******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dif.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:21221920-21222040 1.0000 120 chr3L:22851334-22851454 1.0000 120 chr3R:29876368-29876488 1.0000 120 chr3L:3537103-3537223 1.0000 120 chr3R:28324983-28325103 1.0000 120 chrX:2013494-2013614 1.0000 120 chr2L:166188-166308 1.0000 120 chr3L:8643941-8644061 1.0000 120 chr3R:14730820-14730940 1.0000 120 chr2L:1163903-1164023 1.0000 120 chr2R:7477765-7477885 1.0000 120 chr2L:2194448-2194568 1.0000 120 chr3R:6157227-6157347 1.0000 120 chrX:1623316-1623436 1.0000 120 chr3L:20984301-20984421 1.0000 120 chr2R:10581536-10581656 1.0000 120 chr3L:18186899-18187019 1.0000 120 chr3R:21094396-21094516 1.0000 120 chr2R:5999540-5999660 1.0000 120 chr2R:23722599-23722719 1.0000 120 chr2R:17806768-17806888 1.0000 120 chr2R:7681891-7682011 1.0000 120 chr3R:7760900-7761020 1.0000 120 chrX:6725241-6725361 1.0000 120 chr2R:24787710-24787830 1.0000 120 chr3R:14565557-14565677 1.0000 120 chr2L:21249023-21249143 1.0000 120 chr3R:5555026-5555146 1.0000 120 chr2L:9213757-9213877 1.0000 120 chr3R:29283862-29283982 1.0000 120 chr2R:10278969-10279089 1.0000 120 chr3R:27736447-27736567 1.0000 120 chr2R:16386845-16386965 1.0000 120 chr2R:18406821-18406941 1.0000 120 chr3L:12543440-12543560 1.0000 120 chr3R:10864104-10864224 1.0000 120 chr3R:24593876-24593996 1.0000 120 chr3R:13258822-13258942 1.0000 120 chrX:1841455-1841575 1.0000 120 chrX:16835514-16835634 1.0000 120 chr2L:16496623-16496743 1.0000 120 chrX:12745228-12745348 1.0000 120 chr2R:13840032-13840152 1.0000 120 chr2R:7454486-7454606 1.0000 120 chr3L:17500342-17500462 1.0000 120 chrX:14200095-14200215 1.0000 120 chr3R:18912918-18913038 1.0000 120 chrX:7285492-7285612 1.0000 120 chr2R:18231211-18231331 1.0000 120 chr3L:9733827-9733947 1.0000 120 chr3R:10686826-10686946 1.0000 120 chr2R:18503487-18503607 1.0000 120 chr3R:25316201-25316321 1.0000 120 chr2R:12942632-12942752 1.0000 120 chrX:1385984-1386104 1.0000 120 chr3R:25783133-25783253 1.0000 120 chr3R:8094037-8094157 1.0000 120 chr3R:11985002-11985122 1.0000 120 chr2L:16477709-16477829 1.0000 120 chr2L:12824446-12824566 1.0000 120 chrX:4214512-4214632 1.0000 120 chr3R:27636866-27636986 1.0000 120 chr2R:18229829-18229949 1.0000 120 chr2L:10613305-10613425 1.0000 120 chr3L:19483133-19483253 1.0000 120 chr3R:9353873-9353993 1.0000 120 chr2R:9006565-9006685 1.0000 120 chr2R:14361819-14361939 1.0000 120 chr3L:17421083-17421203 1.0000 120 chr2L:17387801-17387921 1.0000 120 chrX:17651354-17651474 1.0000 120 chrX:11791681-11791801 1.0000 120 chr2R:18514911-18515031 1.0000 120 chr2R:17159189-17159309 1.0000 120 chr2L:501778-501898 1.0000 120 chrX:14082852-14082972 1.0000 120 chr2R:16220043-16220163 1.0000 120 chr2R:5893675-5893795 1.0000 120 chr2R:10807373-10807493 1.0000 120 chr3L:4167496-4167616 1.0000 120 chr2L:5107788-5107908 1.0000 120 chrX:6805648-6805768 1.0000 120 chrX:7324529-7324649 1.0000 120 chrX:15302497-15302617 1.0000 120 chr3R:23132433-23132553 1.0000 120 chr2R:23643223-23643343 1.0000 120 chrX:5900828-5900948 1.0000 120 chr3L:14515490-14515610 1.0000 120 chr3R:27075746-27075866 1.0000 120 chr3L:21709914-21710034 1.0000 120 chr3R:29526699-29526819 1.0000 120 chr3L:9053571-9053691 1.0000 120 chr3L:11715257-11715377 1.0000 120 chr3R:14917685-14917805 1.0000 120 chr3R:31944964-31945084 1.0000 120 chr2L:8334875-8334995 1.0000 120 chrX:15569147-15569267 1.0000 120 chr3L:22466244-22466364 1.0000 120 chr2R:15676633-15676753 1.0000 120 chr2L:12423370-12423490 1.0000 120 chr2R:15610032-15610152 1.0000 120 chr2R:11194404-11194524 1.0000 120 chrX:1562494-1562614 1.0000 120 chr3L:8057618-8057738 1.0000 120 chr2L:9946221-9946341 1.0000 120 chr3R:21604696-21604816 1.0000 120 chrX:8870157-8870277 1.0000 120 chrX:4448669-4448789 1.0000 120 chr3L:445875-445995 1.0000 120 chr2R:23419559-23419679 1.0000 120 chr2R:5773137-5773257 1.0000 120 chr2R:18291661-18291781 1.0000 120 chr2L:873847-873967 1.0000 120 chr2L:9506709-9506829 1.0000 120 chr2L:16754260-16754380 1.0000 120 chrX:2043762-2043882 1.0000 120 chrX:6991388-6991508 1.0000 120 chr2L:10032562-10032682 1.0000 120 chr3L:881030-881150 1.0000 120 chr2R:24760542-24760662 1.0000 120 chr3L:3257751-3257871 1.0000 120 chr2L:2212559-2212679 1.0000 120 chr3R:19286079-19286199 1.0000 120 chr2L:1187582-1187702 1.0000 120 chrX:13625522-13625642 1.0000 120 chr3L:14624510-14624630 1.0000 120 chr3R:17681710-17681830 1.0000 120 chr3L:15510896-15511016 1.0000 120 chr2L:19454156-19454276 1.0000 120 chr3R:4807762-4807882 1.0000 120 chr3L:12804453-12804573 1.0000 120 chr2R:17509180-17509300 1.0000 120 chr2R:23872516-23872636 1.0000 120 chr3R:4394311-4394431 1.0000 120 chr2R:22654562-22654682 1.0000 120 chr3L:8056416-8056536 1.0000 120 chr3R:9730914-9731034 1.0000 120 chr2R:14965511-14965631 1.0000 120 chr3L:21303933-21304053 1.0000 120 chr2L:12288641-12288761 1.0000 120 chr2R:19825702-19825822 1.0000 120 chr3R:18447520-18447640 1.0000 120 chrX:17680231-17680351 1.0000 120 chrX:21067581-21067701 1.0000 120 chrX:395915-396035 1.0000 120 chrX:17710911-17711031 1.0000 120 chrX:18929263-18929383 1.0000 120 chr2R:22898538-22898658 1.0000 120 chrX:8510134-8510254 1.0000 120 chr3R:8785593-8785713 1.0000 120 chr3R:13304690-13304810 1.0000 120 chr3R:7967063-7967183 1.0000 120 chr2L:21628640-21628760 1.0000 120 chrX:2743744-2743864 1.0000 120 chr2R:24525776-24525896 1.0000 120 chr3R:21460064-21460184 1.0000 120 chr2R:15739907-15740027 1.0000 120 chr3R:31936998-31937118 1.0000 120 chr3R:27220842-27220962 1.0000 120 chr3R:25208317-25208437 1.0000 120 chrX:3778739-3778859 1.0000 120 chr3L:18105701-18105821 1.0000 120 chr2L:19136465-19136585 1.0000 120 chr3L:180185-180305 1.0000 120 chr3L:4349477-4349597 1.0000 120 chr2R:7371352-7371472 1.0000 120 chrX:18276867-18276987 1.0000 120 chrX:10930710-10930830 1.0000 120 chr3L:21098794-21098914 1.0000 120 chrX:16744481-16744601 1.0000 120 chr3L:3109813-3109933 1.0000 120 chr2L:7084614-7084734 1.0000 120 chr3R:15901411-15901531 1.0000 120 chr3L:4692224-4692344 1.0000 120 chrX:3833211-3833331 1.0000 120 chr3L:20733944-20734064 1.0000 120 chr3R:23258638-23258758 1.0000 120 chr3R:8316876-8316996 1.0000 120 chr2R:8293602-8293722 1.0000 120 chr2R:7726430-7726550 1.0000 120 chr3R:29935851-29935971 1.0000 120 chr2L:14207604-14207724 1.0000 120 chr3L:5610724-5610844 1.0000 120 chrX:16647824-16647944 1.0000 120 chr3R:26098650-26098770 1.0000 120 chr2L:13960565-13960685 1.0000 120 chr3R:18507833-18507953 1.0000 120 chr2L:429601-429721 1.0000 120 chr3R:6407675-6407795 1.0000 120 chr3R:9534737-9534857 1.0000 120 chr3L:17579790-17579910 1.0000 120 chr3R:29095564-29095684 1.0000 120 chrX:7697501-7697621 1.0000 120 chr3R:29064217-29064337 1.0000 120 chrX:18489674-18489794 1.0000 120 chr2R:7086142-7086262 1.0000 120 chrX:3685654-3685774 1.0000 120 chr2R:12586541-12586661 1.0000 120 chr2R:10134759-10134879 1.0000 120 chr3R:8876380-8876500 1.0000 120 chr3R:9160475-9160595 1.0000 120 chr3R:11200148-11200268 1.0000 120 chrX:19701707-19701827 1.0000 120 chr2R:13991804-13991924 1.0000 120 chr2R:8069163-8069283 1.0000 120 chr2R:15011332-15011452 1.0000 120 chrX:18272867-18272987 1.0000 120 chr3L:17032168-17032288 1.0000 120 chr3L:18768941-18769061 1.0000 120 chr2R:6158092-6158212 1.0000 120 chr3R:18249374-18249494 1.0000 120 chr3R:31504984-31505104 1.0000 120 chr2L:21162966-21163086 1.0000 120 chr3R:21822319-21822439 1.0000 120 chrX:12747944-12748064 1.0000 120 chr3L:15305407-15305527 1.0000 120 chr3R:4738989-4739109 1.0000 120 chr2L:8411600-8411720 1.0000 120 chrX:13411524-13411644 1.0000 120 chr2R:17479002-17479122 1.0000 120 chrX:493351-493471 1.0000 120 chr3R:30460291-30460411 1.0000 120 chr3R:29215788-29215908 1.0000 120 chr2L:4726149-4726269 1.0000 120 chr2R:11542148-11542268 1.0000 120 chr3L:4554375-4554495 1.0000 120 chr3R:13789751-13789871 1.0000 120 chr3R:9501920-9502040 1.0000 120 chr3R:4236670-4236790 1.0000 120 chr3R:21852046-21852166 1.0000 120 chrX:1610106-1610226 1.0000 120 chr2R:22644833-22644953 1.0000 120 chr3R:27130747-27130867 1.0000 120 chr2R:6562915-6563035 1.0000 120 chrX:494291-494411 1.0000 120 chr2R:7493065-7493185 1.0000 120 chr3L:3253782-3253902 1.0000 120 chr3R:24799596-24799716 1.0000 120 chr2L:6472010-6472130 1.0000 120 chr3R:5247018-5247138 1.0000 120 chr3L:3242211-3242331 1.0000 120 chr3L:8819501-8819621 1.0000 120 chr3L:9211431-9211551 1.0000 120 chr3R:16038087-16038207 1.0000 120 chrX:12007706-12007826 1.0000 120 chrX:6987245-6987365 1.0000 120 chr3L:15684265-15684385 1.0000 120 chr3L:2824860-2824980 1.0000 120 chr3R:28677848-28677968 1.0000 120 chr3R:23048174-23048294 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Dif/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dif.