******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dll.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:29277546-29277666 1.0000 120 chr2R:19807130-19807250 1.0000 120 chr3R:13842148-13842268 1.0000 120 chr2R:18257522-18257642 1.0000 120 chr3L:13212650-13212770 1.0000 120 chrX:6021917-6022037 1.0000 120 chrX:6005402-6005522 1.0000 120 chr3R:10518685-10518805 1.0000 120 chr3L:1389311-1389431 1.0000 120 chr3L:6370114-6370234 1.0000 120 chrX:2085128-2085248 1.0000 120 chr2L:14302822-14302942 1.0000 120 chr3R:10474343-10474463 1.0000 120 chr2L:14415637-14415757 1.0000 120 chr3L:10709695-10709815 1.0000 120 chrX:1261008-1261128 1.0000 120 chr2L:7082363-7082483 1.0000 120 chr3L:11373529-11373649 1.0000 120 chr2R:23294419-23294539 1.0000 120 chr2R:23237949-23238069 1.0000 120 chr3L:22856229-22856349 1.0000 120 chr2L:1444849-1444969 1.0000 120 chr3L:22394518-22394638 1.0000 120 chr3R:5812426-5812546 1.0000 120 chr3R:18025657-18025777 1.0000 120 chrX:18563280-18563400 1.0000 120 chr3R:18660507-18660627 1.0000 120 chr2R:11569458-11569578 1.0000 120 chr2L:1409159-1409279 1.0000 120 chr2R:15478568-15478688 1.0000 120 chr2L:12635115-12635235 1.0000 120 chr3L:2842169-2842289 1.0000 120 chr3R:23948595-23948715 1.0000 120 chrX:9722424-9722544 1.0000 120 chr2R:24807123-24807243 1.0000 120 chr3R:14355080-14355200 1.0000 120 chr3L:1677898-1678018 1.0000 120 chr3R:8656747-8656867 1.0000 120 chr3L:10315607-10315727 1.0000 120 chr2R:17835748-17835868 1.0000 120 chr3R:19362786-19362906 1.0000 120 chr3R:4666894-4667014 1.0000 120 chr3R:13873798-13873918 1.0000 120 chr2L:500083-500203 1.0000 120 chr3R:31336116-31336236 1.0000 120 chr3R:8471811-8471931 1.0000 120 chr3R:29822677-29822797 1.0000 120 chr3R:13937281-13937401 1.0000 120 chr2L:7354708-7354828 1.0000 120 chr3L:3695105-3695225 1.0000 120 chr3L:12584038-12584158 1.0000 120 chrX:17543186-17543306 1.0000 120 chr3R:7178748-7178868 1.0000 120 chr2L:5501793-5501913 1.0000 120 chr3L:14636190-14636310 1.0000 120 chr2L:366310-366430 1.0000 120 chr2R:11516363-11516483 1.0000 120 chr3L:10977073-10977193 1.0000 120 chr2L:7269135-7269255 1.0000 120 chr2L:16438555-16438675 1.0000 120 chr2L:2185849-2185969 1.0000 120 chr2L:7870410-7870530 1.0000 120 chr2L:7356771-7356891 1.0000 120 chr3R:24994432-24994552 1.0000 120 chr2L:7907700-7907820 1.0000 120 chr2L:11986977-11987097 1.0000 120 chr2L:12594410-12594530 1.0000 120 chr3L:10992734-10992854 1.0000 120 chr3L:8955209-8955329 1.0000 120 chrX:17806063-17806183 1.0000 120 chr3L:6143323-6143443 1.0000 120 chrX:18631497-18631617 1.0000 120 chr3R:11946907-11947027 1.0000 120 chr2R:22731524-22731644 1.0000 120 chr3R:8168667-8168787 1.0000 120 chr3R:4254206-4254326 1.0000 120 chr3R:27170642-27170762 1.0000 120 chr3L:20656036-20656156 1.0000 120 chr3R:19287741-19287861 1.0000 120 chr3L:4065400-4065520 1.0000 120 chr3L:10261682-10261802 1.0000 120 chr2L:15388723-15388843 1.0000 120 chr2L:21798340-21798460 1.0000 120 chr3R:25191196-25191316 1.0000 120 chr2R:24852940-24853060 1.0000 120 chr2L:14419078-14419198 1.0000 120 chr3R:31539582-31539702 1.0000 120 chr3L:22128827-22128947 1.0000 120 chr3R:16375790-16375910 1.0000 120 chr3L:8480484-8480604 1.0000 120 chr3R:13868541-13868661 1.0000 120 chr3R:29727720-29727840 1.0000 120 chr3L:16899912-16900032 1.0000 120 chrX:10575732-10575852 1.0000 120 chr3L:11170401-11170521 1.0000 120 chr3R:23511484-23511604 1.0000 120 chr3L:1130016-1130136 1.0000 120 chr3L:13255537-13255657 1.0000 120 chr2L:1406296-1406416 1.0000 120 chrX:13542212-13542332 1.0000 120 chr3R:25011476-25011596 1.0000 120 chr3L:20163016-20163136 1.0000 120 chr3R:5100804-5100924 1.0000 120 chrX:2452489-2452609 1.0000 120 chr3R:23509667-23509787 1.0000 120 chr2L:3579361-3579481 1.0000 120 chr3L:19046908-19047028 1.0000 120 chr3L:7630427-7630547 1.0000 120 chrX:13977425-13977545 1.0000 120 chr3L:8027383-8027503 1.0000 120 chr3L:10282692-10282812 1.0000 120 chr3L:15225392-15225512 1.0000 120 chr2R:22257344-22257464 1.0000 120 chr3R:30785349-30785469 1.0000 120 chr2R:17833713-17833833 1.0000 120 chr2R:18914928-18915048 1.0000 120 chr2R:24869019-24869139 1.0000 120 chr2R:24581718-24581838 1.0000 120 chr3R:19009148-19009268 1.0000 120 chr3R:13935150-13935270 1.0000 120 chr2R:8996958-8997078 1.0000 120 chr3R:26257745-26257865 1.0000 120 chr2R:18270316-18270436 1.0000 120 chr3R:19016172-19016292 1.0000 120 chr3R:24667972-24668092 1.0000 120 chr2R:7218228-7218348 1.0000 120 chr3L:22179499-22179619 1.0000 120 chr3R:31404125-31404245 1.0000 120 chr2L:21859621-21859741 1.0000 120 chr2L:12578475-12578595 1.0000 120 chr3R:16111184-16111304 1.0000 120 chr3L:9049980-9050100 1.0000 120 chr3R:10551110-10551230 1.0000 120 chr3L:19035972-19036092 1.0000 120 chr2R:24594767-24594887 1.0000 120 chr3L:8913220-8913340 1.0000 120 chr2L:4373665-4373785 1.0000 120 chr3R:23508799-23508919 1.0000 120 chr3R:6252926-6253046 1.0000 120 chrX:19703564-19703684 1.0000 120 chr2R:23300742-23300862 1.0000 120 chr2L:13331978-13332098 1.0000 120 chr2L:5307970-5308090 1.0000 120 chr3L:16214090-16214210 1.0000 120 chr2R:21562725-21562845 1.0000 120 chr2L:5414909-5415029 1.0000 120 chr2R:9828685-9828805 1.0000 120 chr2R:24846725-24846845 1.0000 120 chr3R:6244126-6244246 1.0000 120 chrX:18677788-18677908 1.0000 120 chrX:17779663-17779783 1.0000 120 chr3R:22142631-22142751 1.0000 120 chrX:4381289-4381409 1.0000 120 chr3R:30386306-30386426 1.0000 120 chr3L:1458483-1458603 1.0000 120 chr3R:29200748-29200868 1.0000 120 chr3L:14754322-14754442 1.0000 120 