******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dek.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:16856820-16856940 1.0000 120 chr3R:17617503-17617623 1.0000 120 chr2R:8665392-8665512 1.0000 120 chr3R:29503670-29503790 1.0000 120 chr3R:29904183-29904303 1.0000 120 chr3R:22794092-22794212 1.0000 120 chr2R:7463190-7463310 1.0000 120 chr3R:8980045-8980165 1.0000 120 chr2R:17391946-17392066 1.0000 120 chr2R:18435179-18435299 1.0000 120 chr2R:23072355-23072475 1.0000 120 chr3R:24544438-24544558 1.0000 120 chr2R:19728993-19729113 1.0000 120 chr3R:9214361-9214481 1.0000 120 chr3R:23722096-23722216 1.0000 120 chr2L:9089843-9089963 1.0000 120 chr2R:13935298-13935418 1.0000 120 chr2R:16589188-16589308 1.0000 120 chr3R:4905902-4906022 1.0000 120 chr3L:16146635-16146755 1.0000 120 chr3L:11556873-11556993 1.0000 120 chr2L:18441391-18441511 1.0000 120 chr2R:11652488-11652608 1.0000 120 chr3R:16978054-16978174 1.0000 120 chr3R:9784409-9784529 1.0000 120 chr2L:6622707-6622827 1.0000 120 chr2R:6219997-6220117 1.0000 120 chr2R:16849552-16849672 1.0000 120 chr3L:8718671-8718791 1.0000 120 chr2R:13261851-13261971 1.0000 120 chr3L:10893574-10893694 1.0000 120 chr2R:23907329-23907449 1.0000 120 chr2L:5365874-5365994 1.0000 120 chr2R:10475978-10476098 1.0000 120 chrX:13320805-13320925 1.0000 120 chr2L:14011781-14011901 1.0000 120 chr3L:4603611-4603731 1.0000 120 chr2R:15698134-15698254 1.0000 120 chr2L:13203410-13203530 1.0000 120 chr3L:17791618-17791738 1.0000 120 chr2R:8759623-8759743 1.0000 120 chr3L:3382006-3382126 1.0000 120 chr3L:1188911-1189031 1.0000 120 chrX:10899368-10899488 1.0000 120 chr2L:1987897-1988017 1.0000 120 chrX:14953954-14954074 1.0000 120 chrX:22488407-22488527 1.0000 120 chr2L:18119824-18119944 1.0000 120 chr2L:11199213-11199333 1.0000 120 chr3L:1151789-1151909 1.0000 120 chr2L:8010814-8010934 1.0000 120 chr2L:6971845-6971965 1.0000 120 chr2R:17098571-17098691 1.0000 120 chr2R:12755605-12755725 1.0000 120 chrX:20434649-20434769 1.0000 120 chr3L:19092505-19092625 1.0000 120 chr2L:8461985-8462105 1.0000 120 chr3R:22726618-22726738 1.0000 120 chr3R:21612965-21613085 1.0000 120 chr3R:26494394-26494514 1.0000 120 chr3R:24865029-24865149 1.0000 120 chr2L:7443084-7443204 1.0000 120 chr2R:25253192-25253312 1.0000 120 chr2R:24337630-24337750 1.0000 120 chr2L:19958562-19958682 1.0000 120 chrX:5095771-5095891 1.0000 120 chr3R:19508740-19508860 1.0000 120 chrX:12547173-12547293 1.0000 120 chr2L:3092656-3092776 1.0000 120 chr3L:11580069-11580189 1.0000 120 chr3L:8060495-8060615 1.0000 120 chr3L:11511437-11511557 1.0000 120 chr3R:21134033-21134153 1.0000 120 chr3R:18438998-18439118 1.0000 120 chr3R:11665913-11666033 1.0000 120 chr3R:28327418-28327538 1.0000 120 chr2R:16219453-16219573 1.0000 120 chr2R:14305273-14305393 1.0000 120 chrX:7691507-7691627 1.0000 120 chr3L:17465818-17465938 1.0000 120 chr3L:13903416-13903536 1.0000 120 chr3R:26105986-26106106 1.0000 120 chr2L:4456856-4456976 1.0000 120 chr3R:9872196-9872316 1.0000 120 chr3L:14671684-14671804 1.0000 120 chrX:18366668-18366788 1.0000 120 chr3R:9334814-9334934 1.0000 120 chr2L:7492088-7492208 1.0000 120 chr3R:15117849-15117969 1.0000 120 chrX:8533665-8533785 1.0000 120 chr3R:25245616-25245736 1.0000 120 chr2R:16850241-16850361 1.0000 120 chr3L:18833440-18833560 1.0000 120 chr2L:18484738-18484858 1.0000 120 chrX:15120238-15120358 1.0000 120 chr2L:3755283-3755403 1.0000 120 chr2L:2872706-2872826 1.0000 120 chrX:17696791-17696911 1.0000 120 chr2R:13909076-13909196 1.0000 120 chr3L:16865132-16865252 1.0000 120 chr2R:11633010-11633130 1.0000 120 chr2L:12542131-12542251 1.0000 120 chrX:6973487-6973607 1.0000 120 chr2R:11178529-11178649 1.0000 120 chr2L:7434930-7435050 1.0000 120 chr2L:1837823-1837943 1.0000 120 chr3L:19088018-19088138 1.0000 120 chr3L:607026-607146 1.0000 120 chr2L:5771315-5771435 1.0000 120 chr2L:18859276-18859396 1.0000 120 chr2R:23615214-23615334 1.0000 120 chr2L:8478076-8478196 1.0000 120 chr3R:20948619-20948739 1.0000 120 chr2R:13996745-13996865 1.0000 120 chrX:9283110-9283230 1.0000 120 chr3R:17526205-17526325 1.0000 120 