******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dip3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:16817764-16817884 1.0000 120 chr2R:18128711-18128831 1.0000 120 chr2L:13771045-13771165 1.0000 120 chr2L:3058876-3058996 1.0000 120 chr2R:9590750-9590870 1.0000 120 chr3R:24100848-24100968 1.0000 120 chr2R:20270992-20271112 1.0000 120 chrX:18494327-18494447 1.0000 120 chr3L:8891187-8891307 1.0000 120 chr2L:9779187-9779307 1.0000 120 chr2L:1043681-1043801 1.0000 120 chr3R:7500650-7500770 1.0000 120 chr3R:23337452-23337572 1.0000 120 chr2L:1145061-1145181 1.0000 120 chrX:3403524-3403644 1.0000 120 chr2R:8087007-8087127 1.0000 120 chr2L:5084942-5085062 1.0000 120 chr3R:30789510-30789630 1.0000 120 chr2R:21662468-21662588 1.0000 120 chrX:618807-618927 1.0000 120 chr2L:7890853-7890973 1.0000 120 chrX:19292486-19292606 1.0000 120 chr2R:23997224-23997344 1.0000 120 chr3L:18061932-18062052 1.0000 120 chr2L:2735074-2735194 1.0000 120 chr2L:16318439-16318559 1.0000 120 chr2R:20529489-20529609 1.0000 120 chr3L:12409121-12409241 1.0000 120 chr3L:1609803-1609923 1.0000 120 chr3R:24360148-24360268 1.0000 120 chr2L:20078965-20079085 1.0000 120 chrX:15120202-15120322 1.0000 120 chr3R:8524436-8524556 1.0000 120 chr3R:16704345-16704465 1.0000 120 chr3R:26333450-26333570 1.0000 120 chr2L:11066097-11066217 1.0000 120 chr2R:18774916-18775036 1.0000 120 chr3R:4337671-4337791 1.0000 120 chrX:4614452-4614572 1.0000 120 chr3R:27557152-27557272 1.0000 120 chr3L:19905602-19905722 1.0000 120 chrX:23010735-23010855 1.0000 120 chrX:18366685-18366805 1.0000 120 chr3R:21118935-21119055 1.0000 120 chr3L:5819439-5819559 1.0000 120 chr3R:23941772-23941892 1.0000 120 chr2L:18441365-18441485 1.0000 120 chr2L:5906998-5907118 1.0000 120 chr2L:2015330-2015450 1.0000 120 chr2L:10989309-10989429 1.0000 120 chrX:2708320-2708440 1.0000 120 chr3L:13478735-13478855 1.0000 120 chrX:19495312-19495432 1.0000 120 chr2L:1218176-1218296 1.0000 120 chr3L:11125973-11126093 1.0000 120 chrX:13676535-13676655 1.0000 120 chr3L:8709036-8709156 1.0000 120 chr3R:8893083-8893203 1.0000 120 chr2R:23567360-23567480 1.0000 120 chr2R:18180175-18180295 1.0000 120 chrX:7666816-7666936 1.0000 120 chr2L:19233463-19233583 1.0000 120 chr2R:10553760-10553880 1.0000 120 chrX:16781198-16781318 1.0000 120 chr3R:8784905-8785025 1.0000 120 chr3L:9697338-9697458 1.0000 120 chrX:23005018-23005138 1.0000 120 chr3L:5188485-5188605 1.0000 120 chr3R:15547907-15548027 1.0000 120 chr2R:16666634-16666754 1.0000 120 chrX:3950280-3950400 1.0000 120 chr2L:19452620-19452740 1.0000 120 chrX:3378518-3378638 1.0000 120 chr2L:16271082-16271202 1.0000 120 chr3R:5065064-5065184 1.0000 120 chrX:17465641-17465761 1.0000 120 chr2R:23297859-23297979 1.0000 120 chr3R:30200175-30200295 1.0000 120 chr2R:18158184-18158304 1.0000 120 chr2R:18698833-18698953 1.0000 120 chr3L:6609361-6609481 1.0000 120 chr3R:8930319-8930439 1.0000 120 chr3R:11460887-11461007 1.0000 120 chrX:801629-801749 1.0000 120 chrX:19243455-19243575 1.0000 120 chrX:10385836-10385956 1.0000 120 chr3R:27289788-27289908 1.0000 120 chr3R:12083744-12083864 1.0000 120 chrX:6267261-6267381 1.0000 120 chr2R:18811971-18812091 1.0000 120 chr2L:1230884-1231004 1.0000 120 chr2R:12066103-12066223 1.0000 120 chr2L:19121078-19121198 1.0000 120 chr3L:1320614-1320734 1.0000 120 chr2L:3880292-3880412 1.0000 120 chr2R:23942375-23942495 1.0000 120 chrX:5745199-5745319 1.0000 120 chr2L:4861679-4861799 1.0000 120 chr3R:12657285-12657405 1.0000 120 chr2R:6871309-6871429 1.0000 120 chr2L:4973854-4973974 1.0000 120 chr2L:16526658-16526778 1.0000 120 chr3R:31725204-31725324 1.0000 120 chr2L:19735938-19736058 1.0000 120 chr3L:7866704-7866824 1.0000 120 chr3L:22277296-22277416 1.0000 120 chrX:476540-476660 1.0000 120 chrX:21035344-21035464 1.0000 120 