chr3R:16945965-16946085 1.0000 120 chr2R:24901478-24901598 1.0000 120 chr3R:23513904-23514024 1.0000 120 chr2R:23675247-23675367 1.0000 120 chr3R:24143517-24143637 1.0000 120 chr3R:16113301-16113421 1.0000 120 chr2L:1396969-1397089 1.0000 120 chr2L:438511-438631 1.0000 120 chr3R:15632901-15633021 1.0000 120 chr2L:11052077-11052197 1.0000 120 chr3L:21128623-21128743 1.0000 120 chr3L:13196413-13196533 1.0000 120 chr3L:4721705-4721825 1.0000 120 chr2R:18587426-18587546 1.0000 120 chr3L:8715344-8715464 1.0000 120 chrX:13542910-13543030 1.0000 120 chr2R:15865718-15865838 1.0000 120 chr2R:13473606-13473726 1.0000 120 chr3R:31459301-31459421 1.0000 120 chr3L:649148-649268 1.0000 120 chr3L:1899673-1899793 1.0000 120 chr3L:11405433-11405553 1.0000 120 chr2L:11023519-11023639 1.0000 120 chr2L:20781910-20782030 1.0000 120 chr3L:11390543-11390663 1.0000 120 chr3R:18462602-18462722 1.0000 120 chr2L:18002182-18002302 1.0000 120 chr2L:9605655-9605775 1.0000 120 chr3L:1679140-1679260 1.0000 120 chr2R:15226116-15226236 1.0000 120 chr2L:5374706-5374826 1.0000 120 chr2R:21579210-21579330 1.0000 120 chrX:14118267-14118387 1.0000 120 chr2R:7414032-7414152 1.0000 120 chr3R:19283264-19283384 1.0000 120 chr3R:12690285-12690405 1.0000 120 chr3L:16623964-16624084 1.0000 120 chr2R:19225288-19225408 1.0000 120 chr3R:29096890-29097010 1.0000 120 chr3R:25758853-25758973 1.0000 120 chr3R:15448904-15449024 1.0000 120 chr3R:11861114-11861234 1.0000 120 chr3R:13790282-13790402 1.0000 120 chr3L:22158216-22158336 1.0000 120 chr2R:24571247-24571367 1.0000 120 chr3L:13499404-13499524 1.0000 120 chr2R:11268525-11268645 1.0000 120 chr3L:389984-390104 1.0000 120 chr3R:29095677-29095797 1.0000 120 chr3L:362929-363049 1.0000 120 chr3R:4883686-4883806 1.0000 120 chr3R:22746877-22746997 1.0000 120 chr2R:23055156-23055276 1.0000 120 chr2L:16659353-16659473 1.0000 120 chrX:17825252-17825372 1.0000 120 chr2R:6514319-6514439 1.0000 120 chr2R:9044034-9044154 1.0000 120 chr3R:16091125-16091245 1.0000 120 chr2R:23241784-23241904 1.0000 120 chr3L:6997581-6997701 1.0000 120 chr3R:23912619-23912739 1.0000 120 chr2R:6541736-6541856 1.0000 120 chr2L:10791816-10791936 1.0000 120 chr3R:30786082-30786202 1.0000 120 chr3R:15589123-15589243 1.0000 120 chrX:19751364-19751484 1.0000 120 chr2R:15990251-15990371 1.0000 120 chr3R:16245582-16245702 1.0000 120 chr3R:8157899-8158019 1.0000 120 chr3R:24870295-24870415 1.0000 120 chr2R:24585332-24585452 1.0000 120 chr2R:20026343-20026463 1.0000 120 chr3L:10976210-10976330 1.0000 120 chr3R:14891687-14891807 1.0000 120 chr3R:24205741-24205861 1.0000 120 chr3R:22942843-22942963 1.0000 120 chr3R:13786085-13786205 1.0000 120 chr2L:423605-423725 1.0000 120 chr3R:23914816-23914936 1.0000 120 chr3R:6229745-6229865 1.0000 120 chr2R:20043641-20043761 1.0000 120 chr3L:384904-385024 1.0000 120 chrX:18539280-18539400 1.0000 120 chr3R:12227184-12227304 1.0000 120 chr2R:24335453-24335573 1.0000 120 chr3R:15483351-15483471 1.0000 120 chr2L:15413264-15413384 1.0000 120 chr3L:22851344-22851464 1.0000 120 chr3L:8388706-8388826 1.0000 120 chr3R:23497024-23497144 1.0000 120 chr3L:676555-676675 1.0000 120 chr3R:5097194-5097314 1.0000 120 chr3R:16829615-16829735 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Dll/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dll.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.235 C 0.261 G 0.271 T 0.233 Background letter frequencies (from file dataset with add-one prior applied): A 0.235 C 0.261 G 0.27 T 0.233 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YDYAATTW MEME-1 width = 8 sites = 76 llr = 571 E-value = 1.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 23:aa::5 pos.-specific C 314::::: probability G :2:::::2 matrix T 546::aa3 bits 2.1 **** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.0 ***** (10.8 bits) 0.8 ***** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel TTTAATTA consensus CAC T sequence AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:31539582-31539702 77 8.91e-06 GGTAATCGGC TTTAATTA ACGCTGCGTT chr2R:11569458-11569578 39 1.79e-05 GACTCCTCCT TATAATTA CAGCTGCGTC chr3R:18025657-18025777 46 1.79e-05 CGATATGGGG TATAATTA AAATGATCGC chr3R:10474343-10474463 39 1.79e-05 AAGTAATTAC TATAATTA CCTTCAAGGT chr3R:29277546-29277666 9 1.79e-05 GGCGTAAT TATAATTa tgagatggca chr3R:23497024-23497144 110 3.67e-05 TTTTGAGGTG TTCAATTA AAG chr2R:23675247-23675367 11 3.67e-05 TGCAAATTAA TTCAATTA AATGGAAGCG chr3L:1458483-1458603 98 3.67e-05 GAGTGCAGCT TTCAATTA GCCGCCTGCT chr3L:19035972-19036092 75 5.70e-05 CCGTGTGCAC CTTAATTA TATGGCCGCC chr2R:18270316-18270436 96 5.70e-05 ACTGCGAAAA CTTAATTA ACTCGTCGCT chr2L:7354708-7354828 76 5.70e-05 AAGGCAACAC CTTAATTA ATGTTATTAA chr3L:1677898-1678018 46 5.70e-05 TCGCTGTTTA TGTAATTA CCGCCGGCCG chr3L:10709695-10709815 20 5.70e-05 GGCCGCAAAT TGTAATTA CCACAACGCA chrX:6021917-6022037 42 5.70e-05 TTATAAAGAC TGTAATTA GGGCTTCATT chr3R:12227184-12227304 66 8.50e-05 ACAGGCGCGA ATTAATTA TGCACACCTC chr3R:24205741-24205861 80 8.50e-05 GCCGCACTAT TATAATTT TTGGCACTAA chr2R:20026343-20026463 105 8.50e-05 CAGCAGATCC ATTAATTA GCCAAAGT chr2L:18002182-18002302 1 8.50e-05 . TACAATTA TCTCGTTGTG chr3R:22142631-22142751 113 8.50e-05 ATGTTTTCTT ATTAATTA chr3R:8168667-8168787 36 8.50e-05 TCTGGCAGTG TATAATTT AGCAGACACC chr2L:1444849-1444969 62 8.50e-05 AGGCATAATT TATAATTT AATGAGTTAA chr2L:1406296-1406416 34 9.51e-05 GCCAAGAGCG CATAATTA TACCGAGCGG chr2R:15478568-15478688 55 9.51e-05 GCTCACTCGT CATAATTA CGCCCGGCTG chr2L:1409159-1409279 23 9.51e-05 AAACGAACAA