 38_[+2(3.06e-05)]_74 chr3L:1202875-1202995 3.71e-02 120 chr2L:9694337-9694457 8.18e-04 22_[+4(2.29e-05)]_52_[+2(1.54e-05)]_\ 30 chr3L:17929852-17929972 1.91e-02 55_[+2(4.45e-05)]_57 chr2R:21312829-21312949 3.21e-02 120 chr2R:9428187-9428307 1.80e-02 74_[+2(7.64e-05)]_38 chr2R:16139045-16139165 2.10e-01 120 chrX:756801-756921 2.55e-03 14_[+3(6.64e-05)]_43_[+2(1.54e-05)]_\ 47 chrX:9103681-9103801 3.33e-02 38_[+2(7.64e-05)]_74 chr3L:13866439-13866559 8.50e-03 48_[+1(1.49e-05)]_21_[+2(4.45e-05)]_\ 35 chr2L:1987423-1987543 6.08e-04 51_[+1(1.49e-05)]_61 chr3L:6262335-6262455 6.94e-02 120 chr3R:30134235-30134355 1.98e-04 3_[+5(3.12e-05)]_39_[+1(4.62e-05)]_\ 62 chr3L:17946531-17946651 3.91e-02 65_[+1(1.49e-05)]_47 chr2L:10395972-10396092 1.92e-02 87_[+5(6.35e-05)]_25 chr2L:1143659-1143779 3.80e-04 38_[+3(6.64e-05)]_31_[+2(1.54e-05)]_\ 35 chr3R:15146894-15147014 3.15e-02 120 chr2L:487118-487238 1.05e-01 120 chr2R:21312627-21312747 1.45e-05 3_[+3(3.18e-05)]_52_[+1(6.13e-05)]_\ 49 chr2R:23355138-23355258 2.09e-02 58_[+1(3.10e-05)]_54 chr2R:7791355-7791475 8.67e-02 96_[+1(1.49e-05)]_16 chr3R:7058183-7058303 6.04e-01 120 chr3L:9358289-9358409 1.93e-02 39_[+5(6.35e-05)]_73 chrX:13752778-13752898 2.38e-03 63_[+2(1.54e-05)]_49 chr2R:20330774-20330894 3.97e-02 104_[+2(1.54e-05)]_8 chr3R:21198900-21199020 9.23e-02 120 chr3R:18798871-18798991 5.97e-01 120 chrX:2362533-2362653 1.59e-04 50_[+1(7.50e-05)]_1_[+2(1.54e-05)]_\ 53 chr3L:17595955-17596075 1.45e-03 30_[+1(1.49e-05)]_82 chr2L:8196844-8196964 7.45e-03 30_[+4(2.29e-05)]_82 chr2L:4456591-4456711 4.10e-04 57_[+2(4.45e-05)]_20_[+2(1.54e-05)]_\ 27 chr2L:2755694-2755814 6.77e-04 52_[+5(6.35e-05)]_25_[+1(7.50e-05)]_\ 27 chr3L:4409680-4409800 2.04e-01 120 chr3R:31717862-31717982 1.19e-03 72_[+5(3.12e-05)]_9_[+5(3.12e-05)]_\ 23 chr2L:5945867-5945987 6.59e-02 112_[+3(4.98e-05)] chr3L:8523331-8523451 1.57e-02 44_[+1(1.49e-05)]_68 chr3R:26259155-26259275 2.39e-04 56_[+1(3.10e-05)]_2_[+2(1.54e-05)]_\ 46 chrX:7581543-7581663 3.57e-01 120 chr3R:9631722-9631842 4.12e-01 120 chr3R:22368333-22368453 7.73e-02 120 chr3R:9873436-9873556 2.10e-02 120 chr3L:19290582-19290702 1.13e-04 17_[+1(3.10e-05)]_95 chr3L:9358496-9358616 1.25e-03 8_[+5(1.64e-05)]_104 chr2L:20898183-20898303 3.76e-04 70_[+4(6.46e-05)]_42 chr3L:17843074-17843194 1.14e-02 40_[+1(3.10e-05)]_72 chr3L:4025143-4025263 7.86e-03 22_[+1(6.13e-05)]_90 chr3L:16660040-16660160 4.98e-03 1_[+5(1.64e-05)]_111 chrX:16073175-16073295 2.99e-01 49_[+2(7.64e-05)]_63 chr2R:7791896-7792016 4.85e-02 120 chr3L:6261041-6261161 1.10e-03 12_[+5(1.64e-05)]_100 chr3L:21636810-21636930 1.90e-01 120 chr3R:9759945-9760065 4.43e-01 120 chr2R:7791556-7791676 5.08e-02 120 chrX:16308951-16309071 