******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Deaf1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:14972316-14972436 1.0000 120 chr3R:5802176-5802296 1.0000 120 chr3L:8745314-8745434 1.0000 120 chr2R:16333981-16334101 1.0000 120 chrX:1507879-1507999 1.0000 120 chr3R:12848462-12848582 1.0000 120 chr2L:16000338-16000458 1.0000 120 chr3R:5959530-5959650 1.0000 120 chr2R:10381729-10381849 1.0000 120 chr2L:9566802-9566922 1.0000 120 chrX:16533177-16533297 1.0000 120 chr2L:2109885-2110005 1.0000 120 chr3R:11335958-11336078 1.0000 120 chrX:294957-295077 1.0000 120 chr3R:14405439-14405559 1.0000 120 chr2R:12494859-12494979 1.0000 120 chr3R:25856045-25856165 1.0000 120 chr2L:10964118-10964238 1.0000 120 chrX:8501513-8501633 1.0000 120 chr3R:8768113-8768233 1.0000 120 chr2L:9415192-9415312 1.0000 120 chr2R:16279885-16280005 1.0000 120 chr3R:22497164-22497284 1.0000 120 chrX:19348371-19348491 1.0000 120 chr3L:5351487-5351607 1.0000 120 chr2L:8338178-8338298 1.0000 120 chr2L:13461606-13461726 1.0000 120 chr2L:9886239-9886359 1.0000 120 chr3R:31739502-31739622 1.0000 120 chrX:5165063-5165183 1.0000 120 chr3L:17633308-17633428 1.0000 120 chrX:10158314-10158434 1.0000 120 chr3R:12783291-12783411 1.0000 120 chr3R:12915950-12916070 1.0000 120 chr3L:5273376-5273496 1.0000 120 chrX:2888332-2888452 1.0000 120 chr2L:22142835-22142955 1.0000 120 chr3R:15875706-15875826 1.0000 120 chrX:18186083-18186203 1.0000 120 chrX:12868744-12868864 1.0000 120 chr2L:2311588-2311708 1.0000 120 chrX:17444019-17444139 1.0000 120 chrX:2554001-2554121 1.0000 120 chr3R:8059112-8059232 1.0000 120 chrX:14591650-14591770 1.0000 120 chr2L:15552624-15552744 1.0000 120 chr2R:18008692-18008812 1.0000 120 chr2R:10087443-10087563 1.0000 120 chr3R:28047396-28047516 1.0000 120 chr2R:9247229-9247349 1.0000 120 chr3L:15065045-15065165 1.0000 120 chrX:7825978-7826098 1.0000 120 chr3R:28146535-28146655 1.0000 120 chr3L:13440850-13440970 1.0000 120 chr2R:24390279-24390399 1.0000 120 chr3R:28970405-28970525 1.0000 120 chrX:12128155-12128275 1.0000 120 chr3R:10972278-10972398 1.0000 120 chr2L:15962438-15962558 1.0000 120 chr2L:5100735-5100855 1.0000 120 chr3R:30560184-30560304 1.0000 120 chr3R:28418093-28418213 1.0000 120 chr2R:18007841-18007961 1.0000 120 chr3L:16257257-16257377 1.0000 120 chr3R:17366162-17366282 1.0000 120 chr3L:4046454-4046574 1.0000 120 chr2L:5823940-5824060 1.0000 120 chr3R:17265037-17265157 1.0000 120 chr3L:9182192-9182312 1.0000 120 chrX:20062715-20062835 1.0000 120 chr3R:21294000-21294120 1.0000 120 chrX:3574410-3574530 1.0000 120 chr2R:20424179-20424299 1.0000 120 chr3L:22571841-22571961 1.0000 120 chrX:986020-986140 1.0000 120 chr3L:5423976-5424096 1.0000 120 chr3R:17918029-17918149 1.0000 120 chr2R:23443995-23444115 1.0000 120 chrX:18009542-18009662 1.0000 120 chr3L:5476641-5476761 1.0000 120 chr2R:20550102-20550222 1.0000 120 chr3R:30174589-30174709 1.0000 120 chr3R:17762419-17762539 1.0000 120 chr2R:21126377-21126497 1.0000 120 chr3R:5771894-5772014 1.0000 120 chr2L:20484255-20484375 1.0000 120 chr3R:28990862-28990982 1.0000 120 chr2R:14289395-14289515 1.0000 120 chr3L:4557095-4557215 1.0000 120 chr3R:31048783-31048903 1.0000 120 chr2L:14040075-14040195 1.0000 120 chr3R:16604865-16604985 1.0000 120 chr2L:2011569-2011689 1.0000 120 chr3R:23557356-23557476 1.0000 120 chr2R:14276036-14276156 1.0000 120 chr2L:21198772-21198892 1.0000 120 chr2L:9746491-9746611 1.0000 120 chr3L:1022927-1023047 1.0000 120 chrX:7629593-7629713 1.0000 120 chr3R:12158590-12158710 1.0000 120 chr2L:9743959-9744079 1.0000 120 chr2L:7363234-7363354 1.0000 120 chr3R:16477155-16477275 1.0000 120 chr3R:30149586-30149706 1.0000 120 chr3R:10584946-10585066 1.0000 120 chrX:20927346-20927466 1.0000 120 chrX:6993489-6993609 1.0000 120 chr2R:8537084-8537204 1.0000 120 chr3R:5404134-5404254 1.0000 120 chr2R:16109369-16109489 1.0000 120 chr3L:18945967-18946087 1.0000 120 chr3R:26390153-26390273 1.0000 120 chr2L:8325224-8325344 1.0000 120 chrX:1735222-1735342 1.0000 120 chr3L:22638021-22638141 1.0000 120 chrX:5446543-5446663 1.0000 120 chr3L:3826194-3826314 1.0000 120 chr3R:28654771-28654891 1.0000 120 chr2R:9886523-9886643 1.0000 120 chrX:14222160-14222280 1.0000 120 chr3R:13539009-13539129 1.0000 120 chrX:7759990-7760110 1.0000 120 chr2L:8506868-8506988 1.0000 120 chrX:1103985-1104105 1.0000 120 chr3R:24663183-24663303 1.0000 120 chrX:14853314-14853434 1.0000 120 chr3R:10971100-10971220 1.0000 120 chrX:1608638-1608758 1.0000 120 chr3L:2503630-2503750 1.0000 120 chrX:11293706-11293826 1.0000 120 chr3R:25665739-25665859 1.0000 120 chrX:2580430-2580550 1.0000 120 chrX:1696236-1696356 1.0000 120 chr2R:15164854-15164974 1.0000 120 chr3R:28652825-28652945 1.0000 120 chr3L:857187-857307 1.0000 120 chr2L:7674651-7674771 1.0000 120 chr2L:12539978-12540098 1.0000 120 chr3R:13334110-13334230 1.0000 120 chrX:1410434-1410554 1.0000 120 chrX:15125654-15125774 1.0000 120 chr3L:1842092-1842212 1.0000 120 chr3L:11513626-11513746 1.0000 120 chrX:15973300-15973420 1.0000 120 chr2L:2903760-2903880 1.0000 120 chr2L:6874073-6874193 1.0000 120 chr2R:9836554-9836674 1.0000 120 chrX:14321072-14321192 1.0000 120 chr3R:4077807-4077927 1.0000 120 chrX:21338995-21339115 1.0000 120 chr3L:12688843-12688963 1.0000 120 chr3R:29377458-29377578 1.0000 120 chr3L:1101581-1101701 1.0000 120 chrX:11695977-11696097 1.0000 120 chr2L:17102445-17102565 1.0000 120 chrX:18356229-18356349 1.0000 120 chr3R:31097270-31097390 1.0000 120 chr3R:18950164-18950284 1.0000 120 chr2R:16259829-16259949 1.0000 120 chr2L:5027455-5027575 1.0000 120 chr3R:6259965-6260085 1.0000 120 chrX:17740168-17740288 1.0000 120 chr3L:2282751-2282871 1.0000 120 chrX:3930964-3931084 1.0000 120 chr2R:24727509-24727629 1.0000 120 chrX:6908201-6908321 1.0000 120 chrX:11729166-11729286 1.0000 120 chrX:16005230-16005350 1.0000 120 chr3R:13279586-13279706 1.0000 120 chr3R:23699002-23699122 1.0000 120 chr2R:24075995-24076115 1.0000 120 chr2L:19605506-19605626 1.0000 120 chr3R:29660065-29660185 1.0000 120 chr2L:1043270-1043390 1.0000 120 chr3L:16394606-16394726 1.0000 120 chr2L:13717271-13717391 1.0000 120 chr2R:10350010-10350130 1.0000 120 chr2L:19755205-19755325 1.0000 120 chr2L:11928620-11928740 1.0000 120 chr3L:6719531-6719651 1.0000 120 chr2R:23818941-23819061 1.0000 120 chr3L:22034876-22034996 1.0000 120 chr3L:8582281-8582401 1.0000 120 chr3L:13993372-13993492 1.0000 120 chr2L:9729829-9729949 1.0000 120 chrX:13604719-13604839 1.0000 120 chr2R:20698412-20698532 1.0000 120 chrX:21507540-21507660 1.0000 120 chrX:9902551-9902671 1.0000 120 chr3L:5754105-5754225 1.0000 120 chrX:16063683-16063803 1.0000 120 chrX:2950588-2950708 1.0000 120 chr3L:2488725-2488845 1.0000 120 chrX:15496209-15496329 1.0000 120 chr3L:267204-267324 1.0000 120 chr2R:8860658-8860778 1.0000 120 chr2L:9485648-9485768 1.0000 120 chr3R:12595696-12595816 1.0000 120 chr3L:8419918-8420038 1.0000 120 chr2L:13260923-13261043 1.0000 120 chr3R:31825717-31825837 1.0000 120 chrX:6062996-6063116 1.0000 120 chr2L:19518733-19518853 1.0000 120 chr3R:10601339-10601459 1.0000 120 chr2R:21969676-21969796 1.0000 120 chr3L:15899059-15899179 1.0000 120 chr3L:13803422-13803542 1.0000 120 chr3R:26195207-26195327 1.0000 120 chr2R:24292509-24292629 1.0000 120 chr2R:9351686-9351806 1.0000 120 chr2L:14043782-14043902 1.0000 120 chr2R:24891414-24891534 1.0000 120 chr2R:14187215-14187335 1.0000 120 chr2R:24410533-24410653 1.0000 120 chr2R:10234764-10234884 1.0000 120 chrX:7607017-7607137 1.0000 120 chrX:13444845-13444965 1.0000 120 chr2L:2006221-2006341 1.0000 120 chrX:15385282-15385402 1.0000 120 chr2L:11149142-11149262 1.0000 120 chr3L:17689917-17690037 1.0000 120 chr3R:29068124-29068244 1.0000 120 chrX:11039875-11039995 1.0000 120 chrX:19844406-19844526 1.0000 120 chr3L:18502574-18502694 1.0000 120 chr3R:4280177-4280297 1.0000 120 chr3L:18860589-18860709 1.0000 120 chr2R:13106257-13106377 1.0000 120 chrX:6192537-6192657 1.0000 120 chrX:12568431-12568551 1.0000 120 chr2L:17903130-17903250 1.0000 120 chr3L:6704724-6704844 1.0000 120 chr3R:9640436-9640556 1.0000 120 chr2R:12895631-12895751 1.0000 120 chr2L:13246000-13246120 1.0000 120 chrX:11303286-11303406 1.0000 120 chrX:15443676-15443796 1.0000 120 chr3R:22701909-22702029 1.0000 120 chr3R:20484553-20484673 1.0000 120 chr3L:17002631-17002751 1.0000 120 chr2L:13803917-13804037 1.0000 120 chr3R:7394186-7394306 1.0000 120 chr3R:25209375-25209495 1.0000 120 chr3R:12728058-12728178 1.0000 120 chr2L:1048041-1048161 1.0000 120 chr3R:19664870-19664990 1.0000 120 chr2L:18275803-18275923 1.0000 120 chr3L:1910243-1910363 1.0000 120 chr2R:11172190-11172310 1.0000 120 chr3L:10201816-10201936 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Deaf1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Deaf1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.23 C 0.27 G 0.269 T 0.231 Background letter frequencies (from file dataset with add-one prior applied): A 0.23 C 0.27 G 0.269 T 0.231 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SYTCGGCT MEME-1 width = 8 sites = 147 llr = 1008 E-value = 2.5e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11::::11 pos.-specific C 53:a::61 probability G 4:::a91: matrix T 16a::128 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** * Entropy 1.1 **** * (9.9 bits) 0.8 **** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTCGGCT consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19664870-19664990 109 1.76e-05 GTGGTGTTGT CTTCGGCT TTTG chr2L:13803917-13804037 61 1.76e-05 CTCTCTCCAG CTTCGGCT TGTTTGTTTG chrX:11039875-11039995 93 1.76e-05 GACGTCGCTG CTTCGGCT ACGCTCGGCA chrX:13444845-13444965 47 1.76e-05 AACGAACGCA CTTCGGCT GCTTTCGGCC chr2R:24410533-24410653 97 1.76e-05 GCCGAGTGTC CTTCGGCT GTGGCCACTG chr2R:9351686-9351806 63 1.76e-05 CAAGCTCGTC CTTCGGCT CGGCACGCAG chr3L:13803422-13803542 64 1.76e-05 CAAAACACGA CTTCGGCT TTTCCGAAGG chr3R:31825717-31825837 67 1.76e-05 TTTGGGCGCA CTTCGGCT CGCGCTTTCC chr3R:29660065-29660185 18 1.76e-05 CGGCCGCGGA CTTCGGCT CGGCCTGCGT chr3R:6259965-6260085 35 1.76e-05 CCGAGTGCGA CTTCGGCT GCAACCTGGC chrX:1608638-1608758 63 1.76e-05 TTCGGCGGCG CTTCGGCT GCTCCTTGCC chrX:14853314-14853434 104 1.76e-05 TTTTCGGTTT CTTCGGCT CGCCAAGAA chrX:1103985-1104105 84 1.76e-05 GAGTTTTCCT CTTCGGCT GCTTTGTCAT chr3R:17918029-17918149 21 1.76e-05 CGTGCAGTGT CTTCGGCT CGCAacactc chrX:3574410-3574530 59 1.76e-05 CCTTCGGGTC CTTCGGCT GTGACTTCGT chr3L:15065045-15065165 70 1.76e-05 ATTCGGCCAA CTTCGGCT CCGGACGAAC chr2R:9247229-9247349 69 1.76e-05 TTCTGCGCAG CTTCGGCT CTGCTTCGTT chr2L:15552624-15552744 15 1.76e-05 TCGGGTTATC CTTCGGCT CTGATAAGAC chr3R:31739502-31739622 83 1.76e-05 AGTACGCACA CTTCGGCT CCATTCGTTT chrX:8501513-8501633 91 1.76e-05 ATTCTCATCT CTTCGGCT TTGCCTCGTT chr2L:13246000-13246120 48 3.50e-05 GAGCTTTTGA GTTCGGCT TTTGGCTTCG chr2L:17903130-17903250 89 3.50e-05 GAACTTTTTT GTTCGGCT GACACACTTT chrX:16063683-16063803 5 3.50e-05 TTGT GTTCGGCT TTTCATTTGA chrX:10158314-10158434 29 3.50e-05 CAAAACAGAA GTTCGGCT CCTGACGGCA chr2L:9566802-9566922 76 3.50e-05 CTCGGGCCGC GTTCGGCT CGGTAACCGA chrX:986020-986140 