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.255 G 0.251 T 0.247 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.255 G 0.251 T 0.247 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-1 width = 8 sites = 97 llr = 742 E-value = 3.8e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 9:a:9272 probability G :1:::::1 matrix T 18:a1837 bits 2.0 ** 1.8 ** 1.6 * ** 1.4 * *** Relative 1.2 ***** * Entropy 1.0 ******* (11.0 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2824860-2824980 41 1.57e-05 CCTCCCACAA CTCTCTCT GTCTTTCGGC chrX:6987245-6987365 77 1.57e-05 CACGAATCTC CTCTCTCT TTGAGCTACG chrX:12007706-12007826 59 1.57e-05 ctctccctct ctctctct ctgtcacgct chrX:1610106-1610226 65 1.57e-05 AATTCTCACT CTCTCTCT CGCTCGCGCC chrX:13411524-13411644 21 1.57e-05 cgctctctct ctctctct ctctctcgct chr3R:9160475-9160595 10 1.57e-05 AAGCTCCAT CTCTCTCT ATTTTTTTTA chrX:10930710-10930830 63 1.57e-05 TCTTGTTGTG CTCTCTCT GTCGGCAACA chrX:3778739-3778859 36 1.57e-05 CGTCACTtct ctctctct ctctctccgt chr3R:21460064-21460184 38 1.57e-05 AGCGGCAAct ctctctct ctctcttgct chr2R:24525776-24525896 26 1.57e-05 Acgctcttcg ctctctct ttctttacct chrX:395915-396035 51 1.57e-05 Gtcactctct ctctctct ttctctccga chr2L:12288641-12288761 52 1.57e-05 tttgctctct ctctctct ctcttgctct chr2R:14965511-14965631 76 1.57e-05 agctggctcg ctctctct gtctctctca chr3L:8056416-8056536 54 1.57e-05 CTCTTTATCG CTCTCTCT TGGAAAAGTT chr3L:12804453-12804573 52 1.57e-05 cactctccct ctctctct ctcacagtcg chr3R:17681710-17681830 31 1.57e-05 ctctgctccg ctctctct tttgagctct chr2R:5773137-5773257 61 1.57e-05 ctctctctct ctctctct ctctctctGC chr3L:11715257-11715377 96 1.57e-05 CCCACTATAT CTCTCTCT CCAGATCTGA chr2R:18514911-18515031 38 1.57e-05 Ttctctctcg ctctctct atctctctct chr2R:18229829-18229949 23 1.57e-05 TActcactct ctctctct ccttctctcg chr3R:25783133-25783253 42 1.57e-05 ctctctctaa ctctctct ctctctctct chr2R:18231211-18231331 83 1.57e-05 ttcgctctcc ctctctct GAATTCAAGC chr3R:13258822-13258942 104 1.57e-05 CCATCTCTCT CTCTCTCT TTATTTTTG chr3L:18186899-18187019 106 1.57e-05 ccttttctct ctctctct ctctctc chr3R:6157227-6157347 67 1.57e-05 TCAGctctct ctctctct ctctctctct chr2L:1163903-1164023 44 1.57e-05 ATAGTGGATC CTCTCTCT CCGCTCTCAG chr2R:13991804-13991924 20 3.10e-05 CTCTCATTCG CTCTCTTT GAGTTATAAG chr3R:9534737-9534857 65 3.10e-05 ACCCCACCGC CTCTCTTT CGCTCTCCGG chr3R:25208317-25208437 107 3.10e-05 TGCTCAGAGC ctctcttt gctctc chr2R:5893675-5893795 45 3.10e-05 AGCTCGCGAT CTCTCTTT TGGGGCTCTC chrX:11791681-11791801 103 3.10e-05 AGCTACATTG CTCTCTTT TAGTTATTAA chr2R:18503487-18503607 107 3.10e-05 ACTTGTTTGT CTCTCTTT AATATT chrX:7285492-7285612 69 3.10e-05 TATTCTGGCG CTCTCTTT CCCTCTcaca chr3L:17500342-17500462 50 3.10e-05 GATGCACTTC CTCTCTTT TGCGAAGAGC chr2R:18406821-18406941 54 3.10e-05 CTCTTAATTA CTCTCTTT CGAAATTCTA chr3R:21094396-21094516 21 3.10e-05 ctctcattca ctctctTT TTGGCCGAAA chr3R:14730820-14730940 84 3.10e-05 TCTGCGTAGC CTCTCTTT TCTCACTTGG chr3L:4167496-4167616 49 4.72e-05 GAGGCCGAGC CTCTCTCC CGAGAAGAGC chrX:18276867-18276987 61 6.35e-05 CCGAGAGAGC CTCTCCCT GTCTCTCTTC chr3L:180185-180305 60 6.35e-05 CTCTGGCACG CTCTCCCT TAAATCGAGC chrX:13625522-13625642 101 6.35e-05 CCCTTACCCC CTCTCCCT CTCCCTGTGC chr2R:7681891-7682011 8 6.35e-05 GCGGTAG CTCTCCCT CCCACTTATG chr3L:5610724-5610844 101 7.95e-05 CATTGTGGCG CTCTCTCG CTTGCTCGCT chr3R:18447520-18447640 81 7.95e-05 AGCGCCATTT CTCTCTCG CGATTTTTTT chr3R:4807762-4807882 6 7.95e-05 ACACG CTCTCTCG GCCACACATG chr3R:21604696-21604816 53 7.95e-05 CATACAGCGT CTCTCTCG CTTTACCGCT chr3R:9353873-9353993 75 7.95e-05 ACTTTGTTCC CTCTCTCG CAGATGAACC chr2L:16496623-16496743 49 7.95e-05 GCGGCGCTTG CTCTCTCG TTTCTCTCCA chr3L:21098794-21098914 37 1.11e-04 CGTTGCCTGT CTCTTTCT GCCGCAGCAT chrX:21067581-21067701 36 1.11e-04 GCTCTGCTTC CGCTCTCT TCGGACGCGG chrX:15302497-15302617 53 1.11e-04 TCCGCAATAG CTCTTTCT TCTCCGCTCG chrX:7697501-7697621 34 1.42e-04 CTTCAATTGG CTCTCTTC CAAACTTCTC chr2R:8293602-8293722 39 1.42e-04 CCGAGTCCAC CACTCTCT TGGAAACCGG chr3R:15901411-15901531 19 1.42e-04 ACCAGATTCG CACTCTCT GCCGGCAAAG chr3L:22466244-22466364 34 1.42e-04 AGCTTACCAT CTCTCTTC TGGCGCAGTC chrX:1562494-1562614 37 1.73e-04 GGCCCATTCG CTCTCCTT GATTTGGCAA chr2L:9213757-9213877 2 1.73e-04 T CTCTCCTT TCCTATATAT chr3R:18249374-18249494 85 2.04e-04 CGTTTCCTTG CTCTctca cactcgcact chr2L:7084614-7084734 79 2.04e-04 GCTCGCCTTT CTCTCTCA CAGAGATTGG chr2R:24760542-24760662 10 2.04e-04 CTCCTGGAA CTCTCTCA GCTGCGCTTG chr3L:18768941-18769061 6 2.37e-04 CTTCA CTCTCACT CTCGGTCTCG chr2R:7726430-7726550 96 2.37e-04 GCTCTCCCCC CTCTCCCC TACTAATTCA chr3L:14624510-14624630 16 2.37e-04 TGGTTCTGCC CTCTCACT CCCCCATCGT chr3L:14515490-14515610 75 2.37e-04 TTTTCGATTA CTCTCCCC CAAAAAATGT chr3L:881030-881150 55 2.67e-04 TCTTCACTCT CGCTCTTT GCAAGCTCGC chr2R:15610032-15610152 51 2.67e-04 TTAAGTCCTG CGCTCTTT GGCTCTTCTC chr3R:31944964-31945084 24 2.67e-04 CCCGCGCCGA CTCTTTTT TTTTGCCTTT chr3L:3253782-3253902 53 2.99e-04 CATCCATCCC CTCTCCCG CCCGCTGAGG chr2L:8411600-8411720 39 2.99e-04 GCAATTGGGG CTCTCCCG AAGAATGCGG chrX:3833211-3833331 33 2.99e-04 AAAGACGAGT CTCTCCCG CGGGGGAAGA chr3R:4394311-4394431 51 3.46e-04 TCACCAGAAA CTCTTTCC ACCGCAGCTC chrX:16835514-16835634 113 3.46e-04 CTCCACTCTC CGCTCTCC chr2R:16386845-16386965 61 3.46e-04 TTGCAACCCG TTCTCTTT CGTGCCTCTG chr2R:11542148-11542268 100 4.10e-04 CTCAACTCTC CACTCTCC AAAGGAGCCC chr3L:15305407-15305527 63 4.10e-04 TGCAGACAGA CGCTCCCT GATCGCCAAG chr3L:15510896-15511016 89 4.10e-04 GATAGCGCGG CACTCTCC ACATTCGCGT chr2R:12942632-12942752 96 4.10e-04 GCCCGGCAAC CGCTCCCT CGTCCGCCTC chr3L:22851334-22851454 6 4.10e-04 GCCCA CACTCTCC TGCTCTCACC chr3L:20733944-20734064 84 4.41e-04 CCAAAAACCC CTCTTTCG GCCTCATGGT chr3R:23132433-23132553 81 4.41e-04 GTTTTTCTTC CTCTTTCG GATCTTGAGA chrX:3685654-3685774 101 5.05e-04 TGTCTCGCCT TTCTCTCC ACCTCTTCCA chr2L:10032562-10032682 14 5.05e-04 TCGGACCGGT TTCTCTCC AAACTGCGCA chr2L:12824446-12824566 67 5.05e-04 TGTTTTGCCC CACTCCCT TCCCAACCTG chr3R:8094037-8094157 89 5.05e-04 CACGGACGCC CTCTCATT CGGTTCTTGC chr3R:18912918-18913038 48 5.05e-04 TCCACAAAGC CTCTCATT TCTCCGTTCT chr3L:3537103-3537223 38 5.05e-04 TTCACCACTC CTCTCCTC CCGGACGGAG chrX:18489674-18489794 23 5.37e-04 GGCGAGATGG TTCTCCCT GCGACTGGTT chrX:18929263-18929383 112 5.84e-04 ATTTGCAGTC CTCTCCTG C chrX:494291-494411 68 6.63e-04 GCGCATTTTT CACTTTCT GAATGAAAAT chr3L:17032168-17032288 18 6.63e-04 CTCAGACAGC CGCTCTTC ACTTTTCAAT chrX:2013494-2013614 25 6.63e-04 GTCTCCTCTG CTCTTTTC TCGTTTTGCT chrX:12747944-12748064 51 7.56e-04 GCCTGCcttc ttctttct tctacttctt chr2L:21628640-21628760 11 7.56e-04 GTTATTTCAG TGCTCTCT ACCAACAGAT chr2L:1187582-1187702 47 7.56e-04 TTCGCGCTGC CACTCTTC GAACAGCTGC chrX:1841455-1841575 48 8.64e-04 AGAATTCTCG CGCTCTCA GCCGCCAGTG chr3R:29876368-29876488 32 8.64e-04 TGTGCCAAGT