CATAATTA CCGTTAAGAA chrX:18563280-18563400 39 9.51e-05 CATGCATATG CATAATTA TAGAGCGCCT chr3L:4721705-4721825 62 1.04e-04 CGCAAAATTA AATAATTA AACCAACGCC chrX:9722424-9722544 11 1.04e-04 aataaataac aataatTA AGTGCAATga chrX:14118267-14118387 64 1.14e-04 AGTTGAAAGC TTCAATTT ACCACCCATT chr3R:27170642-27170762 110 1.14e-04 GTAATTGGCT TTCAATTT GCT chr2R:22731524-22731644 65 1.14e-04 TAGCCAAACA TTCAATTT TGATGGGTTC chr2L:438511-438631 47 1.57e-04 AATGGTGTTG CTTAATTT TGTGTGGAAT chr3R:19016172-19016292 101 1.57e-04 AGGGGCAGAC TGCAATTA TCATCCGGAC chr3L:19046908-19047028 53 1.57e-04 GATCCATCGT CTTAATTT CAGGAGGAGA chrX:13542212-13542332 70 1.57e-04 GCACATTAAA TGCAATTA AGAAATGATT chr3R:4254206-4254326 32 1.57e-04 CGGACGCTTG TGCAATTA CACTTTTAAT chr2L:2185849-2185969 47 1.57e-04 GTTGGAGGAA CTCAATTA CAGTGCGCCG chr2L:5501793-5501913 64 1.57e-04 GATGCGTTGA TGCAATTA CACCATAATA chr3L:11405433-11405553 31 1.97e-04 CCGGCATGCC ATCAATTA AAGTAATTTA chr3R:16113301-16113421 61 1.97e-04 TTAAAGTGGC ATCAATTA TTGCGAACCC chrX:17779663-17779783 107 1.97e-04 TTTATTGCTT ATTAATTT TTCAGT chr3R:24870295-24870415 27 2.39e-04 TTTTGTCATT TTTAATTG GACTGTGGTC chr3R:8157899-8158019 36 2.39e-04 ATCGTTAATT TTTAATTG ATCTGCGCGG chr3L:389984-390104 105 2.39e-04 AGGTGATTAT AGTAATTA TGCGTTCT chr3L:22158216-22158336 88 2.39e-04 CAGTGCAAAG TTTAATTG AATCGCGGGG chr2L:16438555-16438675 44 2.39e-04 AGACATTGTG CATAATTT CGCGTACGTT chr3R:19362786-19362906 83 2.39e-04 CATAACACCT CATAATTT GCACTACACG chr3L:10315607-10315727 66 2.39e-04 ACCGTTTGCT TTTAATTG GCCATCGAAC chr3L:2842169-2842289 36 2.39e-04 GCCATCGCCC CATAATTT ACTGCAATTT chrX:1261008-1261128 70 2.39e-04 CCGCTGAAAG TTTAATTG AACCCTTGGT chr3L:1389311-1389431 78 2.39e-04 CGGGGCCCAC CATAATTT GCTTAATTCG chr3R:13842148-13842268 46 2.39e-04 CCAACTACAA CATAATTT CCAGACGTCG chr3L:13255537-13255657 105 2.59e-04 TGCAGTCCAC AACAATTA CCGGCCGA chr3L:3695105-3695225 80 2.59e-04 CCTGGATTAC AATAATTT AACATCATCA chr3L:22856229-22856349 20 2.59e-04 TAGTGCAACC AATAATTT GAGGCATCGT chr2R:18587426-18587546 73 2.91e-04 AGGCGCCAGT CTCAATTT CGATTCCCTC chr3R:23513904-23514024 52 2.91e-04 CCCAGGGACA TGCAATTT GGGTGTAGTC chr3L:15225392-15225512 53 2.91e-04 GACGGCAAAT TGCAATTT TCAGTGCCCG chr3R:23509667-23509787 108 2.91e-04 GCCCAGGGCA TGCAATTT GCATC chr2L:15413264-15413384 2 3.26e-04 A ATCAATTT TATGACTTTG chr3L:22179499-22179619 93 3.80e-04 TTGGACTCAC TCTAATTA GTCAATTTTT chr2R:7218228-7218348 90 3.80e-04 TAATGGCCAA TTCAATTG TGGCTGGAAG chr3R:14355080-14355200 4 3.80e-04 GCG AGCAATTA ACGCTGAATT chr3L:11373529-11373649 69 3.80e-04 GTGCAACGGA CACAATTT TCTCAATGCA chrX:6005402-6005522 38 3.80e-04 GCTAAGAGGC TCTAATTA CAGCTTGTTA chr3R:16245582-16245702 89 4.14e-04 ACTTAATTCA CTTAATTG agcaggcagc chr3L:8715344-8715464 17 4.14e-04 GGGCAATGCA AACAATTT GCCCCACAGA chr3R:16945965-16946085 88 4.14e-04 TAGTGATGTG TGTAATTG GCCAGCCAAC chr3L:12584038-12584158 74 4.36e-04 CATTTTGCAT ATTAATTG CCAAGTGAGT chr2L:423605-423725 54 5.03e-04 cagATTCGGT AGCAATTT GCAACGCATT chr3R:6252926-6253046 5 5.03e-04 TGAA AGCAATTT CACTGTCAAC chr2L:14302822-14302942 47 5.03e-04 AAGGCGGTAA TCCAATTA AACGGCTCCG chr2R:20043641-20043761 91 5.41e-04 TGCATGTGTG TGCAATTG ATTTTTGATG chr3R:15589123-15589243 35 5.41e-04 TGGCGCGGCG CCTAATTA CAGGGTGCCT chr3R:15632901-15633021 77 5.41e-04 TTAAACTGGC TGCAATTG TTGCCATGCG chr3L:22128827-22128947 102 5.41e-04 CCTCGACGCC CCTAATTA TATGCAACAG chr2L:500083-500203 23 5.75e-04 TTCAGTTTAG CGTAATTG CCGCCGTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31539582-31539702 8.9e-06 76_[+1]_36 chr2R:11569458-11569578 1.8e-05 38_[+1]_74 chr3R:18025657-18025777 1.8e-05 45_[+1]_67 chr3R:10474343-10474463 1.8e-05 38_[+1]_74 chr3R:29277546-29277666 1.8e-05 8_[+1]_104 chr3R:23497024-23497144 3.7e-05 109_[+1]_3 chr2R:23675247-23675367 3.7e-05 10_[+1]_102 chr3L:1458483-1458603 3.7e-05 97_[+1]_15 chr3L:19035972-19036092 5.7e-05 74_[+1]_38 chr2R:18270316-18270436 5.7e-05 95_[+1]_17 chr2L:7354708-7354828 5.7e-05 75_[+1]_37 chr3L:1677898-1678018 5.7e-05 45_[+1]_67 chr3L:10709695-10709815 5.7e-05 19_[+1]_93 chrX:6021917-6022037 5.7e-05 41_[+1]_71 chr3R:12227184-12227304 8.5e-05 65_[+1]_47 chr3R:24205741-24205861 8.5e-05 79_[+1]_33 chr2R:20026343-20026463 8.5e-05 104_[+1]_8 chr2L:18002182-18002302 8.5e-05 [+1]_112 chr3R:22142631-22142751 8.5e-05 112_[+1] chr3R:8168667-8168787 8.5e-05 35_[+1]_77 chr2L:1444849-1444969 8.5e-05 61_[+1]_51 chr2L:1406296-1406416 9.5e-05 33_[+1]_79 chr2R:15478568-15478688 9.5e-05 54_[+1]_58 chr2L:1409159-1409279 9.5e-05 22_[+1]_90 chrX:18563280-18563400 9.5e-05 38_[+1]_74 chr3L:4721705-4721825 0.0001 61_[+1]_51 chrX:9722424-9722544 0.0001 10_[+1]_102 chrX:14118267-14118387 0.00011 63_[+1]_49 chr3R:27170642-27170762 0.00011 109_[+1]_3 chr2R:22731524-22731644 0.00011 64_[+1]_48 chr2L:438511-438631 0.00016 46_[+1]_66 chr3R:19016172-19016292 0.00016 100_[+1]_12 chr3L:19046908-19047028 0.00016 52_[+1]_60 chrX:13542212-13542332 0.00016 69_[+1]_43 chr3R:4254206-4254326 0.00016 31_[+1]_81 chr2L:2185849-2185969 0.00016 46_[+1]_66 chr2L:5501793-5501913 0.00016 63_[+1]_49 chr3L:11405433-11405553 0.0002 30_[+1]_82 chr3R:16113301-16113421 0.0002 60_[+1]_52 chrX:17779663-17779783 0.0002 106_[+1]_6 chr3R:24870295-24870415 0.00024 26_[+1]_86 chr3R:8157899-8158019 0.00024 35_[+1]_77 chr3L:389984-390104 0.00024 104_[+1]_8 chr3L:22158216-22158336 0.00024 87_[+1]_25 chr2L:16438555-16438675 0.00024 43_[+1]_69 chr3R:19362786-19362906 0.00024 82_[+1]_30 chr3L:10315607-10315727 0.00024 65_[+1]_47 chr3L:2842169-2842289 0.00024 35_[+1]_77 chrX:1261008-1261128 