77 5.56e-05 AACCGAAGGA CCTCGGCT TTTCTGCCAC chr2L:9415192-9415312 71 5.56e-05 GACTTCGTGG CCTCGGCT AACATGAGTT chrX:11303286-11303406 47 7.60e-05 ATTCGGATGC GCTCGGCT GATTGCCGAT chrX:6908201-6908321 38 7.60e-05 GGCAAATGGA GCTCGGCT TCGGGAAATG chr2L:5027455-5027575 35 7.60e-05 CACTCGGCAC GCTCGGCT CCACTCGTAA chr3L:857187-857307 101 7.60e-05 CTCGTCCTGT GCTCGGCT TCACCACAGG chr2R:8537084-8537204 86 7.60e-05 CCGGCTTCTG GCTCGGCT GGAGCTCGAG chr2R:14276036-14276156 15 7.60e-05 AATCTCGCGG GCTCGGCT CGGCCGTTTC chr3L:22571841-22571961 46 7.60e-05 GACTCCTCGC GCTCGGCT CGTCGGCGCT chr2R:20424179-20424299 54 7.60e-05 CGTTTTTGGC GCTCGGCT TTCGCCGACC chr3L:9182192-9182312 103 7.60e-05 GAAATGTTGA GCTCGGCT TTTGGGGTTT chr3L:16257257-16257377 43 7.60e-05 ACATCCCGTG GCTCGGCT CTAGCTTCGT chr3R:28418093-28418213 11 7.60e-05 CAGGATGCGA GCTCGGCT TTCTGGCCCG chrX:7825978-7826098 39 7.60e-05 AATCGTTGCC GCTCGGCT CCGCTCGTTC chrX:2554001-2554121 80 7.60e-05 AGGATAAGTT GCTCGGCT GCTAGCGAGA chr3L:5351487-5351607 71 7.60e-05 CTTTTTCGGC GCTCGGCT TTTCGTCTTT chr2R:16279885-16280005 16 7.60e-05 GACGGCTTGT GCTCGGCT CCCATTCGGT chrX:13604719-13604839 55 9.10e-05 CGTCTGTAGC CTTCGGTT TTTAGTGCCG chr2L:2903760-2903880 77 9.10e-05 ttcgccgctt cttcggtt cgttcgttcg chr3L:11513626-11513746 19 9.10e-05 CGGGTTCGAA CTTCGGTT TGGGCCCGAC chrX:7629593-7629713 100 9.10e-05 GCCCTTTAAG CTTCGGTT CTTTTTTTCT chr2L:2011569-2011689 74 9.10e-05 TGTCACTCGG CTTCGGTT TTCGGAGTGT chr3L:5423976-5424096 54 9.10e-05 GAATGGAAAA CTTCGGTT TTCGGATACC chr3L:5273376-5273496 58 9.10e-05 GGCTTTCCAG CTTCGGTT TTCCCGACTT chr3R:10601339-10601459 111 1.21e-04 AGTTGTTGAC GTTCGGTT CG chr3L:5754105-5754225 34 1.21e-04 GGTGGTGTAT CTtcggat cgcaatcgga chr2L:9729829-9729949 34 1.21e-04 CTGAGCCCGA CTTCGGAT CTTGGCAGTT chr3L:13993372-13993492 94 1.21e-04 CCGACTATCG GTTCGGTT TGAGAGCGGG chr2R:15164854-15164974 89 1.21e-04 CAAGCGAAGC GTTCGGTT CGATAGGTTG chr3L:2503630-2503750 71 1.21e-04 tttgattcgg cttcggat ttgggttcgg chr3R:10584946-10585066 46 1.21e-04 gtggttcgca gttcggtt tggtcgttcg chr3R:28970405-28970525 52 1.21e-04 GACGCGGATG CTTCGGAT GCTGGCTCGC chr2R:12494859-12494979 78 1.21e-04 AGGCTGGCCC GTTCGGTT GCCAAGGCAA chr3R:28654771-28654891 39 1.36e-04 CCTCTCTGTG GTTCGGAT TTCGCGGTTC chrX:6993489-6993609 69 1.36e-04 TGGCTTCTGG GTTCGGAT GGATTTGTGC chr2L:13260923-13261043 48 1.66e-04 GAAATGTGCT TTTCGGCT TTTCGGCCGA chrX:11729166-11729286 97 1.66e-04 TTCGTGGCAA TTTCGGCT GCCTTTGGGG chrX:20927346-20927466 68 1.66e-04 ATTACGAGTT TTTCGGCT tcgggaatcg chr2R:10381729-10381849 23 1.66e-04 TCGCTCACTC TTTCGGCT GGGCAGCGAG chr3L:1910243-1910363 26 2.51e-04 CTTGCGACGA CTTCGGCA GCGATCGCCG chr2R:8860658-8860778 109 2.51e-04 GGCTCCGCGT CTTCGGGT CTTC chrX:9902551-9902671 46 2.51e-04 GTCCTTTCGC ATTCGGCT TCAGTTGCAT chrX:18356229-18356349 83 2.51e-04 TGCCCCCAAG CTTCGGCA GCACGCTGCA chr3R:4077807-4077927 95 2.51e-04 AACGCCACGA CTTCGGCA TGCCGTTAGT chr2L:7674651-7674771 103 2.51e-04 TTTCGGTGTC CATCGGCT CTCTGCACTC chr3R:10971100-10971220 51 2.51e-04 GAGATGCGAG CTTCGGGT CTCGTGGTCC chr3R:31048783-31048903 76 2.51e-04 AGTGCGCGGA CTTCGGGT CGAGCCGATC chr3R:17762419-17762539 37 2.51e-04 TGGACAACCG CCTCGGTT GAGCGCTCGA chrX:18009542-18009662 19 2.51e-04 CAACATTTCA ATtcggct tcgcgtcgtc chr2R:10087443-10087563 68 2.51e-04 GCTCGGCGAG CTTCGGGT GCCGTCGGTC chr2L:13461606-13461726 106 2.51e-04 CGAGCCCATC CATCGGCT GCGGACT chr3R:11335958-11336078 30 2.51e-04 TACGCAGCAG CTTCGGCA tccgacttcc chr3L:8745314-8745434 87 2.51e-04 CGTCGGGCGC CATCGGCT CCCCGCCGAT chr2R:11172190-11172310 60 3.53e-04 GCGCCAAAGT GTTCGGCA CCACGAATTT chr3L:16394606-16394726 32 3.53e-04 gttgtgctca gctcggtt GGAGCGACCA chr3R:28652825-28652945 110 3.53e-04 TCATCGGGAT CCTCGGAT GCG chr3L:3826194-3826314 70 3.53e-04 tcatacGAGA GTTCGGGT CTTTTTCTCG chr2R:16109369-16109489 62 3.53e-04 GGTGACAGCT GTTCGGGT TTCGTCGTCG chr3R:16604865-16604985 89 3.53e-04 CCGGAGATCG GATCGgct agcagctagc chr2R:20550102-20550222 107 3.53e-04 ATGCCACTAC GATCGGCT AATCCA chr2R:23443995-23444115 33 3.53e-04 ACAATCGACG CCTCGGAT TGCCAGCGCT chr2L:2311588-2311708 32 3.53e-04 GAATTTCCCC GCTCGGTT CTGCGGACTC chr3R:9640436-9640556 25 3.71e-04 cggacttcgt gctcggat ttcggatccg chr3R:5802176-5802296 104 3.71e-04 TTCGTTTGTG GCTCGGAT TCTCGATGC chrX:7607017-7607137 66 4.06e-04 CTGCCCTTTC TCTCGGCT CTCCCGTTAT chr2R:24075995-24076115 84 4.06e-04 GACTTTTGTT CCTCGTCT TGTGTGTGAC chr2L:14040075-14040195 33 4.06e-04 TCGTGCTGGT TCTCGGCT ACAGCAAAGG chr2R:18008692-18008812 59 4.06e-04 TCGTCACGCG TCTCGGCT CTAATCGGGT chr2L:1048041-1048161 38 4.64e-04 AAGCGCCGTT CCTCGGCA GCCCTGCCTC chr2L:8506868-8506988 83 4.64e-04 CGGTCCACGT CCTCGGGT CCGCCCACGA chr2L:15962438-15962558 55 4.64e-04 CTTCGTGGCT CCTCGGGT TTTTGTATTC chrX:17444019-17444139 80 4.64e-04 AGTTCGTACA ACTCGGCT CCGAGCACTC chr3R:22497164-22497284 31 4.64e-04 CGTGATGGAA ACTCGGCT CCTGGTCGGC chr3L:10201816-10201936 33 4.82e-04 CTGGCAGCCA GCTCGTCT TACCAACTTA chr3R:16477155-16477275 48 4.82e-04 GACTCACGAA GCTCGTCT GTCAGAGGAA chr2R:14187215-14187335 1 5.22e-04 . GCTCGGCA AGTGGACTGT chr2R:13106257-13106377 22 5.69e-04 CCGAGTGCAC CTTCGGCC TTTTCTGGCT chr3L:8582281-8582401 66 5.69e-04 ttgacgtcgt cttcgttt ttgttgtcgc chr3R:31097270-31097390 51 5.69e-04 ACTAAATCGA CTTCGTTT GCGCTCTCGG chr3R:28990862-28990982 74 5.69e-04 CTTCGTTTAA CTTCGTTT AGTTAGCCGA chr3L:5476641-5476761 30 5.69e-04 AGCCTTTTGC CTTCGGCC TAAGCTGAAT chrX:16005230-16005350 65 6.11e-04 AAAAAAATTC ATTCGGTT CTTTTCTTCA chr3R:5404134-5404254 72 6.11e-04 GACGATCGCT CTTCGGTA AACGCGATGA chr3R:7394186-7394306 63 6.70e-04 TCCTTGAGTG GTTCGTTT TTCGCATTCA chrX:15443676-15443796 39 6.70e-04 CCCTCCCTCC GTTCGGCC CACACCCCTG chr3L:17689917-17690037 65 6.70e-04 CTCAGTTTCA GTTCGTTT TTGTCACTCG chrX:15125654-15125774 71 6.70e-04 ccTGAGCGGT CTTCGTAT GCTCGGCGGC chr3R:30174589-30174709 41 6.70e-04 GCTCGTGGAG GTTCGGCC ACCTTCGGGG chrX:2580430-2580550 44 7.43e-04 CATCGCATCG CATCGGAT CGGATCCGAT chr2L:8338178-8338298 29 7.43e-04 tttcgtttcg attcgGAT CGGTCCAAAA chrX:16533177-16533297 99 7.43e-04 CGTGCCTCGA ATTCGGAT TCCCGATTCG chr3R:22701909-22702029 22 7.98e-04 GACCCGATCC GATCGGAT ATATCCGAAA chr2R:9836554-9836674 18 7.98e-04 tatcggattg gatcggat gggatcggaA chrX:3930964-3931084 24 9.55e-04 AATCATTTTC CCTCGGCC CGGCGAGCTG chr3R:24663183-24663303 75 9.55e-04 ACTCGTCGTC CTTCGTGT GTCGCAGGAT chr2L:21198772-21198892 67 9.55e-04 AACGAAGCCG CTTCGTGT ATTTTACCCG chr3L:13440850-13440970 45 9.55e-04 ATATTTTCGT TTTCGGCA CATCGTTTCA chr3R:8059112-8059232 88 9.55e-04 AGTTGCTCCG CCTCGGCC GCGTGTCTGT chr3L:6704724-6704844 64 1.08e-03 AAGCTATAGA CATCGGGT CGATCGGAAG chr2L:9485648-9485768 20 1.08e-03 CTTCGTGAGA CATCGGCA GTGAGTCGTC chr3L:1101581-1101701 34 1.08e-03 tcaacatcgg aatcggct tcgctcgtcc chr3R:26390153-26390273 9 1.08e-03 TTTGCAGG CATCGGCA TTGGCAACAG chr3R:30149586-30149706 105 1.08e-03 AACTGGGGGA CTTCGGGA AAAGTGGA chr3R:17265037-17265157 95 1.08e-03 GCCGCATCAG ATTCGGCA TAAGAACCGA chr3R:28047396-28047516 61 1.08e-03 AATGGCTAAC ATTCGGCA AGGATGGAAG chr2L:16000338-16000458 108 1.08e-03 ACAGCATCGG CATCGGGT CCTTC chr3L:18502574-18502694 88 1.20e-03 CCGAAGTGGG GTTCGTGT ATCGTGTATC chr2L:11149142-11149262 43 1.20e-03 GGCAGACTGT GTTCGTGT TACCCGTGGT chr3R:25665739-25665859 6 1.20e-03 TAGCT GCTCGGCC GCTTTTCTTG chrX:7759990-7760110 110 1.20e-03 CACGAAGGCA GCTCGTTT TTA chr3L:18945967-18946087 23 1.20e-03 CGAACGCAGC TCTCGGAT TTTGCTGCTG chr3R:21294000-21294120 20 1.20e-03 GGCCGCGGCA GCTCGTTT TTCAGGCCAA chr3R:14405439-14405559 22 1.20e-03 TTGCAACGGG GCTCGTTT TTTCCCATCA chr2R:16333981-16334101 67 1.20e-03 CTGCGATCCG GTTCGTCA GCCGAACACG chr3R:30560184-30560304 88 1.30e-03 CTTCGGACTG CCTCGGAA AACCTCACCA chr2L:22142835-22142955 46 1.30e-03 tcgccgaccg gatcggca tcAACGTCGT chrX:18186083-18186203 10 1.33e-03 TCGTCGGCG GCTCGTAT CAGCAAGGAC chrX:1507879-1507999 50 1.33e-03 CACGAAGTGG GCTCGTAT TTCCGACGGA chr2R:10350010-10350130 94 1.36e-03 AGTGGCGCAG GCTCGGAA AGCGAAACGG chr2L:14043782-14043902 39 1.48e-03 GTTGTCAGGA TCTCGGCA GTGGAAGTCA chr3L:22034876-22034996 35 1.66e-03 ACCCGAATTG TTTCGGCC CGGCCGAAAA chr3L:6719531-6719651 60 1.66e-03 TTAACGAACG TTTCGGCC GATTGCCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19664870-19664990 1.8e-05 108_[+1]_4 chr2L:13803917-13804037 1.8e-05 60_[+1]_52 chrX:11039875-11039995 1.8e-05 92_[+1]_20 chrX:13444845-13444965 1.8e-05 46_[+1]_66 chr2R:24410533-24410653 1.8e-05 96_[+1]_16 chr2R:9351686-9351806 1.8e-05 62_[+1]_50 chr3L:13803422-13803542 1.8e-05 63_[+1]_49 chr3R:31825717-31825837 1.8e-05 66_[+1]_46 chr3R:29660065-29660185 1.8e-05 17_[+1]_95 chr3R:6259965-6260085 1.8e-05 34_[+1]_78 chrX:1608638-1608758 1.8e-05 62_[+1]_50 chrX:14853314-14853434 1.8e-05 103_[+1]_9 chrX:1103985-1104105 1.8e-05 83_[+1]_29 chr3R:17918029-17918149 1.8e-05 20_[+1]_92 chrX:3574410-3574530 1.8e-05 58_[+1]_54 chr3L:15065045-15065165 1.8e-05 69_[+1]_43 chr2R:9247229-9247349 1.8e-05 68_[+1]_44 chr2L:15552624-15552744 1.8e-05 14_[+1]_98 chr3R:31739502-31739622 1.8e-05 82_[+1]_30 chrX:8501513-8501633 1.8e-05 90_[+1]_22 chr2L:13246000-13246120 3.5e-05 47_[+1]_65 chr2L:17903130-17903250 3.5e-05 88_[+1]_24 chrX:16063683-16063803 3.5e-05 4_[+1]_108 chrX:10158314-10158434 3.5e-05 28_[+1]_84 chr2L:9566802-9566922 3.5e-05 75_[+1]_37 chrX:986020-986140 5.6e-05 76_[+1]_36 chr2L:9415192-9415312 5.6e-05 70_[+1]_42 chrX:11303286-11303406 7.6e-05 46_[+1]_66 chrX:6908201-6908321 7.6e-05 37_[+1]_75 chr2L:5027455-5027575 7.6e-05 34_[+1]_78 chr3L:857187-857307 7.6e-05 100_[+1]_12 chr2R:8537084-8537204 7.6e-05 85_[+1]_27 chr2R:14276036-14276156 7.6e-05 14_[+1]_98 chr3L:22571841-22571961 7.6e-05 45_[+1]_67 chr2R:20424179-20424299 7.6e-05 53_[+1]_59 chr3L:9182192-9182312 7.6e-05 102_[+1]_10 chr3L:16257257-16257377 7.6e-05 42_[+1]_70 chr3R:28418093-28418213 7.6e-05 10_[+1]_102 chrX:7825978-7826098 7.6e-05 38_[+1]_74 chrX:2554001-2554121 7.6e-05 79_[+1]_33 chr3L:5351487-5351607 7.6e-05 70_[+1]_42 chr2R:16279885-16280005 7.6e-05 15_[+1]_97 chrX:13604719-13604839 9.1e-05 54_[+1]_58 chr2L:2903760-2903880 9.1e-05 76_[+1]_36 chr3L:11513626-11513746 9.1e-05 18_[+1]_94 chrX:7629593-7629713 9.1e-05 99_[+1]_13 chr2L:2011569-2011689 9.1e-05 73_[+1]_39 chr3L:5423976-5424096 9.1e-05 53_[+1]_59 chr3L:5273376-5273496 9.1e-05 57_[+1]_55 chr3R:10601339-10601459 0.00012 110_[+1]_2 chr3L:5754105-5754225 0.00012 33_[+1]_79 chr2L:9729829-9729949 0.00012 33_[+1]_79 chr3L:13993372-13993492 0.00012 93_[+1]_19 chr2R:15164854-15164974 0.00012 88_[+1]_24 chr3L:2503630-2503750 0.00012 70_[+1]_42 chr3R:10584946-10585066 0.00012 45_[+1]_67 chr3R:28970405-28970525 0.00012 51_[+1]_61 chr2R:12494859-12494979 0.00012 77_[+1]_35 chr3R:28654771-28654891 0.00014 38_[+1]_74 chrX:6993489-6993609 0.00014 68_[+1]_44 chr2L:13260923-13261043 0.00017 47_[+1]_65 chrX:11729166-11729286 0.00017 96_[+1]_16 chrX:20927346-20927466 0.00017 67_[+1]_45 chr2R:10381729-10381849 0.00017 22_[+1]_90 chr3L:1910243-1910363 0.00025 25_[+1]_87 chr2R:8860658-8860778 0.00025 108_[+1]_4 chrX:9902551-9902671 0.00025 45_[+1]_67 chrX:18356229-18356349 0.00025 82_[+1]_30 chr3R:4077807-4077927 0.00025 94_[+1]_18 chr2L:7674651-7674771 0.00025 102_[+1]_10 chr3R:10971100-10971220 0.00025 50_[+1]_62 chr3R:31048783-31048903 