chr2L:15061467-15061587 1.0000 120 chr3R:23228711-23228831 1.0000 120 chr3R:15804081-15804201 1.0000 120 chr3R:10677647-10677767 1.0000 120 chrX:5084929-5085049 1.0000 120 chr3R:8938569-8938689 1.0000 120 chr2R:8572678-8572798 1.0000 120 chr3L:15591350-15591470 1.0000 120 chr2L:8071782-8071902 1.0000 120 chr3R:12630414-12630534 1.0000 120 chr3L:22471736-22471856 1.0000 120 chr3R:10139838-10139958 1.0000 120 chr2R:24139292-24139412 1.0000 120 chr2L:10303969-10304089 1.0000 120 chr3R:23820362-23820482 1.0000 120 chr2R:7407841-7407961 1.0000 120 chr2R:8600005-8600125 1.0000 120 chrX:13109852-13109972 1.0000 120 chr3R:26536134-26536254 1.0000 120 chr2R:17085683-17085803 1.0000 120 chr3L:13411127-13411247 1.0000 120 chr2L:14252604-14252724 1.0000 120 chr2L:9564651-9564771 1.0000 120 chr2R:15155066-15155186 1.0000 120 chr3L:11708400-11708520 1.0000 120 chr2L:6070907-6071027 1.0000 120 chrX:19166413-19166533 1.0000 120 chr3L:21321920-21322040 1.0000 120 chrX:19964318-19964438 1.0000 120 chr2R:14247583-14247703 1.0000 120 chr3L:20518202-20518322 1.0000 120 chr3R:5746784-5746904 1.0000 120 chr3L:8604418-8604538 1.0000 120 chr2L:12520522-12520642 1.0000 120 chr3L:2845347-2845467 1.0000 120 chr2R:17469438-17469558 1.0000 120 chrX:21375726-21375846 1.0000 120 chrX:16275923-16276043 1.0000 120 chr3L:1576509-1576629 1.0000 120 chr2L:6967721-6967841 1.0000 120 chr3R:14308049-14308169 1.0000 120 chr2L:10428665-10428785 1.0000 120 chr2R:15322263-15322383 1.0000 120 chr3L:2651900-2652020 1.0000 120 chr2L:11809443-11809563 1.0000 120 chr2R:21709661-21709781 1.0000 120 chr3R:6368620-6368740 1.0000 120 chr3L:17474880-17475000 1.0000 120 chr3L:15161619-15161739 1.0000 120 chr2L:11091244-11091364 1.0000 120 chr2L:2730031-2730151 1.0000 120 chr2R:18774924-18775044 1.0000 120 chr3R:9052469-9052589 1.0000 120 chr3R:6657481-6657601 1.0000 120 chr3R:12406301-12406421 1.0000 120 chr2R:7815129-7815249 1.0000 120 chrX:3019697-3019817 1.0000 120 chr3R:12350617-12350737 1.0000 120 chr2L:19930178-19930298 1.0000 120 chr3R:10411883-10412003 1.0000 120 chrX:8493557-8493677 1.0000 120 chr3R:14095551-14095671 1.0000 120 chr2R:12727687-12727807 1.0000 120 chr2R:15381188-15381308 1.0000 120 chr2R:7241702-7241822 1.0000 120 chr2L:1980817-1980937 1.0000 120 chr3L:11681885-11682005 1.0000 120 chr3R:23358589-23358709 1.0000 120 chr3L:554749-554869 1.0000 120 chrX:13626022-13626142 1.0000 120 chrX:14169208-14169328 1.0000 120 chr3R:7092125-7092245 1.0000 120 chr3R:10024140-10024260 1.0000 120 chr2R:12140496-12140616 1.0000 120 chr2R:23702178-23702298 1.0000 120 chr2L:7871954-7872074 1.0000 120 chr2R:11190922-11191042 1.0000 120 chr3R:21073314-21073434 1.0000 120 chr3L:20389127-20389247 1.0000 120 chr2R:11640970-11641090 1.0000 120 chr2L:1207604-1207724 1.0000 120 chr3R:17671024-17671144 1.0000 120 chr3R:21377383-21377503 1.0000 120 chr3L:13923503-13923623 1.0000 120 chr2L:8982707-8982827 1.0000 120 chr2R:15934679-15934799 1.0000 120 chrX:19348972-19349092 1.0000 120 chr2R:9541745-9541865 1.0000 120 chr2R:8649301-8649421 1.0000 120 chr3R:7821699-7821819 1.0000 120 chr2R:22657269-22657389 1.0000 120 chr2R:20319588-20319708 1.0000 120 chr2R:8002300-8002420 1.0000 120 chrX:16944111-16944231 1.0000 120 chr3R:13051586-13051706 1.0000 120 chr3R:28677006-28677126 1.0000 120 chr2L:12463137-12463257 1.0000 120 chr2L:1629679-1629799 1.0000 120 chr2L:9699247-9699367 1.0000 120 chr3L:6189160-6189280 1.0000 120 chr3R:26014353-26014473 1.0000 120 chr3L:3437203-3437323 1.0000 120 chr3L:13356141-13356261 1.0000 120 chr3R:29748993-29749113 1.0000 120 chr3R:15250620-15250740 1.0000 120 chrX:17330413-17330533 1.0000 120 chr3L:16584175-16584295 1.0000 120 chr3R:26121191-26121311 1.0000 120 chrX:8542129-8542249 1.0000 120 chr2R:16202940-16203060 1.0000 120 chr2L:9387437-9387557 1.0000 120 chr3R:12408204-12408324 1.0000 120 chr3R:25184131-25184251 1.0000 120 chr3L:20784979-20785099 1.0000 120 chr3R:17619876-17619996 1.0000 120 chr3L:9691301-9691421 1.0000 120 chr3R:26888458-26888578 1.0000 120 chr2L:1614201-1614321 1.0000 120 chr2R:16178654-16178774 1.0000 120 