0.00024 69_[+1]_43 chr3L:1389311-1389431 0.00024 77_[+1]_35 chr3R:13842148-13842268 0.00024 45_[+1]_67 chr3L:13255537-13255657 0.00026 104_[+1]_8 chr3L:3695105-3695225 0.00026 79_[+1]_33 chr3L:22856229-22856349 0.00026 19_[+1]_93 chr2R:18587426-18587546 0.00029 72_[+1]_40 chr3R:23513904-23514024 0.00029 51_[+1]_61 chr3L:15225392-15225512 0.00029 52_[+1]_60 chr3R:23509667-23509787 0.00029 107_[+1]_5 chr2L:15413264-15413384 0.00033 1_[+1]_111 chr3L:22179499-22179619 0.00038 92_[+1]_20 chr2R:7218228-7218348 0.00038 89_[+1]_23 chr3R:14355080-14355200 0.00038 3_[+1]_109 chr3L:11373529-11373649 0.00038 68_[+1]_44 chrX:6005402-6005522 0.00038 37_[+1]_75 chr3R:16245582-16245702 0.00041 88_[+1]_24 chr3L:8715344-8715464 0.00041 16_[+1]_96 chr3R:16945965-16946085 0.00041 87_[+1]_25 chr3L:12584038-12584158 0.00044 73_[+1]_39 chr2L:423605-423725 0.0005 53_[+1]_59 chr3R:6252926-6253046 0.0005 4_[+1]_108 chr2L:14302822-14302942 0.0005 46_[+1]_66 chr2R:20043641-20043761 0.00054 90_[+1]_22 chr3R:15589123-15589243 0.00054 34_[+1]_78 chr3R:15632901-15633021 0.00054 76_[+1]_36 chr3L:22128827-22128947 0.00054 101_[+1]_11 chr2L:500083-500203 0.00058 22_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YDYAATTW width=8 seqs=76 chr3R:31539582-31539702 ( 77) TTTAATTA 1 chr2R:11569458-11569578 ( 39) TATAATTA 1 chr3R:18025657-18025777 ( 46) TATAATTA 1 chr3R:10474343-10474463 ( 39) TATAATTA 1 chr3R:29277546-29277666 ( 9) TATAATTA 1 chr3R:23497024-23497144 ( 110) TTCAATTA 1 chr2R:23675247-23675367 ( 11) TTCAATTA 1 chr3L:1458483-1458603 ( 98) TTCAATTA 1 chr3L:19035972-19036092 ( 75) CTTAATTA 1 chr2R:18270316-18270436 ( 96) CTTAATTA 1 chr2L:7354708-7354828 ( 76) CTTAATTA 1 chr3L:1677898-1678018 ( 46) TGTAATTA 1 chr3L:10709695-10709815 ( 20) TGTAATTA 1 chrX:6021917-6022037 ( 42) TGTAATTA 1 chr3R:12227184-12227304 ( 66) ATTAATTA 1 chr3R:24205741-24205861 ( 80) TATAATTT 1 chr2R:20026343-20026463 ( 105) ATTAATTA 1 chr2L:18002182-18002302 ( 1) TACAATTA 1 chr3R:22142631-22142751 ( 113) ATTAATTA 1 chr3R:8168667-8168787 ( 36) TATAATTT 1 chr2L:1444849-1444969 ( 62) TATAATTT 1 chr2L:1406296-1406416 ( 34) CATAATTA 1 chr2R:15478568-15478688 ( 55) CATAATTA 1 chr2L:1409159-1409279 ( 23) CATAATTA 1 chrX:18563280-18563400 ( 39) CATAATTA 1 chr3L:4721705-4721825 ( 62) AATAATTA 1 chrX:9722424-9722544 ( 11) AATAATTA 1 chrX:14118267-14118387 ( 64) TTCAATTT 1 chr3R:27170642-27170762 ( 110) TTCAATTT 1 chr2R:22731524-22731644 ( 65) TTCAATTT 1 chr2L:438511-438631 ( 47) CTTAATTT 1 chr3R:19016172-19016292 ( 101) TGCAATTA 1 chr3L:19046908-19047028 ( 53) CTTAATTT 1 chrX:13542212-13542332 ( 70) TGCAATTA 1 chr3R:4254206-4254326 ( 32) TGCAATTA 1 chr2L:2185849-2185969 ( 47) CTCAATTA 1 chr2L:5501793-5501913 ( 64) TGCAATTA 1 chr3L:11405433-11405553 ( 31) ATCAATTA 1 chr3R:16113301-16113421 ( 61) ATCAATTA 1 chrX:17779663-17779783 ( 107) ATTAATTT 1 chr3R:24870295-24870415 ( 27) TTTAATTG 1 chr3R:8157899-8158019 ( 36) TTTAATTG 1 chr3L:389984-390104 ( 105) AGTAATTA 1 chr3L:22158216-22158336 ( 88) TTTAATTG 1 chr2L:16438555-16438675 ( 44) CATAATTT 1 chr3R:19362786-19362906 ( 83) CATAATTT 1 chr3L:10315607-10315727 ( 66) TTTAATTG 1 chr3L:2842169-2842289 ( 36) CATAATTT 1 chrX:1261008-1261128 ( 70) TTTAATTG 1 chr3L:1389311-1389431 ( 78) CATAATTT 1 chr3R:13842148-13842268 ( 46) CATAATTT 1 chr3L:13255537-13255657 ( 105) AACAATTA 1 chr3L:3695105-3695225 ( 80) AATAATTT 1 chr3L:22856229-22856349 ( 20) AATAATTT 1 chr2R:18587426-18587546 ( 73) CTCAATTT 1 chr3R:23513904-23514024 ( 52) TGCAATTT 1 chr3L:15225392-15225512 ( 53) TGCAATTT 1 chr3R:23509667-23509787 ( 108) TGCAATTT 1 chr2L:15413264-15413384 ( 2) ATCAATTT 1 chr3L:22179499-22179619 ( 93) TCTAATTA 1 chr2R:7218228-7218348 ( 90) TTCAATTG 1 chr3R:14355080-14355200 ( 4) AGCAATTA 1 chr3L:11373529-11373649 ( 69) CACAATTT 1 chrX:6005402-6005522 ( 38) TCTAATTA 1 chr3R:16245582-16245702 ( 89) CTTAATTG 1 chr3L:8715344-8715464 ( 17) AACAATTT 1 chr3R:16945965-16946085 ( 88) TGTAATTG 1 chr3L:12584038-12584158 ( 74) ATTAATTG 1 chr2L:423605-423725 ( 54) AGCAATTT 1 chr3R:6252926-6253046 ( 5) AGCAATTT 1 chr2L:14302822-14302942 ( 47) TCCAATTA 1 chr2R:20043641-20043761 ( 91) TGCAATTG 1 chr3R:15589123-15589243 ( 35) CCTAATTA 1 chr3R:15632901-15633021 ( 77) TGCAATTG 1 chr3L:22128827-22128947 ( 102) CCTAATTA 1 chr2L:500083-500203 ( 23) CGTAATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.43338 E= 1.4e-007 1 8 -1289 106 43 -199 -19 71 -1289 55 -1289 141 209 -1289 -1289 -1289 209 -1289 -1289 -1289 -1289 -1289 -1289 210 -1289 -1289 -1289 210 113 -1289 -78 49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 1.4e-007 0.236842 0.276316 0.000000 0.486842 0.315789 0.065789 0.236842 0.381579 0.000000 0.381579 0.000000 0.618421 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.513158 0.000000 0.157895 0.328947 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YDYAATTW MEME-1 regular expression -------------------------------------------------------------------------------- [TCA][TAG][TC]AATT[AT] -------------------------------------------------------------------------------- Time 7.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCCAA MEME-2 width = 8 sites = 19 llr = 187 E-value = 5.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:::::a9 pos.