chrX:10387812-10387932 1.0000 120 chr2L:4458814-4458934 1.0000 120 chr2L:5209896-5210016 1.0000 120 chrX:14169201-14169321 1.0000 120 chrX:16102488-16102608 1.0000 120 chr4:660643-660763 1.0000 120 chr3R:20555149-20555269 1.0000 120 chr3R:26121253-26121373 1.0000 120 chr3L:10866750-10866870 1.0000 120 chr2R:23894904-23895024 1.0000 120 chr2L:3092692-3092812 1.0000 120 chr3R:16996194-16996314 1.0000 120 chrX:8900236-8900356 1.0000 120 chr2R:9549942-9550062 1.0000 120 chr2R:11178559-11178679 1.0000 120 chr2L:14619763-14619883 1.0000 120 chr2R:24293583-24293703 1.0000 120 chr2L:8084918-8085038 1.0000 120 chr2R:21091874-21091994 1.0000 120 chr3R:26121908-26122028 1.0000 120 chr3R:21161807-21161927 1.0000 120 chr3R:4403882-4404002 1.0000 120 chr3L:3970555-3970675 1.0000 120 chr3R:6170880-6171000 1.0000 120 chrX:1239918-1240038 1.0000 120 chr2R:11969092-11969212 1.0000 120 chr2L:8610978-8611098 1.0000 120 chr2R:18125857-18125977 1.0000 120 chr2L:14024791-14024911 1.0000 120 chr2R:17062621-17062741 1.0000 120 chr3R:21993029-21993149 1.0000 120 chrX:10587588-10587708 1.0000 120 chr2L:6819418-6819538 1.0000 120 chr2R:16097061-16097181 1.0000 120 chr3R:15139476-15139596 1.0000 120 chrX:16073471-16073591 1.0000 120 chr3L:627883-628003 1.0000 120 chrX:10086317-10086437 1.0000 120 chrX:1270827-1270947 1.0000 120 chr3R:16255430-16255550 1.0000 120 chr2R:17412702-17412822 1.0000 120 chr3L:10362658-10362778 1.0000 120 chrX:13333136-13333256 1.0000 120 chr3R:15287862-15287982 1.0000 120 chr2L:5325040-5325160 1.0000 120 chrX:16650533-16650653 1.0000 120 chr3L:9461742-9461862 1.0000 120 chr2L:13512219-13512339 1.0000 120 chr3R:19491121-19491241 1.0000 120 chrX:10184887-10185007 1.0000 120 chr3L:15563564-15563684 1.0000 120 chrX:11715412-11715532 1.0000 120 chrX:12547741-12547861 1.0000 120 chr3L:14036914-14037034 1.0000 120 chr2L:1715865-1715985 1.0000 120 chr3L:4353890-4354010 1.0000 120 chr2R:24186418-24186538 1.0000 120 chr2L:1629696-1629816 1.0000 120 chr2R:8572742-8572862 1.0000 120 chr2R:13999300-13999420 1.0000 120 chr3R:21156016-21156136 1.0000 120 chr2L:17384585-17384705 1.0000 120 chrX:13253256-13253376 1.0000 120 chrX:8436933-8437053 1.0000 120 chrX:3399459-3399579 1.0000 120 chr2R:17161035-17161155 1.0000 120 chrX:16385976-16386096 1.0000 120 chrX:11451162-11451282 1.0000 120 chr2L:19140964-19141084 1.0000 120 chrX:8141443-8141563 1.0000 120 chrX:3538872-3538992 1.0000 120 chr3R:8744360-8744480 1.0000 120 chr2R:19127973-19128093 1.0000 120 chr3R:14575906-14576026 1.0000 120 chrX:8233390-8233510 1.0000 120 chrX:1399728-1399848 1.0000 120 chrX:6109993-6110113 1.0000 120 chr2R:22450440-22450560 1.0000 120 chr2R:9103160-9103280 1.0000 120 chrX:19146393-19146513 1.0000 120 chr2R:24893644-24893764 1.0000 120 chrX:21074453-21074573 1.0000 120 chr2R:8002201-8002321 1.0000 120 chr2R:20319571-20319691 1.0000 120 chr2R:7987863-7987983 1.0000 120 chr4:43768-43888 1.0000 120 chr2R:10854264-10854384 1.0000 120 chr3R:15472837-15472957 1.0000 120 chr3L:8604436-8604556 1.0000 120 chr3L:20518203-20518323 1.0000 120 chr2L:13905468-13905588 1.0000 120 chrX:3741206-3741326 1.0000 120 chr2L:2730007-2730127 1.0000 120 chr3R:5861547-5861667 1.0000 120 chr2L:8361581-8361701 1.0000 120 chr3R:26566910-26567030 1.0000 120 chr3R:30095943-30096063 1.0000 120 chr3R:25168371-25168491 1.0000 120 chr3R:13446588-13446708 1.0000 120 chr2R:12174456-12174576 1.0000 120 chrX:10600652-10600772 1.0000 120 chr2L:11517196-11517316 1.0000 120 chrX:5892233-5892353 1.0000 120 chr3R:26235206-26235326 1.0000 120 chr4:1060939-1061059 1.0000 120 chrX:18834550-18834670 1.0000 120 chr2R:17478580-17478700 1.0000 120 chr2R:11809475-11809595 1.0000 120 chr3R:8564026-8564146 1.0000 120 chrX:8606312-8606432 1.0000 120 chrX:2720292-2720412 1.0000 120 chrX:19665973-19666093 