chrX:16286216-16286336 1.0000 120 chr3R:24010923-24011043 1.0000 120 chr3R:19648541-19648661 1.0000 120 chr2R:22677979-22678099 1.0000 120 chr3R:10350204-10350324 1.0000 120 chr3R:25275504-25275624 1.0000 120 chr3L:9614076-9614196 1.0000 120 chrX:5336811-5336931 1.0000 120 chr3L:14031772-14031892 1.0000 120 chr2R:9971070-9971190 1.0000 120 chr3L:19000600-19000720 1.0000 120 chr3R:26104519-26104639 1.0000 120 chr3L:1546021-1546141 1.0000 120 chr3R:26566883-26567003 1.0000 120 chr2R:7636668-7636788 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Dek/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dek.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.342 C 0.16 G 0.159 T 0.34 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.16 G 0.159 T 0.34 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGSCRSCA MEME-1 width = 8 sites = 37 llr = 320 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:::3::7 pos.-specific C ::6924a: probability G 194:56:3 matrix T 61:1:::: bits 2.7 * 2.4 * * 2.1 * * * 1.9 * * * Relative 1.6 *** ** Entropy 1.3 *** ** (12.5 bits) 1.1 *** *** 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TGCCGGCA consensus A G AC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21073314-21073434 103 6.63e-06 AACTTCGCTA TGCCGCCA AACTTATCGA chrX:5084929-5085049 23 8.41e-06 AAACACGAAA TGCCGCCG TTTTATAGCC chr2R:16856820-16856940 24 8.41e-06 CCAAAGAAAA TGCCGCCG ATAAGGTAAG chr2R:24337630-24337750 57 1.03e-05 ATAACTTATG TGGCGCCA TCTAGGCAAG chr3L:8718671-8718791 71 1.03e-05 GCCTAAACAA TGGCGCCA CCAGATAATT chr2L:18441391-18441511 27 1.03e-05 CATGACACTG TGGCGCCA TTGCGGAGAA chr3R:24544438-24544558 113 1.03e-05 TGTTCTATTT TGGCGCCA chr3R:23722096-23722216 100 1.31e-05 TTATTTGGAT AGCCGGCA ACGTCACAAT chrX:18366668-18366788 29 2.07e-05 GGAAAAACAA AGGCGGCA ACAAGAACAA chr3R:9784409-9784529 97 2.07e-05 GCTTTTGTTC TGCCCGCG AAGAATTGGT chr3R:12350617-12350737 41 2.64e-05 CGCCACCTAC TGGCCGCA AGCTCACATC chr3R:15804081-15804201 92 2.64e-05 GCGCTCAATG TGGCCGCA GAAAAATACC chrX:22488407-22488527 19 2.64e-05 TAAACAAAAC TGCCCCCA AACTGTTTAA chr3L:9614076-9614196 68 3.51e-05 GCAAGCAGTA TGCCAGCA GTTCGAAAAG chrX:16275923-16276043 17 3.51e-05 CGATTACCAG GGCCGGCA TAGCGATTGC chr3R:19648541-19648661 13 4.02e-05 CAAAAATCTT TGCCAGCG GAGTTATTTT chr3R:14308049-14308169 19 4.02e-05 CATCACATTT TGCCAGCG TCACCAACAC chr3R:26536134-26536254 18 4.02e-05 tcaaaTAGGA AGGCGCCG ATTAAAAATC chr2R:7636668-7636788 55 5.12e-05 TGGGCGATTT GGGCGGCA AAACGCCTGT chr2R:16202940-16203060 68 5.12e-05 CGCTAAAAGT TGGCAGCA CGGCCAGGGG chr2L:15061467-15061587 12 5.12e-05 ATGTTAAAAA TGCCACCA CCATCTTTAC chr3R:26566883-26567003 43 6.08e-05 TTCTCCAGAA TGGCACCA AGTTAGCTGA chr2L:12520522-12520642 67 6.51e-05 CAAAGTGGAA AGCCCGCA TTCATATAAG chr2R:23702178-23702298 88 6.60e-05 GCTGCATTAA AGCCCGCG AACTGCGTAC chr3R:28677006-28677126 103 6.99e-05 TTTATATAAT AGCCCCCA TTTTTCATGC chr2R:7407841-7407961 80 7.58e-05 CTGCGCTCTT AGCCAGCA CTCCAACCAC chr2L:2730031-2730151 17 9.11e-05 GTCGCGCTGA CGCCGGCA AACACTTGGA chr3L:11708400-11708520 98 9.11e-05 GTCGCACTCG AGCCACCA ACGAAAGTGA chr2L:1980817-1980937 28 9.72e-05 GCAGGTGGCA AGGCAGCG ATAGATCGGA chr3R:26888458-26888578 97 1.06e-04 TATTGTTAAC AGGCACCA ATTTGAATTC chr2L:9699247-9699367 88 1.10e-04 GGTGTGAGTA GGCCAGCG ATAGGCAGCT chrX:5336811-5336931 29 1.22e-04 AGCTGGGTAT TTCCGGCA TATTATAACA chr2R:12140496-12140616 95 1.35e-04 AGCAGTCAAC TTGCGGCA TTTTTTAGTA chr2R:17098571-17098691 113 1.39e-04 GTGGCTCGAA TTGCGGCG chr3L:607026-607146 66 1.43e-04 GTTAAAATTA TTGCGCCA CCTGGCGGTC chr3R:21377383-21377503 33 1.57e-04 GCGACGAGAT TGCTGGCG ATGGCAAAAC chr2L:10303969-10304089 4 1.71e-04 AAT TGCTGCCA ACTGAATTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21073314-21073434 6.6e-06 102_[+1]_10 chrX:5084929-5085049 8.4e-06 22_[+1]_90 chr2R:16856820-16856940 8.4e-06 23_[+1]_89 chr2R:24337630-24337750 1e-05 56_[+1]_56 chr3L:8718671-8718791 1e-05 70_[+1]_42 chr2L:18441391-18441511 1e-05 26_[+1]_86 chr3R:24544438-24544558 1e-05 112_[+1] chr3R:23722096-23722216 1.3e-05 99_[+1]_13 chrX:18366668-18366788 2.1e-05 28_[+1]_84 chr3R:9784409-9784529 