-specific C 2:::aa:: probability G ::aa:::: matrix T 6a:::::1 bits 2.1 * * 1.9 ****** 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.0 ******* (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCCAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23497024-23497144 7 1.49e-05 CCTCAT TTGGCCAA CATCGCTGGC chr2R:24585332-24585452 4 1.49e-05 CAA TTGGCCAA CAGCAAATTA chrX:19751364-19751484 91 1.49e-05 TCTAAGCAAA TTGGCCAA CAACCAGAGC chr3R:13790282-13790402 71 1.49e-05 CTTGGTTGCA TTGGCCAA GATGAGgctg chr3L:13196413-13196533 54 1.49e-05 AATGCAGTTG TTGGCCAA GAAAAAGCCT chr3R:16113301-16113421 42 1.49e-05 CCATCAACAT TTGGCCAA TTTAAAGTGG chr3R:16945965-16946085 70 1.49e-05 TAGAAAAGTC TTGGCCAA TAGTGATGTG chr2L:13331978-13332098 113 1.49e-05 AATGAAAAGC TTGGCCAA chr3R:10551110-10551230 45 1.49e-05 GTTCGGGGAG TTGGCCAA GAAAAaaggg chr2R:24581718-24581838 91 1.49e-05 TTTACCACTC TTGGCCAA CTCTTAAATG chr3R:11861114-11861234 84 3.16e-05 GGAAAGTATC CTGGCCAA GCTCGACTCC chr3L:1899673-1899793 57 3.16e-05 TGCTCCGGCA CTGGCCAA TTAGCCGAAA chr3R:23511484-23511604 49 3.16e-05 TAACCCCTCC CTGGCCAA TTGCGACATA chr3R:31539582-31539702 99 3.16e-05 TGCGTTTTAT CTGGCCAA AAAGGTTTTT chr2R:7218228-7218348 82 4.66e-05 TTTGACTTTA ATGGCCAA TTCAATTGTG chr2R:24869019-24869139 76 4.66e-05 AGATCGGGAC ATGGCCAA GGGTATGGCT chr3R:16375790-16375910 59 4.66e-05 AGCGGACACA ATGGCCAA TTGCTGGTAT chr2R:18914928-18915048 89 6.13e-05 CCTGTGTATG TTGGCCAT GTGTGCGTGC chr3L:2842169-2842289 23 6.13e-05 ACGCCCCCTT TTGGCCAT CGCCCCATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23497024-23497144 1.5e-05 6_[+2]_106 chr2R:24585332-24585452 1.5e-05 3_[+2]_109 chrX:19751364-19751484 1.5e-05 90_[+2]_22 chr3R:13790282-13790402 1.5e-05 70_[+2]_42 chr3L:13196413-13196533 1.5e-05 53_[+2]_59 chr3R:16113301-16113421 1.5e-05 41_[+2]_71 chr3R:16945965-16946085 1.5e-05 69_[+2]_43 chr2L:13331978-13332098 1.5e-05 112_[+2] chr3R:10551110-10551230 1.5e-05 44_[+2]_68 chr2R:24581718-24581838 1.5e-05 90_[+2]_22 chr3R:11861114-11861234 3.2e-05 83_[+2]_29 chr3L:1899673-1899793 3.2e-05 56_[+2]_56 chr3R:23511484-23511604 3.2e-05 48_[+2]_64 chr3R:31539582-31539702 3.2e-05 98_[+2]_14 chr2R:7218228-7218348 4.7e-05 81_[+2]_31 chr2R:24869019-24869139 4.7e-05 75_[+2]_37 chr3R:16375790-16375910 4.7e-05 58_[+2]_54 chr2R:18914928-18915048 6.1e-05 88_[+2]_24 chr3L:2842169-2842289 6.1e-05 22_[+2]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCCAA width=8 seqs=19 chr3R:23497024-23497144 ( 7) TTGGCCAA 1 chr2R:24585332-24585452 ( 4) TTGGCCAA 1 chrX:19751364-19751484 ( 91) TTGGCCAA 1 chr3R:13790282-13790402 ( 71) TTGGCCAA 1 chr3L:13196413-13196533 ( 54) TTGGCCAA 1 chr3R:16113301-16113421 ( 42) TTGGCCAA 1 chr3R:16945965-16946085 ( 70) TTGGCCAA 1 chr2L:13331978-13332098 ( 113) TTGGCCAA 1 chr3R:10551110-10551230 ( 45) TTGGCCAA 1 chr2R:24581718-24581838 ( 91) TTGGCCAA 1 chr3R:11861114-11861234 ( 84) CTGGCCAA 1 chr3L:1899673-1899793 ( 57) CTGGCCAA 1 chr3R:23511484-23511604 ( 49) CTGGCCAA 1 chr3R:31539582-31539702 ( 99) CTGGCCAA 1 chr2R:7218228-7218348 ( 82) ATGGCCAA 1 chr2R:24869019-24869139 ( 76) ATGGCCAA 1 chr3R:16375790-16375910 ( 59) ATGGCCAA 1 chr2R:18914928-18915048 ( 89) TTGGCCAT 1 chr3L:2842169-2842289 ( 23) TTGGCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 5.9e-001 -57 -31 -1089 144 -1089 -1089 -1089 210 -1089 -1089 189 -1089 -1089 -1089 189 -1089 -1089 194 -1089 -1089 -1089 194 -1089 -1089 209 -1089 -1089 -1089 193 -1089 -1089 -115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.9e-001 0.157895 0.210526 0.000000 0.631579 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.105263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAA MEME-2 regular expression -------------------------------------------------------------------------------- [TC]TGGCCAA -------------------------------------------------------------------------------- Time 13.38 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCATCAT MEME-3 width = 8 sites = 11 llr = 113 E-value = 7.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8::a1:9: pos.-specific C ::a::a:: probability G 2::::::: matrix T :a::9:1a bits 2.1 * * * 1.9 *** * * 1.7 ******* 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (14.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATCATCAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6514319-6514439 70 1.12e-05 GGCCCTCGTA ATCATCAT AATCAAGCGG chr3L:13499404-13499524 40 1.12e-05 catcatcccc atcatcat cCGCTTgagc chr2L:11023519-11023639 79 1.12e-05 AGTGGGTATA ATCATCAT CAGCTTTGAT chr3L:14636190-14636310 113 1.12e-05 CCGGCTCGCC ATCATCAT chr3L:3695105-3695225 91 1.12e-05 ATAATTTAAC ATCATCAT AATAAAACAA chr3L:6370114-6370234 84 1.12e-05 GCTGGAATTC ATCATCAT GCGAATTATC chr2R:19807130-19807250 107 1.12e-05 ACGCGTAATA ATCATCAT AATCAA chr3L:10282692-10282812 16 2.40e-05 GTCCAGAGCT GTCATCAT GGAtgtcgtt chr2L:366310-366430 70 2.40e-05 AATTTGGCTT GTCATCAT TATCGTGTGT chr3R:16113301-16113421 34 4.64e-05 CAGCCGGGCC ATCAACAT TTGGCCAATT chr3L:22394518-22394638 53 4.64e-05 GTGCTTCCCC ATCATCTT TTCTTTCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6514319-6514439 1.1e-05 69_[+3]_43 chr3L:13499404-13499524 1.1e-05 39_[+3]_73 chr2L:11023519-11023639 1.1e-05 78_[+3]_34 chr3L:14636190-14636310 1.1e-05 112_[+3] chr3L:3695105-3695225 1.1e-05 90_[+3]_22 chr3L:6370114-6370234 1.1e-05 83_[+3]_29 chr2R:19807130-19807250 1.1e-05 106_[+3]_6 chr3L:10282692-10282812 2.4e-05 15_[+3]_97 chr2L:366310-366430 2.4e-05 69_[+3]_43 chr3R:16113301-16113421 4.6e-05 33_[+3]_79 chr3L:22394518-22394638 4.6e-05 52_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCATCAT width=8 seqs=11 chr2R:6514319-6514439 ( 70) ATCATCAT 1 chr3L:13499404-13499524 ( 40) ATCATCAT 1 chr2L:11023519-11023639 ( 79) ATCATCAT 1 chr3L:14636190-14636310 ( 113) ATCATCAT 1 chr3L:3695105-3695225 ( 