1.0000 120 chr3R:24031871-24031991 1.0000 120 chr2R:17590838-17590958 1.0000 120 chr3L:14190093-14190213 1.0000 120 chrX:2136529-2136649 1.0000 120 chr3R:18215464-18215584 1.0000 120 chr2R:6157365-6157485 1.0000 120 chr2L:20734261-20734381 1.0000 120 chrX:1370146-1370266 1.0000 120 chr3R:28677001-28677121 1.0000 120 chr2L:7027105-7027225 1.0000 120 chr2L:20715193-20715313 1.0000 120 chr2L:19059015-19059135 1.0000 120 chr2R:12437116-12437236 1.0000 120 chr2R:12593498-12593618 1.0000 120 chr2L:1207632-1207752 1.0000 120 chr2L:8083239-8083359 1.0000 120 chr3L:19140509-19140629 1.0000 120 chrX:5671814-5671934 1.0000 120 chr3R:30280502-30280622 1.0000 120 chrX:1880298-1880418 1.0000 120 chr3L:9691279-9691399 1.0000 120 chr3L:19618549-19618669 1.0000 120 chr2R:13586401-13586521 1.0000 120 chr2L:15039381-15039501 1.0000 120 chrX:19866019-19866139 1.0000 120 chr2L:4394054-4394174 1.0000 120 chr2R:9544849-9544969 1.0000 120 chrX:11854846-11854966 1.0000 120 chrX:1859017-1859137 1.0000 120 chr3R:28599616-28599736 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Dip3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dip3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.319 C 0.189 G 0.188 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.319 C 0.189 G 0.188 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYTGCCAR MEME-1 width = 8 sites = 42 llr = 353 E-value = 2.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::::84 pos.-specific C :62:7a12 probability G a:2a3:14 matrix T :46::::: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * * Relative 1.4 * *** Entropy 1.2 ** *** (12.1 bits) 1.0 ** **** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCAA consensus TG G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13253256-13253376 110 4.35e-06 ATGGATCTTG GCTGCCAG AAG chrX:8900236-8900356 48 4.35e-06 TGTCCGCAGG GCTGCCAG ATCGTCGAGC chr2L:20734261-20734381 53 1.44e-05 AGCTGAGAGG GCTGCCAA CTGGCTGACA chr3R:15547907-15548027 94 1.44e-05 GTATGCAGTA GCTGCCAA TGAAATGAAC chr2L:2735074-2735194 38 1.44e-05 TTCTTTGAAA GCGGCCAG TGGAGAAGTG chrX:19866019-19866139 25 1.88e-05 TAAATTCTGT GCTGCCAC CTTTTCTTCT chr3R:14575906-14576026 29 1.88e-05 CTCGGTGGGG GCTGCCAC CTGCCGACGG chr3R:4403882-4404002 35 2.61e-05 AATAGTTTTA GCGGCCAA TTCATACTTC chr2R:17590838-17590958 46 3.31e-05 ACATCAGAGC GTTGCCAG AGTCCAGCTG chrX:2720292-2720412 51 3.31e-05 GTGAACAAGA GTTGCCAG ACGATCAGAG chrX:11715412-11715532 80 3.31e-05 TGTTGTGCCA GTTGCCAG CGACAGCGGC chr3R:15287862-15287982 107 3.31e-05 GAAATGCACC GTTGCCAG CACTTC chr2L:19735938-19736058 55 3.31e-05 TAGGCGCGGC GTTGCCAG ATCAAGTGGC chr3R:4337671-4337791 66 3.31e-05 ACGGGCCGTG GTTGCCAG ACCAAATCCC chr2L:11517196-11517316 40 3.74e-05 TTTACGAACG GCTGGCAG CGCTGTATAT chrX:8606312-8606432 11 4.47e-05 GTTGCGCTTT GCCGCCAA TAGATCCGAT chr3L:9461742-9461862 12 6.09e-05 GCCCGCCAGG GTTGCCAA CCTCCTAAAC chrX:3950280-3950400 29 6.09e-05 TTGAACTCCT GTTGCCAA GCTGCATTTT chr2R:9590750-9590870 23 6.09e-05 GAACATCTAT GTTGCCAA AATCTCCCTC chrX:19665973-19666093 44 7.09e-05 CTGGGCCCTC GCGGGCAG GGGCCGCGTT chrX:476540-476660 47 7.09e-05 ATTCCGCACG GCTGGCAA CCCTGGCCGA chr3R:31725204-31725324 27 7.09e-05 TTTAACAACT GCGGGCAG TGCACTAGTA chr2R:12066103-12066223 41 7.09e-05 GCGACACATA GCGGGCAG CTTCCAGGAT chrX:10385836-10385956 91 7.36e-05 CTGTAAAGCC GCCGCCAC CAAAAACTTT chr2R:18774916-18775036 42 8.07e-05 AGATTCTACA GTTGCCAC AAAACAGTTG chrX:2136529-2136649 81 9.93e-05 CACTGCCTAC GTCGCCAG CGACGATTCG chrX:17465641-17465761 86 9.93e-05 TGAAATCAGT GTGGCCAA ATGTTAGAAT chr2R:24186418-24186538 13 1.07e-04 CTTGTTTTGG GCGGGCAA TCGTGGGTCA chrX:19495312-19495432 53 1.16e-04 TTCAATTAAC GTTGGCAG TGGAGCTTCC chr2R:23997224-23997344 7 1.20e-04 GGCAGG GTGGCCAC CACAATGCGG chr2R:17062621-17062741 58 1.36e-04 CTTGAACAAT GCTGCCCA GCAGAATAAC