0.00025 75_[+1]_37 chr3R:17762419-17762539 0.00025 36_[+1]_76 chrX:18009542-18009662 0.00025 18_[+1]_94 chr2R:10087443-10087563 0.00025 67_[+1]_45 chr2L:13461606-13461726 0.00025 105_[+1]_7 chr3R:11335958-11336078 0.00025 29_[+1]_83 chr3L:8745314-8745434 0.00025 86_[+1]_26 chr2R:11172190-11172310 0.00035 59_[+1]_53 chr3L:16394606-16394726 0.00035 31_[+1]_81 chr3R:28652825-28652945 0.00035 109_[+1]_3 chr3L:3826194-3826314 0.00035 69_[+1]_43 chr2R:16109369-16109489 0.00035 61_[+1]_51 chr3R:16604865-16604985 0.00035 88_[+1]_24 chr2R:20550102-20550222 0.00035 106_[+1]_6 chr2R:23443995-23444115 0.00035 32_[+1]_80 chr2L:2311588-2311708 0.00035 31_[+1]_81 chr3R:9640436-9640556 0.00037 24_[+1]_88 chr3R:5802176-5802296 0.00037 103_[+1]_9 chrX:7607017-7607137 0.00041 65_[+1]_47 chr2R:24075995-24076115 0.00041 83_[+1]_29 chr2L:14040075-14040195 0.00041 32_[+1]_80 chr2R:18008692-18008812 0.00041 58_[+1]_54 chr2L:1048041-1048161 0.00046 37_[+1]_75 chr2L:8506868-8506988 0.00046 82_[+1]_30 chr2L:15962438-15962558 0.00046 54_[+1]_58 chrX:17444019-17444139 0.00046 79_[+1]_33 chr3R:22497164-22497284 0.00046 30_[+1]_82 chr3L:10201816-10201936 0.00048 32_[+1]_80 chr3R:16477155-16477275 0.00048 47_[+1]_65 chr2R:14187215-14187335 0.00052 [+1]_112 chr2R:13106257-13106377 0.00057 21_[+1]_91 chr3L:8582281-8582401 0.00057 65_[+1]_47 chr3R:31097270-31097390 0.00057 50_[+1]_62 chr3R:28990862-28990982 0.00057 73_[+1]_39 chr3L:5476641-5476761 0.00057 29_[+1]_83 chrX:16005230-16005350 0.00061 64_[+1]_48 chr3R:5404134-5404254 0.00061 71_[+1]_41 chr3R:7394186-7394306 0.00067 62_[+1]_50 chrX:15443676-15443796 0.00067 38_[+1]_74 chr3L:17689917-17690037 0.00067 64_[+1]_48 chrX:15125654-15125774 0.00067 70_[+1]_42 chr3R:30174589-30174709 0.00067 40_[+1]_72 chrX:2580430-2580550 0.00074 43_[+1]_69 chr2L:8338178-8338298 0.00074 28_[+1]_84 chrX:16533177-16533297 0.00074 98_[+1]_14 chr3R:22701909-22702029 0.0008 21_[+1]_91 chr2R:9836554-9836674 0.0008 17_[+1]_95 chrX:3930964-3931084 0.00095 23_[+1]_89 chr3R:24663183-24663303 0.00095 74_[+1]_38 chr2L:21198772-21198892 0.00095 66_[+1]_46 chr3L:13440850-13440970 0.00095 44_[+1]_68 chr3R:8059112-8059232 0.00095 87_[+1]_25 chr3L:6704724-6704844 0.0011 63_[+1]_49 chr2L:9485648-9485768 0.0011 19_[+1]_93 chr3L:1101581-1101701 0.0011 33_[+1]_79 chr3R:26390153-26390273 0.0011 8_[+1]_104 chr3R:30149586-30149706 0.0011 104_[+1]_8 chr3R:17265037-17265157 0.0011 94_[+1]_18 chr3R:28047396-28047516 0.0011 60_[+1]_52 chr2L:16000338-16000458 0.0011 107_[+1]_5 chr3L:18502574-18502694 0.0012 87_[+1]_25 chr2L:11149142-11149262 0.0012 42_[+1]_70 chr3R:25665739-25665859 0.0012 5_[+1]_107 chrX:7759990-7760110 0.0012 109_[+1]_3 chr3L:18945967-18946087 0.0012 22_[+1]_90 chr3R:21294000-21294120 0.0012 19_[+1]_93 chr3R:14405439-14405559 0.0012 21_[+1]_91 chr2R:16333981-16334101 0.0012 66_[+1]_46 chr3R:30560184-30560304 0.0013 87_[+1]_25 chr2L:22142835-22142955 0.0013 45_[+1]_67 chrX:18186083-18186203 0.0013 9_[+1]_103 chrX:1507879-1507999 0.0013 49_[+1]_63 chr2R:10350010-10350130 0.0014 93_[+1]_19 chr2L:14043782-14043902 0.0015 38_[+1]_74 chr3L:22034876-22034996 0.0017 34_[+1]_78 chr3L:6719531-6719651 0.0017 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYTCGGCT width=8 seqs=147 chr3R:19664870-19664990 ( 109) CTTCGGCT 1 chr2L:13803917-13804037 ( 61) CTTCGGCT 1 chrX:11039875-11039995 ( 93) CTTCGGCT 1 chrX:13444845-13444965 ( 47) CTTCGGCT 1 chr2R:24410533-24410653 ( 97) CTTCGGCT 1 chr2R:9351686-9351806 ( 63) CTTCGGCT 1 chr3L:13803422-13803542 ( 64) CTTCGGCT 1 chr3R:31825717-31825837 ( 67) CTTCGGCT 1 chr3R:29660065-29660185 ( 18) CTTCGGCT 1 chr3R:6259965-6260085 ( 35) CTTCGGCT 1 chrX:1608638-1608758 ( 63) CTTCGGCT 1 chrX:14853314-14853434 ( 104) CTTCGGCT 1 chrX:1103985-1104105 ( 84) CTTCGGCT 1 chr3R:17918029-17918149 ( 21) CTTCGGCT 1 chrX:3574410-3574530 ( 59) CTTCGGCT 1 chr3L:15065045-15065165 ( 70) CTTCGGCT 1 chr2R:9247229-9247349 ( 69) CTTCGGCT 1 chr2L:15552624-15552744 ( 15) CTTCGGCT 1 chr3R:31739502-31739622 ( 83) CTTCGGCT 1 chrX:8501513-8501633 ( 91) CTTCGGCT 1 chr2L:13246000-13246120 ( 48) GTTCGGCT 1 chr2L:17903130-17903250 ( 89) GTTCGGCT 1 chrX:16063683-16063803 ( 5) GTTCGGCT 1 chrX:10158314-10158434 ( 29) GTTCGGCT 1 chr2L:9566802-9566922 ( 76) GTTCGGCT 1 chrX:986020-986140 ( 77) CCTCGGCT 1 chr2L:9415192-9415312 ( 71) CCTCGGCT 1 chrX:11303286-11303406 ( 47) GCTCGGCT 1 chrX:6908201-6908321 ( 38) GCTCGGCT 1 chr2L:5027455-5027575 ( 35) GCTCGGCT 1 chr3L:857187-857307 ( 101) GCTCGGCT 1 chr2R:8537084-8537204 ( 86) GCTCGGCT 1 chr2R:14276036-14276156 ( 15) GCTCGGCT 1 chr3L:22571841-22571961 ( 46) GCTCGGCT 1 chr2R:20424179-20424299 ( 54) GCTCGGCT 1 chr3L:9182192-9182312 ( 103) GCTCGGCT 1 chr3L:16257257-16257377 ( 43) GCTCGGCT 1 chr3R:28418093-28418213 ( 11) GCTCGGCT 1 chrX:7825978-7826098 ( 39) GCTCGGCT 1 chrX:2554001-2554121 ( 80) GCTCGGCT 1 chr3L:5351487-5351607 ( 71) GCTCGGCT 1 chr2R:16279885-16280005 ( 16) GCTCGGCT 1 chrX:13604719-13604839 ( 55) CTTCGGTT 1 chr2L:2903760-2903880 ( 77) CTTCGGTT 1 chr3L:11513626-11513746 ( 19) CTTCGGTT 1 chrX:7629593-7629713 ( 100) CTTCGGTT 1 chr2L:2011569-2011689 ( 74) CTTCGGTT 1 chr3L:5423976-5424096 ( 54) CTTCGGTT 1 chr3L:5273376-5273496 ( 58) CTTCGGTT 1 chr3R:10601339-10601459 ( 111) GTTCGGTT 1 chr3L:5754105-5754225 ( 34) CTTCGGAT 1 chr2L:9729829-9729949 ( 34) CTTCGGAT 1 chr3L:13993372-13993492 ( 94) GTTCGGTT 1 chr2R:15164854-15164974 ( 89) GTTCGGTT 1 chr3L:2503630-2503750 ( 71) CTTCGGAT 1 chr3R:10584946-10585066 ( 46) GTTCGGTT 1 chr3R:28970405-28970525 ( 52) CTTCGGAT 1 chr2R:12494859-12494979 ( 78) GTTCGGTT 1 chr3R:28654771-28654891 ( 39) GTTCGGAT 1 chrX:6993489-6993609 ( 69) GTTCGGAT 1 chr2L:13260923-13261043 ( 48) TTTCGGCT 1 chrX:11729166-11729286 ( 97) TTTCGGCT 1 chrX:20927346-20927466 ( 68) TTTCGGCT 1 chr2R:10381729-10381849 ( 23) TTTCGGCT 1 chr3L:1910243-1910363 ( 26) CTTCGGCA 1 chr2R:8860658-8860778 ( 109) CTTCGGGT 1 chrX:9902551-9902671 ( 46) ATTCGGCT 1 chrX:18356229-18356349 ( 83) CTTCGGCA 1 chr3R:4077807-4077927 ( 95) CTTCGGCA 1 chr2L:7674651-7674771 ( 103) CATCGGCT 1 chr3R:10971100-10971220 ( 51) CTTCGGGT 1 chr3R:31048783-31048903 ( 76) CTTCGGGT 1 chr3R:17762419-17762539 ( 37) CCTCGGTT 1 chrX:18009542-18009662 ( 19) ATTCGGCT 1 chr2R:10087443-10087563 ( 68) CTTCGGGT 1 chr2L:13461606-13461726 ( 106) CATCGGCT 1 chr3R:11335958-11336078 ( 30) CTTCGGCA 1 chr3L:8745314-8745434 ( 87) CATCGGCT 1 chr2R:11172190-11172310 ( 60) GTTCGGCA 1 chr3L:16394606-16394726 ( 32) GCTCGGTT 1 chr3R:28652825-28652945 ( 110) CCTCGGAT 1 chr3L:3826194-3826314 ( 70) GTTCGGGT 1 chr2R:16109369-16109489 ( 62) GTTCGGGT 1 chr3R:16604865-16604985 ( 89) GATCGGCT 1 chr2R:20550102-20550222 ( 107) GATCGGCT 1 chr2R:23443995-23444115 ( 33) CCTCGGAT 1 chr2L:2311588-2311708 ( 32) GCTCGGTT 1 chr3R:9640436-9640556 ( 25) GCTCGGAT 1 chr3R:5802176-5802296 ( 104) GCTCGGAT 1 chrX:7607017-7607137 ( 66) TCTCGGCT 1 chr2R:24075995-24076115 ( 84) CCTCGTCT 1 chr2L:14040075-14040195 ( 33) TCTCGGCT 1 chr2R:18008692-18008812 ( 59) TCTCGGCT 1 chr2L:1048041-1048161 ( 38) CCTCGGCA 1 chr2L:8506868-8506988 ( 83) CCTCGGGT 1 chr2L:15962438-15962558 ( 55) CCTCGGGT 1 chrX:17444019-17444139 ( 80) ACTCGGCT 1 chr3R:22497164-22497284 ( 31) ACTCGGCT 1 chr3L:10201816-10201936 ( 33) GCTCGTCT 1 chr3R:16477155-16477275 ( 48) GCTCGTCT 1 chr2R:14187215-14187335 ( 1) GCTCGGCA 1 chr2R:13106257-13106377 ( 22) CTTCGGCC 1 chr3L:8582281-8582401 ( 66) CTTCGTTT 1 chr3R:31097270-31097390 ( 51) CTTCGTTT 1 chr3R:28990862-28990982 ( 74) CTTCGTTT 1 chr3L:5476641-5476761 ( 30) CTTCGGCC 1 chrX:16005230-16005350 ( 65) ATTCGGTT 1 chr3R:5404134-5404254 ( 72) CTTCGGTA 1 chr3R:7394186-7394306 ( 63) GTTCGTTT 1 chrX:15443676-15443796 ( 39) GTTCGGCC 1 chr3L:17689917-17690037 ( 65) GTTCGTTT 1 chrX:15125654-15125774 ( 71) CTTCGTAT 1 chr3R:30174589-30174709 ( 41) GTTCGGCC 1 chrX:2580430-2580550 ( 44) CATCGGAT 1 chr2L:8338178-8338298 ( 29) ATTCGGAT 1 chrX:16533177-16533297 ( 99) ATTCGGAT 1 chr3R:22701909-22702029 ( 22) GATCGGAT 1 chr2R:9836554-9836674 ( 18) GATCGGAT 1 chrX:3930964-3931084 ( 24) CCTCGGCC 1 chr3R:24663183-24663303 ( 75) CTTCGTGT 1 chr2L:21198772-21198892 ( 67) CTTCGTGT 1 chr3L:13440850-13440970 ( 45) TTTCGGCA 1 chr3R:8059112-8059232 ( 88) CCTCGGCC 1 chr3L:6704724-6704844 ( 64) CATCGGGT 1 chr2L:9485648-9485768 ( 20) CATCGGCA 1 chr3L:1101581-1101701 ( 34) AATCGGCT 1 chr3R:26390153-26390273 ( 9) CATCGGCA 1 chr3R:30149586-30149706 ( 105) CTTCGGGA 1 chr3R:17265037-17265157 ( 95) ATTCGGCA 1 chr3R:28047396-28047516 ( 61) ATTCGGCA 1 chr2L:16000338-16000458 ( 108) CATCGGGT 1 chr3L:18502574-18502694 ( 88) GTTCGTGT 1 chr2L:11149142-11149262 ( 43) GTTCGTGT 1 chr3R:25665739-25665859 ( 6) GCTCGGCC 1 chrX:7759990-7760110 ( 110) GCTCGTTT 1 chr3L:18945967-18946087 ( 23) TCTCGGAT 1 chr3R:21294000-21294120 ( 20) GCTCGTTT 1 chr3R:14405439-14405559 ( 22) GCTCGTTT 1 chr2R:16333981-16334101 ( 67) GTTCGTCA 1 chr3R:30560184-30560304 ( 88) CCTCGGAA 1 chr2L:22142835-22142955 ( 46) GATCGGCA 1 chrX:18186083-18186203 ( 10) GCTCGTAT 1 chrX:1507879-1507999 ( 50) GCTCGTAT 1 chr2R:10350010-10350130 ( 94) GCTCGGAA 1 chr2L:14043782-14043902 ( 39) TCTCGGCA 1 chr3L:22034876-22034996 ( 35) TTTCGGCC 1 chr3L:6719531-6719651 ( 60) TTTCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.00179 E= 2.5e-040 -176 80 50 -150 -127 28 -1384 132 -1384 -1384 -1384 211 -1384 189 -1384 -1384 -1384 -1384 190 -1384 -1384 -1384 170 -84 -69 112 -140 -44 -83 -214 -1384 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 147 E= 2.5e-040 0.068027 0.469388 0.380952 0.081633 0.095238 0.326531 0.000000 0.578231 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.870748 0.129252 0.142857 0.585034 0.102041 0.170068 0.129252 0.061224 0.000000 0.809524 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYTCGGCT MEME-1 regular expression -------------------------------------------------------------------------------- [CG][TC]TCGGCT -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF VAVCCGAA MEME-2 width = 8 sites = 121 llr = 882 E-value = 7.5e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4a33::a6 pos.