5.96e-01 120 chr2R:9189654-9189774 1.35e-03 13_[+1(1.49e-05)]_99 chrX:2707409-2707529 3.57e-03 34_[+2(7.64e-05)]_6_[+1(3.10e-05)]_\ 64 chr3L:12815861-12815981 3.12e-01 120 chr3L:18998104-18998224 2.59e-01 120 chr3R:30134438-30134558 7.89e-01 120 chr2L:1986381-1986501 3.14e-01 120 chrX:5427414-5427534 2.23e-02 38_[+2(1.54e-05)]_74 chr3L:17958382-17958502 3.94e-03 37_[+1(1.49e-05)]_26_[+3(3.18e-05)]_\ 20_[+3(4.98e-05)]_13 chr2R:11847056-11847176 2.29e-03 36_[+1(9.15e-05)]_2_[+2(1.54e-05)]_\ 66 chr2L:1727513-1727633 1.90e-02 101_[+5(3.12e-05)]_11 chr3L:17950261-17950381 1.51e-02 34_[+1(3.10e-05)]_78 chr2R:18810338-18810458 4.33e-01 120 chrX:16526448-16526568 4.49e-03 43_[+3(4.98e-05)]_69 chr3R:18572439-18572559 9.96e-03 44_[+1(1.49e-05)]_68 chr3L:349886-350006 5.59e-01 120 chr2R:7988442-7988562 9.14e-03 72_[+4(6.46e-05)]_40 chr2L:20431328-20431448 1.38e-01 120 chr2R:14903820-14903940 1.04e-02 107_[+4(8.56e-05)]_5 chrX:946335-946455 7.95e-01 120 chr2R:21530174-21530294 1.04e-01 120 chr3L:10663444-10663564 9.90e-01 120 chr3R:18910589-18910709 1.79e-02 51_[+1(3.10e-05)]_61 chr2R:7766512-7766632 2.46e-01 120 chr3R:10080896-10081016 5.77e-03 36_[+2(1.54e-05)]_76 chr3L:21319884-21320004 3.13e-01 120 chr3R:7492327-7492447 9.10e-02 31_[+4(2.29e-05)]_81 chr2L:21683301-21683421 9.41e-01 120 chr2R:10111284-10111404 8.56e-01 120 chr3L:19649719-19649839 8.35e-01 120 chr3L:16806492-16806612 3.96e-02 45_[+1(1.49e-05)]_67 chr2L:2372206-2372326 3.17e-01 120 chr2R:21201270-21201390 6.90e-02 76_[+3(1.66e-05)]_36 chr2L:4197596-4197716 5.89e-05 13_[+4(2.29e-05)]_84_[+5(1.64e-05)]_\ 7 chr3R:15136906-15137026 8.01e-01 120 chr3R:9759738-9759858 1.85e-01 120 chr3R:8352974-8353094 4.48e-01 120 chrX:9580710-9580830 3.15e-02 9_[+1(1.49e-05)]_29_[+1(1.49e-05)]_\ 66 chr3R:17705920-17706040 7.35e-04 55_[+1(1.49e-05)]_57 chr2L:4882709-4882829 3.12e-01 120 chr3R:26261537-26261657 2.45e-01 120 chrX:7069042-7069162 8.00e-03 3_[+1(9.15e-05)]_41_[+2(7.64e-05)]_\ 60 chrX:8377783-8377903 6.87e-02 120 chr3R:30449612-30449732 3.07e-02 11_[+2(1.54e-05)]_101 chr2L:2197816-2197936 2.70e-01 61_[+3(3.18e-05)]_51 chr3L:3903543-3903663 3.98e-02 41_[+2(7.64e-05)]_71 chr3L:12834855-12834975 6.76e-02 41_[+3(1.00e-04)]_71 chrX:3968098-3968218 1.87e-01 120 chr2L:7427538-7427658 1.90e-03 [+5(6.35e-05)]_52_[+2(4.45e-05)]_52 chr2L:10849996-10850116 4.68e-03 25_[+1(1.49e-05)]_87 chr3R:17700065-17700185 1.11e-01 10_[+1(3.10e-05)]_102 chrX:9599808-9599928 5.85e-04 22_[+3(3.18e-05)]_38_[+1(7.50e-05)]_\ 44 chr3R:16996839-16996959 5.72e-01 120 chr2R:24402401-24402521 8.55e-04 91_[+5(1.64e-05)]_8_[+5(1.64e-05)]_\ 5 chr2L:14341164-14341284 4.64e-01 120 chrX:3332573-3332693 5.86e-01 120 chr2L:4197808-4197928 