TTCTCTTC CGAAAACCTG chr2R:15676633-15676753 106 1.01e-03 GTGCGTGGGC CGCTTTTT TGAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2824860-2824980 1.6e-05 40_[+1]_72 chrX:6987245-6987365 1.6e-05 76_[+1]_36 chrX:12007706-12007826 1.6e-05 58_[+1]_54 chrX:1610106-1610226 1.6e-05 64_[+1]_48 chrX:13411524-13411644 1.6e-05 20_[+1]_92 chr3R:9160475-9160595 1.6e-05 9_[+1]_103 chrX:10930710-10930830 1.6e-05 62_[+1]_50 chrX:3778739-3778859 1.6e-05 35_[+1]_77 chr3R:21460064-21460184 1.6e-05 37_[+1]_75 chr2R:24525776-24525896 1.6e-05 25_[+1]_87 chrX:395915-396035 1.6e-05 50_[+1]_62 chr2L:12288641-12288761 1.6e-05 51_[+1]_61 chr2R:14965511-14965631 1.6e-05 75_[+1]_37 chr3L:8056416-8056536 1.6e-05 53_[+1]_59 chr3L:12804453-12804573 1.6e-05 51_[+1]_61 chr3R:17681710-17681830 1.6e-05 30_[+1]_82 chr2R:5773137-5773257 1.6e-05 60_[+1]_52 chr3L:11715257-11715377 1.6e-05 95_[+1]_17 chr2R:18514911-18515031 1.6e-05 37_[+1]_75 chr2R:18229829-18229949 1.6e-05 22_[+1]_90 chr3R:25783133-25783253 1.6e-05 41_[+1]_71 chr2R:18231211-18231331 1.6e-05 82_[+1]_30 chr3R:13258822-13258942 1.6e-05 103_[+1]_9 chr3L:18186899-18187019 1.6e-05 105_[+1]_7 chr3R:6157227-6157347 1.6e-05 66_[+1]_46 chr2L:1163903-1164023 1.6e-05 43_[+1]_69 chr2R:13991804-13991924 3.1e-05 19_[+1]_93 chr3R:9534737-9534857 3.1e-05 64_[+1]_48 chr3R:25208317-25208437 3.1e-05 106_[+1]_6 chr2R:5893675-5893795 3.1e-05 44_[+1]_68 chrX:11791681-11791801 3.1e-05 102_[+1]_10 chr2R:18503487-18503607 3.1e-05 106_[+1]_6 chrX:7285492-7285612 3.1e-05 68_[+1]_44 chr3L:17500342-17500462 3.1e-05 49_[+1]_63 chr2R:18406821-18406941 3.1e-05 53_[+1]_59 chr3R:21094396-21094516 3.1e-05 20_[+1]_92 chr3R:14730820-14730940 3.1e-05 83_[+1]_29 chr3L:4167496-4167616 4.7e-05 48_[+1]_64 chrX:18276867-18276987 6.3e-05 60_[+1]_52 chr3L:180185-180305 6.3e-05 59_[+1]_53 chrX:13625522-13625642 6.3e-05 100_[+1]_12 chr2R:7681891-7682011 6.3e-05 7_[+1]_105 chr3L:5610724-5610844 7.9e-05 100_[+1]_12 chr3R:18447520-18447640 7.9e-05 80_[+1]_32 chr3R:4807762-4807882 7.9e-05 5_[+1]_107 chr3R:21604696-21604816 7.9e-05 52_[+1]_60 chr3R:9353873-9353993 7.9e-05 74_[+1]_38 chr2L:16496623-16496743 7.9e-05 48_[+1]_64 chr3L:21098794-21098914 0.00011 36_[+1]_76 chrX:21067581-21067701 0.00011 35_[+1]_77 chrX:15302497-15302617 0.00011 52_[+1]_60 chrX:7697501-7697621 0.00014 33_[+1]_79 chr2R:8293602-8293722 0.00014 38_[+1]_74 chr3R:15901411-15901531 0.00014 18_[+1]_94 chr3L:22466244-22466364 0.00014 33_[+1]_79 chrX:1562494-1562614 0.00017 36_[+1]_76 chr2L:9213757-9213877 0.00017 1_[+1]_111 chr3R:18249374-18249494 0.0002 84_[+1]_28 chr2L:7084614-7084734 0.0002 78_[+1]_34 chr2R:24760542-24760662 0.0002 9_[+1]_103 chr3L:18768941-18769061 0.00024 5_[+1]_107 chr2R:7726430-7726550 0.00024 95_[+1]_17 chr3L:14624510-14624630 0.00024 15_[+1]_97 chr3L:14515490-14515610 0.00024 74_[+1]_38 chr3L:881030-881150 0.00027 54_[+1]_58 chr2R:15610032-15610152 0.00027 50_[+1]_62 chr3R:31944964-31945084 0.00027 23_[+1]_89 chr3L:3253782-3253902 0.0003 52_[+1]_60 chr2L:8411600-8411720 0.0003 38_[+1]_74 chrX:3833211-3833331 0.0003 32_[+1]_80 chr3R:4394311-4394431 0.00035 50_[+1]_62 chrX:16835514-16835634 0.00035 112_[+1] chr2R:16386845-16386965 0.00035 60_[+1]_52 chr2R:11542148-11542268 0.00041 99_[+1]_13 chr3L:15305407-15305527 0.00041 62_[+1]_50 chr3L:15510896-15511016 0.00041 88_[+1]_24 chr2R:12942632-12942752 0.00041 95_[+1]_17 chr3L:22851334-22851454 0.00041 5_[+1]_107 chr3L:20733944-20734064 0.00044 83_[+1]_29 chr3R:23132433-23132553 0.00044 80_[+1]_32 chrX:3685654-3685774 0.0005 100_[+1]_12 chr2L:10032562-10032682 0.0005 13_[+1]_99 chr2L:12824446-12824566 0.0005 66_[+1]_46 chr3R:8094037-8094157 0.0005 88_[+1]_24 chr3R:18912918-18913038 0.0005 47_[+1]_65 chr3L:3537103-3537223 0.0005 37_[+1]_75 chrX:18489674-18489794 0.00054 22_[+1]_90 chrX:18929263-18929383 0.00058 111_[+1]_1 chrX:494291-494411 0.00066 67_[+1]_45 chr3L:17032168-17032288 0.00066 17_[+1]_95 chrX:2013494-2013614 0.00066 24_[+1]_88 chrX:12747944-12748064 0.00076 50_[+1]_62 chr2L:21628640-21628760 0.00076 10_[+1]_102 chr2L:1187582-1187702 0.00076 46_[+1]_66 chrX:1841455-1841575 0.00086 47_[+1]_65 chr3R:29876368-29876488 0.00086 31_[+1]_81 chr2R:15676633-15676753 0.001 105_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=97 chr3L:2824860-2824980 ( 41) CTCTCTCT 1 chrX:6987245-6987365 ( 77) CTCTCTCT 1 chrX:12007706-12007826 ( 59) CTCTCTCT 1 chrX:1610106-1610226 ( 65) CTCTCTCT 1 chrX:13411524-13411644 ( 21) CTCTCTCT 1 chr3R:9160475-9160595 ( 10) CTCTCTCT 1 chrX:10930710-10930830 ( 63) CTCTCTCT 1 chrX:3778739-3778859 ( 36) CTCTCTCT 1 chr3R:21460064-21460184 ( 38) CTCTCTCT 1 chr2R:24525776-24525896 ( 26) CTCTCTCT 1 chrX:395915-396035 ( 51) CTCTCTCT 1 chr2L:12288641-12288761 ( 52) CTCTCTCT 1 chr2R:14965511-14965631 ( 76) CTCTCTCT 1 chr3L:8056416-8056536 ( 54) CTCTCTCT 1 chr3L:12804453-12804573 ( 52) CTCTCTCT 1 chr3R:17681710-17681830 ( 31) CTCTCTCT 1 chr2R:5773137-5773257 ( 61) CTCTCTCT 1 chr3L:11715257-11715377 ( 96) CTCTCTCT 1 chr2R:18514911-18515031 ( 38) CTCTCTCT 1 chr2R:18229829-18229949 ( 23) CTCTCTCT 1 chr3R:25783133-25783253 ( 42) CTCTCTCT 1 chr2R:18231211-18231331 ( 83) CTCTCTCT 1 chr3R:13258822-13258942 ( 104) CTCTCTCT 1 chr3L:18186899-18187019 ( 106) CTCTCTCT 1 chr3R:6157227-6157347 ( 67) CTCTCTCT 1 chr2L:1163903-1164023 ( 44) CTCTCTCT 1 chr2R:13991804-13991924 ( 20) CTCTCTTT 1 chr3R:9534737-9534857 ( 65) CTCTCTTT 1 chr3R:25208317-25208437 ( 107) CTCTCTTT 1 chr2R:5893675-5893795 ( 45) CTCTCTTT 1 chrX:11791681-11791801 ( 103) CTCTCTTT 1 chr2R:18503487-18503607 ( 107) CTCTCTTT 1 chrX:7285492-7285612 ( 69) CTCTCTTT 1 chr3L:17500342-17500462 ( 50) CTCTCTTT 1 chr2R:18406821-18406941 ( 54) CTCTCTTT 1 chr3R:21094396-21094516 ( 21) CTCTCTTT 1 chr3R:14730820-14730940 ( 84) CTCTCTTT 1 chr3L:4167496-4167616 ( 49) CTCTCTCC 1 chrX:18276867-18276987 ( 61) CTCTCCCT 1 chr3L:180185-180305 ( 60) CTCTCCCT 1 chrX:13625522-13625642 ( 101) CTCTCCCT 1 chr2R:7681891-7682011 ( 8) CTCTCCCT 1 chr3L:5610724-5610844 ( 101) CTCTCTCG 1 chr3R:18447520-18447640 ( 81) CTCTCTCG 1 chr3R:4807762-4807882 ( 6) CTCTCTCG 1 chr3R:21604696-21604816 ( 53) CTCTCTCG 1 chr3R:9353873-9353993 ( 75) CTCTCTCG 1 chr2L:16496623-16496743 ( 49) CTCTCTCG 1 chr3L:21098794-21098914 ( 37) CTCTTTCT 1 chrX:21067581-21067701 ( 36) CGCTCTCT 1 chrX:15302497-15302617 ( 53) CTCTTTCT 1 chrX:7697501-7697621 ( 34) CTCTCTTC 1 chr2R:8293602-8293722 ( 39) CACTCTCT 1 chr3R:15901411-15901531 ( 19) CACTCTCT 1 chr3L:22466244-22466364 ( 34) CTCTCTTC 1 chrX:1562494-1562614 ( 37) CTCTCCTT 1 chr2L:9213757-9213877 ( 2) CTCTCCTT 1 chr3R:18249374-18249494 ( 85) CTCTCTCA 1 chr2L:7084614-7084734 ( 79) CTCTCTCA 1 chr2R:24760542-24760662 ( 10) CTCTCTCA 1 chr3L:18768941-18769061 ( 6) CTCTCACT 1 chr2R:7726430-7726550 ( 96) CTCTCCCC 1 chr3L:14624510-14624630 ( 16) CTCTCACT 1 chr3L:14515490-14515610 ( 75) CTCTCCCC 1 chr3L:881030-881150 ( 55) CGCTCTTT 1 chr2R:15610032-15610152 ( 51) CGCTCTTT 1 chr3R:31944964-31945084 ( 24) CTCTTTTT 1 chr3L:3253782-3253902 ( 53) CTCTCCCG 1 chr2L:8411600-8411720 ( 39) CTCTCCCG 1 chrX:3833211-3833331 ( 33) CTCTCCCG 1 chr3R:4394311-4394431 ( 51) CTCTTTCC 1 chrX:16835514-16835634 ( 113) CGCTCTCC 1 chr2R:16386845-16386965 ( 61) TTCTCTTT 1 chr2R:11542148-11542268 ( 100) CACTCTCC 1 chr3L:15305407-15305527 ( 63) CGCTCCCT 1 chr3L:15510896-15511016 ( 89) CACTCTCC 1 chr2R:12942632-12942752 ( 96) CGCTCCCT 1 chr3L:22851334-22851454 ( 6) CACTCTCC 1 chr3L:20733944-20734064 ( 84) CTCTTTCG 1 chr3R:23132433-23132553 ( 81) CTCTTTCG 1 chrX:3685654-3685774 ( 101) TTCTCTCC 1 chr2L:10032562-10032682 ( 14) TTCTCTCC 1 chr2L:12824446-12824566 ( 67) CACTCCCT 1 chr3R:8094037-8094157 ( 89) CTCTCATT 1 chr3R:18912918-18913038 ( 48) CTCTCATT 1 chr3L:3537103-3537223 ( 38) CTCTCCTC 1 chrX:18489674-18489794 ( 23) TTCTCCCT 1 