2.1e-05 96_[+1]_16 chr3R:12350617-12350737 2.6e-05 40_[+1]_72 chr3R:15804081-15804201 2.6e-05 91_[+1]_21 chrX:22488407-22488527 2.6e-05 18_[+1]_94 chr3L:9614076-9614196 3.5e-05 67_[+1]_45 chrX:16275923-16276043 3.5e-05 16_[+1]_96 chr3R:19648541-19648661 4e-05 12_[+1]_100 chr3R:14308049-14308169 4e-05 18_[+1]_94 chr3R:26536134-26536254 4e-05 17_[+1]_95 chr2R:7636668-7636788 5.1e-05 54_[+1]_58 chr2R:16202940-16203060 5.1e-05 67_[+1]_45 chr2L:15061467-15061587 5.1e-05 11_[+1]_101 chr3R:26566883-26567003 6.1e-05 42_[+1]_70 chr2L:12520522-12520642 6.5e-05 66_[+1]_46 chr2R:23702178-23702298 6.6e-05 87_[+1]_25 chr3R:28677006-28677126 7e-05 102_[+1]_10 chr2R:7407841-7407961 7.6e-05 79_[+1]_33 chr2L:2730031-2730151 9.1e-05 16_[+1]_96 chr3L:11708400-11708520 9.1e-05 97_[+1]_15 chr2L:1980817-1980937 9.7e-05 27_[+1]_85 chr3R:26888458-26888578 0.00011 96_[+1]_16 chr2L:9699247-9699367 0.00011 87_[+1]_25 chrX:5336811-5336931 0.00012 28_[+1]_84 chr2R:12140496-12140616 0.00013 94_[+1]_18 chr2R:17098571-17098691 0.00014 112_[+1] chr3L:607026-607146 0.00014 65_[+1]_47 chr3R:21377383-21377503 0.00016 32_[+1]_80 chr2L:10303969-10304089 0.00017 3_[+1]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGSCRSCA width=8 seqs=37 chr3R:21073314-21073434 ( 103) TGCCGCCA 1 chrX:5084929-5085049 ( 23) TGCCGCCG 1 chr2R:16856820-16856940 ( 24) TGCCGCCG 1 chr2R:24337630-24337750 ( 57) TGGCGCCA 1 chr3L:8718671-8718791 ( 71) TGGCGCCA 1 chr2L:18441391-18441511 ( 27) TGGCGCCA 1 chr3R:24544438-24544558 ( 113) TGGCGCCA 1 chr3R:23722096-23722216 ( 100) AGCCGGCA 1 chrX:18366668-18366788 ( 29) AGGCGGCA 1 chr3R:9784409-9784529 ( 97) TGCCCGCG 1 chr3R:12350617-12350737 ( 41) TGGCCGCA 1 chr3R:15804081-15804201 ( 92) TGGCCGCA 1 chrX:22488407-22488527 ( 19) TGCCCCCA 1 chr3L:9614076-9614196 ( 68) TGCCAGCA 1 chrX:16275923-16276043 ( 17) GGCCGGCA 1 chr3R:19648541-19648661 ( 13) TGCCAGCG 1 chr3R:14308049-14308169 ( 19) TGCCAGCG 1 chr3R:26536134-26536254 ( 18) AGGCGCCG 1 chr2R:7636668-7636788 ( 55) GGGCGGCA 1 chr2R:16202940-16203060 ( 68) TGGCAGCA 1 chr2L:15061467-15061587 ( 12) TGCCACCA 1 chr3R:26566883-26567003 ( 43) TGGCACCA 1 chr2L:12520522-12520642 ( 67) AGCCCGCA 1 chr2R:23702178-23702298 ( 88) AGCCCGCG 1 chr3R:28677006-28677126 ( 103) AGCCCCCA 1 chr2R:7407841-7407961 ( 80) AGCCAGCA 1 chr2L:2730031-2730151 ( 17) CGCCGGCA 1 chr3L:11708400-11708520 ( 98) AGCCACCA 1 chr2L:1980817-1980937 ( 28) AGGCAGCG 1 chr3R:26888458-26888578 ( 97) AGGCACCA 1 chr2L:9699247-9699367 ( 88) GGCCAGCG 1 chrX:5336811-5336931 ( 29) TTCCGGCA 1 chr2R:12140496-12140616 ( 95) TTGCGGCA 1 chr2R:17098571-17098691 ( 113) TTGCGGCG 1 chr3L:607026-607146 ( 66) TTGCGCCA 1 chr3R:21377383-21377503 ( 33) TGCTGGCG 1 chr2L:10303969-10304089 ( 4) TGCTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.73988 E= 1.1e-001 -34 -256 -97 87 -1185 -1185 249 -165 -1185 183 144 -1185 -1185 257 -1185 -265 -20 25 169 -1185 -1185 144 184 -1185 -1185 265 -1185 -1185 104 -1185 90 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.1e-001 0.270270 0.027027 0.081081 0.621622 0.000000 0.000000 0.891892 0.108108 0.000000 0.567568 0.432432 0.000000 0.000000 0.945946 0.000000 0.054054 0.297297 0.189189 0.513514 0.000000 0.000000 0.432432 0.567568 0.000000 0.000000 1.000000 0.000000 0.000000 0.702703 0.000000 0.297297 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSCRSCA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]G[CG]C[GA][GC]C[AG] -------------------------------------------------------------------------------- Time 7.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGTGG MEME-2 width = 8 sites = 12 llr = 132 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :::::::: probability G 892a8:a9 matrix T :18:2a:1 bits 2.7 * * 2.4 * * 2.1 * * ** 1.9 ** ** ** Relative 1.6 ** ***** Entropy 1.3 ** ***** (15.