chr2L:8084918-8085038 70 1.36e-04 CTCGGCGATC GCGGGCAC AGTGGGTTGC chr3R:16704345-16704465 26 1.36e-04 TCTAAATACC GCTGCCCA GGCACTTAGA chr2L:2730007-2730127 42 1.41e-04 TCGCGCTGAC GCCGGCAA ACACTTGGAA chrX:8141443-8141563 7 1.41e-04 AGCGTC GCCGGCAA GAGGGGTACG chr2R:23567360-23567480 20 1.41e-04 TCGCCTGCCA GCCGGCAA GCAAGTACAG chr3R:19491121-19491241 68 1.63e-04 AAAGCTGGAT GCTGCCGA ACTAATTTTG chr3R:30095943-30096063 7 1.70e-04 GCACCT GCTGCCCC ATAAGTGACT chr3R:21161807-21161927 46 1.91e-04 TTAGCATTTT GTTGGCAC TGCCTTGCGT chr3R:21156016-21156136 24 2.09e-04 AAGTGTGACC GCCGCCGG AAAGTAGCAA chr2R:16666634-16666754 24 2.09e-04 CACATTCGAT GCGGCCGA GTGGCTGTAC chr2L:20078965-20079085 35 2.36e-04 CCAGATTGTG GTTGCCCA ATCCATCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13253256-13253376 4.4e-06 109_[+1]_3 chrX:8900236-8900356 4.4e-06 47_[+1]_65 chr2L:20734261-20734381 1.4e-05 52_[+1]_60 chr3R:15547907-15548027 1.4e-05 93_[+1]_19 chr2L:2735074-2735194 1.4e-05 37_[+1]_75 chrX:19866019-19866139 1.9e-05 24_[+1]_88 chr3R:14575906-14576026 1.9e-05 28_[+1]_84 chr3R:4403882-4404002 2.6e-05 34_[+1]_78 chr2R:17590838-17590958 3.3e-05 45_[+1]_67 chrX:2720292-2720412 3.3e-05 50_[+1]_62 chrX:11715412-11715532 3.3e-05 79_[+1]_33 chr3R:15287862-15287982 3.3e-05 106_[+1]_6 chr2L:19735938-19736058 3.3e-05 54_[+1]_58 chr3R:4337671-4337791 3.3e-05 65_[+1]_47 chr2L:11517196-11517316 3.7e-05 39_[+1]_73 chrX:8606312-8606432 4.5e-05 10_[+1]_102 chr3L:9461742-9461862 6.1e-05 11_[+1]_101 chrX:3950280-3950400 6.1e-05 28_[+1]_84 chr2R:9590750-9590870 6.1e-05 22_[+1]_90 chrX:19665973-19666093 7.1e-05 43_[+1]_69 chrX:476540-476660 7.1e-05 46_[+1]_66 chr3R:31725204-31725324 7.1e-05 26_[+1]_86 chr2R:12066103-12066223 7.1e-05 40_[+1]_72 chrX:10385836-10385956 7.4e-05 90_[+1]_22 chr2R:18774916-18775036 8.1e-05 41_[+1]_71 chrX:2136529-2136649 9.9e-05 80_[+1]_32 chrX:17465641-17465761 9.9e-05 85_[+1]_27 chr2R:24186418-24186538 0.00011 12_[+1]_100 chrX:19495312-19495432 0.00012 52_[+1]_60 chr2R:23997224-23997344 0.00012 6_[+1]_106 chr2R:17062621-17062741 0.00014 57_[+1]_55 chr2L:8084918-8085038 0.00014 69_[+1]_43 chr3R:16704345-16704465 0.00014 25_[+1]_87 chr2L:2730007-2730127 0.00014 41_[+1]_71 chrX:8141443-8141563 0.00014 6_[+1]_106 chr2R:23567360-23567480 0.00014 19_[+1]_93 chr3R:19491121-19491241 0.00016 67_[+1]_45 chr3R:30095943-30096063 0.00017 6_[+1]_106 chr3R:21161807-21161927 0.00019 45_[+1]_67 chr3R:21156016-21156136 0.00021 23_[+1]_89 chr2R:16666634-16666754 0.00021 23_[+1]_89 chr2L:20078965-20079085 0.00024 34_[+1]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTGCCAR width=8 seqs=42 chrX:13253256-13253376 ( 110) GCTGCCAG 1 chrX:8900236-8900356 ( 48) GCTGCCAG 1 chr2L:20734261-20734381 ( 53) GCTGCCAA 1 chr3R:15547907-15548027 ( 94) GCTGCCAA 1 chr2L:2735074-2735194 ( 38) GCGGCCAG 1 chrX:19866019-19866139 ( 25) GCTGCCAC 1 chr3R:14575906-14576026 ( 29) GCTGCCAC 1 chr3R:4403882-4404002 ( 35) GCGGCCAA 1 chr2R:17590838-17590958 ( 46) GTTGCCAG 1 chrX:2720292-2720412 ( 51) GTTGCCAG 1 chrX:11715412-11715532 ( 80) GTTGCCAG 1 chr3R:15287862-15287982 ( 107) GTTGCCAG 1 chr2L:19735938-19736058 ( 55) GTTGCCAG 1 chr3R:4337671-4337791 ( 66) GTTGCCAG 1 chr2L:11517196-11517316 ( 40) GCTGGCAG 1 chrX:8606312-8606432 ( 11) GCCGCCAA 1 chr3L:9461742-9461862 ( 12) GTTGCCAA 1 chrX:3950280-3950400 ( 29) GTTGCCAA 1 chr2R:9590750-9590870 ( 23) GTTGCCAA 1 chrX:19665973-19666093 ( 44) GCGGGCAG 1 chrX:476540-476660 ( 47) GCTGGCAA 1 chr3R:31725204-31725324 ( 27) GCGGGCAG 1 chr2R:12066103-12066223 ( 41) GCGGGCAG 1 chrX:10385836-10385956 ( 91) GCCGCCAC 1 chr2R:18774916-18775036 ( 42) GTTGCCAC 1 chrX:2136529-2136649 ( 81) GTCGCCAG 1 chrX:17465641-17465761 ( 86) GTGGCCAA 1 chr2R:24186418-24186538 ( 13) GCGGGCAA 1 chrX:19495312-19495432 ( 53) GTTGGCAG 1 chr2R:23997224-23997344 ( 7) GTGGCCAC 1 chr2R:17062621-17062741 ( 58) GCTGCCCA 1 chr2L:8084918-8085038 ( 70) GCGGGCAC 1 chr3R:16704345-16704465 ( 26) GCTGCCCA 1 chr2L:2730007-2730127 ( 42) GCCGGCAA 1 chrX:8141443-8141563 ( 7) GCCGGCAA 1 chr2R:23567360-23567480 ( 20) GCCGGCAA 1 chr3R:19491121-19491241 ( 68) GCTGCCGA 1 chr3R:30095943-30096063 ( 7) GCTGCCCC 1 chr3R:21161807-21161927 ( 46) GTTGGCAC 1 chr3R:21156016-21156136 ( 24) GCCGCCGG 1 chr2R:16666634-16666754 ( 24) GCGGCCGA 1 chr2L:20078965-20079085 ( 35) GTTGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 2.0e-001 -1204 -1204 241 -1204 -1204 171 -1204 32 -1204 -18 34 97 -1204 -1204 241 -1204 -1204 192 60 -1204 -1204 240 -1204 -1204 138 -99 -139 -1204 43 1 102 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 2.0e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.619048 0.000000 0.380952 0.000000 0.166667 0.238095 0.595238 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.095238 0.071429 0.000000 0.428571 0.190476 0.380952 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAR MEME-1 regular expression -------------------------------------------------------------------------------- G[CT][TG]G[CG]CA[AG] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF YACAGTGC MEME-2 width = 8 sites = 33 llr = 279 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 27:7:::: pos.-specific C 52a::::7 probability G ::::a:a3 matrix T 32:3:a:: bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * *** Relative 1.4 * **** Entropy 1.2 * **** (12.2 bits) 1.0 * **** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACAGTGC consensus T T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8361581-8361701 30 7.38e-06 GTGCATGTTA CACAGTGC ACATGTTTTA chr2R:18180175-18180295 87 7.38e-06 TAAATAGCGC CACAGTGC TCCCGCTGTT chr2L:1207632-1207752 107 1.44e-05 TCCTTGGTCC CACTGTGC CTTTGG chrX:10184887-10185007 44 1.44e-05 CATTTCGGCC CACTGTGC AATGACGATA chrX:2708320-2708440 95 1.44e-05 ACGGAGGTCC CACTGTGC TGGGCCGTAG chr3R:23941772-23941892 94 1.44e-05 GCACTTGACA CACTGTGC AGTGCTGTGC chrX:19866019-19866139 2 1.88e-05 A CCCAGTGC GCCCATAAAT chr3R:26566910-26567030 85 1.88e-05 AGCAGCCACA CCCAGTGC AGCAACCAAT chrX:1859017-1859137 6 2.61e-05 CCATG CACAGTGG GTACTACTTG chrX:16650533-16650653 13 2.61e-05 TAGCCACTGG CACAGTGG GTCTCACATG chr2R:17161035-17161155 38 3.80e-05 AATGTGGCCT TACAGTGC AAATATATGC chr2L:4458814-4458934 65 3.80e-05 CATTGCTAAA TACAGTGC TGTATAACGG chr3R:7500650-7500770 77 3.80e-05 CTTGAAGCAG TACAGTGC TTTAGCAGGG chrX:18494327-18494447 89 3.80e-05 TCTAGCACCT TACAGTGC AGCGACCCCA chr2L:13905468-13905588 100 4.50e-05 TCGATTTTTT CTCAGTGC ATTATTGCCG chr2L:1230884-1231004 69 4.50e-05 GCTAGTTTCT CTCAGTGC ACTCGGCCAG chr3R:8930319-8930439 91 4.92e-05 AACGAGTGCT CCCTGTGC AGGAAAACCA chrX:2136529-2136649 113 5.62e-05 CTAGGGGCTC CACTGTGG chr2L:18441365-18441485 48 5.62e-05 TTTGACATGA CACTGTGG CGCCATTGCG chr2L:15039381-15039501 45 8.43e-05 AAATCCAACC AACAGTGC TGTGAAGCGA chrX:8436933-8437053 13 8.43e-05 GGTGTATTAA AACAGTGC TTAATAATTT chrX:3950280-3950400 46 9.14e-05 AGCTGCATTT TCCAGTGC ATAAACATTT chr2L:2730007-2730127 9 1.03e-04 CGGCGCGA TACAGTGG CGCGTGTATC chr3L:13478735-13478855 15 1.03e-04 TTGGAATAAT TACAGTGG GTATTGTAGC chr3R:16255430-16255550 93 1.17e-04 ATGTTCAAAA CTCAGTGG GGAAAGACTC chrX:18366685-18366805 110 1.28e-04 AGGTTTTTTT TTCAGTGC TTC chr3R:26333450-26333570 111 1.28e-04 AAATATTTTC TTCAGTGC AC chr3L:15563564-15563684 18 1.49e-04 AACCTAACGG AACTGTGC GATACGTGTT chr2L:10989309-10989429 111 1.49e-04 GCCATCTCCA AACTGTGC AC chrX:18834550-18834670 49 1.86e-04 AAAGCTTGTA AACAGTGG CTTGATTGCG chr3R:6170880-6171000 77 1.93e-04 GAAACACTTG TCCAGTGG CACCTCTTGG chr3L:627883-628003 76 2.27e-04 GAAAATTTCT CGCTGTGC TTAGACACCG chr2R:9103160-9103280 86 2.57e-04 TTGCGGTGGT CACACTGC GTCGGGGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8361581-8361701 7.4e-06 29_[+2]_83 chr2R:18180175-18180295 7.4e-06 86_[+2]_26 chr2L:1207632-1207752 1.4e-05 106_[+2]_6 chrX:10184887-10185007 1.4e-05 43_[+2]_69 chrX:2708320-2708440 1.4e-05 94_[+2]_18 chr3R:23941772-23941892 1.4e-05 93_[+2]_19 chrX:19866019-19866139 1.9e-05 1_[+2]_111 chr3R:26566910-26567030 1.9e-05 84_[+2]_28 chrX:1859017-1859137 2.6e-05 5_[+2]_107 chrX:16650533-16650653 2.6e-05 12_[+2]_100 chr2R:17161035-17161155 3.8e-05 37_[+2]_75 chr2L:4458814-4458934 3.8e-05 64_[+2]_48 chr3R:7500650-7500770 3.8e-05 76_[+2]_36 chrX:18494327-18494447 3.8e-05 88_[+2]_24 chr2L:13905468-13905588 4.5e-05 99_[+2]_13 chr2L:1230884-1231004 4.5e-05 68_[+2]_44 chr3R:8930319-8930439 4.9e-05 90_[+2]_22 chrX:2136529-2136649 5.6e-05 112_[+2] chr2L:18441365-18441485 5.6e-05 47_[+2]_65 chr2L:15039381-15039501 8.4e-05 44_[+2]_68 chrX:8436933-8437053 8.4e-05 12_[+2]_100 chrX:3950280-3950400 9.1e-05 45_[+2]_67 chr2L:2730007-2730127 0.0001 8_[+2]_104 chr3L:13478735-13478855 0.0001 14_[+2]_98 chr3R:16255430-16255550 0.00012 92_[+2]_20 chrX:18366685-18366805 0.00013 109_[+2]_3 chr3R:26333450-26333570 0.00013 110_[+2]_2 chr3L:15563564-15563684 0.00015 17_[+2]_95 chr2L:10989309-10989429 0.00015 110_[+2]_2 chrX:18834550-18834670 0.00019 48_[+2]_64 chr3R:6170880-6171000 0.00019 76_[+2]_36 chr3L:627883-628003 0.00023 75_[+2]_37 chr2R:9103160-9103280 0.00026 85_[+2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YACAGTGC width=8 seqs=33 chr2L:8361581-8361701 ( 30) CACAGTGC 1 chr2R:18180175-18180295 ( 87) CACAGTGC 1 chr2L:1207632-1207752 ( 107) CACTGTGC 1 chrX:10184887-10185007 ( 44) CACTGTGC 1 chrX:2708320-2708440 ( 95) CACTGTGC 1 chr3R:23941772-23941892 ( 94) CACTGTGC 1 chrX:19866019-19866139 ( 2) CCCAGTGC 1 chr3R:26566910-26567030 ( 85) CCCAGTGC 1 chrX:1859017-1859137 ( 6) CACAGTGG 1 chrX:16650533-16650653 ( 13) CACAGTGG 1 chr2R:17161035-17161155 ( 38) TACAGTGC 1 chr2L:4458814-4458934 ( 65) TACAGTGC 1 chr3R:7500650-7500770 ( 77) TACAGTGC 1 chrX:18494327-18494447 ( 89) TACAGTGC 1 chr2L:13905468-13905588 ( 100) CTCAGTGC 1 chr2L:1230884-1231004 ( 69) CTCAGTGC 1 chr3R:8930319-8930439 ( 91) CCCTGTGC 1 chrX:2136529-2136649 ( 113) CACTGTGG 1 chr2L:18441365-18441485 ( 48) CACTGTGG 1 chr2L:15039381-15039501 ( 45) AACAGTGC 1 chrX:8436933-8437053 ( 13) AACAGTGC 1 chrX:3950280-3950400 ( 46) TCCAGTGC 1 chr2L:2730007-2730127 ( 9) TACAGTGG 1 chr3L:13478735-13478855 ( 15) TACAGTGG 1 chr3R:16255430-16255550 ( 93) CTCAGTGG 1 chrX:18366685-18366805 ( 110) TTCAGTGC 1 chr3R:26333450-26333570 ( 111) TTCAGTGC 1 chr3L:15563564-15563684 ( 18) AACTGTGC 1 chr2L:10989309-10989429 ( 111) AACTGTGC 1 chrX:18834550-18834670 ( 49) AACAGTGG 1 chr3R:6170880-6171000 ( 77) TCCAGTGG 1 chr3L:627883-628003 ( 76) CGCTGTGC 1 chr2R:9103160-9103280 ( 86) CACACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.77533 E= 1.6e+004 -107 153 -1169 -1 106 -32 -263 -101 -1169 240 -1169 -1169 113 -1169 -1169 -1 -1169 -264 237 -1169 -1169 -1169 -1169 172 -1169 -1169 241 -1169 -1169 195 54 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.6e+004 0.151515 0.545455 0.000000 0.303030 0.666667 0.151515 0.030303 0.151515 0.000000 1.000000 0.000000 0.000000 0.696970 0.000000 0.000000 0.303030 0.000000 0.030303 0.969697 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.272727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGC MEME-2 regular expression -------------------------------------------------------------------------------- [CT]AC[AT]GTG[CG] -------------------------------------------------------------------------------- Time 15.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSCCGCG MEME-3 width = 8 sites = 2 llr = 25 E-value = 6.