91) ATCATCAT 1 chr3L:6370114-6370234 ( 84) ATCATCAT 1 chr2R:19807130-19807250 ( 107) ATCATCAT 1 chr3L:10282692-10282812 ( 16) GTCATCAT 1 chr2L:366310-366430 ( 70) GTCATCAT 1 chr3R:16113301-16113421 ( 34) ATCAACAT 1 chr3L:22394518-22394638 ( 53) ATCATCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 7.6e+003 180 -1010 -57 -1010 -1010 -1010 -1010 210 -1010 194 -1010 -1010 209 -1010 -1010 -1010 -137 -1010 -1010 196 -1010 194 -1010 -1010 195 -1010 -1010 -136 -1010 -1010 -1010 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.6e+003 0.818182 0.000000 0.181818 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCATCAT MEME-3 regular expression -------------------------------------------------------------------------------- ATCATCAT -------------------------------------------------------------------------------- Time 19.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTGTTG MEME-4 width = 8 sites = 18 llr = 168 E-value = 4.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::11:: pos.-specific C :::::::: probability G :3::7::9 matrix T a7aa29a1 bits 2.1 * ** * 1.9 * ** * 1.7 * ** *** 1.5 * ** *** Relative 1.3 **** *** Entropy 1.0 **** *** (13.5 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6541736-6541856 24 1.17e-05 AAGCGCTTCG TTTTGTTG CAGGTGTGTG chr3R:24143517-24143637 52 1.17e-05 TACTGCCCAA TTTTGTTG CAAATTTTTC chr3L:8913220-8913340 14 1.17e-05 GACCATCCGC TTTTGTTG ATACGCACAC chrX:10575732-10575852 47 1.17e-05 TATGGGTTAT TTTTGTTG CTGCCGATCG chrX:1261008-1261128 10 1.17e-05 TAACAGCAA TTTTGTTG CTCTGCTGGC chr3R:18462602-18462722 35 2.17e-05 TTTCGTCTTT TTTTTTTG GTGTTTTTTT chr2L:14419078-14419198 52 2.17e-05 CCCACACATT TTTTTTTG CCGCATTCGG chrX:9722424-9722544 109 2.17e-05 ACGCAGCTTT TTTTTTTG CACC chr3R:23914816-23914936 11 3.52e-05 GACATAAATG TGTTGTTG TCGCATGGAC chr2R:8996958-8997078 105 3.52e-05 ctgctgtggt tgttgttg tggtggtg chr2L:3579361-3579481 65 3.52e-05 gtggagttgc tgttgttg ctgctgggcg chr3R:10518685-10518805 107 3.52e-05 CTGTTGCCGT TGTTGTTG CAGCCG chr2L:5374706-5374826 72 4.54e-05 GTATTAGCGC TTTTATTG GTGAAATGCA chrX:17779663-17779783 96 4.54e-05 TTCATGGCAA TTTTATTG CTTATTAATT chr3R:16245582-16245702 47 5.71e-05 TTTGGCTTGG TGTTTTTG GGGGGGTGCA chr2R:20043641-20043761 101 6.88e-05 TGCAATTGAT TTTTGATG GCCGATAAAT chr3R:22746877-22746997 24 6.88e-05 TTCTCTTGGA TTTTGATG CGTTCGCCGA chr2R:24335453-24335573 15 7.89e-05 CGGCTCGTAG TTTTGTTT ATTTAAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6541736-6541856 1.2e-05 23_[+4]_89 chr3R:24143517-24143637 1.2e-05 51_[+4]_61 chr3L:8913220-8913340 1.2e-05 13_[+4]_99 chrX:10575732-10575852 1.2e-05 46_[+4]_66 chrX:1261008-1261128 1.2e-05 9_[+4]_103 chr3R:18462602-18462722 2.2e-05 34_[+4]_78 chr2L:14419078-14419198 2.2e-05 51_[+4]_61 chrX:9722424-9722544 2.2e-05 108_[+4]_4 chr3R:23914816-23914936 3.5e-05 10_[+4]_102 chr2R:8996958-8997078 3.5e-05 104_[+4]_8 chr2L:3579361-3579481 3.5e-05 64_[+4]_48 chr3R:10518685-10518805 3.5e-05 106_[+4]_6 chr2L:5374706-5374826 4.5e-05 71_[+4]_41 chrX:17779663-17779783 4.5e-05 95_[+4]_17 chr3R:16245582-16245702 5.7e-05 46_[+4]_66 chr2R:20043641-20043761 6.9e-05 100_[+4]_12 chr3R:22746877-22746997 6.9e-05 23_[+4]_89 chr2R:24335453-24335573 7.9e-05 14_[+4]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTGTTG width=8 seqs=18 chr2R:6541736-6541856 ( 24) TTTTGTTG 1 chr3R:24143517-24143637 ( 52) TTTTGTTG 1 chr3L:8913220-8913340 ( 14) TTTTGTTG 1 chrX:10575732-10575852 ( 47) TTTTGTTG 1 chrX:1261008-1261128 ( 10) TTTTGTTG 1 chr3R:18462602-18462722 ( 35) TTTTTTTG 1 chr2L:14419078-14419198 ( 52) TTTTTTTG 1 chrX:9722424-9722544 ( 109) TTTTTTTG 1 chr3R:23914816-23914936 ( 11) TGTTGTTG 1 chr2R:8996958-8997078 ( 105) TGTTGTTG 1 chr2L:3579361-3579481 ( 65) TGTTGTTG 1 chr3R:10518685-10518805 ( 107) TGTTGTTG 1 chr2L:5374706-5374826 ( 72) TTTTATTG 1 chrX:17779663-17779783 ( 96) TTTTATTG 1 chr3R:16245582-16245702 ( 47) TGTTTTTG 1 chr2R:20043641-20043761 ( 101) TTTTGATG 1 chr3R:22746877-22746997 ( 24) TTTTGATG 1 chr2R:24335453-24335573 ( 15) TTTTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 4.8e+004 -1081 -1081 -1081 210 -1081 -1081 4 163 -1081 -1081 -1081 210 -1081 -1081 -1081 210 -108 -1081 130 -7 -108 -1081 -1081 193 -1081 -1081 -1081 210 -1081 -1081 180 -207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 4.8e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.722222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.111111 0.000000 0.666667 0.222222 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTG MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]TT[GT]TTG -------------------------------------------------------------------------------- Time 25.40 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTATTAT MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::a::a: pos.-specific C :::::::: probability G :::::::: matrix T :aa:aa:a bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTATTAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10575732-10575852 113 8.91e-06 GTGCCGAATG Attattat chr2L:16438555-16438675 83 8.91e-06 TAATTTTGAA ATTATTAT TGCCAAGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10575732-10575852 8.9e-06 112_[+5] chr2L:16438555-16438675 8.9e-06 82_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTATTAT width=8 seqs=2 chrX:10575732-10575852 ( 113) ATTATTAT 1 chr2L:16438555-16438675 ( 83) ATTATTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.4e+005 208 -765 -765 -765 -765 -765 -765 209 -765 -765 -765 209 208 -765 -765 -765 -765 -765 -765 209 -765 -765 -765 209 208 -765 -765 -765 -765 -765 -765 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTATTAT MEME-5 regular expression -------------------------------------------------------------------------------- ATTATTAT -------------------------------------------------------------------------------- Time 31.