-specific C 2:27a::1 probability G 4:4::a:3 matrix T ::1::::: bits 2.1 * * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 * **** (10.5 bits) 0.8 * ***** 0.6 * ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel AAGCCGAA consensus G AA G sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10201816-10201936 84 1.48e-05 GGCTCAGGAA AAGCCGAA GCTCGGCCCG chr3R:20484553-20484673 93 1.48e-05 TCGTGTCCAT AAGCCGAA GGTACAAGTC chr2L:19605506-19605626 107 1.48e-05 CGGCGCCTAA AAGCCGAA CCTTTC chr2R:24727509-24727629 4 1.48e-05 AAA AAGCCGAA AAAACGGTCG chr3L:1842092-1842212 60 1.48e-05 GAGTCACAAA AAGCCGAA TGCCAGTCGG chr3L:22571841-22571961 113 1.48e-05 AGTTATGCAA AAGCCGAA chr3R:10972278-10972398 30 1.48e-05 ACCCGAGCGA AAGCCGAA GGATCCGAAT chr3R:8059112-8059232 35 1.48e-05 CGAAGCTGGC AAGCCGAA GTGCGAATAT chrX:12868744-12868864 96 1.48e-05 GCCGAAGGTA AAGCCGAA CTCGATTCCG chr2R:12494859-12494979 61 1.48e-05 TGCTGAGTCC AAGCCGAA GGCTGGCCCG chr3R:12728058-12728178 65 4.46e-05 GCACACAGCA GAGCCGAA CCCAACTTTC chr3R:10601339-10601459 66 4.46e-05 ACCGAGTCGA AAACCGAA ATAAAAACGA chrX:15496209-15496329 35 4.46e-05 TCCGAAGATG AAACCGAA ATGGCAGCGA chr2L:11928620-11928740 85 4.46e-05 CCGATTGCAT GAGCCGAA GCGGCTTTTT chrX:16005230-16005350 44 4.46e-05 TTTGCCAAAC GAGCCGAA CACAAAAAAA chr3R:5404134-5404254 94 4.46e-05 CGATGAAAGA AAACCGAA AGCCGTAAAA chr3R:12158590-12158710 83 4.46e-05 GGCCCGAAGT GAGCCGAA GAGTTTGGCT chr2L:9746491-9746611 72 4.46e-05 GCGACGAGCT GAGCCGAA AGGATAACGA chr3L:5476641-5476761 107 4.46e-05 GTCGCTCGGA AAACCGAA GGGAAA chr3R:21294000-21294120 51 4.46e-05 GGGCCGATAA GAGCCGAA GGACAGGAAC chr3L:4046454-4046574 58 4.46e-05 GACGAACCCA GAGCCGAA GCTTTGGCGC chrX:12128155-12128275 2 4.46e-05 A AAACCGAA TGGTGTACTT chr3R:15875706-15875826 39 4.46e-05 TCGACTCGCC AAACCGAA CTGAACGCcc chr3R:25856045-25856165 35 4.46e-05 GAGCGAGGGA AAACCGAA TGCCGAAGCG chr3R:25209375-25209495 53 5.94e-05 CGAATTCTAC GAACCGAA CCAGCATGCG chr3L:17002631-17002751 89 5.94e-05 taaccgaacc gaaccgaa tccgagtccc chr2R:12895631-12895751 19 5.94e-05 AAAAcgaacc gaaccgaa tcgtatcgaa chrX:2950588-2950708 14 5.94e-05 accccgaacc gaaccgaa ccgaaccgaa chr2L:19755205-19755325 82 5.94e-05 ACGAGCGGTG gaaccgaa tcagaatccg chr3R:13279586-13279706 61 5.94e-05 atCGTCTTAA GAACCGAA GCGTCGGCAG chr3R:17265037-17265157 106 5.94e-05 TTCGGCATAA GAACCGAA CTTGCAT chrX:18186083-18186203 59 5.94e-05 GCTCCGCTCC GAACCGAA GCTTTTCAGT chr3R:5802176-5802296 59 5.94e-05 aaaacgaacc gaaccgaa ccgaatcgaa chr3R:29377458-29377578 43 7.42e-05 AGCCGCTGGA AACCCGAA GTCGGCCACG chrX:21338995-21339115 63 7.42e-05 CCCTTCGAAA AACCCGAA CCCCATCCAA chr2L:1048041-1048161 2 1.09e-04 T CAGCCGAA GGACTGCCTG chr3L:18502574-18502694 59 1.09e-04 TAAAAGGCAG CAGCCGAA CAGCTGTTCA chr3L:22034876-22034996 24 1.09e-04 CACTCGTTCC GACCCGAA TTGTTTCGGC chr2L:1043270-1043390 20 1.09e-04 CCGACTGTTG CAGCCGAA GCCACTTTCC chrX:18356229-18356349 53 1.09e-04 CAGCCGATGC GACCCGAA CGCCCGAGTC chrX:14222160-14222280 73 1.09e-04 AAATCTGAAA GACCCGAA TGGTCATCTC chrX:14591650-14591770 86 1.09e-04 gccGGAAAAA CAGCCGAA CAGACGAAAA chr3L:17633308-17633428 19 1.09e-04 GCGGCGGCGC CAGCCGAA CTGGCCTCGC chrX:294957-295077 86 1.09e-04 ACCGAAGGTC GACCCGAA GCTGAATGCG chr2L:16000338-16000458 65 1.09e-04 CGAGTACGTA CAGCCGAA TTCCTTCGAT chrX:6192537-6192657 79 1.24e-04 TTCACGAACA CAACCGAA CACGAACGGA chrX:986020-986140 66 1.24e-04 ACACGACGGG CAACCGAA GGACCTCGGC chr3R:28418093-28418213 30 1.24e-04 TCTGGCCCGT CAACCGAA AACAGAACAT chr2L:13260923-13261043 9 1.36e-04 ATGTACTG AAGACGAA GGAGCATTTA chr3L:1910243-1910363 63 1.79e-04 GAGTGCTTTT AAGCCGAG CCGATCGTTC chr3R:19664870-19664990 5 1.79e-04 AATG AAAACGAA ACGAAATGCT chr3L:18860589-18860709 40 1.79e-04 AGCCGAGCGA AAGCCGAG CTGCGGTCGT chrX:3930964-3931084 52 1.79e-04 TGCATCGGAA AAGCCGAG TCCGGGCGGC chr2L:17102445-17102565 101 1.79e-04 AACGAGAGCA AAGCCGAG GCAGAGAGAG chr2L:6874073-6874193 97 1.79e-04 GCTTGCGCCA AAAACGAA ATACGAAATT chr3R:10971100-10971220 11 1.79e-04 GAGCCAGAGA AAGCCGAG AGAAAGTTCA chrX:2888332-2888452 66 1.79e-04 GCCGAAGCGA AAGCCGAG TGGAAATTCC chr3R:12915950-12916070 27 1.79e-04 CTCCCGACTT AAAACGAA GCTGTGTCGG chr2L:9886239-9886359 93 1.79e-04 CGGAAAACGA AAAACGAA GCTTCCAGCC chrX:19348371-19348491 17 1.79e-04 aatgccgaga aagccgag aaagTAGACA chr3R:8768113-8768233 72 1.79e-04 AAACGCTCGA AAGCCGAG GACGGACTGA chrX:12568431-12568551 61 2.27e-04 CAGCAGCTGA GAGCCGAG GACACGAGGA chr3R:23699002-23699122 70 2.27e-04 CAGACGAACC GAGCCGAG TAAACGGCCC chrX:11695977-11696097 41 2.27e-04 gaggcggcaa gaaacgaa aagaaaagaa chrX:11293706-11293826 40 2.27e-04 AGCGAgaagc gaaacgaa gtgagtcgaa chr3R:5771894-5772014 77 2.27e-04 TTTCCGAGGC GAAACGAA GCTGAGCGAA chr2R:24390279-24390399 76 2.27e-04 GAGAGAGCCA GAGCCGAG CAGCAGCCGA chrX:2554001-2554121 12 2.27e-04 AAATGACCGA GAGCCGAG CAACGTTCGT chr2R:16279885-16280005 110 2.27e-04 TATATATGAC GAGCCGAG CAG chrX:7607017-7607137 19 2.61e-04 GCCGACGGCG GAACCGAG CATCGTTTTT chr2R:15164854-15164974 1 2.61e-04 . CACCCGAA TGGTTAACAG chr3R:17366162-17366282 35 2.61e-04 CATATTTCGT CACCCGAA CGACGTCCTC chrX:17444019-17444139 55 2.61e-04 ATGATGCTGC CACCCGAA GCCGTGCAGT chr2L:10964118-10964238 102 2.61e-04 GTTCCGATGT GAACCGAG TCCTGCCAGC chr2R:10234764-10234884 50 2.74e-04 TGGAAGCCAC AACACGAA GGAAAACGAG chr2L:8325224-8325344 69 2.74e-04 ATGTACCACG AACACGAA TTGCGGACAG chr3L:13440850-13440970 16 2.74e-04 ACTCTACACG AACACGAA AACGATTCAA chr2R:16333981-16334101 79 2.74e-04 TCGTCAGCCG AACACGAA TCCGTCCGGT chrX:19844406-19844526 20 3.33e-04 ACGCAAACTA aatccgaa tccgaaacgg chr3R:12595696-12595816 21 3.33e-04 gGCTGGCTGA CAGACGAA TGAACCACCG chr3R:5959530-5959650 7 3.33e-04 CGTTCC GACACGAA TACGAAACTG chrX:1507879-1507999 38 3.33e-04 CATCGCGAAG GACACGAA GTGGGCTCGT chrX:13444845-13444965 35 4.01e-04 TTTTGTGCCA CAAACGAA CGCACTTCGG chr2R:23818941-23819061 46 4.01e-04 TCGTGAAAAT GACCCGAG GGTCCGAGGA chr2R:16259829-16259949 71 4.01e-04 aaGCTGCTGG CAGCCGAG TCCGCGTCCG chr3R:18950164-18950284 20 4.01e-04 GCCGTGGCAG CAGCCGAG CGTAGTCAGT chrX:15973300-15973420 43 4.01e-04 AAACCAAGCC CAGCCGAG TGGCCACATC chr2L:5823940-5824060 89 4.01e-04 CGCGGCATCT CAAACGAA TCGGACGCGA chr3R:31739502-31739622 49 4.01e-04 TAATCCTCTC CAGCCGAG GAGAGTGCAT chr2L:13461606-13461726 92 4.33e-04 TCCGATTCGA AAGACGAG CCCATCCATC chr2L:20484255-20484375 54 4.63e-04 gatccgTGCC GAGACGAG CCGGTACAGC chrX:9902551-9902671 23 4.93e-04 CTCCACAGGA CACACGAA GCAGGGTCCT chr3R:26390153-26390273 78 4.93e-04 AAGCAGCCGA CACACGAA CGGAACGGAA chr3L:1022927-1023047 19 4.93e-04 GCAGCTGCCC CACACGAA CCCACGAGTC chr3R:31048783-31048903 34 4.93e-04 CCCGAAACGG CACACGAA CCGATCCACG chr3R:17918029-17918149 85 4.93e-04 cacacactgg cacacGAA GGGGAGCGAT chr3R:14405439-14405559 90 4.93e-04 CGAAGCAACG GAAACGAG CGAGCGAACA chr3L:2282751-2282871 42 5.45e-04 CGCGCAGGAA AAGCCGAC CGTCGATTTC chr2L:8506868-8506988 49 5.45e-04 GTTCAGGTGG CACCCGAG TGGAAACTCC chr2R:23443995-23444115 97 5.45e-04 CGAGCGAACG AAGCCGAC TTTAAGGCTG chr2L:13246000-13246120 88 5.80e-04 TAAAGCCTTC AAACCGAC CGATTTTGTT chrX:1410434-1410554 55 5.80e-04 AACAGCCGGC AAACCGAC ATTCGCGACG chr3R:16477155-16477275 29 5.80e-04 GGATGCGAAA GAGCCGAC AGACTCACGA chr2L:9743959-9744079 87 5.80e-04 TTGGGCTGGA AAACCGAC AGCCAACGAC chr2L:2109885-2110005 92 5.80e-04 AAAAAGTTCA AAACCGAC TAGGACAACA chr2L:18275803-18275923 55 6.23e-04 CATCAGGCCA GAACCGAC GAGGCCAGGA chr3L:5423976-5424096 39 6.23e-04 AAAGCGAGTG AATACGAA TGGAAAACTT chr2R:14187215-14187335 41 6.85e-04 GTCGTTCACT GATACGAA AGCTTTTGTG chr3L:18945967-18946087 103 6.85e-04 TTATAAGGAA AATCCGAG TGGAGCTTTT chr2L:2011569-2011689 47 6.85e-04 CCTTTCGCGG GACACGAG CGTTTTCTGT chr2R:14289395-14289515 30 6.85e-04 gataccatac gatacgaA GCATTCCATT chr3L:9182192-9182312 71 6.85e-04 GTGCCGACAG GACACGAG GATTCTCTCG chr2R:18007841-18007961 62 6.85e-04 GCACGCGACT GACACGAG GACCCAAGGA chr2L:12539978-12540098 74 7.17e-04 gatacgatcc gatccgaG GACTAgcgac chr3L:8745314-8745434 107 7.17e-04 CCGCCGATCG GATCCGAG TGGGAT chr2L:14972316-14972436 103 7.17e-04 GAACGAGCCC GATCCGAG CTGCAGGATA chr3L:22638021-22638141 12 7.75e-04 GTCCTTGGGG CAGCCGAC GACGAGGCGA chr3R:29660065-29660185 59 8.38e-04 GGTAGGATAA CACACGAG GACGATGATG chr3R:29068124-29068244 52 9.00e-04 AGACGATGTG GAAACGAC GACGTCGACA chr2L:9729829-9729949 71 9.33e-04 TCGGTGCTGT AATACGAG GGTTTATATA chr2R:8537084-8537204 16 9.33e-04 CTTTCGTTTT CACCCGAC TCCTGTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10201816-10201936 1.5e-05 83_[+2]_29 chr3R:20484553-20484673 1.5e-05 92_[+2]_20 chr2L:19605506-19605626 1.5e-05 106_[+2]_6 chr2R:24727509-24727629 1.5e-05 3_[+2]_109 chr3L:1842092-1842212 1.5e-05 59_[+2]_53 chr3L:22571841-22571961 1.5e-05 112_[+2] chr3R:10972278-10972398 1.5e-05 29_[+2]_83 chr3R:8059112-8059232 1.5e-05 34_[+2]_78 chrX:12868744-12868864 1.5e-05 95_[+2]_17 chr2R:12494859-12494979 1.5e-05 60_[+2]_52 chr3R:12728058-12728178 4.5e-05 64_[+2]_48 chr3R:10601339-10601459 4.5e-05 65_[+2]_47 chrX:15496209-15496329 4.5e-05 34_[+2]_78 chr2L:11928620-11928740 4.5e-05 84_[+2]_28 chrX:16005230-16005350 4.5e-05 43_[+2]_69 chr3R:5404134-5404254 4.5e-05 93_[+2]_19 chr3R:12158590-12158710 4.5e-05 82_[+2]_30 chr2L:9746491-9746611 4.5e-05 71_[+2]_41 chr3L:5476641-5476761 4.5e-05 106_[+2]_6 chr3R:21294000-21294120 4.5e-05 50_[+2]_62 chr3L:4046454-4046574 4.5e-05 57_[+2]_55 chrX:12128155-12128275 4.5e-05 1_[+2]_111 chr3R:15875706-15875826 4.5e-05 38_[+2]_74 chr3R:25856045-25856165 4.5e-05 34_[+2]_78 chr3R:25209375-25209495 5.9e-05 52_[+2]_60 chr3L:17002631-17002751 5.9e-05 88_[+2]_24 chr2R:12895631-12895751 5.9e-05 18_[+2]_94 chrX:2950588-2950708 5.9e-05 13_[+2]_99 chr2L:19755205-19755325 5.9e-05 81_[+2]_31 chr3R:13279586-13279706 5.9e-05 60_[+2]_52 chr3R:17265037-17265157 5.9e-05 105_[+2]_7 chrX:18186083-18186203 5.9e-05 58_[+2]_54 chr3R:5802176-5802296 5.9e-05 58_[+2]_54 chr3R:29377458-29377578 7.4e-05 42_[+2]_70 chrX:21338995-21339115 7.4e-05 62_[+2]_50 chr2L:1048041-1048161 0.00011 1_[+2]_111 chr3L:18502574-18502694 0.00011 58_[+2]_54 chr3L:22034876-22034996 0.00011 23_[+2]_89 chr2L:1043270-1043390 0.00011 19_[+2]_93 chrX:18356229-18356349 0.00011 52_[+2]_60 chrX:14222160-14222280 0.00011 72_[+2]_40 chrX:14591650-14591770 0.00011 85_[+2]_27 chr3L:17633308-17633428 0.00011 18_[+2]_94 chrX:294957-295077 0.00011 85_[+2]_27 chr2L:16000338-16000458 0.00011 64_[+2]_48 chrX:6192537-6192657 0.00012 78_[+2]_34 chrX:986020-986140 0.00012 65_[+2]_47 chr3R:28418093-28418213 0.00012 29_[+2]_83 chr2L:13260923-13261043 0.00014 8_[+2]_104 chr3L:1910243-1910363 0.00018 62_[+2]_50 chr3R:19664870-19664990 0.00018 4_[+2]_108 chr3L:18860589-18860709 0.00018 39_[+2]_73 chrX:3930964-3931084 0.00018 51_[+2]_61 chr2L:17102445-17102565 0.00018 100_[+2]_12 chr2L:6874073-6874193 0.00018 96_[+2]_16 chr3R:10971100-10971220 0.00018 10_[+2]_102 chrX:2888332-2888452 0.00018 65_[+2]_47 chr3R:12915950-12916070 0.00018 26_[+2]_86 chr2L:9886239-9886359 0.00018 92_[+2]_20 chrX:19348371-19348491 0.00018 16_[+2]_96 chr3R:8768113-8768233 0.00018 71_[+2]_41 chrX:12568431-12568551 0.00023 60_[+2]_52 chr3R:23699002-23699122 0.00023 69_[+2]_43 chrX:11695977-11696097 0.00023 40_[+2]_72 chrX:11293706-11293826 0.00023 39_[+2]_73 chr3R:5771894-5772014 0.00023 76_[+2]_36 chr2R:24390279-24390399 0.00023 75_[+2]_37 chrX:2554001-2554121 0.00023 11_[+2]_101 chr2R:16279885-16280005 0.00023 109_[+2]_3 chrX:7607017-7607137 0.00026 18_[+2]_94 chr2R:15164854-15164974 0.00026 [+2]_112 chr3R:17366162-17366282 0.00026 34_[+2]_78 chrX:17444019-17444139 0.00026 54_[+2]_58 chr2L:10964118-10964238 0.00026 101_[+2]_11 chr2R:10234764-10234884 0.00027 49_[+2]_63 chr2L:8325224-8325344 0.00027 68_[+2]_44 chr3L:13440850-13440970 0.00027 15_[+2]_97 chr2R:16333981-16334101 0.00027 78_[+2]_34 chrX:19844406-19844526 0.00033 19_[+2]_93 chr3R:12595696-12595816 0.00033 20_[+2]_92 chr3R:5959530-5959650 0.00033 6_[+2]_106 chrX:1507879-1507999 0.00033 37_[+2]_75 chrX:13444845-13444965 0.0004 34_[+2]_78 chr2R:23818941-23819061 0.0004 45_[+2]_67 chr2R:16259829-16259949 0.0004 70_[+2]_42 chr3R:18950164-18950284 0.0004 19_[+2]_93 chrX:15973300-15973420 0.0004 42_[+2]_70 chr2L:5823940-5824060 0.0004 88_[+2]_24 chr3R:31739502-31739622 0.0004 48_[+2]_64 chr2L:13461606-13461726 0.00043 91_[+2]_21 