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGTGGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19000600-19000720 39 1.87e-06 CGGCTATGCC GGTGGTGG GTGTCTTCGC chrX:13626022-13626142 35 1.87e-06 GCAAAAAATG GGTGGTGG TGAACCTTTG chr3L:17474880-17475000 83 1.87e-06 TACACATTCT GGTGGTGG CCTGCACTTA chr3L:22471736-22471856 83 1.87e-06 tatatatata GGTGGTGG TTAGGTAAAT chr3L:1188911-1189031 59 1.87e-06 TTCCACACAT GGTGGTGG AACAGGGAAA chr2R:16856820-16856940 69 2.74e-06 CGGTTACTGC GGGGGTGG CGAAAGCCGT chr3R:9052469-9052589 10 1.08e-05 TGAAACATT GGTGTTGG CCAACTGCCG chr3L:13411127-13411247 86 1.08e-05 AGCGACATCT AGTGGTGG TCTGGATTTT chrX:9283110-9283230 98 1.08e-05 CTCACTGTTC AGTGGTGG CGCAAACCAT chr3L:1576509-1576629 77 1.87e-05 TTAAGTCTGC GGTGGTGT AAGCACTTGG chr2R:8572678-8572798 65 1.87e-05 TAGCACTCAA GTTGGTGG ATGACATGGA chr2R:23702178-23702298 71 2.25e-05 GCAACTGAAA GGGGTTGG CTGCATTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19000600-19000720 1.9e-06 38_[+2]_74 chrX:13626022-13626142 1.9e-06 34_[+2]_78 chr3L:17474880-17475000 1.9e-06 82_[+2]_30 chr3L:22471736-22471856 1.9e-06 82_[+2]_30 chr3L:1188911-1189031 1.9e-06 58_[+2]_54 chr2R:16856820-16856940 2.7e-06 68_[+2]_44 chr3R:9052469-9052589 1.1e-05 9_[+2]_103 chr3L:13411127-13411247 1.1e-05 85_[+2]_27 chrX:9283110-9283230 1.1e-05 97_[+2]_15 chr3L:1576509-1576629 1.9e-05 76_[+2]_36 chr2R:8572678-8572798 1.9e-05 64_[+2]_48 chr2R:23702178-23702298 2.2e-05 70_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGTGG width=8 seqs=12 chr3L:19000600-19000720 ( 39) GGTGGTGG 1 chrX:13626022-13626142 ( 35) GGTGGTGG 1 chr3L:17474880-17475000 ( 83) GGTGGTGG 1 chr3L:22471736-22471856 ( 83) GGTGGTGG 1 chr3L:1188911-1189031 ( 59) GGTGGTGG 1 chr2R:16856820-16856940 ( 69) GGGGGTGG 1 chr3R:9052469-9052589 ( 10) GGTGTTGG 1 chr3L:13411127-13411247 ( 86) AGTGGTGG 1 chrX:9283110-9283230 ( 98) AGTGGTGG 1 chr3L:1576509-1576629 ( 77) GGTGGTGT 1 chr2R:8572678-8572798 ( 65) GTTGGTGG 1 chr2R:23702178-23702298 ( 71) GGGGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 2.3e+000 -104 -1023 239 -1023 -1023 -1023 253 -202 -1023 -1023 7 129 -1023 -1023 265 -1023 -1023 -1023 239 -103 -1023 -1023 -1023 156 -1023 -1023 265 -1023 -1023 -1023 253 -202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.3e+000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGTGG MEME-2 regular expression -------------------------------------------------------------------------------- GGTGGTGG -------------------------------------------------------------------------------- Time 14.25 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCSCY MEME-3 width = 8 sites = 16 llr = 165 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:a:1:1: pos.-specific C 1a::7696 probability G 9::a:4:: matrix T ::::3::4 bits 2.7 * * 2.4 * * 2.1 * * 1.9 ** * * Relative 1.6 **** ** Entropy 1.3 **** *** (14.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCCCC consensus TG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19166413-19166533 23 9.07e-07 CTTCTGTTGA GCAGCCCC GATTAAAGTG chr2L:5771315-5771435 27 1.81e-06 TAGTTCTACA GCAGCGCC CTCTCACAGA chr3L:8060495-8060615 8 1.81e-06 CCTGAAC GCAGCGCC TTAGACCACT chr2R:22677979-22678099 109 3.73e-06 TACGGCCGTT GCAGCCCT GGCA chr2R:8649301-8649421 105 3.73e-06 TATCGTTAAA GCAGCCCT CGCAGAGA chr2L:6070907-6071027 109 3.73e-06 CAAATCGGTG GCAGCCCT GTGT chr3R:9052469-9052589 61 5.65e-06 AGGTCGGATC GCAGCGCT GCTGGATTTT chr2R:23615214-23615334 51 7.58e-06 CAATAGTCAC GCAGTCCC GAGTAAACAA chrX:3019697-3019817 17 9.49e-06 TGCAGAAGGT GCAGTGCC TACAAACGGA chr3R:26566883-26567003 103 1.23e-05 ATCACCAACA GCAGCCAC ACCCAGTGCA chr3R:28327418-28327538 58 1.23e-05 TATTATTCTC CCAGCCCC TACCTTAATT chr3L:13411127-13411247 74 1.52e-05 TTTAACGTTT GCAGCGAC ATCTAGTGGT chr3L:554749-554869 107 2.12e-05 TGCATTTCAT GCAGACCC CACAGA chr2L:12520522-12520642 84 2.53e-05 ATTCATATAA GCAGTGCT CTCAAGATCA chr2R:13935298-13935418 86 2.53e-05 AAAAAATTCT GCAGTGCT ATTCATATGT chr3R:4905902-4906022 22 2.91e-05 TGAAAATTTT ACAGCCCC TCTGATTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19166413-19166533 9.1e-07 22_[+3]_90 chr2L:5771315-5771435 1.8e-06 26_[+3]_86 chr3L:8060495-8060615 1.8e-06 7_[+3]_105 chr2R:22677979-22678099 3.7e-06 108_[+3]_4 chr2R:8649301-8649421 3.7e-06 104_[+3]_8 chr2L:6070907-6071027 3.7e-06 108_[+3]_4 chr3R:9052469-9052589 5.6e-06 60_[+3]_52 chr2R:23615214-23615334 7.6e-06 