chrX:18929263-18929383 ( 112) CTCTCCTG 1 chrX:494291-494411 ( 68) CACTTTCT 1 chr3L:17032168-17032288 ( 18) CGCTCTTC 1 chrX:2013494-2013614 ( 25) CTCTTTTC 1 chrX:12747944-12748064 ( 51) TTCTTTCT 1 chr2L:21628640-21628760 ( 11) TGCTCTCT 1 chr2L:1187582-1187702 ( 47) CACTCTTC 1 chrX:1841455-1841575 ( 48) CGCTCTCA 1 chr3R:29876368-29876488 ( 32) TTCTCTTC 1 chr2R:15676633-15676753 ( 106) CGCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.29181 E= 3.8e-031 -1324 186 -1324 -178 -158 -1324 -128 172 -1324 197 -1324 -1324 -1324 -1324 -1324 201 -1324 181 -1324 -126 -258 -54 -1324 166 -1324 148 -1324 22 -258 -54 -102 141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 3.8e-031 0.000000 0.927835 0.000000 0.072165 0.082474 0.000000 0.103093 0.814433 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.896907 0.000000 0.103093 0.041237 0.175258 0.000000 0.783505 0.000000 0.711340 0.000000 0.288660 0.041237 0.175258 0.123711 0.659794 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 regular expression -------------------------------------------------------------------------------- CTCTCT[CT]T -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGMGM MEME-2 width = 8 sites = 79 llr = 626 E-value = 6.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2a2a:5:5 pos.-specific C 2::::4:4 probability G 6:8:a:a: matrix T :::::1:: bits 2.0 * ** * 1.8 * ** * 1.6 * ** * 1.4 * ** * Relative 1.2 **** * Entropy 1.0 **** * (11.4 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A A C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17032168-17032288 67 1.48e-05 gagagagaga gagagaga gagcagaTTT chr3R:6407675-6407795 15 1.48e-05 AGAGAGCAGT GAGAGAGA GGCGTCGGCT chr3L:18105701-18105821 32 1.48e-05 aagagagcga gagagaga gggagCTATG chrX:2743744-2743864 51 1.48e-05 GAAAGTCATG gagagaga gagagagaga chr3R:4807762-4807882 78 1.48e-05 TAGAGCCTCT GAGAGAGA ACGCGAAATG chr2R:15610032-15610152 95 1.48e-05 CCGGGAGAGG GAGAGAGA AAGAGACCAA chr2R:15676633-15676753 54 1.48e-05 GCGGGAGCGA GAGAGAGA GTGGGAAAAT chr2L:501778-501898 76 1.48e-05 gagagcgaga gagagaga gCTGGCTCCA chrX:17651354-17651474 15 1.48e-05 ACTCTCTAAA GAGAGAGA ATCAGAGTCA chr3R:10864104-10864224 60 1.48e-05 gagagagaga gagagaga gcgaTAATTA chrX:1623316-1623436 65 1.48e-05 gagagagaga gagagaga gggagagGTG chr2R:11542148-11542268 74 3.00e-05 CTGCTAGAAA GAGAGAGC AGCAGACTCT chr3L:5610724-5610844 49 3.00e-05 GCGAGCGAGC GAGAGAGC AGGTGCGCAA chr3R:15901411-15901531 45 3.00e-05 AGATTCGCTA GAGAGAGC CCGCCAAAAC chrX:18276867-18276987 53 3.00e-05 CATGACAGCC GAGAGAGC CTCTCCCTGT chr3R:13304690-13304810 26 3.00e-05 CTCAGCTGAT GAGAGAGC TTTCCGGAGA chr3L:881030-881150 26 3.00e-05 AAATGCGAAG GAGAGAGC CCAAGTTTAT chr2L:5107788-5107908 75 3.00e-05 TAAAGGTAAC GAGAGAGC GAGCGGGGAG chr2R:10807373-10807493 72 3.00e-05 GTAATTGCAA GAGAGAGC AAGAGGCCAA chrX:14082852-14082972 9 3.00e-05 CACTGATT GAGAGAGC AATCTGGCAC chr3R:10686826-10686946 27 3.00e-05 GGCGTCGGCT GAGAgagc gggaggggag chr3L:22851334-22851454 52 3.00e-05 ATACCTGCAG GAGAGAGC TCCCCAAATT chr2L:21221920-21222040 76 3.00e-05 CTCAATGGCA GAGAGAGC ACTGCGATTT chr3R:13789751-13789871 40 4.53e-05 TTGGCCAACA GAGAGCGA GCGAAAGAAG chr3R:4738989-4739109 56 4.53e-05 CGGAAACGCa gagagcga aagagcgaag chr3R:11200148-11200268 57 4.53e-05 AAGAATCCAA GAGAGCGA GAGGGGTCCT chr3R:18447520-18447640 111 4.53e-05 ACTCTCTTAT GAGAGCGA AC chr3L:3257751-3257871 57 4.53e-05 CGCTCCGCAC GAGAGcga ttcaatccat chr3L:445875-445995 46 4.53e-05 CCTGAGAAAA GAGAGCGA GAGGAAAGGC chrX:8870157-8870277 63 4.53e-05 gatcgagatc gagagcga gagcgagagc chrX:6805648-6805768 61 4.53e-05 CAGCGGAGCG GAGAGCGA AGCGCAAGAG chrX:7285492-7285612 16 4.53e-05 AAGAGCGAGG GAGAGCGA GATTGTAAGC chr3R:16038087-16038207 15 6.10e-05 GCAAGACGCT GAGAGCGC CATTAACTCG chrX:17710911-17711031 48 6.10e-05 GCGCTCGACA GAGAGCGC GCGAGAGAAA chr3L:9053571-9053691 75 6.10e-05 GAGAGCTGGT GAGAGCGC GAAGAGAATT chrX:1385984-1386104 47 6.10e-05 GTCTTCGCCA GAGAGCGC TGAGTGGGAC chr2R:10134759-10134879 5 7.56e-05 TATA AAGAGAGA ACACCTCGAT chr2R:14361819-14361939 50 7.56e-05 CTTACGGAGA AAGAGAGA GGGAGGAGAG chr3L:15510896-15511016 27 1.05e-04 GGGAGAGGGA GAAAGAGA CGGGGCCGGC chr3R:28324983-28325103 18 1.05e-04 ATCGGGTCAA CAGAGAGA GTCGGAGTGC chr3R:29215788-29215908 102 1.20e-04 AAGAGAGGGA AAGAGAGC CCAAAAGGAA chr2R:19825702-19825822 79 1.20e-04 TATTGAGTAA AAGAGAGC AGGGAGAGTT chr3R:4394311-4394431 31 1.20e-04 AATGAAGTCG AAGAGAGC AGTCACCAGA chr3R:18912918-18913038 14 1.20e-04 AGTACGGCTC AAGAGAGC CGCATACTTT chr2L:8411600-8411720 65 1.66e-04 GGGAACGGAG GAAAGAGC GCTAAGTGAA chr3R:29064217-29064337 70 1.66e-04 gtgagaaaaa gaaagagc gcgttagagt chr3L:20733944-20734064 21 1.66e-04 TATGGCAACC GAAAGAGC CAAACTGCCG chr3R:19286079-19286199 21 1.66e-04 CACTGCGGCA GAAAGAGC CATGTCCGAA chr3L:11715257-11715377 79 1.66e-04 TCGAGAGGCG CAGAGAGC CCACTATATC chr2R:9006565-9006685 96 1.66e-04 TGTGGATGCT AAGAGCGA GGCCTGGTGA chr3L:15684265-15684385 84 1.96e-04 CAAGAGCTTG CAGAGCGA AAATCGGTAG chr2R:22644833-22644953 23 1.96e-04 AGAGCCAAAA GAAAGCGA TGGAACCAAA chr2L:21162966-21163086 62 1.96e-04 Cgtgccactg cagagcga agcaagtgca chr3L:4692224-4692344 29 1.96e-04 CTGGAGTAAA CAGAGCGA ATTCAGAGCT chrX:18929263-18929383 10 1.96e-04 AAAGATAGC CAGAGCGA GACGGCGAAT chr2L:10032562-10032682 64 1.96e-04 TCCAATGGAG CAGAGCGA AAGCAGACAA chr3R:27736447-27736567 67 1.96e-04 ATGAGGTAAG CAGAGCGA TCGCAGCACG chr2R:7681891-7682011 80 2.12e-04 TTGGAGCGAA AAGAGCGC GCAGAGCGTT chrX:18489674-18489794 71 2.43e-04 GGTGCGCTCG CAGAGCGC GAGAAATGAA chr2L:21249023-21249143 64 2.57e-04 CGAGAGACCG AAAAGAGA AGTCATCATC chr3R:29876368-29876488 71 2.57e-04 AGAATCGGCC AAAAGAGA GGAGCAGCGG chr3R:25316201-25316321 34 2.72e-04 TGTCGGAAAA CAAAGAGA GTGCTGGATA chrX:6987245-6987365 109 3.02e-04 CGCAATTCGA GAGAGTGA ACAT chr2R:12586541-12586661 98 3.02e-04 AGTCTTGGAG GAGAGTGA GTGCAAGGCA chrX:4448669-4448789 87 3.02e-04 CTCCGGAGCC AAAAGAGC CTGTGGAACC chr3R:21094396-21094516 105 3.02e-04 GAGTCAAACG GAGAGTGA GAGTGACA chr3R:30460291-30460411 59 3.32e-04 ACCGAGAGGC CAAAGAGC CGAAAACCCA chr2L:21628640-21628760 74 3.32e-04 GTGCAAAATG AAAAGCGA GACCCGTTTA chr3L:21303933-21304053 100 3.32e-04 AAAGTGGCCA AAAAGCGA ATGAGCACCA chr3L:19483133-19483253 111 3.32e-04 GAGCCATACA AAAAGCGA TC chr2R:23722599-23722719 84 3.32e-04 GCTCCATAAA CAAAGAGC CGGGCGAAAA chrX:11791681-11791801 52 3.62e-04 AAGCTGTGAG CAAAGCGA GTCGATGGCA chrX:13411524-13411644 108 3.93e-04 GATCGCAGGG AAAAGCGC AGCTC chr2R:13991804-13991924 86 3.93e-04 CGAAGACATC GAGAGAGG AGAGCGGAGA chr2L:6472010-6472130 48 4.08e-04 ACGTGGTAAC CAAAGCGC AACTGAGCGC chrX:1610106-1610226 1 4.08e-04 . CAAAGCGC TTCTCGTGTA chr2R:6158092-6158212 31 4.24e-04 CTTTGGGCCT GAGAGCGG TTCTTTTGAG chr2R:16386845-16386965 88 4.83e-04 GACTGCAGAA AAgagtgc ggatggcgga chr3L:4167496-4167616 61 5.73e-04 CTCTCCCGAG AAGAGCGG CGATTGTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17032168-17032288 1.5e-05 66_[+2]_46 chr3R:6407675-6407795 1.5e-05 14_[+2]_98 chr3L:18105701-18105821 1.5e-05 31_[+2]_81 chrX:2743744-2743864 1.5e-05 50_[+2]_62 chr3R:4807762-4807882 1.5e-05 77_[+2]_35 chr2R:15610032-15610152 1.5e-05 94_[+2]_18 chr2R:15676633-15676753 1.5e-05 53_[+2]_59 chr2L:501778-501898 1.5e-05 75_[+2]_37 chrX:17651354-17651474 1.5e-05 14_[+2]_98 chr3R:10864104-10864224 1.5e-05 59_[+2]_53 chrX:1623316-1623436 1.5e-05 64_[+2]_48 chr2R:11542148-11542268 3e-05 73_[+2]_39 chr3L:5610724-5610844 3e-05 48_[+2]_64 chr3R:15901411-15901531 3e-05 44_[+2]_68 chrX:18276867-18276987 3e-05 52_[+2]_60 chr3R:13304690-13304810 3e-05 25_[+2]_87 chr3L:881030-881150 3e-05 25_[+2]_87 chr2L:5107788-5107908 3e-05 74_[+2]_38 chr2R:10807373-10807493 3e-05 71_[+2]_41 chrX:14082852-14082972 3e-05 8_[+2]_104 chr3R:10686826-10686946 3e-05 26_[+2]_86 chr3L:22851334-22851454 3e-05 51_[+2]_61 chr2L:21221920-21222040 3e-05 75_[+2]_37 chr3R:13789751-13789871 