2.49e-02 6_[+3(4.98e-05)]_106 chr3R:21127778-21127898 7.14e-01 120 chr3R:29113480-29113600 4.51e-01 120 chr3L:11127706-11127826 2.90e-01 120 chr3L:14783066-14783186 2.58e-02 4_[+4(2.29e-05)]_54_[+4(2.29e-05)]_\ 46 chr3R:21186781-21186901 7.20e-02 83_[+1(1.49e-05)]_29 chr3R:4281278-4281398 1.03e-01 58_[+2(9.35e-05)]_54 chr2R:17792756-17792876 3.58e-01 120 chrX:1282627-1282747 9.96e-01 120 chr3R:10888555-10888675 9.00e-03 13_[+2(3.06e-05)]_99 chrX:15297779-15297899 9.95e-01 120 chr2R:15863095-15863215 7.02e-01 120 chr3R:5633603-5633723 2.58e-01 39_[+2(7.64e-05)]_73 chr2R:22593535-22593655 3.14e-01 38_[+3(6.64e-05)]_74 chrX:10847563-10847683 7.15e-01 120 chr3R:5257423-5257543 9.09e-02 120 chr3L:17995310-17995430 8.43e-02 120 chr2L:13140963-13141083 9.58e-01 120 chr3L:11113434-11113554 2.48e-02 120 chr3R:18928402-18928522 5.63e-02 2_[+3(3.18e-05)]_16_[+3(3.18e-05)]_\ 86 chr3L:17843279-17843399 1.93e-01 40_[+1(6.13e-05)]_72 chr2R:21715655-21715775 1.39e-01 120 chr3R:5346804-5346924 3.28e-04 45_[+4(4.40e-05)]_55_[+3(3.18e-05)]_\ 4 chr3R:24047246-24047366 1.46e-03 78_[+5(1.64e-05)]_22_[+5(1.64e-05)]_\ 4 chr2R:17585224-17585344 7.85e-01 120 chr3R:26859369-26859489 3.03e-01 120 chrX:13762011-13762131 8.91e-02 120 chr3R:22522861-22522981 3.58e-01 120 chr3L:11550495-11550615 6.67e-02 120 chr2R:21532241-21532361 4.70e-02 105_[+2(7.64e-05)]_7 chr3L:8185301-8185421 1.08e-01 120 chrX:12012340-12012460 1.76e-02 85_[+3(1.66e-05)]_27 chr2L:20885907-20886027 9.82e-01 120 chrX:13994841-13994961 6.72e-03 55_[+5(1.64e-05)]_[+5(1.64e-05)]_49 chr3L:3320150-3320270 6.82e-01 120 chr2R:10617660-10617780 1.21e-01 103_[+4(6.46e-05)]_9 chr2R:17686702-17686822 3.44e-01 120 chrX:15986843-15986963 2.74e-02 120 chr3R:14058771-14058891 1.43e-01 120 chr4:660614-660734 2.98e-01 120 chr2R:7805455-7805575 1.09e-01 120 chr3R:5670445-5670565 1.91e-02 68_[+5(1.64e-05)]_44 chr2L:19493674-19493794 8.24e-02 120 chr3L:300013-300133 2.24e-01 120 chr2R:9859784-9859904 6.22e-01 120 chr3L:6263144-6263264 1.67e-02 36_[+2(7.64e-05)]_76 chr3R:24051635-24051755 1.44e-01 120 chr2R:12998553-12998673 2.76e-01 120 chrX:6986276-6986396 1.37e-01 120 chr3L:17945618-17945738 2.52e-02 120 chr2R:15999398-15999518 2.08e-01 120 chr2R:18777422-18777542 7.87e-02 86_[+1(4.62e-05)]_26 chr3L:17004964-17005084 9.28e-03 94_[+4(2.29e-05)]_18 chr3L:10862027-10862147 1.45e-02 67_[+2(3.06e-05)]_45 chr3R:30013255-30013375 3.63e-02 30_[+5(1.64e-05)]_82 chr2R:9548535-9548655 7.42e-01 120 chrX:2790279-2790399 4.58e-02 56_[+2(4.45e-05)]_56 chr2L:1657181-1657301 3.70e-02 22_[+1(9.15e-05)]_90 chr3R:10089600-10089720 7.79e-03 16_[+3(1.66e-05)]_96 chr3L:21205023-21205143 1.10e-03 65_[+2(1.54e-05)]_47 chr3L:682575-682695 1.86e-02 