******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dad.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:26859314-26859434 1.0000 120 chr3R:17056846-17056966 1.0000 120 chr3R:30789591-30789711 1.0000 120 chrX:19146478-19146598 1.0000 120 chr3R:19903477-19903597 1.0000 120 chrX:16650575-16650695 1.0000 120 chr3R:22150517-22150637 1.0000 120 chrX:15319360-15319480 1.0000 120 chr2L:16817799-16817919 1.0000 120 chr3R:26960559-26960679 1.0000 120 chr3R:16704387-16704507 1.0000 120 chr2R:23894829-23894949 1.0000 120 chr2L:4403111-4403231 1.0000 120 chr3R:22133807-22133927 1.0000 120 chr3R:17054003-17054123 1.0000 120 chrX:8677507-8677627 1.0000 120 chr3L:648240-648360 1.0000 120 chrX:3739759-3739879 1.0000 120 chr3L:721132-721252 1.0000 120 chr3R:5016464-5016584 1.0000 120 chr2R:20994801-20994921 1.0000 120 chrX:801686-801806 1.0000 120 chr2R:6938653-6938773 1.0000 120 chr2R:12198826-12198946 1.0000 120 chrX:14213685-14213805 1.0000 120 chrX:12221690-12221810 1.0000 120 chr2L:5944608-5944728 1.0000 120 chr2L:5972203-5972323 1.0000 120 chr3R:5065217-5065337 1.0000 120 chr2R:24186606-24186726 1.0000 120 chrX:13370930-13371050 1.0000 120 chr2L:13878932-13879052 1.0000 120 chr3L:10858828-10858948 1.0000 120 chr3R:16254596-16254716 1.0000 120 chrX:16781199-16781319 1.0000 120 chr3L:199221-199341 1.0000 120 chrX:6339131-6339251 1.0000 120 chr3L:21205112-21205232 1.0000 120 chr2R:10013308-10013428 1.0000 120 chr2L:20758347-20758467 1.0000 120 chr2R:7510145-7510265 1.0000 120 chr2L:4292692-4292812 1.0000 120 chr3L:1880819-1880939 1.0000 120 chr3R:8784925-8785045 1.0000 120 chrX:16547534-16547654 1.0000 120 chr2R:13509520-13509640 1.0000 120 chr3L:1139467-1139587 1.0000 120 chr3L:8440888-8441008 1.0000 120 chr3L:13015339-13015459 1.0000 120 chr2R:9553567-9553687 1.0000 120 chr3R:15278225-15278345 1.0000 120 chr2R:23868654-23868774 1.0000 120 chr3R:5287344-5287464 1.0000 120 chr3R:26937656-26937776 1.0000 120 chrX:7703113-7703233 1.0000 120 chr2L:7811407-7811527 1.0000 120 chr2L:13833754-13833874 1.0000 120 chr3L:8176021-8176141 1.0000 120 chr3L:10866726-10866846 1.0000 120 chr2R:23869583-23869703 1.0000 120 chr3R:23927626-23927746 1.0000 120 chr2L:19935182-19935302 1.0000 120 chr2L:20890049-20890169 1.0000 120 chrX:16350201-16350321 1.0000 120 chr3L:21349186-21349306 1.0000 120 chr3R:26799012-26799132 1.0000 120 chr2R:21713374-21713494 1.0000 120 chr2R:18421306-18421426 1.0000 120 chr2R:10265487-10265607 1.0000 120 chr3R:27151583-27151703 1.0000 120 chr2L:19121039-19121159 1.0000 120 chr2L:13445586-13445706 1.0000 120 chr2L:5055068-5055188 1.0000 120 chr2L:3100847-3100967 1.0000 120 chr3R:21408484-21408604 1.0000 120 chr2R:14009193-14009313 1.0000 120 chr2R:12519057-12519177 1.0000 120 chr3R:10648964-10649084 1.0000 120 chr3L:5136226-5136346 1.0000 120 chr3L:630187-630307 1.0000 120 chr3R:11888352-11888472 1.0000 120 chr3L:9614072-9614192 1.0000 120 chr3L:15563543-15563663 1.0000 120 chrX:17738280-17738400 1.0000 120 chr3R:22025418-22025538 1.0000 120 chr3R:25881323-25881443 1.0000 120 chr2L:8239821-8239941 1.0000 120 chr3R:25221512-25221632 1.0000 120 chr3R:26725185-26725305 1.0000 120 chrX:12015145-12015265 1.0000 120 chrX:10086347-10086467 1.0000 120 chr2R:22066852-22066972 1.0000 120 chrX:13257218-13257338 1.0000 120 chr2L:6956902-6957022 1.0000 120 chr3L:12799000-12799120 1.0000 120 chrX:5665950-5666070 1.0000 120 