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a5aa:a: probability G a:5::a:a matrix T :::::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ** ***** Relative 1.4 ******** Entropy 1.2 ******** (18.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCGCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19866019-19866139 54 3.20e-06 TCGGAGATAC GCGCCGCG ACAAGAGTTG chr2R:9549942-9550062 108 3.20e-06 CATCTTGGTG GCCCCGCG AGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19866019-19866139 3.2e-06 53_[+3]_59 chr2R:9549942-9550062 3.2e-06 107_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSCCGCG width=8 seqs=2 chrX:19866019-19866139 ( 54) GCGCCGCG 1 chr2R:9549942-9550062 ( 108) GCCCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.0e+004 -765 -765 241 -765 -765 240 -765 -765 -765 140 141 -765 -765 240 -765 -765 -765 240 -765 -765 -765 -765 241 -765 -765 240 -765 -765 -765 -765 241 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCCGCG MEME-3 regular expression -------------------------------------------------------------------------------- GC[CG]CCGCG -------------------------------------------------------------------------------- Time 21.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGCGC MEME-4 width = 8 sites = 2 llr = 26 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:a probability G aa:aa:a: matrix T ::a::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2720292-2720412 1 2.55e-06 . GGTGGCGC ACGCAGGCTC chrX:6109993-6110113 109 2.55e-06 GCGGACGCCA GGTGGCGC CACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2720292-2720412 2.6e-06 [+4]_112 chrX:6109993-6110113 2.6e-06 108_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGCGC width=8 seqs=2 chrX:2720292-2720412 ( 1) GGTGGCGC 1 chrX:6109993-6110113 ( 109) GGTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.9e+004 -765 -765 241 -765 -765 -765 241 -765 -765 -765 -765 171 -765 -765 241 -765 -765 -765 241 -765 -765 240 -765 -765 -765 -765 241 -765 -765 240 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- GGTGGCGC -------------------------------------------------------------------------------- Time 28.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCGGC MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::a::a probability G a::a:aa: matrix T ::a::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8524436-8524556 72 2.56e-06 CTGTGCCTGC GCTGCGGC AGGAATGATG chr3R:24100848-24100968 66 2.56e-06 TTCACTTGGA GCTGCGGC AGCCCAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8524436-8524556 2.6e-06 71_[+5]_41 chr3R:24100848-24100968 2.6e-06 65_[+5]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCGGC width=8 seqs=2 chr3R:8524436-8524556 ( 72) GCTGCGGC 1 chr3R:24100848-24100968 ( 66) GCTGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.7e+004 -765 -765 241 -765 -765 240 -765 -765 -765 -765 -765 171 -765 -765 241 -765 -765 240 -765 -765 -765 -765 241 -765 -765 -765 241 -765 -765 240 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCGGC MEME-5 regular expression -------------------------------------------------------------------------------- GCTGCGGC -------------------------------------------------------------------------------- Time 34.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16817764-16817884 9.80e-01 120 chr2R:18128711-18128831 1.00e-01 120 chr2L:13771045-13771165 1.04e-01 120 chr2L:3058876-3058996 3.24e-01 120 chr2R:9590750-9590870 6.82e-02 22_[+1(6.09e-05)]_90 chr3R:24100848-24100968 3.44e-04 65_[+5(2.56e-06)]_47 chr2R:20270992-20271112 9.09e-01 120 chrX:18494327-18494447 7.08e-03 88_[+2(3.80e-05)]_24 chr3L:8891187-8891307 4.28e-01 120 chr2L:9779187-9779307 5.87e-01 120 chr2L:1043681-1043801 4.13e-02 120 chr3R:7500650-7500770 8.03e-02 76_[+2(3.80e-05)]_36 chr3R:23337452-23337572 9.99e-01 120 chr2L:1145061-1145181 9.78e-01 120 chrX:3403524-3403644 8.80e-01 120 chr2R:8087007-8087127 