91_[+4(2.29e-05)]_21 chrX:5524433-5524553 1.05e-01 79_[+2(7.64e-05)]_33 chr3R:14739979-14740099 1.37e-02 7_[+5(1.64e-05)]_63_[+5(1.64e-05)]_\ 34 chr3R:28891887-28892007 2.52e-01 120 chr2R:22179700-22179820 3.94e-01 120 chr3R:18244754-18244874 8.49e-02 120 chrX:18407496-18407616 7.70e-01 120 chr2L:5944847-5944967 1.10e-01 120 chr2R:12425503-12425623 1.19e-01 120 chr2R:7457579-7457699 3.94e-02 24_[+1(1.49e-05)]_88 chr3L:12834147-12834267 1.77e-01 120 chr2R:15613740-15613860 8.94e-01 120 chr2L:2900532-2900652 1.55e-01 120 chr2L:18974081-18974201 8.75e-03 22_[+4(6.46e-05)]_9_[+1(1.49e-05)]_\ 73 chrX:19506012-19506132 1.58e-02 120 chr2R:11665532-11665652 5.14e-02 120 chr2R:10618602-10618722 2.42e-02 104_[+3(1.00e-04)]_8 chr2R:13958168-13958288 2.93e-03 96_[+1(1.49e-05)]_16 chrX:3379484-3379604 1.76e-05 11_[+3(3.18e-05)]_37_[+2(4.45e-05)]_\ 24_[+4(2.29e-05)]_24 chr2R:8603032-8603152 6.64e-01 120 chr3L:13863527-13863647 2.74e-01 120 chrX:10786753-10786873 3.48e-02 120 chr3L:3930829-3930949 4.23e-03 40_[+4(2.29e-05)]_72 chr3R:30765796-30765916 6.34e-01 120 chr3L:17563783-17563903 2.80e-02 120 chr3R:23941818-23941938 1.75e-03 2_[+3(4.98e-05)]_110 chr3L:19939205-19939325 3.06e-01 120 chr2L:21250952-21251072 7.25e-03 19_[+3(3.18e-05)]_7_[+2(4.45e-05)]_\ 78 chr3R:30022686-30022806 7.65e-02 78_[+2(7.64e-05)]_34 chr3L:22134429-22134549 4.86e-02 2_[+4(2.29e-05)]_110 chr2L:6667692-6667812 8.21e-02 67_[+2(7.64e-05)]_45 chr2L:20822112-20822232 7.97e-01 120 chr3R:12280870-12280990 8.45e-01 120 chr3L:2894831-2894951 4.17e-01 120 chrX:13278663-13278783 7.03e-03 13_[+4(2.29e-05)]_99 chr3R:8670306-8670426 1.69e-01 120 chr3R:11822387-11822507 8.75e-01 120 chr2R:7510146-7510266 2.85e-01 120 chr3R:5264062-5264182 3.24e-01 120 chr3L:21955101-21955221 8.65e-01 120 chr2L:2805037-2805157 5.02e-01 120 chr2L:14013642-14013762 7.47e-01 120 chr2R:21075789-21075909 6.75e-03 58_[+3(1.00e-04)]_54 chr3L:14554017-14554137 2.55e-01 120 chr3L:15824648-15824768 8.26e-03 67_[+4(2.29e-05)]_45 chr3R:6170865-6170985 3.73e-01 120 chr3L:7811696-7811816 4.58e-01 120 chr3L:883101-883221 7.95e-01 120 chr2L:14141331-14141451 2.75e-01 120 chr2L:7810559-7810679 4.18e-02 120 chr3L:3942337-3942457 6.66e-01 120 chr3L:18837955-18838075 2.01e-01 102_[+4(6.46e-05)]_10 chr2L:5225644-5225764 1.66e-02 46_[+3(3.18e-05)]_66 chr3R:9872355-9872475 3.46e-01 120 chr3R:21853704-21853824 7.07e-04 31_[+1(4.62e-05)]_63_[+5(1.64e-05)]_\ 10 chr3L:5923869-5923989 4.87e-02 120 chr2R:21648322-21648442 2.69e-02 91_[+5(6.35e-05)]_21 chrX:19608366-19608486 7.65e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n04.farnam.hpc.yale.internal ********************************************************************************