chr2L:20484255-20484375 0.00046 53_[+2]_59 chrX:9902551-9902671 0.00049 22_[+2]_90 chr3R:26390153-26390273 0.00049 77_[+2]_35 chr3L:1022927-1023047 0.00049 18_[+2]_94 chr3R:31048783-31048903 0.00049 33_[+2]_79 chr3R:17918029-17918149 0.00049 84_[+2]_28 chr3R:14405439-14405559 0.00049 89_[+2]_23 chr3L:2282751-2282871 0.00055 41_[+2]_71 chr2L:8506868-8506988 0.00055 48_[+2]_64 chr2R:23443995-23444115 0.00055 96_[+2]_16 chr2L:13246000-13246120 0.00058 87_[+2]_25 chrX:1410434-1410554 0.00058 54_[+2]_58 chr3R:16477155-16477275 0.00058 28_[+2]_84 chr2L:9743959-9744079 0.00058 86_[+2]_26 chr2L:2109885-2110005 0.00058 91_[+2]_21 chr2L:18275803-18275923 0.00062 54_[+2]_58 chr3L:5423976-5424096 0.00062 38_[+2]_74 chr2R:14187215-14187335 0.00069 40_[+2]_72 chr3L:18945967-18946087 0.00069 102_[+2]_10 chr2L:2011569-2011689 0.00069 46_[+2]_66 chr2R:14289395-14289515 0.00069 29_[+2]_83 chr3L:9182192-9182312 0.00069 70_[+2]_42 chr2R:18007841-18007961 0.00069 61_[+2]_51 chr2L:12539978-12540098 0.00072 73_[+2]_39 chr3L:8745314-8745434 0.00072 106_[+2]_6 chr2L:14972316-14972436 0.00072 102_[+2]_10 chr3L:22638021-22638141 0.00078 11_[+2]_101 chr3R:29660065-29660185 0.00084 58_[+2]_54 chr3R:29068124-29068244 0.0009 51_[+2]_61 chr2L:9729829-9729949 0.00093 70_[+2]_42 chr2R:8537084-8537204 0.00093 15_[+2]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAVCCGAA width=8 seqs=121 chr3L:10201816-10201936 ( 84) AAGCCGAA 1 chr3R:20484553-20484673 ( 93) AAGCCGAA 1 chr2L:19605506-19605626 ( 107) AAGCCGAA 1 chr2R:24727509-24727629 ( 4) AAGCCGAA 1 chr3L:1842092-1842212 ( 60) AAGCCGAA 1 chr3L:22571841-22571961 ( 113) AAGCCGAA 1 chr3R:10972278-10972398 ( 30) AAGCCGAA 1 chr3R:8059112-8059232 ( 35) AAGCCGAA 1 chrX:12868744-12868864 ( 96) AAGCCGAA 1 chr2R:12494859-12494979 ( 61) AAGCCGAA 1 chr3R:12728058-12728178 ( 65) GAGCCGAA 1 chr3R:10601339-10601459 ( 66) AAACCGAA 1 chrX:15496209-15496329 ( 35) AAACCGAA 1 chr2L:11928620-11928740 ( 85) GAGCCGAA 1 chrX:16005230-16005350 ( 44) GAGCCGAA 1 chr3R:5404134-5404254 ( 94) AAACCGAA 1 chr3R:12158590-12158710 ( 83) GAGCCGAA 1 chr2L:9746491-9746611 ( 72) GAGCCGAA 1 chr3L:5476641-5476761 ( 107) AAACCGAA 1 chr3R:21294000-21294120 ( 51) GAGCCGAA 1 chr3L:4046454-4046574 ( 58) GAGCCGAA 1 chrX:12128155-12128275 ( 2) AAACCGAA 1 chr3R:15875706-15875826 ( 39) AAACCGAA 1 chr3R:25856045-25856165 ( 35) AAACCGAA 1 chr3R:25209375-25209495 ( 53) GAACCGAA 1 chr3L:17002631-17002751 ( 89) GAACCGAA 1 chr2R:12895631-12895751 ( 19) GAACCGAA 1 chrX:2950588-2950708 ( 14) GAACCGAA 1 chr2L:19755205-19755325 ( 82) GAACCGAA 1 chr3R:13279586-13279706 ( 61) GAACCGAA 1 chr3R:17265037-17265157 ( 106) GAACCGAA 1 chrX:18186083-18186203 ( 59) GAACCGAA 1 chr3R:5802176-5802296 ( 59) GAACCGAA 1 chr3R:29377458-29377578 ( 43) AACCCGAA 1 chrX:21338995-21339115 ( 63) AACCCGAA 1 chr2L:1048041-1048161 ( 2) CAGCCGAA 1 chr3L:18502574-18502694 ( 59) CAGCCGAA 1 chr3L:22034876-22034996 ( 24) GACCCGAA 1 chr2L:1043270-1043390 ( 20) CAGCCGAA 1 chrX:18356229-18356349 ( 53) GACCCGAA 1 chrX:14222160-14222280 ( 73) GACCCGAA 1 chrX:14591650-14591770 ( 86) CAGCCGAA 1 chr3L:17633308-17633428 ( 19) CAGCCGAA 1 chrX:294957-295077 ( 86) GACCCGAA 1 chr2L:16000338-16000458 ( 65) CAGCCGAA 1 chrX:6192537-6192657 ( 79) CAACCGAA 1 chrX:986020-986140 ( 66) CAACCGAA 1 chr3R:28418093-28418213 ( 30) CAACCGAA 1 chr2L:13260923-13261043 ( 9) AAGACGAA 1 chr3L:1910243-1910363 ( 63) AAGCCGAG 1 chr3R:19664870-19664990 ( 5) AAAACGAA 1 chr3L:18860589-18860709 ( 40) AAGCCGAG 1 chrX:3930964-3931084 ( 52) AAGCCGAG 1 chr2L:17102445-17102565 ( 101) AAGCCGAG 1 chr2L:6874073-6874193 ( 97) AAAACGAA 1 chr3R:10971100-10971220 ( 11) AAGCCGAG 1 chrX:2888332-2888452 ( 66) AAGCCGAG 1 chr3R:12915950-12916070 ( 27) AAAACGAA 1 chr2L:9886239-9886359 ( 93) AAAACGAA 1 chrX:19348371-19348491 ( 17) AAGCCGAG 1 chr3R:8768113-8768233 ( 72) AAGCCGAG 1 chrX:12568431-12568551 ( 61) GAGCCGAG 1 chr3R:23699002-23699122 ( 70) GAGCCGAG 1 chrX:11695977-11696097 ( 41) GAAACGAA 1 chrX:11293706-11293826 ( 40) GAAACGAA 1 chr3R:5771894-5772014 ( 77) GAAACGAA 1 chr2R:24390279-24390399 ( 76) GAGCCGAG 1 chrX:2554001-2554121 ( 12) GAGCCGAG 1 chr2R:16279885-16280005 ( 110) GAGCCGAG 1 chrX:7607017-7607137 ( 19) GAACCGAG 1 chr2R:15164854-15164974 ( 1) CACCCGAA 1 chr3R:17366162-17366282 ( 35) CACCCGAA 1 chrX:17444019-17444139 ( 55) CACCCGAA 1 chr2L:10964118-10964238 ( 102) GAACCGAG 1 chr2R:10234764-10234884 ( 50) AACACGAA 1 chr2L:8325224-8325344 ( 69) AACACGAA 1 chr3L:13440850-13440970 ( 16) AACACGAA 1 chr2R:16333981-16334101 ( 79) AACACGAA 1 chrX:19844406-19844526 ( 20) AATCCGAA 1 chr3R:12595696-12595816 ( 21) CAGACGAA 1 chr3R:5959530-5959650 ( 7) GACACGAA 1 chrX:1507879-1507999 ( 38) GACACGAA 1 chrX:13444845-13444965 ( 35) CAAACGAA 1 chr2R:23818941-23819061 ( 46) GACCCGAG 1 chr2R:16259829-16259949 ( 71) CAGCCGAG 1 chr3R:18950164-18950284 ( 20) CAGCCGAG 1 chrX:15973300-15973420 ( 43) CAGCCGAG 1 chr2L:5823940-5824060 ( 89) CAAACGAA 1 chr3R:31739502-31739622 ( 49) CAGCCGAG 1 chr2L:13461606-13461726 ( 92) AAGACGAG 1 chr2L:20484255-20484375 ( 54) GAGACGAG 1 chrX:9902551-9902671 ( 23) CACACGAA 1 chr3R:26390153-26390273 ( 78) CACACGAA 1 chr3L:1022927-1023047 ( 19) CACACGAA 1 chr3R:31048783-31048903 ( 34) CACACGAA 1 chr3R:17918029-17918149 ( 85) CACACGAA 1 chr3R:14405439-14405559 ( 90) GAAACGAG 1 chr3L:2282751-2282871 ( 42) AAGCCGAC 1 chr2L:8506868-8506988 ( 49) CACCCGAG 1 chr2R:23443995-23444115 ( 97) AAGCCGAC 1 chr2L:13246000-13246120 ( 88) AAACCGAC 1 chrX:1410434-1410554 ( 55) AAACCGAC 1 chr3R:16477155-16477275 ( 29) GAGCCGAC 1 chr2L:9743959-9744079 ( 87) AAACCGAC 1 chr2L:2109885-2110005 ( 92) AAACCGAC 1 chr2L:18275803-18275923 ( 55) GAACCGAC 1 chr3L:5423976-5424096 ( 39) AATACGAA 1 chr2R:14187215-14187335 ( 41) GATACGAA 1 chr3L:18945967-18946087 ( 103) AATCCGAG 1 chr2L:2011569-2011689 ( 47) GACACGAG 1 chr2R:14289395-14289515 ( 30) GATACGAA 1 chr3L:9182192-9182312 ( 71) GACACGAG 1 chr2R:18007841-18007961 ( 62) GACACGAG 1 chr2L:12539978-12540098 ( 74) GATCCGAG 1 chr3L:8745314-8745434 ( 107) GATCCGAG 1 chr2L:14972316-14972436 ( 103) GATCCGAG 1 chr3L:22638021-22638141 ( 12) CAGCCGAC 1 chr3R:29660065-29660185 ( 59) CACACGAG 1 chr3R:29068124-29068244 ( 52) GAAACGAC 1 chr2L:9729829-9729949 ( 71) AATACGAG 1 chr2R:8537084-8537204 ( 16) CACCCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.84894 E= 7.5e-039 75 -22 50 -1356 212 -1356 -1356 -1356 41 -27 56 -164 29 142 -1356 -1356 -1356 189 -1356 -1356 -1356 -1356 190 -1356 212 -1356 -1356 -1356 147 -157 2 -1356 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 7.5e-039 0.388430 0.231405 0.380165 0.000000 1.000000 0.000000 0.000000 0.000000 0.305785 0.223140 0.396694 0.074380 0.280992 0.719008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.090909 0.272727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAVCCGAA MEME-2 regular expression -------------------------------------------------------------------------------- [AGC]A[GAC][CA]CGA[AG] -------------------------------------------------------------------------------- Time 13.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTTTTSS MEME-3 width = 8 sites = 47 llr = 384 E-value = 6.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::::2 pos.-specific C 17::::75 probability G 9:::::33 matrix T :2aaaa:: bits 2.1 **** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 * **** Entropy 1.1 * ***** (11.8 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTTTTCC consensus T GG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20484553-20484673 57 1.51e-05 AAAGCGCGCC GCTTTTCC ATTTTCCGTT chr2R:10234764-10234884 95 1.51e-05 TTGTTGCGCA GCTTTTCC ACCCCTAAAA chr3R:31825717-31825837 24 1.51e-05 TGTGTGTGCT GCTTTTCC TGTTTGTGAA chrX:21507540-21507660 36 1.51e-05 AGACATGCCC GCTTTTCC GACTTTTCCG chrX:11293706-11293826 92 1.51e-05 CGATTTTCCC GCTTTTCC GACCATCTCG chrX:5446543-5446663 25 1.51e-05 TTTTCCCGAC GCTTTTCC GAACGCCAAC chr2R:18007841-18007961 3 1.51e-05 CT GCTTTTCC TTCTGCCGCT chr3L:15065045-15065165 42 1.51e-05 GGAAAGCTCT GCTTTTCC GGCCGTAAAC chr2L:10964118-10964238 52 1.51e-05 CGAGGCCGGA GCTTTTCC GTATTGTTGT chr2L:19605506-19605626 53 3.01e-05 TCAATGGCGG GCTTTTCG TGGACGCGAT chr2L:2311588-2311708 51 3.01e-05 TGCGGACTCG GCTTTTCG GGAACGATGG chr2L:1043270-1043390 83 4.51e-05 GCTCGATGGA GCTTTTGC TGTTGCTTCG chrX:11729166-11729286 25 4.51e-05 TCGCCTTCGT GCTTTTGC AGTTCCTGCT chr3L:5423976-5424096 88 4.51e-05 CTTTTTTCCT GCTTTTGC CAATGAAGCG chr2L:5823940-5824060 51 4.51e-05 GTGTTGGCCC GCTTTTGC GAAACGAGCC chr2R:23818941-23819061 80 5.80e-05 AATTGACAAA GCTTTTCA TTCATAACCT chr2R:16259829-16259949 92 5.80e-05 GCGTCCGTCT GCTTTTCA TTCATGAGTA chr3R:18950164-18950284 77 5.80e-05 CTCGCAACGC GCTTTTCA GCCAGCTCAA chrX:18186083-18186203 67 5.80e-05 CCGAACCGAA GCTTTTCA GTTGATTTTC chr2L:9886239-9886359 22 5.80e-05 GCTCAACGCA GCTTTTCA CACGGCCATG chr2R:13106257-13106377 37 8.58e-05 GCCTTTTCTG GCTTTTGG CCCATGTTGA chr2L:7674651-7674771 59 8.58e-05 GGTGCTCGGT GCTTTTGG ACTTCGGTAT chr3L:3826194-3826314 35 8.58e-05 AGTCGCACAC GTTTTTCC cacacacaca chr2L:13246000-13246120 40 9.86e-05 TCAGAGATGA GCTTTTGA GTTCGGCTTT chr3L:2488725-2488845 2 9.86e-05 G GCTTTTGA AGAatccgat chr3L:4046454-4046574 78 9.86e-05 TTTGGCGCTC GCTTTTGA ACCGAAGCGG chrX:14853314-14853434 92 1.11e-04 TAGTTTTCGG GTTTTTCG GTTTCTTCGG chr3R:10584946-10585066 81 1.11e-04 ggttcgttgt gtttttcg gttcggattg chrX:7629593-7629713 36 1.11e-04 CGTACACttc gtttttcg gttcgtgttc chr2R:14289395-14289515 72 1.11e-04 ATCTGGTCTC GTTTTTCG GAGTGTTTGC chrX:16063683-16063803 44 1.24e-04 GGAGTCCAAA GTTTTTGC CAACGACAGT chr2R:11172190-11172310 38 1.50e-04 TCCGACGGAC GTTTTTCA TTTGGCGCCA chr2L:9566802-9566922 25 1.50e-04 CATTTTCGGC CCTTTTCC ATTTCCCATT chr3R:29068124-29068244 95 1.63e-04 TCAGGAAATT GTTTTTGG GAGCACGTCG chr3R:13334110-13334230 57 1.63e-04 GACTGACTGG GTTTTTGG CCAAAATATC chr2R:20424179-20424299 45 1.63e-04 GGCCGGGAGC GTTTTTGG CGCTCGGCTT chr2R:24891414-24891534 91 1.91e-04 CCGCACGAGT CCTTTTCG AGAGAATAGG chr2L:19518733-19518853 74 1.91e-04 AAAAGCGACC GATTTTCC TACGGAATCA chr3R:17265037-17265157 70 1.91e-04 ACATGTCTGG GATTTTCC GGAATTCGCC chr3R:8768113-8768233 37 1.91e-04 CGTCCAGTGT CCTTTTCG ATCCGAACTC chr3R:25856045-25856165 17 1.91e-04 GATAGCCGGA GATTTTCC GAGCGAGGGA chr3R:28654771-28654891 101 2.17e-04 AGTTCAGTTG CCTTTTGC CACTCAGCGG chr3L:5476641-5476761 22 2.17e-04 AACTCTAGAG CCTTTTGC CTTCGGCCTA chr2L:8338178-8338298 66 2.17e-04 TAGTCGTCGT CCTTTTGC TGGCAATTGC chrX:1103985-1104105 10 2.30e-04 GGAATGCCT CCTTTTCA CCACCACACC chr3R:25665739-25665859 14 3.07e-04 CTGCTCGGCC GCTTTTCT TGTGCGGAGG chr3R:29377458-29377578 86 3.74e-04 ATTCTGGAGG GGTTTTCC GGGGGATGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20484553-20484673 1.5e-05 56_[+3]_56 chr2R:10234764-10234884 1.5e-05 94_[+3]_18 chr3R:31825717-31825837 1.5e-05 23_[+3]_89 chrX:21507540-21507660 1.5e-05 35_[+3]_77 chrX:11293706-11293826 1.5e-05 91_[+3]_21 chrX:5446543-5446663 1.5e-05 24_[+3]_88 chr2R:18007841-18007961 1.5e-05 2_[+3]_110 chr3L:15065045-15065165 1.5e-05 41_[+3]_71 chr2L:10964118-10964238 1.5e-05 51_[+3]_61 chr2L:19605506-19605626 3e-05 52_[+3]_60 chr2L:2311588-2311708 