8.43e-01 120 chr2L:5084942-5085062 7.52e-01 120 chr3R:30789510-30789630 9.95e-01 120 chr2R:21662468-21662588 9.71e-01 120 chrX:618807-618927 1.95e-03 120 chr2L:7890853-7890973 5.34e-02 120 chrX:19292486-19292606 6.01e-01 120 chr2R:23997224-23997344 9.02e-03 120 chr3L:18061932-18062052 3.82e-01 120 chr2L:2735074-2735194 6.26e-03 37_[+1(1.44e-05)]_75 chr2L:16318439-16318559 1.71e-01 120 chr2R:20529489-20529609 8.53e-01 120 chr3L:12409121-12409241 9.43e-01 120 chr3L:1609803-1609923 3.88e-02 63_[+3(3.20e-06)]_49 chr3R:24360148-24360268 7.72e-01 120 chr2L:20078965-20079085 2.69e-01 120 chrX:15120202-15120322 7.65e-01 120 chr3R:8524436-8524556 6.42e-05 71_[+5(2.56e-06)]_41 chr3R:16704345-16704465 1.54e-01 120 chr3R:26333450-26333570 4.97e-01 120 chr2L:11066097-11066217 9.64e-01 120 chr2R:18774916-18775036 2.19e-02 41_[+1(8.07e-05)]_71 chr3R:4337671-4337791 5.11e-02 65_[+1(3.31e-05)]_47 chrX:4614452-4614572 9.95e-01 120 chr3R:27557152-27557272 4.63e-01 120 chr3L:19905602-19905722 3.62e-01 120 chrX:23010735-23010855 2.13e-01 120 chrX:18366685-18366805 3.45e-02 120 chr3R:21118935-21119055 4.80e-01 120 chr3L:5819439-5819559 9.75e-01 120 chr3R:23941772-23941892 2.20e-02 93_[+2(1.44e-05)]_19 chr2L:18441365-18441485 4.66e-03 47_[+2(5.62e-05)]_65 chr2L:5906998-5907118 2.29e-02 80_[+5(8.57e-05)]_32 chr2L:2015330-2015450 4.66e-01 120 chr2L:10989309-10989429 1.09e-02 120 chrX:2708320-2708440 2.88e-03 94_[+2(1.44e-05)]_18 chr3L:13478735-13478855 4.25e-01 120 chrX:19495312-19495432 5.94e-02 120 chr2L:1218176-1218296 2.86e-01 120 chr3L:11125973-11126093 9.73e-01 120 chrX:13676535-13676655 5.42e-01 120 chr3L:8709036-8709156 4.65e-01 120 chr3R:8893083-8893203 9.99e-01 120 chr2R:23567360-23567480 3.77e-02 120 chr2R:18180175-18180295 6.18e-03 86_[+2(7.38e-06)]_26 chrX:7666816-7666936 7.00e-01 120 chr2L:19233463-19233583 9.77e-01 120 chr2R:10553760-10553880 6.94e-01 120 chrX:16781198-16781318 7.32e-01 120 chr3R:8784905-8785025 8.35e-01 120 chr3L:9697338-9697458 1.00e+00 120 chrX:23005018-23005138 7.12e-01 120 chr3L:5188485-5188605 5.72e-01 120 chr3R:15547907-15548027 4.72e-02 93_[+1(1.44e-05)]_19 chr2R:16666634-16666754 1.09e-02 20_[+5(8.57e-05)]_92 chrX:3950280-3950400 2.51e-02 28_[+1(6.09e-05)]_9_[+2(9.14e-05)]_\ 67 chr2L:19452620-19452740 9.88e-02 120 chrX:3378518-3378638 4.29e-01 120 chr2L:16271082-16271202 6.73e-01 120 chr3R:5065064-5065184 4.34e-01 120 chrX:17465641-17465761 1.93e-01 85_[+1(9.93e-05)]_27 chr2R:23297859-23297979 1.25e-01 120 chr3R:30200175-30200295 7.09e-01 120 chr2R:18158184-18158304 4.84e-01 120 chr2R:18698833-18698953 9.85e-01 120 chr3L:6609361-6609481 8.97e-01 120 chr3R:8930319-8930439 1.81e-01 90_[+2(4.92e-05)]_22 chr3R:11460887-11461007 1.00e+00 120 chrX:801629-801749 5.44e-01 120 chrX:19243455-19243575 1.00e+00 120 chrX:10385836-10385956 2.15e-03 90_[+1(7.36e-05)]_22 chr3R:27289788-27289908 7.66e-01 120 chr3R:12083744-12083864 9.85e-01 120 chrX:6267261-6267381 9.68e-01 120 chr2R:18811971-18812091 7.92e-01 120 chr2L:1230884-1231004 8.20e-02 68_[+2(4.50e-05)]_44 chr2R:12066103-12066223 3.25e-04 27_[+5(8.57e-05)]_5_[+1(7.09e-05)]_\ 72 chr2L:19121078-19121198 8.77e-01 120 chr3L:1320614-1320734 7.18e-01 120 chr2L:3880292-3880412 6.14e-01 120 chr2R:23942375-23942495 8.45e-01 120 chrX:5745199-5745319 1.69e-01 120 chr2L:4861679-4861799 9.73e-01 120 chr3R:12657285-12657405 9.98e-01 120 chr2R:6871309-6871429 4.79e-02 120 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chrX:19866019-19866139 2.96e-07 1_[+2(1.88e-05)]_15_[+1(1.88e-05)]_\ 21_[+3(3.20e-06)]_59 chr2L:4394054-4394174 8.49e-01 120 chr2R:9544849-9544969 9.74e-01 120 chrX:11854846-11854966 1.00e+00 120 chrX:1859017-1859137 8.97e-02 5_[+2(2.61e-05)]_107 chr3R:28599616-28599736 5.25e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************