50_[+3]_62 chrX:3019697-3019817 9.5e-06 16_[+3]_96 chr3R:26566883-26567003 1.2e-05 102_[+3]_10 chr3R:28327418-28327538 1.2e-05 57_[+3]_55 chr3L:13411127-13411247 1.5e-05 73_[+3]_39 chr3L:554749-554869 2.1e-05 106_[+3]_6 chr2L:12520522-12520642 2.5e-05 83_[+3]_29 chr2R:13935298-13935418 2.5e-05 85_[+3]_27 chr3R:4905902-4906022 2.9e-05 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCSCY width=8 seqs=16 chrX:19166413-19166533 ( 23) GCAGCCCC 1 chr2L:5771315-5771435 ( 27) GCAGCGCC 1 chr3L:8060495-8060615 ( 8) GCAGCGCC 1 chr2R:22677979-22678099 ( 109) GCAGCCCT 1 chr2R:8649301-8649421 ( 105) GCAGCCCT 1 chr2L:6070907-6071027 ( 109) GCAGCCCT 1 chr3R:9052469-9052589 ( 61) GCAGCGCT 1 chr2R:23615214-23615334 ( 51) GCAGTCCC 1 chrX:3019697-3019817 ( 17) GCAGTGCC 1 chr3R:26566883-26567003 ( 103) GCAGCCAC 1 chr3R:28327418-28327538 ( 58) CCAGCCCC 1 chr3L:13411127-13411247 ( 74) GCAGCGAC 1 chr3L:554749-554869 ( 107) GCAGACCC 1 chr2L:12520522-12520642 ( 84) GCAGTGCT 1 chr2R:13935298-13935418 ( 86) GCAGTGCT 1 chr3R:4905902-4906022 ( 22) ACAGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 2.4e+000 -245 -135 246 -1064 -1064 265 -1064 -1064 155 -1064 -1064 -1064 -1064 -1064 265 -1064 -245 211 -1064 -44 -1064 182 146 -1064 -145 245 -1064 -1064 -1064 197 -1064 14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.4e+000 0.062500 0.062500 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.687500 0.000000 0.250000 0.000000 0.562500 0.437500 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCSCY MEME-3 regular expression -------------------------------------------------------------------------------- GCAG[CT][CG]C[CT] -------------------------------------------------------------------------------- Time 20.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGCSCC MEME-4 width = 8 sites = 12 llr = 127 E-value = 4.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::2:: pos.-specific C ::8:938a probability G :a:a:43: matrix T 9:3:11:: bits 2.7 * * * 2.4 * * * 2.1 * ** * 1.9 * ** ** Relative 1.6 **** ** Entropy 1.3 **** ** (15.2 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCGCGCC consensus T CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9971070-9971190 10 8.96e-07 CGATCACAA TGCGCGCC GTAATTTGAA chr2R:7636668-7636788 98 1.80e-06 AAAGCCAAAC TGCGCCCC TCGACGAAAT chr2L:9699247-9699367 62 1.80e-06 GACTCGCGGA TGCGCCCC AGCACGCAGG chr3R:21073314-21073434 75 3.58e-06 AAGTTCTGGT TGCGCCGC CTGGGTGGTT chr2L:4456856-4456976 30 5.51e-06 TAACTGATAA TGCGCACC GACGCAGTTA chr3R:8980045-8980165 5 5.51e-06 CTTG TGCGCACC ATGTAGAAAC chr3L:11556873-11556993 72 9.33e-06 GTCCTTCATT TGTGCCCC CCACTGTAGA chr3R:10350204-10350324 55 1.12e-05 ACCGGTGTTG TGCGCTCC TGATAACTGC chr3R:12350617-12350737 27 1.21e-05 GGATGGAATA AGCGCGCC ACCTACTGGC chr3L:13923503-13923623 110 1.69e-05 TTTTTCTTCA TGTGCGGC TTT chr3L:15591350-15591470 7 1.69e-05 ATAATT TGTGCGGC AGCAGAAAAA chr2R:11190922-11191042 59 1.88e-05 ATTGATAAAG TGCGTGCC CTGTACATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9971070-9971190 9e-07 9_[+4]_103 chr2R:7636668-7636788 1.8e-06 97_[+4]_15 chr2L:9699247-9699367 1.8e-06 61_[+4]_51 chr3R:21073314-21073434 3.6e-06 74_[+4]_38 chr2L:4456856-4456976 5.5e-06 29_[+4]_83 chr3R:8980045-8980165 5.5e-06 4_[+4]_108 chr3L:11556873-11556993 9.3e-06 71_[+4]_41 chr3R:10350204-10350324 1.1e-05 54_[+4]_58 chr3R:12350617-12350737 1.2e-05 26_[+4]_86 chr3L:13923503-13923623 1.7e-05 109_[+4]_3 chr3L:15591350-15591470 1.7e-05 6_[+4]_106 chr2R:11190922-11191042 1.9e-05 58_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCSCC width=8 seqs=12 chr2R:9971070-9971190 ( 10) TGCGCGCC 1 chr2R:7636668-7636788 ( 98) TGCGCCCC 1 chr2L:9699247-9699367 ( 62) TGCGCCCC 1 chr3R:21073314-21073434 ( 75) TGCGCCGC 1 chr2L:4456856-4456976 ( 30) TGCGCACC 1 chr3R:8980045-8980165 ( 5) TGCGCACC 1 chr3L:11556873-11556993 ( 72) TGTGCCCC 1 chr3R:10350204-10350324 ( 55) TGCGCTCC 1 chr3R:12350617-12350737 ( 27) AGCGCGCC 1 chr3L:13923503-13923623 ( 110) TGTGCGGC 1 chr3L:15591350-15591470 ( 7) TGTGCGGC 1 chr2R:11190922-11191042 ( 59) TGCGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 4.1e+002 -203 -1023 -1023 143 -1023 -1023 265 -1023 -1023 223 -1023 -44 -1023 -1023 265 -1023 -1023 252 -1023 -202 -104 106 139 -202 -1023 223 65 -1023 -1023 265 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.1e+002 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.166667 0.333333 0.416667 0.083333 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCSCC MEME-4 regular expression -------------------------------------------------------------------------------- TG[CT]GC[GC][CG]C -------------------------------------------------------------------------------- Time 27.