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29277546-29277666 5.03e-03 8_[+1(1.79e-05)]_104 chr2R:19807130-19807250 1.48e-02 106_[+3(1.12e-05)]_6 chr3R:13842148-13842268 3.73e-01 120 chr2R:18257522-18257642 7.55e-01 120 chr3L:13212650-13212770 2.97e-01 120 chrX:6021917-6022037 5.73e-03 41_[+1(5.70e-05)]_71 chrX:6005402-6005522 2.52e-01 120 chr3R:10518685-10518805 5.44e-02 106_[+4(3.52e-05)]_6 chr3L:1389311-1389431 3.08e-01 120 chr3L:6370114-6370234 3.49e-03 83_[+3(1.12e-05)]_29 chrX:2085128-2085248 4.53e-01 120 chr2L:14302822-14302942 5.01e-01 120 chr3R:10474343-10474463 8.40e-03 38_[+1(1.79e-05)]_74 chr2L:14415637-14415757 5.53e-02 120 chr3L:10709695-10709815 4.64e-02 19_[+1(5.70e-05)]_93 chrX:1261008-1261128 3.76e-03 9_[+4(1.17e-05)]_103 chr2L:7082363-7082483 6.56e-01 120 chr3L:11373529-11373649 1.94e-01 120 chr2R:23294419-23294539 3.18e-01 120 chr2R:23237949-23238069 6.73e-01 120 chr3L:22856229-22856349 3.13e-01 120 chr2L:1444849-1444969 1.29e-02 61_[+1(8.50e-05)]_51 chr3L:22394518-22394638 9.55e-03 52_[+3(4.64e-05)]_60 chr3R:5812426-5812546 9.96e-01 120 chr3R:18025657-18025777 3.37e-02 45_[+1(1.79e-05)]_67 chrX:18563280-18563400 2.45e-02 38_[+1(9.51e-05)]_74 chr3R:18660507-18660627 8.39e-01 120 chr2R:11569458-11569578 6.78e-03 38_[+1(1.79e-05)]_74 chr2L:1409159-1409279 6.35e-02 22_[+1(9.51e-05)]_90 chr2R:15478568-15478688 4.28e-02 54_[+1(9.51e-05)]_58 chr2L:12635115-12635235 8.97e-01 120 chr3L:2842169-2842289 3.96e-02 22_[+2(6.13e-05)]_90 chr3R:23948595-23948715 9.55e-01 120 chrX:9722424-9722544 4.36e-03 108_[+4(2.17e-05)]_4 chr2R:24807123-24807243 7.25e-01 120 chr3R:14355080-14355200 6.78e-01 120 chr3L:1677898-1678018 4.69e-02 45_[+1(5.70e-05)]_67 chr3R:8656747-8656867 8.49e-01 120 chr3L:10315607-10315727 2.89e-03 70_[+2(6.13e-05)]_42 chr2R:17835748-17835868 1.41e-01 120 chr3R:19362786-19362906 3.19e-01 120 chr3R:4666894-4667014 3.21e-01 120 chr3R:13873798-13873918 7.03e-01 120 chr2L:500083-500203 4.96e-01 120 chr3R:31336116-31336236 3.00e-01 120 chr3R:8471811-8471931 8.53e-01 120 chr3R:29822677-29822797 9.69e-01 120 chr3R:13937281-13937401 5.19e-01 120 chr2L:7354708-7354828 6.78e-02 75_[+1(5.70e-05)]_37 chr3L:3695105-3695225 2.68e-03 90_[+3(1.12e-05)]_22 chr3L:12584038-12584158 1.91e-01 120 chrX:17543186-17543306 2.70e-01 120 chr3R:7178748-7178868 3.08e-01 120 chr2L:5501793-5501913 1.78e-01 120 chr3L:14636190-14636310 9.76e-03 112_[+3(1.12e-05)] chr2L:366310-366430 8.41e-04 69_[+3(2.40e-05)]_43 chr2R:11516363-11516483 9.99e-01 120 chr3L:10977073-10977193 8.46e-01 120 chr2L:7269135-7269255 7.87e-01 120 chr2L:16438555-16438675 1.92e-04 82_[+5(8.91e-06)]_30 chr2L:2185849-2185969 1.52e-03 120 chr2L:7870410-7870530 8.87e-01 120 chr2L:7356771-7356891 2.87e-01 120 chr3R:24994432-24994552 4.77e-01 120 chr2L:7907700-7907820 8.10e-01 120 chr2L:11986977-11987097 9.85e-01 120 chr2L:12594410-12594530 3.54e-01 120 chr3L:10992734-10992854 1.94e-01 120 chr3L:8955209-8955329 9.84e-01 120 chrX:17806063-17806183 9.97e-01 120 chr3L:6143323-6143443 6.69e-01 120 chrX:18631497-18631617 9.51e-01 120 chr3R:11946907-11947027 9.65e-01 120 chr2R:22731524-22731644 1.15e-03 69_[+4(6.88e-05)]_43 chr3R:8168667-8168787 2.45e-01 35_[+1(8.50e-05)]_77 chr3R:4254206-4254326 2.79e-02 120 chr3R:27170642-27170762 1.39e-01 120 chr3L:20656036-20656156 5.56e-01 120 chr3R:19287741-19287861 9.19e-02 120 chr3L:4065400-4065520 6.49e-01 120 chr3L:10261682-10261802 2.54e-01 120 chr2L:15388723-15388843 9.86e-01 120 chr2L:21798340-21798460 9.96e-01 120 chr3R:25191196-25191316 9.75e-01 120 chr2R:24852940-24853060 6.55e-01 120 chr2L:14419078-14419198 2.95e-02 51_[+4(2.17e-05)]_61 chr3R:31539582-31539702 8.69e-04 76_[+1(8.91e-06)]_14_[+2(3.16e-05)]_\ 14 chr3L:22128827-22128947 4.56e-01 120 chr3R:16375790-16375910 1.64e-01 58_[+2(4.66e-05)]_54 chr3L:8480484-8480604 7.76e-01 120 chr3R:13868541-13868661 1.44e-01 120 chr3R:29727720-29727840 9.41e-01 120 chr3L:16899912-16900032 6.08e-01 120 chrX:10575732-10575852 2.91e-04 5_[+4(3.52e-05)]_33_[+4(1.17e-05)]_\ 58_[+5(8.91e-06)] chr3L:11170401-11170521 9.99e-01 120 chr3R:23511484-23511604 3.37e-02 48_[+2(3.16e-05)]_64 chr3L:1130016-1130136 9.82e-01 120 chr3L:13255537-13255657 3.93e-01 120 chr2L:1406296-1406416 1.82e-03 33_[+1(9.51e-05)]_79 chrX:13542212-13542332 6.33e-02 120 chr3R:25011476-25011596 8.89e-02 120 chr3L:20163016-20163136 9.66e-01 120 chr3R:5100804-5100924 3.54e-01 120 chrX:2452489-2452609 3.99e-04 51_[+5(8.91e-06)]_61 chr3R:23509667-23509787 3.29e-01 120 chr2L:3579361-3579481 2.37e-01 38_[+4(3.52e-05)]_18_[+4(3.52e-05)]_\ 48 chr3L:19046908-19047028 1.21e-01 120 chr3L:7630427-7630547 7.36e-02 120 chrX:13977425-13977545 1.42e-01 120 chr3L:8027383-8027503 5.77e-01 120 chr3L:10282692-10282812 7.56e-03 15_[+3(2.40e-05)]_97 chr3L:15225392-15225512 5.35e-01 120 chr2R:22257344-22257464 5.96e-01 120 chr3R:30785349-30785469 9.54e-01 120 chr2R:17833713-17833833 6.72e-01 120 chr2R:18914928-18915048 1.95e-01 88_[+2(6.13e-05)]_24 chr2R:24869019-24869139 3.28e-01 75_[+2(4.66e-05)]_37 chr2R:24581718-24581838 2.56e-02 90_[+2(1.49e-05)]_22 chr3R:19009148-19009268 1.76e-01 120 chr3R:13935150-13935270 2.14e-01 120 chr2R:8996958-8997078 2.93e-01 104_[+4(3.52e-05)]_8 chr3R:26257745-26257865 