4.5e-05 39_[+2]_73 chr3R:4738989-4739109 4.5e-05 55_[+2]_57 chr3R:11200148-11200268 4.5e-05 56_[+2]_56 chr3R:18447520-18447640 4.5e-05 110_[+2]_2 chr3L:3257751-3257871 4.5e-05 56_[+2]_56 chr3L:445875-445995 4.5e-05 45_[+2]_67 chrX:8870157-8870277 4.5e-05 62_[+2]_50 chrX:6805648-6805768 4.5e-05 60_[+2]_52 chrX:7285492-7285612 4.5e-05 15_[+2]_97 chr3R:16038087-16038207 6.1e-05 14_[+2]_98 chrX:17710911-17711031 6.1e-05 47_[+2]_65 chr3L:9053571-9053691 6.1e-05 74_[+2]_38 chrX:1385984-1386104 6.1e-05 46_[+2]_66 chr2R:10134759-10134879 7.6e-05 4_[+2]_108 chr2R:14361819-14361939 7.6e-05 49_[+2]_63 chr3L:15510896-15511016 0.00011 26_[+2]_86 chr3R:28324983-28325103 0.00011 17_[+2]_95 chr3R:29215788-29215908 0.00012 101_[+2]_11 chr2R:19825702-19825822 0.00012 78_[+2]_34 chr3R:4394311-4394431 0.00012 30_[+2]_82 chr3R:18912918-18913038 0.00012 13_[+2]_99 chr2L:8411600-8411720 0.00017 64_[+2]_48 chr3R:29064217-29064337 0.00017 69_[+2]_43 chr3L:20733944-20734064 0.00017 20_[+2]_92 chr3R:19286079-19286199 0.00017 20_[+2]_92 chr3L:11715257-11715377 0.00017 78_[+2]_34 chr2R:9006565-9006685 0.00017 95_[+2]_17 chr3L:15684265-15684385 0.0002 83_[+2]_29 chr2R:22644833-22644953 0.0002 22_[+2]_90 chr2L:21162966-21163086 0.0002 61_[+2]_51 chr3L:4692224-4692344 0.0002 28_[+2]_84 chrX:18929263-18929383 0.0002 9_[+2]_103 chr2L:10032562-10032682 0.0002 63_[+2]_49 chr3R:27736447-27736567 0.0002 66_[+2]_46 chr2R:7681891-7682011 0.00021 79_[+2]_33 chrX:18489674-18489794 0.00024 70_[+2]_42 chr2L:21249023-21249143 0.00026 63_[+2]_49 chr3R:29876368-29876488 0.00026 70_[+2]_42 chr3R:25316201-25316321 0.00027 33_[+2]_79 chrX:6987245-6987365 0.0003 108_[+2]_4 chr2R:12586541-12586661 0.0003 97_[+2]_15 chrX:4448669-4448789 0.0003 86_[+2]_26 chr3R:21094396-21094516 0.0003 104_[+2]_8 chr3R:30460291-30460411 0.00033 58_[+2]_54 chr2L:21628640-21628760 0.00033 73_[+2]_39 chr3L:21303933-21304053 0.00033 99_[+2]_13 chr3L:19483133-19483253 0.00033 110_[+2]_2 chr2R:23722599-23722719 0.00033 83_[+2]_29 chrX:11791681-11791801 0.00036 51_[+2]_61 chrX:13411524-13411644 0.00039 107_[+2]_5 chr2R:13991804-13991924 0.00039 85_[+2]_27 chr2L:6472010-6472130 0.00041 47_[+2]_65 chrX:1610106-1610226 0.00041 [+2]_112 chr2R:6158092-6158212 0.00042 30_[+2]_82 chr2R:16386845-16386965 0.00048 87_[+2]_25 chr3L:4167496-4167616 0.00057 60_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGMGM width=8 seqs=79 chr3L:17032168-17032288 ( 67) GAGAGAGA 1 chr3R:6407675-6407795 ( 15) GAGAGAGA 1 chr3L:18105701-18105821 ( 32) GAGAGAGA 1 chrX:2743744-2743864 ( 51) GAGAGAGA 1 chr3R:4807762-4807882 ( 78) GAGAGAGA 1 chr2R:15610032-15610152 ( 95) GAGAGAGA 1 chr2R:15676633-15676753 ( 54) GAGAGAGA 1 chr2L:501778-501898 ( 76) GAGAGAGA 1 chrX:17651354-17651474 ( 15) GAGAGAGA 1 chr3R:10864104-10864224 ( 60) GAGAGAGA 1 chrX:1623316-1623436 ( 65) GAGAGAGA 1 chr2R:11542148-11542268 ( 74) GAGAGAGC 1 chr3L:5610724-5610844 ( 49) GAGAGAGC 1 chr3R:15901411-15901531 ( 45) GAGAGAGC 1 chrX:18276867-18276987 ( 53) GAGAGAGC 1 chr3R:13304690-13304810 ( 26) GAGAGAGC 1 chr3L:881030-881150 ( 26) GAGAGAGC 1 chr2L:5107788-5107908 ( 75) GAGAGAGC 1 chr2R:10807373-10807493 ( 72) GAGAGAGC 1 chrX:14082852-14082972 ( 9) GAGAGAGC 1 chr3R:10686826-10686946 ( 27) GAGAGAGC 1 chr3L:22851334-22851454 ( 52) GAGAGAGC 1 chr2L:21221920-21222040 ( 76) GAGAGAGC 1 chr3R:13789751-13789871 ( 40) GAGAGCGA 1 chr3R:4738989-4739109 ( 56) GAGAGCGA 1 chr3R:11200148-11200268 ( 57) GAGAGCGA 1 chr3R:18447520-18447640 ( 111) GAGAGCGA 1 chr3L:3257751-3257871 ( 57) GAGAGCGA 1 chr3L:445875-445995 ( 46) GAGAGCGA 1 chrX:8870157-8870277 ( 63) GAGAGCGA 1 chrX:6805648-6805768 ( 61) GAGAGCGA 1 chrX:7285492-7285612 ( 16) GAGAGCGA 1 chr3R:16038087-16038207 ( 15) GAGAGCGC 1 chrX:17710911-17711031 ( 48) GAGAGCGC 1 chr3L:9053571-9053691 ( 75) GAGAGCGC 1 chrX:1385984-1386104 ( 47) GAGAGCGC 1 chr2R:10134759-10134879 ( 5) AAGAGAGA 1 chr2R:14361819-14361939 ( 50) AAGAGAGA 1 chr3L:15510896-15511016 ( 27) GAAAGAGA 1 chr3R:28324983-28325103 ( 18) CAGAGAGA 1 chr3R:29215788-29215908 ( 102) AAGAGAGC 1 chr2R:19825702-19825822 ( 79) AAGAGAGC 1 chr3R:4394311-4394431 ( 31) AAGAGAGC 1 chr3R:18912918-18913038 ( 14) AAGAGAGC 1 chr2L:8411600-8411720 ( 65) GAAAGAGC 1 chr3R:29064217-29064337 ( 70) GAAAGAGC 1 chr3L:20733944-20734064 ( 21) GAAAGAGC 1 chr3R:19286079-19286199 ( 21) GAAAGAGC 1 chr3L:11715257-11715377 ( 79) CAGAGAGC 1 chr2R:9006565-9006685 ( 96) AAGAGCGA 1 chr3L:15684265-15684385 ( 84) CAGAGCGA 1 chr2R:22644833-22644953 ( 23) GAAAGCGA 1 chr2L:21162966-21163086 ( 62) CAGAGCGA 1 chr3L:4692224-4692344 ( 29) CAGAGCGA 1 chrX:18929263-18929383 ( 10) CAGAGCGA 1 chr2L:10032562-10032682 ( 64) CAGAGCGA 1 chr3R:27736447-27736567 ( 67) CAGAGCGA 1 chr2R:7681891-7682011 ( 80) AAGAGCGC 1 chrX:18489674-18489794 ( 71) CAGAGCGC 1 chr2L:21249023-21249143 ( 64) AAAAGAGA 1 chr3R:29876368-29876488 ( 71) AAAAGAGA 1 chr3R:25316201-25316321 ( 34) CAAAGAGA 1 chrX:6987245-6987365 ( 109) GAGAGTGA 1 chr2R:12586541-12586661 ( 98) GAGAGTGA 1 chrX:4448669-4448789 ( 87) AAAAGAGC 1 chr3R:21094396-21094516 ( 105) GAGAGTGA 1 chr3R:30460291-30460411 ( 59) CAAAGAGC 1 chr2L:21628640-21628760 ( 74) AAAAGCGA 1 chr3L:21303933-21304053 ( 100) AAAAGCGA 1 chr3L:19483133-19483253 ( 111) AAAAGCGA 1 chr2R:23722599-23722719 ( 84) CAAAGAGC 1 chrX:11791681-11791801 ( 52) CAAAGCGA 1 chrX:13411524-13411644 ( 108) AAAAGCGC 1 chr2R:13991804-13991924 ( 86) GAGAGAGG 1 chr2L:6472010-6472130 ( 48) CAAAGCGC 1 chrX:1610106-1610226 ( 1) CAAAGCGC 1 chr2R:6158092-6158212 ( 31) GAGAGCGG 1 chr2R:16386845-16386965 ( 88) AAGAGTGC 1 chr3L:4167496-4167616 ( 61) AAGAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.94656 E= 6.6e-023 -20 -43 125 -1295 202 -1295 -1295 -1295 -4 -1295 160 -1295 202 -1295 -1295 -1295 -1295 -1295 200 -1295 114 67 -1295 -229 -1295 -1295 200 -1295 111 75 -272 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 6.6e-023 0.215190 0.189873 0.594937 0.000000 1.000000 0.000000 0.000000 0.000000 0.240506 0.000000 0.759494 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.544304 0.405063 0.000000 0.050633 0.000000 0.000000 1.000000 0.000000 0.531646 0.430380 0.037975 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMGM MEME-2 regular expression -------------------------------------------------------------------------------- [GA]A[GA]AG[AC]G[AC] -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCDGTTT MEME-3 width = 8 sites = 31 llr = 293 E-value = 1.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::3:::: pos.-specific C :a7::::: probability G :::3a::: matrix T ::35:aaa bits 2.0 ** **** 1.8 ** **** 1.6 ** **** 1.4 ** **** Relative 1.2 *** **** Entropy 1.0 *** **** (13.6 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCTGTTT consensus TA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8069163-8069283 74 1.50e-05 TCATTCTGTT ACCTGTTT TGCCAATACA chr2R:11194404-11194524 56 1.50e-05 GAATGGTCAA ACCTGTTT GCTCTGCGGA chr3R:29526699-29526819 34 1.50e-05 TAGAGGGGAA ACCTGTTT TTGGCCAACA chrX:7324529-7324649 74 1.50e-05 ATGTTGAAAT ACCTGTTT TGGCTGGATA chr2R:18229829-18229949 6 1.50e-05 CTTTT ACCTGTTT Actcactctc chr2L:12824446-12824566 54 1.50e-05 TCTCAGTGTT ACCTGTTT TGCCCCACTC chr3L:18186899-18187019 14 1.50e-05 AACATGAAAA ACCTGTTt tcgctcttac chr2L:2194448-2194568 86 1.50e-05 AGCATCGTCG ACCTGTTT CAAAACGAAA chr2R:11542148-11542268 2 3.00e-05 A ACCAGTTT CTCAAGTCAG chrX:3833211-3833331 51 3.00e-05 CGGGGGAAGA ACCAGTTT GCCCAGCTTC chr3L:14624510-14624630 58 3.00e-05 CTCGCCTGCA ACCAGTTT GCAGTTGTGC chr3L:22466244-22466364 14 3.00e-05 CTCCGGAGAA ACCAGTTT GCAGCTTACC chrX:5900828-5900948 27 3.00e-05 GGGCTGCGGG ACCAGTTT TCATATCACT chr2L:10613305-10613425 74 3.00e-05 caaAATGAAA ACCAGTTT GGGTTGCCCT chr2L:16477709-16477829 69 3.00e-05 CAATTCTCGA ACCAGTTT GCAGCTGTCT