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TSGCGYTS MEME-5 width = 8 sites = 10 llr = 106 E-value = 8.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :4:a:5:4 probability G :6a:a1:6 matrix T a::::4a: bits 2.7 *** 2.4 *** 2.1 *** 1.9 *** Relative 1.6 ***** ** Entropy 1.3 ***** ** (15.3 bits) 1.1 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGCGCTG consensus C T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11556873-11556993 110 1.89e-06 GTCTCGGACG TGGCGCTG TGA chr2L:2730031-2730151 8 5.70e-06 TCTATAG TCGCGCTG ACGCCGGCAA chr3R:14308049-14308169 67 5.70e-06 AAAAATGGCG TCGCGCTG TTCGATCTTT chr3R:15804081-15804201 80 5.70e-06 TTGTTCGCAT TGGCGCTC AATGTGGCCG chr3R:23722096-23722216 74 5.70e-06 AGTCAACAGA TGGCGCTC TAAAATCTTT chrX:21375726-21375846 2 1.16e-05 T TGGCGTTG GCGTGGGGTT chr3L:14671684-14671804 17 1.16e-05 TACTGTTATA TGGCGTTG CCAGAATTGA chr2R:16202940-16203060 90 1.97e-05 CAGGGGATGG TCGCGTTG CCAACCAAAG chr2L:6971845-6971965 71 2.57e-05 CTTTTCCCAC TCGCGTTC AATTGCTATT chr3L:607026-607146 76 2.95e-05 TTGCGCCACC TGGCGGTC CACTAGGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11556873-11556993 1.9e-06 109_[+5]_3 chr2L:2730031-2730151 5.7e-06 7_[+5]_105 chr3R:14308049-14308169 5.7e-06 66_[+5]_46 chr3R:15804081-15804201 5.7e-06 79_[+5]_33 chr3R:23722096-23722216 5.7e-06 73_[+5]_39 chrX:21375726-21375846 1.2e-05 1_[+5]_111 chr3L:14671684-14671804 1.2e-05 16_[+5]_96 chr2R:16202940-16203060 2e-05 89_[+5]_23 chr2L:6971845-6971965 2.6e-05 70_[+5]_42 chr3L:607026-607146 2.9e-05 75_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSGCGYTS width=8 seqs=10 chr3L:11556873-11556993 ( 110) TGGCGCTG 1 chr2L:2730031-2730151 ( 8) TCGCGCTG 1 chr3R:14308049-14308169 ( 67) TCGCGCTG 1 chr3R:15804081-15804201 ( 80) TGGCGCTC 1 chr3R:23722096-23722216 ( 74) TGGCGCTC 1 chrX:21375726-21375846 ( 2) TGGCGTTG 1 chr3L:14671684-14671804 ( 17) TGGCGTTG 1 chr2R:16202940-16203060 ( 90) TCGCGTTG 1 chr2L:6971845-6971965 ( 71) TCGCGTTC 1 chr3L:607026-607146 ( 76) TGGCGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 8.1e+004 -997 -997 -997 156 -997 133 192 -997 -997 -997 265 -997 -997 265 -997 -997 -997 -997 265 -997 -997 165 -67 24 -997 -997 -997 156 -997 133 192 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 8.1e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.100000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.600000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCGYTS MEME-5 regular expression -------------------------------------------------------------------------------- T[GC]GCG[CT]T[GC] -------------------------------------------------------------------------------- Time 33.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16856820-16856940 5.73e-06 23_[+1(8.41e-06)]_37_[+2(2.74e-06)]_\ 44 chr3R:17617503-17617623 5.46e-01 120 chr2R:8665392-8665512 9.50e-01 120 chr3R:29503670-29503790 1.04e-01 120 chr3R:29904183-29904303 9.46e-01 120 chr3R:22794092-22794212 4.91e-01 120 chr2R:7463190-7463310 6.43e-01 120 chr3R:8980045-8980165 2.56e-04 4_[+4(5.51e-06)]_108 chr2R:17391946-17392066 9.82e-01 120 chr2R:18435179-18435299 8.57e-01 120 chr2R:23072355-23072475 3.24e-01 120 chr3R:24544438-24544558 6.42e-03 112_[+1(1.03e-05)] chr2R:19728993-19729113 1.38e-01 53_[+2(6.91e-05)]_59 chr3R:9214361-9214481 2.76e-01 120 chr3R:23722096-23722216 5.49e-04 73_[+5(5.70e-06)]_18_[+1(1.31e-05)]_\ 13 chr2L:9089843-9089963 5.47e-01 120 chr2R:13935298-13935418 1.47e-02 85_[+3(2.53e-05)]_27 chr2R:16589188-16589308 