3e-05 50_[+3]_62 chr2L:1043270-1043390 4.5e-05 82_[+3]_30 chrX:11729166-11729286 4.5e-05 24_[+3]_88 chr3L:5423976-5424096 4.5e-05 87_[+3]_25 chr2L:5823940-5824060 4.5e-05 50_[+3]_62 chr2R:23818941-23819061 5.8e-05 79_[+3]_33 chr2R:16259829-16259949 5.8e-05 91_[+3]_21 chr3R:18950164-18950284 5.8e-05 76_[+3]_36 chrX:18186083-18186203 5.8e-05 66_[+3]_46 chr2L:9886239-9886359 5.8e-05 21_[+3]_91 chr2R:13106257-13106377 8.6e-05 36_[+3]_76 chr2L:7674651-7674771 8.6e-05 58_[+3]_54 chr3L:3826194-3826314 8.6e-05 34_[+3]_78 chr2L:13246000-13246120 9.9e-05 39_[+3]_73 chr3L:2488725-2488845 9.9e-05 1_[+3]_111 chr3L:4046454-4046574 9.9e-05 77_[+3]_35 chrX:14853314-14853434 0.00011 91_[+3]_21 chr3R:10584946-10585066 0.00011 80_[+3]_32 chrX:7629593-7629713 0.00011 35_[+3]_77 chr2R:14289395-14289515 0.00011 71_[+3]_41 chrX:16063683-16063803 0.00012 43_[+3]_69 chr2R:11172190-11172310 0.00015 37_[+3]_75 chr2L:9566802-9566922 0.00015 24_[+3]_88 chr3R:29068124-29068244 0.00016 94_[+3]_18 chr3R:13334110-13334230 0.00016 56_[+3]_56 chr2R:20424179-20424299 0.00016 44_[+3]_68 chr2R:24891414-24891534 0.00019 90_[+3]_22 chr2L:19518733-19518853 0.00019 73_[+3]_39 chr3R:17265037-17265157 0.00019 69_[+3]_43 chr3R:8768113-8768233 0.00019 36_[+3]_76 chr3R:25856045-25856165 0.00019 16_[+3]_96 chr3R:28654771-28654891 0.00022 100_[+3]_12 chr3L:5476641-5476761 0.00022 21_[+3]_91 chr2L:8338178-8338298 0.00022 65_[+3]_47 chrX:1103985-1104105 0.00023 9_[+3]_103 chr3R:25665739-25665859 0.00031 13_[+3]_99 chr3R:29377458-29377578 0.00037 85_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTTTTSS width=8 seqs=47 chr3R:20484553-20484673 ( 57) GCTTTTCC 1 chr2R:10234764-10234884 ( 95) GCTTTTCC 1 chr3R:31825717-31825837 ( 24) GCTTTTCC 1 chrX:21507540-21507660 ( 36) GCTTTTCC 1 chrX:11293706-11293826 ( 92) GCTTTTCC 1 chrX:5446543-5446663 ( 25) GCTTTTCC 1 chr2R:18007841-18007961 ( 3) GCTTTTCC 1 chr3L:15065045-15065165 ( 42) GCTTTTCC 1 chr2L:10964118-10964238 ( 52) GCTTTTCC 1 chr2L:19605506-19605626 ( 53) GCTTTTCG 1 chr2L:2311588-2311708 ( 51) GCTTTTCG 1 chr2L:1043270-1043390 ( 83) GCTTTTGC 1 chrX:11729166-11729286 ( 25) GCTTTTGC 1 chr3L:5423976-5424096 ( 88) GCTTTTGC 1 chr2L:5823940-5824060 ( 51) GCTTTTGC 1 chr2R:23818941-23819061 ( 80) GCTTTTCA 1 chr2R:16259829-16259949 ( 92) GCTTTTCA 1 chr3R:18950164-18950284 ( 77) GCTTTTCA 1 chrX:18186083-18186203 ( 67) GCTTTTCA 1 chr2L:9886239-9886359 ( 22) GCTTTTCA 1 chr2R:13106257-13106377 ( 37) GCTTTTGG 1 chr2L:7674651-7674771 ( 59) GCTTTTGG 1 chr3L:3826194-3826314 ( 35) GTTTTTCC 1 chr2L:13246000-13246120 ( 40) GCTTTTGA 1 chr3L:2488725-2488845 ( 2) GCTTTTGA 1 chr3L:4046454-4046574 ( 78) GCTTTTGA 1 chrX:14853314-14853434 ( 92) GTTTTTCG 1 chr3R:10584946-10585066 ( 81) GTTTTTCG 1 chrX:7629593-7629713 ( 36) GTTTTTCG 1 chr2R:14289395-14289515 ( 72) GTTTTTCG 1 chrX:16063683-16063803 ( 44) GTTTTTGC 1 chr2R:11172190-11172310 ( 38) GTTTTTCA 1 chr2L:9566802-9566922 ( 25) CCTTTTCC 1 chr3R:29068124-29068244 ( 95) GTTTTTGG 1 chr3R:13334110-13334230 ( 57) GTTTTTGG 1 chr2R:20424179-20424299 ( 45) GTTTTTGG 1 chr2R:24891414-24891534 ( 91) CCTTTTCG 1 chr2L:19518733-19518853 ( 74) GATTTTCC 1 chr3R:17265037-17265157 ( 70) GATTTTCC 1 chr3R:8768113-8768233 ( 37) CCTTTTCG 1 chr3R:25856045-25856165 ( 17) GATTTTCC 1 chr3R:28654771-28654891 ( 101) CCTTTTGC 1 chr3L:5476641-5476761 ( 22) CCTTTTGC 1 chr2L:8338178-8338298 ( 66) CCTTTTGC 1 chrX:1103985-1104105 ( 10) CCTTTTCA 1 chr3R:25665739-25665859 ( 14) GCTTTTCT 1 chr3R:29377458-29377578 ( 86) GGTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.65489 E= 6.8e-002 -1220 -86 166 -1220 -185 138 -366 -12 -1220 -1220 -1220 211 -1220 -1220 -1220 211 -1220 -1220 -1220 211 -1220 -1220 -1220 211 -1220 129 34 -1220 -12 86 4 -344 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 6.8e-002 0.000000 0.148936 0.851064 0.000000 0.063830 0.702128 0.021277 0.212766 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.659574 0.340426 0.000000 0.212766 0.489362 0.276596 0.021277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTSS MEME-3 regular expression -------------------------------------------------------------------------------- G[CT]TTTT[CG][CGA] -------------------------------------------------------------------------------- Time 19.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCDDTTK MEME-4 width = 8 sites = 61 llr = 463 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::32::: pos.-specific C ::8::::2 probability G :::43::4 matrix T aa234aa4 bits 2.1 ** ** 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 *** ** (10.9 bits) 0.8 *** ** 0.6 *** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCGTTTT consensus TAG G sequence TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7825978-7826098 54 9.44e-06 GCTCCGCTCG TTCATTTT CGTCCTGCCA chr2R:24075995-24076115 38 2.05e-05 ATTTCCCCAA TTCGTTTT TTGTTCGGGC chr2L:2903760-2903880 61 2.05e-05 GTCttttgtt ttcgtttt cgccgcttct chr3L:3826194-3826314 90 2.05e-05 TTTTCTCGGG TTCGTTTT TCATTTCGTA chr2R:8537084-8537204 8 2.05e-05 CTTGACT TTCGTTTT CACCCGACTC chrX:7629593-7629713 51 2.05e-05 tcggttcgtg ttcgtttt cctgtCGATG chr3R:28990862-28990982 55 2.05e-05 CTTTCGTCCC TTCGTTTT ACTTCGTTTA chrX:16063683-16063803 14 5.19e-05 TGTTCGGCTT TTCATTTG AACGCTTGGA chr3L:8582281-8582401 105 5.19e-05 TTATTTTTAT TTCAGTTT GGAACTAA chr2L:8338178-8338298 106 5.19e-05 GGCCAGCAAT TTCAGTTT GCCTTTG chr2L:10964118-10964238 21 5.19e-05 CGACTTGAAA TTCATTTG ATACTGCGGC chr2R:16279885-16280005 28 7.76e-05 TCGGCTCCCA TTCGGTTT TGTGGGGAAA chr3R:5802176-5802296 94 7.76e-05 CCAGCCGGAG TTCGTTTG TGGCTCGGAT chrX:14853314-14853434 7 8.70e-05 GCCAAG TTCAATTT AATATTAAAT chr2L:7363234-7363354 99 8.70e-05 TTTCAAATAT TTCAATTT TAATTTGCAT chr2R:18008692-18008812 101 8.70e-05 AGCAAACCGC TTCAATTT GGGTTATTGT chr2L:13461606-13461726 27 8.70e-05 GCCAGGCGCT TTCAATTT CGTTCAACCT chr2L:13246000-13246120 7 1.33e-04 TATTGG TTCTTTTG AATAAGCTTT chr3L:8419918-8420038 35 1.33e-04 GGCCCCCGGC TTCTGTTT GGCCCCTTCG chr2L:13717271-13717391 14 1.33e-04 AGTCCGTCCG TTCAGTTG AAAGCCCGAT chr3L:16394606-16394726 18 1.33e-04 gctcattcag ttcagttg tgctcagctc chrX:6908201-6908321 102 1.33e-04 AGACGGCAAC TTCAGTTG CAAGCGAGCG chr3L:2282751-2282871 113 1.33e-04 TTCGCAGTTT TTCAGTTG chr3R:25665739-25665859 67 1.33e-04 TGCCACCAGC TTCAGTTG GCCGCTGTGC chr3L:2503630-2503750 48 1.33e-04 CAGGAAAAga ttctgttt ctgactttga chr3R:28654771-28654891 93 1.33e-04 ACAACGACAG TTCAGTTG CCTTTTGCCA chr2R:14276036-14276156 36 1.33e-04 CCGTTTCTGC TTCTGTTT CTGTTACCAC chr3R:23557356-23557476 53 1.33e-04 GCCGTGGCGA TTCAGTTG AATTCGTTAC chr2R:14289395-14289515 97 1.33e-04 TGCCGGCGAT TTCGATTT CCAGGCGGTT chrX:3574410-3574530 111 1.33e-04 TTGCGACTGT TTCGATTT GG chr3L:13440850-13440970 59 1.33e-04 GGCACATCGT TTCAGTTG AAATTTGGGC chr3R:12783291-12783411 77 1.33e-04 TGAGCATGTC TTCTTTTG CCGAAGAAGA chrX:13604719-13604839 12 1.68e-04 ATTTTTGTTG TTCTATTT TTGGACGTTT chr2L:9729829-9729949 50 2.05e-04 ATCTTGGCAG TTCGATTG CGGTCGGTGC chr2R:23443995-23444115 62 2.26e-04 GGATTTACCG TTCGTTTC GGGGCGTGGT chr3L:5273376-5273496 40 2.26e-04 GCCTGGCAGA TTCGTTTC GGCTTTCCAG chr3R:31739502-31739622 94 2.26e-04 TTCGGCTCCA TTCGTTTC TGTCTGGGGC chr2L:13803917-13804037 79 2.46e-04 TGTTTGTTTG TTTGTTTT CGCTGTGGAC chrX:15973300-15973420 74 2.46e-04 CGCTCTCCGC TTCTATTG TCACGTCACA chrX:5446543-5446663 105 2.46e-04 AAGAAATTTG TTTGTTTT GATTCAGT chrX:18009542-18009662 110 2.46e-04 attttcgtag tTTGTTTT GCT chr3R:17265037-17265157 25 2.70e-04 GCTTTGTTGG TTCTTTTC AACTGGCAAA chrX:15385282-15385402 17 3.12e-04 ATGTGAACTA TTTATTTG TGCCACTCGG chr3R:10971100-10971220 107 3.12e-04 TGTAGTAGAG TTTTTTTT GTAAGC chrX:7759990-7760110 10 3.12e-04 GTCGCATAG TTTTTTTT AAGCATTTTT chr3R:13539009-13539129 57 3.12e-04 tatatgtata tttatttg tatGTGTCGA chr3L:8745314-8745434 48 3.12e-04 CAACGATTTA TTCGGTTC CCTTCGGGAG chr3R:4280177-4280297 4 3.45e-04 CGT TTTGTTTG GGGCCAACTG chr2L:2006221-2006341 32 3.79e-04 AAGCGAGTCC TTCGATTC CTGCAGGCGC chr2L:12539978-12540098 25 3.79e-04 TAGGGTTCCG TTCTGTtc cgatccgatc chrX:2580430-2580550 103 3.79e-04 GGGCTCGGGA TTCGATTC GTGCCCATCA chr3L:5351487-5351607 10 3.79e-04 TCGCCCAGT TTCTGTTC GGATCGTGCG chr2L:16000338-16000458 77 3.79e-04 GCCGAATTCC TTCGATTC CAGCTTCTAC chr3L:6704724-6704844 23 4.42e-04 ACTGTCTATT TTTGGTTG TTGCTCGCTC chr3R:29377458-29377578 72 4.42e-04 ACCACCGACC TTCTATTC TGGAGGGGTT chr3R:12728058-12728178 26 4.59e-04 atgtatgtat TTTAATTG AATGTAGAGT chr2R:24292509-24292629 30 4.91e-04 TCAAAGAAAC TTTTGTTG ACAACACAAA chr2L:13260923-13261043 23 4.91e-04 CGAAGGAGCA TTTATTTC GAAATGTGAA chr3R:24663183-24663303 51 4.91e-04 TCAATGTTAT TTTTGTTG CTTCCTACTC chr3R:23699002-23699122 48 5.11e-04 TGCCTTTCCA TTTTATTG ACACCAGACG chr2L:19605506-19605626 70 6.09e-04 GTGGACGCGA TTCGCTTT TCACCTTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7825978-7826098 9.4e-06 53_[+4]_59 chr2R:24075995-24076115 2e-05 37_[+4]_75 chr2L:2903760-2903880 2e-05 60_[+4]_52 chr3L:3826194-3826314 2e-05 89_[+4]_23 chr2R:8537084-8537204 2e-05 7_[+4]_105 chrX:7629593-7629713 2e-05 50_[+4]_62 chr3R:28990862-28990982 2e-05 54_[+4]_58 chrX:16063683-16063803 5.2e-05 13_[+4]_99 chr3L:8582281-8582401 5.2e-05 104_[+4]_8 chr2L:8338178-8338298 5.2e-05 105_[+4]_7 chr2L:10964118-10964238 5.2e-05 20_[+4]_92 chr2R:16279885-16280005 7.8e-05 27_[+4]_85 chr3R:5802176-5802296 7.8e-05 93_[+4]_19 chrX:14853314-14853434 8.7e-05 6_[+4]_106 chr2L:7363234-7363354 8.7e-05 98_[+4]_14 chr2R:18008692-18008812 8.7e-05 100_[+4]_12 chr2L:13461606-13461726 8.7e-05 26_[+4]_86 chr2L:13246000-13246120 0.00013 6_[+4]_106 chr3L:8419918-8420038 0.00013 34_[+4]_78 chr2L:13717271-13717391 0.00013 13_[+4]_99 chr3L:16394606-16394726 0.00013 17_[+4]_95 chrX:6908201-6908321 0.00013 101_[+4]_11 chr3L:2282751-2282871 0.00013 112_[+4] chr3R:25665739-25665859 0.00013 66_[+4]_46 chr3L:2503630-2503750 0.00013 47_[+4]_65 chr3R:28654771-28654891 0.00013 92_[+4]_20 chr2R:14276036-14276156 0.00013 35_[+4]_77 chr3R:23557356-23557476 0.00013 52_[+4]_60 chr2R:14289395-14289515 0.00013 96_[+4]_16 chrX:3574410-3574530 0.00013 110_[+4]_2 chr3L:13440850-13440970 0.00013 58_[+4]_54 chr3R:12783291-12783411 0.00013 76_[+4]_36 chrX:13604719-13604839 0.00017 11_[+4]_101 chr2L:9729829-9729949 0.0002 49_[+4]_63 chr2R:23443995-23444115 0.00023 61_[+4]_51 chr3L:5273376-5273496 0.00023 39_[+4]_73 chr3R:31739502-31739622 0.00023 93_[+4]_19 chr2L:13803917-13804037 0.00025 78_[+4]_34 chrX:15973300-15973420 0.00025 73_[+4]_39 chrX:5446543-5446663 0.00025 104_[+4]_8 chrX:18009542-18009662 0.00025 109_[+4]_3 chr3R:17265037-17265157 0.00027 24_[+4]_88 chrX:15385282-15385402 0.00031 16_[+4]_96 chr3R:10971100-10971220 0.00031 106_[+4]_6 chrX:7759990-7760110 0.00031 9_[+4]_103 chr3R:13539009-13539129 0.00031 56_[+4]_56 chr3L:8745314-8745434 0.00031 47_[+4]_65 chr3R:4280177-4280297 0.00035 3_[+4]_109 chr2L:2006221-2006341 0.00038 31_[+4]_81 chr2L:12539978-12540098 0.00038 24_[+4]_88 chrX:2580430-2580550 0.00038 102_[+4]_10 chr3L:5351487-5351607 0.00038 9_[+4]_103 chr2L:16000338-16000458 0.00038 76_[+4]_36 chr3L:6704724-6704844 0.00044 22_[+4]_90 chr3R:29377458-29377578 0.00044 71_[+4]_41 chr3R:12728058-12728178 