chr3R:27736447-27736567 28 3.00e-05 GAGCTTAGCA ACCAGTTT GGCGGCTCAA chr3R:27220842-27220962 89 4.53e-05 ACCATGTGCA ACCGGTTT GTGCTCCACT chr3R:14917685-14917805 67 4.53e-05 AGAGGATCCA ACCGGTTT GCAAATGGTT chr2R:10807373-10807493 5 4.53e-05 GGAT ACCGGTTT TGTAGAAAGT chr3L:20984301-20984421 47 4.53e-05 GACAGGTCAA ACCGGTTT AATGCCGCTC chr2L:166188-166308 80 4.53e-05 GACGAAGCTA ACCGGTTT TTCGACTTTC chr3L:3537103-3537223 16 4.53e-05 TGCAACTGAA ACCGGTTT TCCATTCACC chr3L:9211431-9211551 36 5.98e-05 CAGGTATATA ACTTGTTT AGCGATCACT chr3L:3242211-3242331 106 5.98e-05 AGGTTCATTA ACTTGTTT GCCCCGC chr3R:25208317-25208437 41 5.98e-05 AAAACGAAAA ACTTGTTT AGCCGCCACA chr3R:25316201-25316321 70 5.98e-05 TCTCAAAACA ACTTGTTT TCAAAGTCTC chr2R:18503487-18503607 97 5.98e-05 TCAACAATCA ACTTGTTT GTCTCTCTTT chr2R:16386845-16386965 45 5.98e-05 GTTGATCCCA ACTTGTTT GCAACCCGTT chrX:2013494-2013614 79 5.98e-05 TGCTGCCAAA ACTTGTTT TCAGCAGCGA chr2R:6158092-6158212 58 8.91e-05 GGAACTGGAA ACTGGTTT TAGTGTTGGG chr3R:9353873-9353993 50 8.91e-05 TGCTGGCGAA ACTGGTTT AGGCCCGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8069163-8069283 1.5e-05 73_[+3]_39 chr2R:11194404-11194524 1.5e-05 55_[+3]_57 chr3R:29526699-29526819 1.5e-05 33_[+3]_79 chrX:7324529-7324649 1.5e-05 73_[+3]_39 chr2R:18229829-18229949 1.5e-05 5_[+3]_107 chr2L:12824446-12824566 1.5e-05 53_[+3]_59 chr3L:18186899-18187019 1.5e-05 13_[+3]_99 chr2L:2194448-2194568 1.5e-05 85_[+3]_27 chr2R:11542148-11542268 3e-05 1_[+3]_111 chrX:3833211-3833331 3e-05 50_[+3]_62 chr3L:14624510-14624630 3e-05 57_[+3]_55 chr3L:22466244-22466364 3e-05 13_[+3]_99 chrX:5900828-5900948 3e-05 26_[+3]_86 chr2L:10613305-10613425 3e-05 73_[+3]_39 chr2L:16477709-16477829 3e-05 68_[+3]_44 chr3R:27736447-27736567 3e-05 27_[+3]_85 chr3R:27220842-27220962 4.5e-05 88_[+3]_24 chr3R:14917685-14917805 4.5e-05 66_[+3]_46 chr2R:10807373-10807493 4.5e-05 4_[+3]_108 chr3L:20984301-20984421 4.5e-05 46_[+3]_66 chr2L:166188-166308 4.5e-05 79_[+3]_33 chr3L:3537103-3537223 4.5e-05 15_[+3]_97 chr3L:9211431-9211551 6e-05 35_[+3]_77 chr3L:3242211-3242331 6e-05 105_[+3]_7 chr3R:25208317-25208437 6e-05 40_[+3]_72 chr3R:25316201-25316321 6e-05 69_[+3]_43 chr2R:18503487-18503607 6e-05 96_[+3]_16 chr2R:16386845-16386965 6e-05 44_[+3]_68 chrX:2013494-2013614 6e-05 78_[+3]_34 chr2R:6158092-6158212 8.9e-05 57_[+3]_55 chr3R:9353873-9353993 8.9e-05 49_[+3]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCDGTTT width=8 seqs=31 chr2R:8069163-8069283 ( 74) ACCTGTTT 1 chr2R:11194404-11194524 ( 56) ACCTGTTT 1 chr3R:29526699-29526819 ( 34) ACCTGTTT 1 chrX:7324529-7324649 ( 74) ACCTGTTT 1 chr2R:18229829-18229949 ( 6) ACCTGTTT 1 chr2L:12824446-12824566 ( 54) ACCTGTTT 1 chr3L:18186899-18187019 ( 14) ACCTGTTT 1 chr2L:2194448-2194568 ( 86) ACCTGTTT 1 chr2R:11542148-11542268 ( 2) ACCAGTTT 1 chrX:3833211-3833331 ( 51) ACCAGTTT 1 chr3L:14624510-14624630 ( 58) ACCAGTTT 1 chr3L:22466244-22466364 ( 14) ACCAGTTT 1 chrX:5900828-5900948 ( 27) ACCAGTTT 1 chr2L:10613305-10613425 ( 74) ACCAGTTT 1 chr2L:16477709-16477829 ( 69) ACCAGTTT 1 chr3R:27736447-27736567 ( 28) ACCAGTTT 1 chr3R:27220842-27220962 ( 89) ACCGGTTT 1 chr3R:14917685-14917805 ( 67) ACCGGTTT 1 chr2R:10807373-10807493 ( 5) ACCGGTTT 1 chr3L:20984301-20984421 ( 47) ACCGGTTT 1 chr2L:166188-166308 ( 80) ACCGGTTT 1 chr3L:3537103-3537223 ( 16) ACCGGTTT 1 chr3L:9211431-9211551 ( 36) ACTTGTTT 1 chr3L:3242211-3242331 ( 106) ACTTGTTT 1 chr3R:25208317-25208437 ( 41) ACTTGTTT 1 chr3R:25316201-25316321 ( 70) ACTTGTTT 1 chr2R:18503487-18503607 ( 97) ACTTGTTT 1 chr2R:16386845-16386965 ( 45) ACTTGTTT 1 chrX:2013494-2013614 ( 79) ACTTGTTT 1 chr2R:6158092-6158212 ( 58) ACTGGTTT 1 chr3R:9353873-9353993 ( 50) ACTGGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.79338 E= 1.5e-008 202 -1160 -1160 -1160 -1160 197 -1160 -1160 -1160 148 -1160 23 7 -1160 4 97 -1160 -1160 200 -1160 -1160 -1160 -1160 201 -1160 -1160 -1160 201 -1160 -1160 -1160 201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.709677 0.000000 0.290323 0.258065 0.000000 0.258065 0.483871 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCDGTTT MEME-3 regular expression -------------------------------------------------------------------------------- AC[CT][TAG]GTTT -------------------------------------------------------------------------------- Time 19.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCGCTCT MEME-4 width = 8 sites = 24 llr = 228 E-value = 4.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 21a:a:a: probability G :1:9:::: matrix T 88:1:a:a bits 2.0 * **** 1.8 * **** 1.6 * **** 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCGCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6987245-6987365 59 1.55e-05 GCCGATGAAA TTCGCTCT CACGAATCTC chrX:13411524-13411644 9 1.55e-05 CCCGATtc ttcgctct ctctctctct chrX:3685654-3685774 30 1.55e-05 CACGCTGCTT TTCGCTCT GCTTCTTCTT chr3L:20733944-20734064 47 1.55e-05 CGCACTGAGG TTCGCTCT CAGCGCTCCC chr2R:24525776-24525896 58 1.55e-05 ggctcttcct ttcgctct TTTGTACTTT chr2R:14965511-14965631 42 1.55e-05 AAGTTGCGCA TTCGCTCT CCTTTGGAgc chr3L:8056416-8056536 31 1.55e-05 AGATCCGACT TTCGCTCT CCGCTCTCTT chr2R:18231211-18231331 73 1.55e-05 ttcctctctc ttcgctct ccctctctct chr3L:17500342-17500462 30 1.55e-05 CCGCCGCTCT TTCGCTCT GGGATGCACT chr2L:16496623-16496743 27 1.55e-05 TCTCCTCCTC TTCGCTCT GCTTGCGGCG chr3R:6157227-6157347 93 1.55e-05 ctttctctTA TTCGCTCT CCGGGCCACT chr3R:14730820-14730940 67 1.55e-05 GACAGCGAGC TTCGCTCT CTGCGTAGCC chr3L:21098794-21098914 67 3.15e-05 TGCCCATCTC CTCGCTCT GCCTCACGCA chr3L:881030-881150 68 3.15e-05 TCTTTGCAAG CTCGCTCT TCGCTGCTCT chrX:15302497-15302617 67 3.15e-05 TTCTTCTCCG CTCGCTCT CGTTCTTTAG chrX:7697501-7697621 57 6.32e-05 TTCTCTTTGC TGCGCTCT TGCGTGAGCA chr2L:7084614-7084734 61 6.32e-05 ACAAAAAGCT TGCGCTCT GCTCGCCTTT chr3R:17681710-17681830 51 6.32e-05 tgagctctgc tccgctct cgctccTTTG chr2R:5893675-5893795 63 6.32e-05 TGGGGCTCTC TCCGCTCT GCCTTGTCAT chr3L:22851334-22851454 69 6.32e-05 CTCCCCAAAT TGCGCTCT TCGCTGCCCA chr2L:21221920-21222040 21 6.32e-05 TTAACAATGC TCCGCTCT GGAGAGCGTG chr2L:12288641-12288761 70 7.85e-05 ctcttgctct ttctctct gtctgtgtgt chr2R:18514911-18515031 28 7.85e-05 CTTCCTGTCC Ttctctct cgctctctct chrX:12007706-12007826 45 1.27e-04 ACTATCATTC ctctctct ccctctctct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6987245-6987365 1.5e-05 58_[+4]_54 chrX:13411524-13411644 1.5e-05 8_[+4]_104 chrX:3685654-3685774 1.5e-05 29_[+4]_83 chr3L:20733944-20734064 1.5e-05 46_[+4]_66 chr2R:24525776-24525896 1.5e-05 57_[+4]_55 chr2R:14965511-14965631 1.5e-05 41_[+4]_71 chr3L:8056416-8056536 1.5e-05 30_[+4]_82 chr2R:18231211-18231331 1.5e-05 72_[+4]_40 chr3L:17500342-17500462 1.5e-05 29_[+4]_83 chr2L:16496623-16496743 1.5e-05 26_[+4]_86 chr3R:6157227-6157347 1.5e-05 92_[+4]_20 chr3R:14730820-14730940 1.5e-05 66_[+4]_46 chr3L:21098794-21098914 3.1e-05 66_[+4]_46 chr3L:881030-881150 3.1e-05 67_[+4]_45 chrX:15302497-15302617 3.1e-05 66_[+4]_46 chrX:7697501-7697621 6.3e-05 56_[+4]_56 chr2L:7084614-7084734 6.3e-05 60_[+4]_52 chr3R:17681710-17681830 6.3e-05 50_[+4]_62 chr2R:5893675-5893795 6.3e-05 62_[+4]_50 chr3L:22851334-22851454 6.3e-05 68_[+4]_44 chr2L:21221920-21222040 6.3e-05 20_[+4]_92 chr2L:12288641-12288761 7.8e-05 69_[+4]_43 chr2R:18514911-18515031 7.8e-05 27_[+4]_85 chrX:12007706-12007826 0.00013 44_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCGCTCT width=8 seqs=24 chrX:6987245-6987365 ( 59) TTCGCTCT 1 chrX:13411524-13411644 ( 9) TTCGCTCT 1 chrX:3685654-3685774 ( 30) TTCGCTCT 1 chr3L:20733944-20734064 ( 47) TTCGCTCT 1 chr2R:24525776-24525896 ( 58) TTCGCTCT 1 chr2R:14965511-14965631 ( 42) TTCGCTCT 1 chr3L:8056416-8056536 ( 31) TTCGCTCT 1 chr2R:18231211-18231331 ( 73) TTCGCTCT 1 chr3L:17500342-17500462 ( 30) TTCGCTCT 1 chr2L:16496623-16496743 ( 27) TTCGCTCT 1 chr3R:6157227-6157347 ( 93) TTCGCTCT 1 chr3R:14730820-14730940 ( 67) TTCGCTCT 1 chr3L:21098794-21098914 ( 67) CTCGCTCT 1 chr3L:881030-881150 ( 68) CTCGCTCT 1 chrX:15302497-15302617 ( 67) CTCGCTCT 1 chrX:7697501-7697621 ( 57) TGCGCTCT 1 chr2L:7084614-7084734 ( 61) TGCGCTCT 1 chr3R:17681710-17681830 ( 51) TCCGCTCT 1 chr2R:5893675-5893795 ( 63) TCCGCTCT 1 chr3L:22851334-22851454 ( 69) TGCGCTCT 1 chr2L:21221920-21222040 ( 21) TCCGCTCT 1 chr2L:12288641-12288761 ( 70) TTCTCTCT 1 chr2R:18514911-18515031 ( 28) TTCTCTCT 1 chrX:12007706-12007826 ( 45) CTCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 4.2e-001 -1123 -61 -1123 175 -1123 -103 -100 160 -1123 197 -1123 -1123 -1123 -1123 180 -98 -1123 197 -1123 -1123 -1123 -1123 -1123 201 -1123 197 -1123 -1123 -1123 -1123 -1123 201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 4.2e-001 0.000000 0.166667 0.000000 0.833333 0.000000 0.125000 0.125000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGCTCT MEME-4 regular expression -------------------------------------------------------------------------------- TTCGCTCT -------------------------------------------------------------------------------- Time 25.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMVAAA MEME-5 width = 8 sites = 21 llr = 197 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa43aaa pos.-specific C :::63::: probability G ::::4::: matrix T :::::::: bits 2.0 *** *** 1.8 *** *** 1.6 *** *** 1.4 *** *** Relative 1.2 *** *** Entropy 1.0 **** *** (13.5 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACGAAA consensus AA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25208317-25208437 32 1.45e-05 GCGCTCTCAA AAACGAAA AACTTGTTTA chr2L:873847-873967 75 1.45e-05 GACCGAACGA AAACGAAA TCTGAGGCAC chr2L:9946221-9946341 97 1.45e-05 GAGGAGATGG AAACGAAA GCAGCAGCTG chrX:6805648-6805768 30 1.45e-05 CATTTTCCAG AAACGAAA CTCTGAAACG chr2L:2194448-2194568 96 1.45e-05 ACCTGTTTCA AAACGAAA CAAATACATA chr3L:4692224-4692344 55 2.88e-05 CTAAGTCCGA AAACAAAA CTTCGAGTGA chr2L:19454156-19454276 72 2.88e-05 TGAATAGTGC AAACAAAA TATAAAGATT chr2L:10613305-10613425 61 2.88e-05 taacaataac aaacaaAA TGAAAACCAG chr3L:3537103-3537223 74 2.88e-05 GGCAGCAGGC AAACAAAA TGTTTGCAGT chr3R:29064217-29064337 100 4.29e-05 gagagGGGCA AAAAGAAA GTCAACAGTC chr3R:19286079-19286199 84 4.29e-05 ACGCAACTGC AAAAGAAA CAACCGGCCA chr3R:25783133-25783253 82 4.29e-05 ctctGAGAGA AAAAGAAA TTCTTCTCTT chr3R:29215788-29215908 53 7.15e-05 GAACGACCGA AAAAAAAA GAAGGAAAAG chr3R:30460291-30460411 42 7.15e-05 ACAAGCGCCC AAAAAAAA CCGAGAGGCC chrX:16647824-16647944 69 7.15e-05 aaaaacacga aaaaaaAA CGCTGCCAAA chr3R:15901411-15901531 59 7.15e-05 GAGCCCGCCA AAACCAAA ACGCTGTGGA chr3L:4349477-4349597 35 7.15e-05 AGCCAGCAAG AAACCAAA TCGAAACCCG chrX:17710911-17711031 97 7.15e-05 GCATCCACCC AAACCAAA TCCACAAAAT chrX:4214512-4214632 90 8.58e-05 AAGCGGGCTA AAAACAAA CAGATTCCAT chrX:1385984-1386104 29 8.58e-05 CAAAGAGCCG AAAACAAA GTCTTCGCCA chr3R:25316201-25316321 110 8.58e-05 CATATAGACC AAAACAAA CGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25208317-25208437 1.5e-05 31_[+5]_81 chr2L:873847-873967 1.5e-05 74_[+5]_38 chr2L:9946221-9946341 1.5e-05 96_[+5]_16 chrX:6805648-6805768 1.5e-05 29_[+5]_83 chr2L:2194448-2194568 1.5e-05 95_[+5]_17 chr3L:4692224-4692344 2.9e-05 54_[+5]_58 chr2L:19454156-19454276 2.9e-05 71_[+5]_41 chr2L:10613305-10613425 2.9e-05 60_[+5]_52 chr3L:3537103-3537223 2.9e-05 73_[+5]_39 chr3R:29064217-29064337 4.3e-05 99_[+5]_13 chr3R:19286079-19286199 4.3e-05 83_[+5]_29 chr3R:25783133-25783253 4.3e-05 81_[+5]_31 chr3R:29215788-29215908 7.2e-05 52_[+5]_60 chr3R:30460291-30460411 7.2e-05 41_[+5]_71 chrX:16647824-16647944 7.2e-05 68_[+5]_44 chr3R:15901411-15901531 7.2e-05 58_[+5]_54 chr3L:4349477-4349597 7.2e-05 34_[+5]_78 chrX:17710911-17711031 7.2e-05 96_[+5]_16 chrX:4214512-4214632 8.6e-05 89_[+5]_23 chrX:1385984-1386104 8.6e-05 28_[+5]_84 chr3R:25316201-25316321 8.6e-05 109_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMVAAA width=8 seqs=21 chr3R:25208317-25208437 ( 32) AAACGAAA 1 chr2L:873847-873967 ( 75) AAACGAAA 1 chr2L:9946221-9946341 ( 97) AAACGAAA 1 chrX:6805648-6805768 ( 30) AAACGAAA 1 chr2L:2194448-2194568 ( 96) AAACGAAA 1 chr3L:4692224-4692344 ( 55) AAACAAAA 1 chr2L:19454156-19454276 ( 72) AAACAAAA 1 chr2L:10613305-10613425 ( 61) AAACAAAA 1 chr3L:3537103-3537223 ( 74) AAACAAAA 1 chr3R:29064217-29064337 ( 100) AAAAGAAA 1 chr3R:19286079-19286199 ( 84) AAAAGAAA 1 chr3R:25783133-25783253 ( 82) AAAAGAAA 1 chr3R:29215788-29215908 ( 53) AAAAAAAA 1 chr3R:30460291-30460411 ( 42) AAAAAAAA 1 chrX:16647824-16647944 ( 69) AAAAAAAA 1 chr3R:15901411-15901531 ( 59) AAACCAAA 1 chr3L:4349477-4349597 ( 35) AAACCAAA 1 chrX:17710911-17711031 ( 97) AAACCAAA 1 chrX:4214512-4214632 ( 90) AAAACAAA 1 chrX:1385984-1386104 ( 29) AAAACAAA 1 chr3R:25316201-25316321 ( 110) AAAACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 1.5e+002 202 -1104 -1104 -1104 202 -1104 -1104 -1104 202 -1104 -1104 -1104 80 116 -1104 -1104 43 16 60 -1104 202 -1104 -1104 -1104 202 -1104 -1104 -1104 202 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.5e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.333333 0.285714 0.380952 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMVAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAA[CA][GAC]AAA -------------------------------------------------------------------------------- Time 31.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21221920-21222040 2.09e-03 20_[+4(6.32e-05)]_47_[+2(3.00e-05)]_\ 37 chr3L:22851334-22851454 2.15e-03 51_[+2(3.00e-05)]_9_[+4(6.32e-05)]_\ 44 chr3R:29876368-29876488 4.29e-02 120 chr3L:3537103-3537223 5.61e-04 15_[+3(4.53e-05)]_50_[+5(2.88e-05)]_\ 39 chr3R:28324983-28325103 3.28e-01 120 chrX:2013494-2013614 3.03e-03 78_[+3(5.98e-05)]_34 chr2L:166188-166308 2.77e-01 79_[+3(4.53e-05)]_33 chr3L:8643941-8644061 2.06e-01 120 chr3R:14730820-14730940 9.36e-04 66_[+4(1.55e-05)]_9_[+1(3.10e-05)]_\ 29 chr2L:1163903-1164023 1.61e-03 43_[+1(1.57e-05)]_69 chr2R:7477765-7477885 3.38e-01 120 chr2L:2194448-2194568 5.08e-04 5_[+5(7.15e-05)]_72_[+3(1.50e-05)]_\ 2_[+5(1.45e-05)]_17 chr3R:6157227-6157347 2.04e-03 60_[+1(1.57e-05)]_[+1(1.57e-05)]_\ [+1(1.57e-05)]_8_[+4(1.55e-05)]_20 chrX:1623316-1623436 1.39e-01 22_[+2(1.48e-05)]_2_[+2(1.48e-05)]_\ 8_[+2(1.48e-05)]_[+2(1.48e-05)]_[+2(1.48e-05)]_48 chr3L:20984301-20984421 4.62e-02 46_[+3(4.53e-05)]_66 chr2R:10581536-10581656 6.65e-01 120 chr3L:18186899-18187019 9.53e-06 13_[+3(1.50e-05)]_34_[+1(6.35e-05)]_\ 38_[+1(1.57e-05)]_[+1(1.57e-05)]_3 chr3R:21094396-21094516 1.13e-03 20_[+1(3.10e-05)]_92 chr2R:5999540-5999660 1.18e-01 120 chr2R:23722599-23722719 6.55e-03 120 chr2R:17806768-17806888 5.57e-01 120 chr2R:7681891-7682011 1.44e-03 7_[+1(6.35e-05)]_105 chr3R:7760900-7761020 8.69e-01 120 chrX:6725241-6725361 6.17e-01 120 chr2R:24787710-24787830 3.15e-01 120 chr3R:14565557-14565677 8.56e-01 120 chr2L:21249023-21249143 2.11e-01 120 chr3R:5555026-5555146 2.62e-01 120 chr2L:9213757-9213877 2.07e-01 120 chr3R:29283862-29283982 9.28e-01 120 chr2R:10278969-10279089 6.34e-01 120 chr3R:27736447-27736567 1.00e-02 27_[+3(3.00e-05)]_85 chr2R:16386845-16386965 2.88e-03 44_[+3(5.98e-05)]_68 chr2R:18406821-18406941 1.79e-02 53_[+1(3.10e-05)]_59 chr3L:12543440-12543560 6.89e-01 120 chr3R:10864104-10864224 5.70e-02 25_[+2(4.53e-05)]_16_[+2(1.48e-05)]_\ [+2(1.48e-05)]_55 chr3R:24593876-24593996 1.53e-01 120 chr3R:13258822-13258942 6.79e-03 43_[+1(1.57e-05)]_9_[+1(1.57e-05)]_\ 29_[+1(1.57e-05)]_[+1(3.10e-05)]_7 chrX:1841455-1841575 2.31e-02 120 chrX:16835514-16835634 5.93e-02 110_[+4(6.32e-05)]_2 chr2L:16496623-16496743 2.39e-03 26_[+4(1.55e-05)]_14_[+1(7.95e-05)]_\ 64 chrX:12745228-12745348 2.00e-01 120 chr2R:13840032-13840152 