5.78e-01 120 chr2R:18270316-18270436 3.61e-03 95_[+1(5.70e-05)]_17 chr3R:19016172-19016292 3.53e-03 120 chr3R:24667972-24668092 1.00e+00 120 chr2R:7218228-7218348 3.19e-02 81_[+2(4.66e-05)]_31 chr3L:22179499-22179619 1.01e-02 120 chr3R:31404125-31404245 9.79e-01 120 chr2L:21859621-21859741 9.50e-01 120 chr2L:12578475-12578595 4.28e-01 120 chr3R:16111184-16111304 1.16e-02 120 chr3L:9049980-9050100 3.76e-01 120 chr3R:10551110-10551230 1.15e-01 23_[+2(3.16e-05)]_13_[+2(1.49e-05)]_\ 68 chr3L:19035972-19036092 2.35e-02 74_[+1(5.70e-05)]_38 chr2R:24594767-24594887 3.21e-01 59_[+2(7.79e-05)]_53 chr3L:8913220-8913340 2.02e-02 13_[+4(1.17e-05)]_13_[+4(2.17e-05)]_\ 78 chr2L:4373665-4373785 6.83e-01 120 chr3R:23508799-23508919 3.79e-01 120 chr3R:6252926-6253046 3.89e-01 120 chrX:19703564-19703684 9.84e-01 120 chr2R:23300742-23300862 3.61e-01 120 chr2L:13331978-13332098 1.28e-01 112_[+2(1.49e-05)] chr2L:5307970-5308090 8.49e-01 120 chr3L:16214090-16214210 9.64e-01 120 chr2R:21562725-21562845 4.49e-01 120 chr2L:5414909-5415029 4.79e-01 120 chr2R:9828685-9828805 5.69e-01 120 chr2R:24846725-24846845 7.41e-01 120 chr3R:6244126-6244246 2.72e-01 120 chrX:18677788-18677908 2.30e-01 120 chrX:17779663-17779783 6.19e-03 95_[+4(4.54e-05)]_17 chr3R:22142631-22142751 6.99e-02 112_[+1(8.50e-05)] chrX:4381289-4381409 2.85e-01 120 chr3R:30386306-30386426 9.34e-01 120 chr3L:1458483-1458603 3.54e-02 97_[+1(3.67e-05)]_15 chr3R:29200748-29200868 5.05e-01 120 chr3L:14754322-14754442 9.21e-01 120 chr3R:16945965-16946085 1.00e-02 69_[+2(1.49e-05)]_43 chr2R:24901478-24901598 9.57e-01 120 chr3R:23513904-23514024 6.21e-02 120 chr2R:23675247-23675367 2.14e-01 10_[+1(3.67e-05)]_102 chr3R:24143517-24143637 3.19e-03 51_[+4(1.17e-05)]_61 chr3R:16113301-16113421 1.42e-04 33_[+3(4.64e-05)]_[+2(1.49e-05)]_71 chr2L:1396969-1397089 1.40e-01 120 chr2L:438511-438631 1.62e-01 120 chr3R:15632901-15633021 3.50e-01 120 chr2L:11052077-11052197 8.24e-01 120 chr3L:21128623-21128743 7.64e-02 120 chr3L:13196413-13196533 4.78e-02 53_[+2(1.49e-05)]_59 chr3L:4721705-4721825 1.86e-01 120 chr2R:18587426-18587546 3.54e-01 120 chr3L:8715344-8715464 5.23e-01 120 chrX:13542910-13543030 2.66e-01 120 chr2R:15865718-15865838 1.24e-01 120 chr2R:13473606-13473726 7.91e-01 120 chr3R:31459301-31459421 8.46e-01 120 chr3L:649148-649268 8.42e-01 120 chr3L:1899673-1899793 1.09e-01 56_[+2(3.16e-05)]_56 chr3L:11405433-11405553 2.98e-01 120 chr2L:11023519-11023639 5.03e-03 78_[+3(1.12e-05)]_34 chr2L:20781910-20782030 9.80e-01 120 chr3L:11390543-11390663 7.78e-01 120 chr3R:18462602-18462722 2.91e-03 34_[+4(2.17e-05)]_78 chr2L:18002182-18002302 8.08e-02 [+1(8.50e-05)]_112 chr2L:9605655-9605775 7.40e-01 120 chr3L:1679140-1679260 4.19e-01 120 chr2R:15226116-15226236 8.08e-01 120 chr2L:5374706-5374826 4.87e-02 71_[+4(4.54e-05)]_41 chr2R:21579210-21579330 9.79e-01 120 chrX:14118267-14118387 2.74e-01 120 chr2R:7414032-7414152 7.35e-01 120 chr3R:19283264-19283384 9.90e-01 120 chr3R:12690285-12690405 6.21e-01 120 chr3L:16623964-16624084 9.05e-02 120 chr2R:19225288-19225408 1.63e-01 120 chr3R:29096890-29097010 4.62e-02 120 chr3R:25758853-25758973 3.36e-01 120 chr3R:15448904-15449024 1.43e-01 120 chr3R:11861114-11861234 1.83e-01 83_[+2(3.16e-05)]_29 chr3R:13790282-13790402 9.58e-03 70_[+2(1.49e-05)]_42 chr3L:22158216-22158336 2.35e-01 120 chr2R:24571247-24571367 4.78e-01 120 chr3L:13499404-13499524 4.14e-05 21_[+5(8.91e-06)]_10_[+3(1.12e-05)]_\ 73 chr2R:11268525-11268645 5.25e-01 120 chr3L:389984-390104 6.84e-03 120 chr3R:29095677-29095797 7.04e-02 11_[+2(7.79e-05)]_101 chr3L:362929-363049 1.77e-01 120 chr3R:4883686-4883806 9.36e-01 120 chr3R:22746877-22746997 1.06e-01 23_[+4(6.88e-05)]_89 chr2R:23055156-23055276 7.13e-02 120 chr2L:16659353-16659473 9.83e-01 120 chrX:17825252-17825372 6.05e-01 120 chr2R:6514319-6514439 1.63e-02 69_[+3(1.12e-05)]_43 chr2R:9044034-9044154 6.67e-01 120 chr3R:16091125-16091245 1.57e-02 19_[+3(7.21e-05)]_93 chr2R:23241784-23241904 8.27e-01 120 chr3L:6997581-6997701 9.62e-01 120 chr3R:23912619-23912739 9.11e-01 120 chr2R:6541736-6541856 1.63e-01 23_[+4(1.17e-05)]_89 chr2L:10791816-10791936 3.30e-01 120 chr3R:30786082-30786202 9.45e-01 120 chr3R:15589123-15589243 3.01e-01 120 chrX:19751364-19751484 3.04e-02 90_[+2(1.49e-05)]_22 chr2R:15990251-15990371 9.98e-01 120 chr3R:16245582-16245702 7.08e-02 46_[+4(5.71e-05)]_66 chr3R:8157899-8158019 2.72e-02 120 chr3R:24870295-24870415 1.62e-02 120 chr2R:24585332-24585452 3.43e-02 3_[+2(1.49e-05)]_109 chr2R:20026343-20026463 4.68e-02 104_[+1(8.50e-05)]_8 chr3L:10976210-10976330 8.15e-01 120 chr3R:14891687-14891807 6.14e-02 120 chr3R:24205741-24205861 5.31e-05 79_[+1(8.50e-05)]_17_[+3(1.12e-05)]_\ 8 chr3R:22942843-22942963 9.89e-01 120 chr3R:13786085-13786205 6.77e-01 120 chr2L:423605-423725 2.57e-01 120 chr3R:23914816-23914936 1.77e-01 10_[+4(3.52e-05)]_102 chr3R:6229745-6229865 3.19e-01 120 chr2R:20043641-20043761 9.41e-03 100_[+4(6.88e-05)]_12 chr3L:384904-385024 2.66e-02 104_[+3(7.21e-05)]_8 chrX:18539280-18539400 2.96e-01 120 chr3R:12227184-12227304 1.65e-01 65_[+1(8.50e-05)]_47 chr2R:24335453-24335573 1.30e-01 14_[+4(7.89e-05)]_98 chr3R:15483351-15483471 1.96e-01 120 chr2L:15413264-15413384 4.90e-02 120 chr3L:22851344-22851464 9.78e-01 120 chr3L:8388706-8388826 9.98e-01 120 chr3R:23497024-23497144 1.12e-04 6_[+2(1.49e-05)]_95_[+1(3.67e-05)]_\ 3 chr3L:676555-676675 4.92e-01 120 chr3R:5097194-5097314 5.48e-01 120 chr3R:16829615-16829735 8.24e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************