0.00046 25_[+4]_87 chr2R:24292509-24292629 0.00049 29_[+4]_83 chr2L:13260923-13261043 0.00049 22_[+4]_90 chr3R:24663183-24663303 0.00049 50_[+4]_62 chr3R:23699002-23699122 0.00051 47_[+4]_65 chr2L:19605506-19605626 0.00061 69_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCDDTTK width=8 seqs=61 chrX:7825978-7826098 ( 54) TTCATTTT 1 chr2R:24075995-24076115 ( 38) TTCGTTTT 1 chr2L:2903760-2903880 ( 61) TTCGTTTT 1 chr3L:3826194-3826314 ( 90) TTCGTTTT 1 chr2R:8537084-8537204 ( 8) TTCGTTTT 1 chrX:7629593-7629713 ( 51) TTCGTTTT 1 chr3R:28990862-28990982 ( 55) TTCGTTTT 1 chrX:16063683-16063803 ( 14) TTCATTTG 1 chr3L:8582281-8582401 ( 105) TTCAGTTT 1 chr2L:8338178-8338298 ( 106) TTCAGTTT 1 chr2L:10964118-10964238 ( 21) TTCATTTG 1 chr2R:16279885-16280005 ( 28) TTCGGTTT 1 chr3R:5802176-5802296 ( 94) TTCGTTTG 1 chrX:14853314-14853434 ( 7) TTCAATTT 1 chr2L:7363234-7363354 ( 99) TTCAATTT 1 chr2R:18008692-18008812 ( 101) TTCAATTT 1 chr2L:13461606-13461726 ( 27) TTCAATTT 1 chr2L:13246000-13246120 ( 7) TTCTTTTG 1 chr3L:8419918-8420038 ( 35) TTCTGTTT 1 chr2L:13717271-13717391 ( 14) TTCAGTTG 1 chr3L:16394606-16394726 ( 18) TTCAGTTG 1 chrX:6908201-6908321 ( 102) TTCAGTTG 1 chr3L:2282751-2282871 ( 113) TTCAGTTG 1 chr3R:25665739-25665859 ( 67) TTCAGTTG 1 chr3L:2503630-2503750 ( 48) TTCTGTTT 1 chr3R:28654771-28654891 ( 93) TTCAGTTG 1 chr2R:14276036-14276156 ( 36) TTCTGTTT 1 chr3R:23557356-23557476 ( 53) TTCAGTTG 1 chr2R:14289395-14289515 ( 97) TTCGATTT 1 chrX:3574410-3574530 ( 111) TTCGATTT 1 chr3L:13440850-13440970 ( 59) TTCAGTTG 1 chr3R:12783291-12783411 ( 77) TTCTTTTG 1 chrX:13604719-13604839 ( 12) TTCTATTT 1 chr2L:9729829-9729949 ( 50) TTCGATTG 1 chr2R:23443995-23444115 ( 62) TTCGTTTC 1 chr3L:5273376-5273496 ( 40) TTCGTTTC 1 chr3R:31739502-31739622 ( 94) TTCGTTTC 1 chr2L:13803917-13804037 ( 79) TTTGTTTT 1 chrX:15973300-15973420 ( 74) TTCTATTG 1 chrX:5446543-5446663 ( 105) TTTGTTTT 1 chrX:18009542-18009662 ( 110) TTTGTTTT 1 chr3R:17265037-17265157 ( 25) TTCTTTTC 1 chrX:15385282-15385402 ( 17) TTTATTTG 1 chr3R:10971100-10971220 ( 107) TTTTTTTT 1 chrX:7759990-7760110 ( 10) TTTTTTTT 1 chr3R:13539009-13539129 ( 57) TTTATTTG 1 chr3L:8745314-8745434 ( 48) TTCGGTTC 1 chr3R:4280177-4280297 ( 4) TTTGTTTG 1 chr2L:2006221-2006341 ( 32) TTCGATTC 1 chr2L:12539978-12540098 ( 25) TTCTGTTC 1 chrX:2580430-2580550 ( 103) TTCGATTC 1 chr3L:5351487-5351607 ( 10) TTCTGTTC 1 chr2L:16000338-16000458 ( 77) TTCGATTC 1 chr3L:6704724-6704844 ( 23) TTTGGTTG 1 chr3R:29377458-29377578 ( 72) TTCTATTC 1 chr3R:12728058-12728178 ( 26) TTTAATTG 1 chr2R:24292509-24292629 ( 30) TTTTGTTG 1 chr2L:13260923-13261043 ( 23) TTTATTTC 1 chr3R:24663183-24663303 ( 51) TTTTGTTG 1 chr3R:23699002-23699122 ( 48) TTTTATTG 1 chr2L:19605506-19605626 ( 70) TTCGCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 5.0e+002 -1257 -1257 -1257 211 -1257 -1257 -1257 211 -1257 151 -1257 -1 58 -1257 55 18 9 -404 29 83 -1257 -1257 -1257 211 -1257 -1257 -1257 211 -1257 -45 49 88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 5.0e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.770492 0.000000 0.229508 0.344262 0.000000 0.393443 0.262295 0.245902 0.016393 0.327869 0.409836 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.196721 0.377049 0.426230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCDDTTK MEME-4 regular expression -------------------------------------------------------------------------------- TT[CT][GAT][TGA]TT[TG] -------------------------------------------------------------------------------- Time 24.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AAASARAA MEME-5 width = 8 sites = 33 llr = 281 E-value = 5.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa9176a8 pos.-specific C ::16:::: probability G :::334:: matrix T :::::::2 bits 2.1 ** * 1.9 ** * 1.7 ** * 1.5 *** * Relative 1.3 *** * ** Entropy 1.1 *** **** (12.3 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus GGG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12895631-12895751 5 9.19e-06 AGCC AAACAAAA cgaaccgaac chr3L:1842092-1842212 91 9.19e-06 GCAGGGGCAA AAACAAAA CTACAATGAA chr3R:25665739-25665859 35 9.19e-06 GCGGAGGGAA AAACAAAA TCAGCAACAC chrX:2950588-2950708 71 1.84e-05 AAAAAAAAAA AAAGAAAA CCCAAGGCTT chrX:7759990-7760110 46 1.84e-05 GCTTTACTCG AAAGAAAA ACGCAACCGG chrX:5165063-5165183 43 1.84e-05 TGTTTGCAAA AAAGAAAA TGGAACAGAA chr2R:10381729-10381849 51 1.84e-05 GGAAAACTCT AAAGAAAA CTCTGGCTTC chr2L:19755205-19755325 1 2.91e-05 . AAACAGAA CCAAATTGTA chr2R:16259829-16259949 1 2.91e-05 . aaacagaa gcacaaccag chr2L:20484255-20484375 105 2.91e-05 CAAGATTGag aaacagaa gcagaaat chr3R:17762419-17762539 65 2.91e-05 GGAAAACTGA AAACAGAA CTGAACTGAA chrX:10158314-10158434 21 2.91e-05 CCATTCACCA AAACAGAA GTTCGGCTCC chr3R:10601339-10601459 78 3.99e-05 ACCGAAATAA AAACGAAA TGCAAGCGAC chrX:15385282-15385402 1 5.98e-05 . AAACAAAT GTGAACTATT chr2R:24292509-24292629 45 5.98e-05 TTGACAACAC AAACAAAT GCCAAATGCA chr3R:23557356-23557476 22 5.98e-05 GACGATTCAT AAACAAAT CGAGCTGTTC chr2L:17102445-17102565 32 7.05e-05 AATCGAGACT AAAGGAAA GTCGAAGTTT chr2L:15962438-15962558 34 7.05e-05 ATCGCCCCAG AAAGGAAA TACCTTCGTG chrX:19844406-19844526 32 9.23e-05 tccgaatccg aaacggaa tcggaatcca chr2R:10350010-10350130 106 9.23e-05 TCGGAAAGCG AAACGGAA ATGCGGG chr2R:24727509-24727629 83 9.23e-05 acGGGCATGC AAAGAAAT TTATATAATT chrX:11695977-11696097 2 9.23e-05 g aaacggaa cgaagcgaag chrX:5446543-5446663 94 9.23e-05 GAATAAAACT AAAGAAAT TTGTTTGTTT chr2L:9886239-9886359 80 9.23e-05 ACTCAATCCG AAACGGAA AACGAAAAAC chr3R:5404134-5404254 109 1.03e-04 GAAAGCCGTA AAACAGAT CATG chr2L:2109885-2110005 79 1.11e-04 GAGGCACGTA AAAAAAAA GTTCAAAACC chr3L:17002631-17002751 65 1.22e-04 TGCGCACcca aaccaaaa cgaacataac chr3R:26390153-26390273 62 1.22e-04 TGACACAGAA AACCAAAA GCAGCCGACA chr3R:5802176-5802296 45 1.22e-04 AGccgaaccg aaccaaaa cgaaccgaac chrX:15443676-15443796 18 1.45e-04 GTCAAGTAGT AAAGGGAA AGCCCCTCCC chr3R:26195207-26195327 86 1.45e-04 GGGGTGGCCA AAAGGGAA ACCAGACGTG chr2L:21198772-21198892 42 1.76e-04 ACAAAATCGT AACGAAAA CTTGACTAAC chrX:16005230-16005350 55 2.41e-04 AGCCGAACAC AAAAAAAT TCATTCGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12895631-12895751 9.2e-06 4_[+5]_108 chr3L:1842092-1842212 9.2e-06 90_[+5]_22 chr3R:25665739-25665859 9.2e-06 34_[+5]_78 chrX:2950588-2950708 1.8e-05 70_[+5]_42 chrX:7759990-7760110 1.8e-05 45_[+5]_67 chrX:5165063-5165183 1.8e-05 42_[+5]_70 chr2R:10381729-10381849 1.8e-05 50_[+5]_62 chr2L:19755205-19755325 2.9e-05 [+5]_112 chr2R:16259829-16259949 2.9e-05 [+5]_112 chr2L:20484255-20484375 2.9e-05 104_[+5]_8 chr3R:17762419-17762539 2.9e-05 64_[+5]_48 chrX:10158314-10158434 2.9e-05 20_[+5]_92 chr3R:10601339-10601459 4e-05 77_[+5]_35 chrX:15385282-15385402 6e-05 [+5]_112 chr2R:24292509-24292629 6e-05 44_[+5]_68 chr3R:23557356-23557476 6e-05 21_[+5]_91 chr2L:17102445-17102565 7.1e-05 31_[+5]_81 chr2L:15962438-15962558 7.1e-05 33_[+5]_79 chrX:19844406-19844526 9.2e-05 31_[+5]_81 chr2R:10350010-10350130 9.2e-05 105_[+5]_7 chr2R:24727509-24727629 9.2e-05 82_[+5]_30 chrX:11695977-11696097 9.2e-05 1_[+5]_111 chrX:5446543-5446663 9.2e-05 93_[+5]_19 chr2L:9886239-9886359 9.2e-05 79_[+5]_33 chr3R:5404134-5404254 0.0001 108_[+5]_4 chr2L:2109885-2110005 0.00011 78_[+5]_34 chr3L:17002631-17002751 0.00012 64_[+5]_48 chr3R:26390153-26390273 0.00012 61_[+5]_51 chr3R:5802176-5802296 0.00012 44_[+5]_68 chrX:15443676-15443796 0.00015 17_[+5]_95 chr3R:26195207-26195327 0.00015 85_[+5]_27 chr2L:21198772-21198892 0.00018 41_[+5]_71 chrX:16005230-16005350 0.00024 54_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAASARAA width=8 seqs=33 chr2R:12895631-12895751 ( 5) AAACAAAA 1 chr3L:1842092-1842212 ( 91) AAACAAAA 1 chr3R:25665739-25665859 ( 35) AAACAAAA 1 chrX:2950588-2950708 ( 71) AAAGAAAA 1 chrX:7759990-7760110 ( 46) AAAGAAAA 1 chrX:5165063-5165183 ( 43) AAAGAAAA 1 chr2R:10381729-10381849 ( 51) AAAGAAAA 1 chr2L:19755205-19755325 ( 1) AAACAGAA 1 chr2R:16259829-16259949 ( 1) AAACAGAA 1 chr2L:20484255-20484375 ( 105) AAACAGAA 1 chr3R:17762419-17762539 ( 65) AAACAGAA 1 chrX:10158314-10158434 ( 21) AAACAGAA 1 chr3R:10601339-10601459 ( 78) AAACGAAA 1 chrX:15385282-15385402 ( 1) AAACAAAT 1 chr2R:24292509-24292629 ( 45) AAACAAAT 1 chr3R:23557356-23557476 ( 22) AAACAAAT 1 chr2L:17102445-17102565 ( 32) AAAGGAAA 1 chr2L:15962438-15962558 ( 34) AAAGGAAA 1 chrX:19844406-19844526 ( 32) AAACGGAA 1 chr2R:10350010-10350130 ( 106) AAACGGAA 1 chr2R:24727509-24727629 ( 83) AAAGAAAT 1 chrX:11695977-11696097 ( 2) AAACGGAA 1 chrX:5446543-5446663 ( 94) AAAGAAAT 1 chr2L:9886239-9886359 ( 80) AAACGGAA 1 chr3R:5404134-5404254 ( 109) AAACAGAT 1 chr2L:2109885-2110005 ( 79) AAAAAAAA 1 chr3L:17002631-17002751 ( 65) AACCAAAA 1 chr3R:26390153-26390273 ( 62) AACCAAAA 1 chr3R:5802176-5802296 ( 45) AACCAAAA 1 chrX:15443676-15443796 ( 18) AAAGGGAA 1 chr3R:26195207-26195327 ( 86) AAAGGGAA 1 chr2L:21198772-21198892 ( 42) AACGAAAA 1 chrX:16005230-16005350 ( 55) AAAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 5.7e+003 212 -1169 -1169 -1169 212 -1169 -1169 -1169 193 -115 -1169 -1169 -193 117 31 -1169 166 -1169 2 -1169 147 -1169 44 -1169 212 -1169 -1169 -1169 177 -1169 -1169 -12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 5.7e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.878788 0.121212 0.000000 0.000000 0.060606 0.606061 0.333333 0.000000 0.727273 0.000000 0.272727 0.000000 0.636364 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.000000 0.787879 0.000000 0.000000 0.212121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASARAA MEME-5 regular expression -------------------------------------------------------------------------------- AAA[CG][AG][AG]A[AT] -------------------------------------------------------------------------------- Time 30.