5.83e-01 120 chr2R:7454486-7454606 4.43e-01 120 chr3L:17500342-17500462 7.87e-04 29_[+4(1.55e-05)]_12_[+1(3.10e-05)]_\ 63 chrX:14200095-14200215 8.52e-01 120 chr3R:18912918-18913038 9.91e-03 120 chrX:7285492-7285612 5.45e-04 15_[+2(4.53e-05)]_45_[+1(3.10e-05)]_\ 44 chr2R:18231211-18231331 3.83e-04 72_[+4(1.55e-05)]_2_[+1(1.57e-05)]_\ 30 chr3L:9733827-9733947 4.75e-01 120 chr3R:10686826-10686946 1.34e-01 26_[+2(3.00e-05)]_86 chr2R:18503487-18503607 6.62e-04 96_[+3(5.98e-05)]_2_[+1(3.10e-05)]_\ 6 chr3R:25316201-25316321 3.28e-03 29_[+5(8.58e-05)]_32_[+3(5.98e-05)]_\ 32_[+5(8.58e-05)]_3 chr2R:12942632-12942752 1.51e-01 120 chrX:1385984-1386104 3.65e-02 28_[+5(8.58e-05)]_10_[+2(6.10e-05)]_\ 66 chr3R:25783133-25783253 1.73e-05 31_[+1(1.57e-05)]_2_[+1(1.57e-05)]_\ [+1(1.57e-05)]_[+1(1.57e-05)]_[+1(1.57e-05)]_8_[+5(4.29e-05)]_31 chr3R:8094037-8094157 1.68e-01 120 chr3R:11985002-11985122 8.67e-01 120 chr2L:16477709-16477829 9.96e-02 68_[+3(3.00e-05)]_44 chr2L:12824446-12824566 2.98e-03 53_[+3(1.50e-05)]_59 chrX:4214512-4214632 1.06e-01 89_[+5(8.58e-05)]_23 chr3R:27636866-27636986 7.72e-01 120 chr2R:18229829-18229949 7.84e-05 5_[+3(1.50e-05)]_5_[+1(1.57e-05)]_\ 16_[+1(1.57e-05)]_70 chr2L:10613305-10613425 6.74e-03 60_[+5(2.88e-05)]_5_[+3(3.00e-05)]_\ 39 chr3L:19483133-19483253 1.22e-01 120 chr3R:9353873-9353993 2.42e-03 49_[+3(8.91e-05)]_17_[+1(7.95e-05)]_\ 38 chr2R:9006565-9006685 3.86e-01 120 chr2R:14361819-14361939 5.03e-02 49_[+2(7.56e-05)]_63 chr3L:17421083-17421203 6.18e-01 120 chr2L:17387801-17387921 5.27e-01 120 chrX:17651354-17651474 4.20e-02 14_[+2(1.48e-05)]_46_[+2(3.00e-05)]_\ 44 chrX:11791681-11791801 2.33e-03 102_[+1(3.10e-05)]_10 chr2R:18514911-18515031 1.02e-03 27_[+4(7.85e-05)]_2_[+1(1.57e-05)]_\ 2_[+1(1.57e-05)]_19_[+1(3.10e-05)]_38 chr2R:17159189-17159309 4.30e-01 120 chr2L:501778-501898 1.40e-01 59_[+2(1.48e-05)]_4_[+2(1.48e-05)]_\ 41 chrX:14082852-14082972 5.87e-02 8_[+2(3.00e-05)]_104 chr2R:16220043-16220163 3.34e-01 120 chr2R:5893675-5893795 6.17e-04 44_[+1(3.10e-05)]_5_[+1(4.72e-05)]_\ 55 chr2R:10807373-10807493 1.13e-02 4_[+3(4.53e-05)]_32_[+2(3.00e-05)]_\ 19_[+2(3.00e-05)]_41 chr3L:4167496-4167616 2.43e-02 48_[+1(4.72e-05)]_64 chr2L:5107788-5107908 7.49e-02 52_[+2(7.56e-05)]_14_[+2(3.00e-05)]_\ 7_[+2(3.00e-05)]_23 chrX:6805648-6805768 5.62e-03 29_[+5(1.45e-05)]_23_[+2(4.53e-05)]_\ 7_[+2(4.53e-05)]_37 chrX:7324529-7324649 3.13e-02 73_[+3(1.50e-05)]_39 chrX:15302497-15302617 1.56e-02 66_[+4(3.15e-05)]_46 chr3R:23132433-23132553 1.90e-01 120 chr2R:23643223-23643343 6.43e-01 120 chrX:5900828-5900948 9.54e-02 26_[+3(3.00e-05)]_86 chr3L:14515490-14515610 1.09e-01 120 chr3R:27075746-27075866 3.79e-01 120 chr3L:21709914-21710034 3.73e-01 120 chr3R:29526699-29526819 2.02e-02 33_[+3(1.50e-05)]_79 chr3L:9053571-9053691 3.25e-01 74_[+2(6.10e-05)]_38 chr3L:11715257-11715377 9.04e-04 95_[+1(1.57e-05)]_17 chr3R:14917685-14917805 2.06e-01 66_[+3(4.53e-05)]_46 chr3R:31944964-31945084 9.50e-02 120 chr2L:8334875-8334995 8.80e-01 120 chrX:15569147-15569267 6.83e-01 120 chr3L:22466244-22466364 2.05e-03 13_[+3(3.00e-05)]_99 chr2R:15676633-15676753 2.38e-03 51_[+2(1.48e-05)]_61 chr2L:12423370-12423490 4.72e-01 120 chr2R:15610032-15610152 4.81e-04 48_[+4(6.32e-05)]_38_[+2(1.48e-05)]_\ 18 chr2R:11194404-11194524 6.19e-03 55_[+3(1.50e-05)]_57 chrX:1562494-1562614 2.34e-04 32_[+4(1.55e-05)]_80 chr3L:8057618-8057738 9.19e-01 120 chr2L:9946221-9946341 2.47e-02 96_[+5(1.45e-05)]_16 chr3R:21604696-21604816 1.60e-01 52_[+1(7.95e-05)]_60 chrX:8870157-8870277 3.31e-01 62_[+2(4.53e-05)]_50 chrX:4448669-4448789 1.87e-02 120 chr3L:445875-445995 3.15e-02 45_[+2(4.53e-05)]_67 chr2R:23419559-23419679 8.51e-01 120 chr2R:5773137-5773257 1.86e-02 50_[+1(1.57e-05)]_[+1(1.57e-05)]_\ [+1(1.57e-05)]_46 chr2R:18291661-18291781 6.95e-01 120 chr2L:873847-873967 7.66e-02 74_[+5(1.45e-05)]_38 chr2L:9506709-9506829 6.60e-01 120 chr2L:16754260-16754380 5.25e-01 120 chrX:2043762-2043882 5.56e-01 120 chrX:6991388-6991508 4.62e-01 120 chr2L:10032562-10032682 1.00e-03 7_[+3(4.53e-05)]_105 chr3L:881030-881150 4.52e-04 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chrX:3833211-3833331 3.28e-02 50_[+3(3.00e-05)]_62 chr3L:20733944-20734064 1.56e-04 46_[+4(1.55e-05)]_66 chr3R:23258638-23258758 3.86e-02 39_[+3(8.91e-05)]_73 chr3R:8316876-8316996 9.85e-01 120 chr2R:8293602-8293722 7.50e-02 120 chr2R:7726430-7726550 7.45e-02 120 chr3R:29935851-29935971 5.26e-01 120 chr2L:14207604-14207724 5.54e-01 120 chr3L:5610724-5610844 8.97e-04 48_[+2(3.00e-05)]_44_[+1(7.95e-05)]_\ 12 chrX:16647824-16647944 1.78e-01 67_[+5(7.15e-05)]_45 chr3R:26098650-26098770 5.61e-01 120 chr2L:13960565-13960685 6.66e-01 120 chr3R:18507833-18507953 7.22e-01 120 chr2L:429601-429721 1.74e-01 120 chr3R:6407675-6407795 1.56e-01 14_[+2(1.48e-05)]_36_[+2(7.56e-05)]_\ 54 chr3R:9534737-9534857 1.37e-03 24_[+1(7.95e-05)]_38_[+4(1.55e-05)]_\ 17_[+1(3.10e-05)]_17 chr3L:17579790-17579910 2.90e-01 120 chr3R:29095564-29095684 3.99e-01 120 chrX:7697501-7697621 3.27e-03 56_[+4(6.32e-05)]_56 chr3R:29064217-29064337 3.94e-02 65_[+5(4.29e-05)]_26_[+5(4.29e-05)]_\ 13 chrX:18489674-18489794 1.22e-02 120 chr2R:7086142-7086262 3.37e-01 120 chrX:3685654-3685774 1.76e-02 29_[+4(1.55e-05)]_83 chr2R:12586541-12586661 6.36e-01 120 chr2R:10134759-10134879 2.05e-01 4_[+2(7.56e-05)]_108 chr3R:8876380-8876500 8.40e-01 120 chr3R:9160475-9160595 2.54e-03 9_[+1(1.57e-05)]_16_[+1(3.10e-05)]_\ 79 chr3R:11200148-11200268 1.04e-01 56_[+2(4.53e-05)]_56 chrX:19701707-19701827 8.26e-01 120 chr2R:13991804-13991924 1.57e-04 15_[+4(1.55e-05)]_97 chr2R:8069163-8069283 8.92e-02 73_[+3(1.50e-05)]_39 chr2R:15011332-15011452 4.06e-01 120 chrX:18272867-18272987 4.09e-01 120 chr3L:17032168-17032288 8.11e-03 54_[+2(1.48e-05)]_[+2(1.48e-05)]_\ [+2(3.00e-05)]_42 chr3L:18768941-18769061 4.11e-03 120 chr2R:6158092-6158212 3.09e-02 57_[+3(8.91e-05)]_55 chr3R:18249374-18249494 3.75e-02 120 chr3R:31504984-31505104 1.91e-01 120 chr2L:21162966-21163086 2.20e-02 120 chr3R:21822319-21822439 8.40e-01 120 chrX:12747944-12748064 2.47e-01 120 chr3L:15305407-15305527 8.58e-02 120 chr3R:4738989-4739109 1.02e-01 55_[+2(4.53e-05)]_7_[+2(7.56e-05)]_\ 42 chr2L:8411600-8411720 3.31e-02 120 chrX:13411524-13411644 1.59e-04 8_[+4(1.55e-05)]_4_[+1(1.57e-05)]_\ [+1(7.95e-05)]_84 chr2R:17479002-17479122 8.93e-01 120 chrX:493351-493471 6.24e-01 120 chr3R:30460291-30460411 7.24e-02 41_[+5(7.15e-05)]_71 chr3R:29215788-29215908 3.84e-03 51_[+5(7.15e-05)]_61 chr2L:4726149-4726269 5.42e-01 120 chr2R:11542148-11542268 1.46e-04 1_[+3(3.00e-05)]_37_[+2(7.56e-05)]_\ 19_[+2(3.00e-05)]_39 chr3L:4554375-4554495 6.48e-01 120 chr3R:13789751-13789871 1.15e-02 39_[+2(4.53e-05)]_73 chr3R:9501920-9502040 4.55e-01 120 chr3R:4236670-4236790 4.38e-01 120 chr3R:21852046-21852166 3.10e-01 120 chrX:1610106-1610226 6.48e-04 62_[+1(1.57e-05)]_50 chr2R:22644833-22644953 2.36e-03 18_[+5(4.29e-05)]_94 chr3R:27130747-27130867 6.98e-01 120 chr2R:6562915-6563035 1.62e-01 120 chrX:494291-494411 2.30e-01 120 chr2R:7493065-7493185 4.82e-01 120 chr3L:3253782-3253902 1.06e-01 120 chr3R:24799596-24799716 8.92e-01 120 chr2L:6472010-6472130 6.17e-02 120 chr3R:5247018-5247138 3.59e-01 120 chr3L:3242211-3242331 1.16e-01 105_[+3(5.98e-05)]_7 chr3L:8819501-8819621 9.90e-01 120 chr3L:9211431-9211551 5.99e-02 35_[+3(5.98e-05)]_77 chr3R:16038087-16038207 2.33e-01 14_[+2(6.10e-05)]_98 chrX:12007706-12007826 1.41e-02 44_[+1(1.57e-05)]_2_[+1(1.57e-05)]_\ 58 chrX:6987245-6987365 2.55e-04 58_[+4(1.55e-05)]_10_[+1(1.57e-05)]_\ 36 chr3L:15684265-15684385 7.03e-02 120 chr3L:2824860-2824980 1.33e-02 8_[+1(1.57e-05)]_24_[+1(1.57e-05)]_\ 72 chr3R:28677848-28677968 1.09e-01 120 chr3R:23048174-23048294 6.65e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************