6.02e-02 120 chr3R:4905902-4906022 4.98e-02 21_[+3(2.91e-05)]_91 chr3L:16146635-16146755 7.33e-01 120 chr3L:11556873-11556993 1.22e-05 71_[+4(9.33e-06)]_30_[+5(1.89e-06)]_\ 3 chr2L:18441391-18441511 1.37e-03 26_[+1(1.03e-05)]_86 chr2R:11652488-11652608 5.17e-01 120 chr3R:16978054-16978174 9.66e-01 120 chr3R:9784409-9784529 2.77e-02 96_[+1(2.07e-05)]_16 chr2L:6622707-6622827 8.68e-01 120 chr2R:6219997-6220117 9.84e-01 120 chr2R:16849552-16849672 7.79e-01 120 chr3L:8718671-8718791 9.89e-03 70_[+1(1.03e-05)]_42 chr2R:13261851-13261971 1.14e-01 120 chr3L:10893574-10893694 9.84e-01 120 chr2R:23907329-23907449 3.70e-01 120 chr2L:5365874-5365994 7.82e-01 120 chr2R:10475978-10476098 1.24e-01 120 chrX:13320805-13320925 8.83e-01 120 chr2L:14011781-14011901 6.85e-02 120 chr3L:4603611-4603731 8.81e-01 120 chr2R:15698134-15698254 1.47e-01 120 chr2L:13203410-13203530 3.71e-01 120 chr3L:17791618-17791738 7.15e-01 120 chr2R:8759623-8759743 8.71e-01 120 chr3L:3382006-3382126 6.87e-01 120 chr3L:1188911-1189031 9.61e-05 58_[+2(1.87e-06)]_54 chrX:10899368-10899488 3.96e-01 120 chr2L:1987897-1988017 7.59e-01 120 chrX:14953954-14954074 3.25e-01 120 chrX:22488407-22488527 2.28e-02 18_[+1(2.64e-05)]_94 chr2L:18119824-18119944 7.02e-01 120 chr2L:11199213-11199333 9.85e-01 120 chr3L:1151789-1151909 7.36e-01 120 chr2L:8010814-8010934 7.84e-01 120 chr2L:6971845-6971965 1.70e-02 70_[+5(2.57e-05)]_42 chr2R:17098571-17098691 1.97e-02 120 chr2R:12755605-12755725 4.74e-01 120 chrX:20434649-20434769 7.26e-01 120 chr3L:19092505-19092625 6.74e-01 120 chr2L:8461985-8462105 8.46e-01 120 chr3R:22726618-22726738 8.79e-02 120 chr3R:21612965-21613085 3.60e-01 120 chr3R:26494394-26494514 9.81e-01 120 chr3R:24865029-24865149 9.88e-01 120 chr2L:7443084-7443204 8.98e-03 120 chr2R:25253192-25253312 9.26e-01 120 chr2R:24337630-24337750 1.81e-03 56_[+1(1.03e-05)]_56 chr2L:19958562-19958682 1.45e-01 120 chrX:5095771-5095891 9.19e-01 120 chr3R:19508740-19508860 6.82e-01 120 chrX:12547173-12547293 8.22e-01 120 chr2L:3092656-3092776 8.22e-01 120 chr3L:11580069-11580189 4.46e-01 120 chr3L:8060495-8060615 9.17e-03 7_[+3(1.81e-06)]_105 chr3L:11511437-11511557 6.94e-01 120 chr3R:21134033-21134153 9.90e-01 120 chr3R:18438998-18439118 9.09e-01 120 chr3R:11665913-11666033 6.24e-01 120 chr3R:28327418-28327538 6.80e-03 57_[+3(1.23e-05)]_55 chr2R:16219453-16219573 7.24e-01 120 chr2R:14305273-14305393 9.41e-01 120 chrX:7691507-7691627 8.40e-01 120 chr3L:17465818-17465938 2.26e-01 120 chr3L:13903416-13903536 1.00e+00 120 chr3R:26105986-26106106 2.19e-01 120 chr2L:4456856-4456976 7.41e-03 29_[+4(5.51e-06)]_83 chr3R:9872196-9872316 6.71e-01 120 chr3L:14671684-14671804 6.01e-03 16_[+5(1.16e-05)]_96 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chr3L:16584175-16584295 4.88e-01 120 chr3R:26121191-26121311 3.27e-01 120 chrX:8542129-8542249 6.26e-01 120 chr2R:16202940-16203060 9.17e-05 67_[+1(5.12e-05)]_14_[+5(1.97e-05)]_\ 23 chr2L:9387437-9387557 5.94e-01 120 chr3R:12408204-12408324 6.79e-03 120 chr3R:25184131-25184251 5.66e-01 120 chr3L:20784979-20785099 7.49e-01 120 chr3R:17619876-17619996 5.74e-03 34_[+4(9.00e-05)]_78 chr3L:9691301-9691421 9.93e-01 120 chr3R:26888458-26888578 1.37e-01 120 chr2L:1614201-1614321 1.97e-03 120 chr2R:16178654-16178774 6.81e-01 120 chrX:16286216-16286336 2.02e-01 120 chr3R:24010923-24011043 8.03e-01 120 chr3R:19648541-19648661 2.98e-02 12_[+1(4.02e-05)]_100 chr2R:22677979-22678099 6.33e-03 108_[+3(3.73e-06)]_4 chr3R:10350204-10350324 1.25e-04 54_[+4(1.12e-05)]_58 chr3R:25275504-25275624 8.59e-01 120 chr3L:9614076-9614196 1.33e-02 67_[+1(3.51e-05)]_24_[+1(6.08e-05)]_\ 13 chrX:5336811-5336931 3.73e-01 120 chr3L:14031772-14031892 9.79e-01 120 chr2R:9971070-9971190 9.94e-05 9_[+4(8.96e-07)]_103 chr3L:19000600-19000720 4.01e-04 38_[+2(1.87e-06)]_74 chr3R:26104519-26104639 9.80e-01 120 chr3L:1546021-1546141 1.38e-01 120 chr3R:26566883-26567003 4.09e-03 42_[+1(6.08e-05)]_52_[+3(1.23e-05)]_\ 10 chr2R:7636668-7636788 1.93e-05 54_[+1(5.12e-05)]_35_[+4(1.80e-06)]_\ 15 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************