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14972316-14972436 2.58e-01 120 chr3R:5802176-5802296 6.42e-05 38_[+2(5.94e-05)]_7_[+2(5.94e-05)]_\ 2_[+2(5.94e-05)]_22_[+4(7.76e-05)]_19 chr3L:8745314-8745434 2.71e-02 120 chr2R:16333981-16334101 4.85e-02 120 chrX:1507879-1507999 9.43e-02 120 chr3R:12848462-12848582 8.71e-01 120 chr2L:16000338-16000458 1.96e-02 120 chr3R:5959530-5959650 4.06e-02 120 chr2R:10381729-10381849 5.33e-03 50_[+5(1.84e-05)]_62 chr2L:9566802-9566922 4.26e-03 75_[+1(3.50e-05)]_37 chrX:16533177-16533297 4.40e-01 120 chr2L:2109885-2110005 1.17e-01 120 chr3R:11335958-11336078 1.81e-01 120 chrX:294957-295077 3.73e-01 120 chr3R:14405439-14405559 6.65e-03 120 chr2R:12494859-12494979 1.40e-04 60_[+2(1.48e-05)]_52 chr3R:25856045-25856165 1.06e-03 34_[+2(4.46e-05)]_78 chr2L:10964118-10964238 2.48e-04 20_[+4(5.19e-05)]_23_[+3(1.51e-05)]_\ 61 chrX:8501513-8501633 7.75e-03 90_[+1(1.76e-05)]_22 chr3R:8768113-8768233 3.44e-02 120 chr2L:9415192-9415312 1.56e-01 70_[+1(5.56e-05)]_42 chr2R:16279885-16280005 5.79e-05 15_[+1(7.60e-05)]_4_[+4(7.76e-05)]_\ 85 chr3R:22497164-22497284 3.13e-01 120 chrX:19348371-19348491 2.40e-01 120 chr3L:5351487-5351607 5.21e-04 75_[+3(3.01e-05)]_37 chr2L:8338178-8338298 2.16e-03 105_[+4(5.19e-05)]_7 chr2L:13461606-13461726 3.98e-03 26_[+4(8.70e-05)]_86 chr2L:9886239-9886359 1.00e-03 21_[+3(5.80e-05)]_57_[+5(3.99e-05)]_\ 26 chr3R:31739502-31739622 4.09e-04 30_[+1(1.76e-05)]_44_[+1(1.76e-05)]_\ 30 chrX:5165063-5165183 7.75e-02 42_[+5(1.84e-05)]_70 chr3L:17633308-17633428 4.44e-01 120 chrX:10158314-10158434 7.44e-04 20_[+5(2.91e-05)]_[+1(3.50e-05)]_84 chr3R:12783291-12783411 5.62e-02 120 chr3R:12915950-12916070 1.86e-01 120 chr3L:5273376-5273496 2.45e-03 58_[+4(7.76e-05)]_54 chrX:2888332-2888452 2.41e-01 120 chr2L:22142835-22142955 1.39e-01 120 chr3R:15875706-15875826 3.71e-02 38_[+2(4.46e-05)]_74 chrX:18186083-18186203 7.66e-05 58_[+2(5.94e-05)]_[+3(5.80e-05)]_46 chrX:12868744-12868864 4.45e-02 95_[+2(1.48e-05)]_17 chr2L:2311588-2311708 1.10e-02 50_[+3(3.01e-05)]_62 chrX:17444019-17444139 1.24e-01 120 chrX:2554001-2554121 4.53e-04 35_[+3(1.51e-05)]_[+1(7.60e-05)]_6_\ [+3(1.51e-05)]_14_[+1(7.60e-05)]_33 chr3R:8059112-8059232 3.01e-02 20_[+2(7.42e-05)]_6_[+2(1.48e-05)]_\ 78 chrX:14591650-14591770 2.33e-01 120 chr2L:15552624-15552744 6.96e-02 14_[+1(1.76e-05)]_98 chr2R:18008692-18008812 2.03e-03 100_[+4(8.70e-05)]_12 chr2R:10087443-10087563 3.33e-01 120 chr3R:28047396-28047516 3.36e-02 120 chr2R:9247229-9247349 1.17e-02 68_[+1(1.76e-05)]_7_[+1(3.50e-05)]_\ 29 chr3L:15065045-15065165 6.35e-05 41_[+3(1.51e-05)]_20_[+1(1.76e-05)]_\ 43 chrX:7825978-7826098 7.01e-04 38_[+1(7.60e-05)]_7_[+4(9.44e-06)]_\ 59 chr3R:28146535-28146655 9.85e-01 120 chr3L:13440850-13440970 3.00e-04 39_[+4(2.05e-05)]_73 chr2R:24390279-24390399 6.22e-01 120 chr3R:28970405-28970525 6.95e-02 120 chrX:12128155-12128275 2.32e-02 1_[+2(4.46e-05)]_111 chr3R:10972278-10972398 9.37e-02 29_[+2(1.48e-05)]_83 chr2L:15962438-15962558 5.73e-03 33_[+5(7.05e-05)]_79 chr2L:5100735-5100855 9.62e-02 120 chr3R:30560184-30560304 5.15e-01 120 chr3R:28418093-28418213 9.60e-05 10_[+1(7.60e-05)]_18_[+5(2.91e-05)]_\ 76 chr2R:18007841-18007961 1.51e-03 2_[+3(1.51e-05)]_110 chr3L:16257257-16257377 3.26e-01 42_[+1(7.60e-05)]_70 chr3R:17366162-17366282 1.47e-01 120 chr3L:4046454-4046574 1.77e-03 57_[+2(4.46e-05)]_18_[+2(5.94e-05)]_\ 29 chr2L:5823940-5824060 4.28e-04 50_[+3(4.51e-05)]_62 chr3R:17265037-17265157 4.89e-04 105_[+2(5.94e-05)]_7 chr3L:9182192-9182312 3.21e-03 102_[+1(7.60e-05)]_10 chrX:20062715-20062835 8.62e-01 120 chr3R:21294000-21294120 1.83e-03 50_[+2(4.46e-05)]_62 chrX:3574410-3574530 1.49e-03 58_[+1(1.76e-05)]_54 chr2R:20424179-20424299 3.09e-02 53_[+1(7.60e-05)]_59 chr3L:22571841-22571961 2.77e-04 45_[+1(7.60e-05)]_59_[+2(1.48e-05)] chrX:986020-986140 1.84e-03 76_[+1(5.56e-05)]_36 chr3L:5423976-5424096 3.88e-05 54_[+4(7.76e-05)]_25_[+3(4.51e-05)]_\ 25 chr3R:17918029-17918149 7.23e-03 20_[+1(1.76e-05)]_92 chr2R:23443995-23444115 1.53e-02 120 chrX:18009542-18009662 2.88e-02 120 chr3L:5476641-5476761 2.73e-04 106_[+2(4.46e-05)]_6 chr2R:20550102-20550222 8.53e-02 120 chr3R:30174589-30174709 4.20e-01 120 chr3R:17762419-17762539 6.34e-03 64_[+5(2.91e-05)]_48 chr2R:21126377-21126497 8.30e-01 120 chr3R:5771894-5772014 3.43e-02 120 chr2L:20484255-20484375 5.28e-02 104_[+5(2.91e-05)]_8 chr3R:28990862-28990982 5.60e-03 54_[+4(2.05e-05)]_58 chr2R:14289395-14289515 3.89e-03 120 chr3L:4557095-4557215 4.01e-01 120 chr3R:31048783-31048903 6.63e-02 120 chr2L:14040075-14040195 2.26e-01 120 chr3R:16604865-16604985 5.36e-01 120 chr2L:2011569-2011689 4.75e-04 74_[+4(7.76e-05)]_38 chr3R:23557356-23557476 1.10e-03 21_[+5(5.98e-05)]_91 chr2R:14276036-14276156 7.97e-03 14_[+1(7.60e-05)]_98 chr2L:21198772-21198892 2.41e-02 120 chr2L:9746491-9746611 1.81e-01 71_[+2(4.46e-05)]_41 chr3L:1022927-1023047 5.84e-01 120 chrX:7629593-7629713 5.60e-04 32_[+4(2.05e-05)]_10_[+4(2.05e-05)]_\ 47_[+4(5.19e-05)]_7 chr3R:12158590-12158710 3.28e-02 82_[+2(4.46e-05)]_30 chr2L:9743959-9744079 5.46e-02 120 chr2L:7363234-7363354 7.43e-02 98_[+4(8.70e-05)]_14 chr3R:16477155-16477275 7.59e-02 120 chr3R:30149586-30149706 3.96e-01 120 chr3R:10584946-10585066 1.99e-03 46_[+4(7.76e-05)]_66 chrX:20927346-20927466 1.90e-02 120 chrX:6993489-6993609 4.30e-02 120 chr2R:8537084-8537204 5.06e-04 7_[+4(2.05e-05)]_70_[+1(7.60e-05)]_\ 27 chr3R:5404134-5404254 3.22e-04 88_[+5(1.84e-05)]_24 chr2R:16109369-16109489 3.84e-02 120 chr3L:18945967-18946087 1.53e-02 120 chr3R:26390153-26390273 4.05e-02 120 chr2L:8325224-8325344 2.17e-01 120 chrX:1735222-1735342 6.52e-01 120 chr3L:22638021-22638141 3.73e-01 120 chrX:5446543-5446663 3.98e-04 12_[+3(8.58e-05)]_4_[+3(1.51e-05)]_\ 61_[+5(9.23e-05)]_19 chr3L:3826194-3826314 3.16e-04 34_[+3(8.58e-05)]_47_[+4(2.05e-05)]_\ 23 chr3R:28654771-28654891 3.40e-03 120 chr2R:9886523-9886643 3.53e-01 120 chrX:14222160-14222280 8.71e-02 120 chr3R:13539009-13539129 6.10e-01 120 chrX:7759990-7760110 4.88e-04 45_[+5(1.84e-05)]_67 chr2L:8506868-8506988 5.90e-02 120 chrX:1103985-1104105 1.12e-03 83_[+1(1.76e-05)]_29 chr3R:24663183-24663303 1.74e-01 120 chrX:14853314-14853434 5.89e-05 6_[+4(8.70e-05)]_81_[+4(7.76e-05)]_\ [+1(1.76e-05)]_9 chr3R:10971100-10971220 8.68e-03 120 chrX:1608638-1608758 7.69e-02 41_[+1(1.76e-05)]_13_[+1(1.76e-05)]_\ 50 chr3L:2503630-2503750 2.74e-03 120 chrX:11293706-11293826 5.92e-03 91_[+3(1.51e-05)]_21 chr3R:25665739-25665859 1.17e-04 34_[+5(9.19e-06)]_78 chrX:2580430-2580550 3.13e-02 120 chrX:1696236-1696356 5.09e-01 120 chr2R:15164854-15164974 1.07e-03 120 chr3R:28652825-28652945 1.15e-01 120 chr3L:857187-857307 2.53e-01 100_[+1(7.60e-05)]_12 chr2L:7674651-7674771 3.55e-02 58_[+3(8.58e-05)]_54 chr2L:12539978-12540098 1.78e-01 120 chr3R:13334110-13334230 6.84e-02 120 chrX:1410434-1410554 6.17e-01 120 chrX:15125654-15125774 1.90e-01 120 chr3L:1842092-1842212 1.01e-03 59_[+2(1.48e-05)]_23_[+5(9.19e-06)]_\ 22 chr3L:11513626-11513746 3.12e-03 19_[+4(7.76e-05)]_93 chrX:15973300-15973420 6.88e-02 120 chr2L:2903760-2903880 3.06e-03 60_[+4(2.05e-05)]_8_[+1(9.10e-05)]_\ 6_[+4(2.05e-05)]_22 chr2L:6874073-6874193 2.26e-02 97_[+5(3.99e-05)]_15 chr2R:9836554-9836674 3.21e-01 120 chrX:14321072-14321192 7.94e-01 120 chr3R:4077807-4077927 7.65e-02 120 chrX:21338995-21339115 3.14e-02 62_[+2(7.42e-05)]_50 chr3L:12688843-12688963 3.77e-01 120 chr3R:29377458-29377578 6.26e-03 42_[+2(7.42e-05)]_70 chr3L:1101581-1101701 8.32e-02 120 chrX:11695977-11696097 1.08e-02 1_[+5(9.23e-05)]_38_[+5(1.84e-05)]_\ 65 chr2L:17102445-17102565 6.22e-02 31_[+5(7.05e-05)]_81 chrX:18356229-18356349 9.08e-02 120 chr3R:31097270-31097390 1.24e-02 51_[+4(7.76e-05)]_61 chr3R:18950164-18950284 2.91e-02 76_[+3(5.80e-05)]_36 chr2R:16259829-16259949 7.75e-04 [+5(2.91e-05)]_83_[+3(5.80e-05)]_21 chr2L:5027455-5027575 1.63e-01 34_[+1(7.60e-05)]_78 chr3R:6259965-6260085 7.37e-02 34_[+1(1.76e-05)]_45_[+1(7.60e-05)]_\ 25 chrX:17740168-17740288 6.15e-01 120 chr3L:2282751-2282871 6.84e-03 120 chrX:3930964-3931084 8.01e-03 120 chr2R:24727509-24727629 2.34e-03 3_[+2(1.48e-05)]_71_[+5(9.23e-05)]_\ 30 chrX:6908201-6908321 1.95e-02 37_[+1(7.60e-05)]_75 chrX:11729166-11729286 1.78e-02 24_[+3(4.51e-05)]_88 chrX:16005230-16005350 6.62e-05 43_[+2(4.46e-05)]_69 chr3R:13279586-13279706 2.68e-02 60_[+2(5.94e-05)]_52 chr3R:23699002-23699122 4.09e-02 120 chr2R:24075995-24076115 5.82e-03 37_[+4(2.05e-05)]_75 chr2L:19605506-19605626 3.98e-04 52_[+3(3.01e-05)]_12_[+3(5.80e-05)]_\ 26_[+2(1.48e-05)]_6 chr3R:29660065-29660185 1.09e-02 17_[+1(1.76e-05)]_95 chr2L:1043270-1043390 1.12e-02 82_[+3(4.51e-05)]_30 chr3L:16394606-16394726 7.73e-02 120 chr2L:13717271-13717391 1.19e-01 120 chr2R:10350010-10350130 4.06e-02 105_[+5(9.23e-05)]_7 chr2L:19755205-19755325 9.75e-03 [+5(2.91e-05)]_22_[+2(5.94e-05)]_43_\ [+2(5.94e-05)]_31 chr2L:11928620-11928740 1.41e-02 84_[+2(4.46e-05)]_28 chr3L:6719531-6719651 3.60e-02 120 chr2R:23818941-23819061 7.95e-03 79_[+3(5.80e-05)]_33 chr3L:22034876-22034996 9.72e-02 120 chr3L:8582281-8582401 9.59e-03 66_[+4(2.05e-05)]_30_[+4(5.19e-05)]_\ 8 chr3L:13993372-13993492 2.69e-02 94_[+4(7.76e-05)]_18 chr2L:9729829-9729949 1.46e-02 120 chrX:13604719-13604839 3.18e-03 55_[+4(7.76e-05)]_57 chr2R:20698412-20698532 5.48e-01 120 chrX:21507540-21507660 4.68e-02 35_[+3(1.51e-05)]_77 chrX:9902551-9902671 2.77e-03 120 chr3L:5754105-5754225 1.24e-01 120 chrX:16063683-16063803 3.26e-04 4_[+1(3.50e-05)]_1_[+4(5.19e-05)]_\ 99 chrX:2950588-2950708 2.20e-03 8_[+2(5.94e-05)]_2_[+2(5.94e-05)]_2_\ [+2(5.94e-05)]_34_[+5(1.84e-05)]_42 chr3L:2488725-2488845 1.18e-01 1_[+3(9.86e-05)]_111 chrX:15496209-15496329 1.66e-02 34_[+2(4.46e-05)]_78 chr3L:267204-267324 4.05e-01 120 chr2R:8860658-8860778 2.38e-01 120 chr2L:9485648-9485768 2.67e-01 120 chr3R:12595696-12595816 1.82e-01 120 chr3L:8419918-8420038 3.13e-02 120 chr2L:13260923-13261043 1.79e-04 44_[+3(3.01e-05)]_[+3(3.01e-05)]_60 chr3R:31825717-31825837 1.86e-03 23_[+3(1.51e-05)]_35_[+1(1.76e-05)]_\ 46 chrX:6062996-6063116 5.95e-01 120 chr2L:19518733-19518853 4.34e-02 120 chr3R:10601339-10601459 2.97e-05 65_[+2(4.46e-05)]_4_[+5(3.99e-05)]_\ 35 chr2R:21969676-21969796 1.14e-01 120 chr3L:15899059-15899179 3.09e-01 120 chr3L:13803422-13803542 7.51e-05 68_[+3(1.51e-05)]_44 chr3R:26195207-26195327 1.37e-01 120 chr2R:24292509-24292629 3.52e-02 44_[+5(5.98e-05)]_68 chr2R:9351686-9351806 1.14e-01 62_[+1(1.76e-05)]_50 chr2L:14043782-14043902 8.71e-01 120 chr2R:24891414-24891534 1.94e-01 120 chr2R:14187215-14187335 9.02e-03 120 chr2R:24410533-24410653 5.24e-02 96_[+1(1.76e-05)]_16 chr2R:10234764-10234884 4.40e-03 94_[+3(1.51e-05)]_18 chrX:7607017-7607137 2.54e-02 120 chrX:13444845-13444965 6.83e-04 46_[+1(1.76e-05)]_66 chr2L:2006221-2006341 8.52e-02 120 chrX:15385282-15385402 2.54e-02 [+5(5.98e-05)]_112 chr2L:11149142-11149262 4.46e-01 120 chr3L:17689917-17690037 8.70e-03 65_[+4(2.05e-05)]_47 chr3R:29068124-29068244 3.43e-02 120 chrX:11039875-11039995 1.22e-01 92_[+1(1.76e-05)]_20 chrX:19844406-19844526 3.40e-02 31_[+5(9.23e-05)]_81 chr3L:18502574-18502694 4.97e-02 120 chr3R:4280177-4280297 1.46e-01 120 chr3L:18860589-18860709 1.24e-01 120 chr2R:13106257-13106377 4.95e-03 36_[+3(8.58e-05)]_76 chrX:6192537-6192657 3.56e-01 120 chrX:12568431-12568551 2.06e-01 120 chr2L:17903130-17903250 4.82e-03 88_[+1(3.50e-05)]_24 chr3L:6704724-6704844 1.49e-01 120 chr3R:9640436-9640556 2.88e-01 120 chr2R:12895631-12895751 1.98e-03 4_[+5(9.19e-06)]_1_[+2(5.94e-05)]_\ 12_[+2(5.94e-05)]_79 chr2L:13246000-13246120 1.25e-04 39_[+3(9.86e-05)]_[+1(3.50e-05)]_65 chrX:11303286-11303406 4.82e-02 46_[+1(7.60e-05)]_66 chrX:15443676-15443796 1.39e-01 120 chr3R:22701909-22702029 1.37e-02 120 chr3R:20484553-20484673 3.03e-04 56_[+3(1.51e-05)]_28_[+2(1.48e-05)]_\ 20 chr3L:17002631-17002751 3.28e-03 83_[+2(5.94e-05)]_29 chr2L:13803917-13804037 1.32e-03 60_[+1(1.76e-05)]_52 chr3R:7394186-7394306 4.96e-04 63_[+4(2.05e-05)]_49 chr3R:25209375-25209495 6.85e-02 52_[+2(5.94e-05)]_60 chr3R:12728058-12728178 6.20e-03 64_[+2(4.46e-05)]_48 chr2L:1048041-1048161 1.24e-01 120 chr3R:19664870-19664990 6.96e-05 5_[+5(3.99e-05)]_95_[+1(1.76e-05)]_\ 4 chr2L:18275803-18275923 3.21e-01 120 chr3L:1910243-1910363 3.27e-02 120 chr2R:11172190-11172310 2.61e-03 41_[+4(5.19e-05)]_71 chr3L:10201816-10201936 9.76e-03 83_[+2(1.48e-05)]_29 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************