chr3L:19793535-19793655 1.0000 120 chr3R:11198229-11198349 1.0000 120 chrX:19521902-19522022 1.0000 120 chr3R:12980804-12980924 1.0000 120 chr3L:10694032-10694152 1.0000 120 chr3L:7361341-7361461 1.0000 120 chrX:16103496-16103616 1.0000 120 chr3L:8445099-8445219 1.0000 120 chr3R:17072662-17072782 1.0000 120 chr2R:11809519-11809639 1.0000 120 chr2L:6467704-6467824 1.0000 120 chr2L:14094770-14094890 1.0000 120 chr2L:19140950-19141070 1.0000 120 chr3L:4413157-4413277 1.0000 120 chr2R:19127993-19128113 1.0000 120 chr3R:14077123-14077243 1.0000 120 chr3R:11372754-11372874 1.0000 120 chr2R:12586823-12586943 1.0000 120 chr2R:22212662-22212782 1.0000 120 chr2R:5967696-5967816 1.0000 120 chrX:10600653-10600773 1.0000 120 chr2L:11809335-11809455 1.0000 120 chr2L:10767916-10768036 1.0000 120 chr3R:11581395-11581515 1.0000 120 chr3L:3165052-3165172 1.0000 120 chr3R:21118925-21119045 1.0000 120 chr2L:5944810-5944930 1.0000 120 chr3L:7978958-7979078 1.0000 120 chr3L:11833474-11833594 1.0000 120 chr3R:23922270-23922390 1.0000 120 chr3R:28857403-28857523 1.0000 120 chrX:3719769-3719889 1.0000 120 chr2R:12757524-12757644 1.0000 120 chr2R:17850774-17850894 1.0000 120 chrX:1517618-1517738 1.0000 120 chrX:6037382-6037502 1.0000 120 chrX:10387790-10387910 1.0000 120 chr3R:8301479-8301599 1.0000 120 chr3R:31669280-31669400 1.0000 120 chr3L:9509496-9509616 1.0000 120 chr3R:27239064-27239184 1.0000 120 chrX:18404972-18405092 1.0000 120 chr3L:8720217-8720337 1.0000 120 chrX:19643270-19643390 1.0000 120 chr2R:20906654-20906774 1.0000 120 chrX:10184795-10184915 1.0000 120 chrX:1478445-1478565 1.0000 120 chr3L:11534136-11534256 1.0000 120 chr3R:9502457-9502577 1.0000 120 chr2R:13261833-13261953 1.0000 120 chr3R:6818749-6818869 1.0000 120 chr2R:12274362-12274482 1.0000 120 chr2L:21344472-21344592 1.0000 120 chr3R:5758959-5759079 1.0000 120 chr3R:8033108-8033228 1.0000 120 chr2L:18590780-18590900 1.0000 120 chrX:1392926-1393046 1.0000 120 chr2L:18377241-18377361 1.0000 120 chr2R:17564802-17564922 1.0000 120 chrX:5671772-5671892 1.0000 120 chr3L:20194850-20194970 1.0000 120 chrX:1880354-1880474 1.0000 120 chr2L:20950773-20950893 1.0000 120 chr2L:203659-203779 1.0000 120 chrX:18635387-18635507 1.0000 120 chr3L:19991851-19991971 1.0000 120 chr3L:1463767-1463887 1.0000 120 chr3R:29039774-29039894 1.0000 120 chr2L:15254366-15254486 1.0000 120 chr2L:8541726-8541846 1.0000 120 chr2R:23818397-23818517 1.0000 120 chr3L:5768990-5769110 1.0000 120 chr3L:18840595-18840715 1.0000 120 chr3L:21484079-21484199 1.0000 120 chr3L:18898155-18898275 1.0000 120 chr2R:23856913-23857033 1.0000 120 chr2R:12025176-12025296 1.0000 120 chr3R:8181537-8181657 1.0000 120 chrX:16683887-16684007 1.0000 120 chr2R:13897626-13897746 1.0000 120 chr2R:20274484-20274604 1.0000 120 chr2R:10782845-10782965 1.0000 120 chr2R:17514156-17514276 1.0000 120 chr3L:3983496-3983616 1.0000 120 chr2R:18125814-18125934 1.0000 120 chr2L:3598614-3598734 1.0000 120 chr3R:24010940-24011060 1.0000 120 chr2R:22375004-22375124 1.0000 120 chr3R:22147627-22147747 1.0000 120 chr3L:6054903-6055023 1.0000 120 chr3L:16969792-16969912 1.0000 120 chr3R:5685702-5685822 1.0000 120 chrX:15739050-15739170 1.0000 120 chr2L:19508730-19508850 1.0000 120 chr2R:25085528-25085648 1.0000 120 chr2R:17590766-17590886 1.0000 120 chr2L:1629739-1629859 1.0000 120 chr3L:554797-554917 1.0000 120 chr2L:20918872-20918992 1.0000 120 chr3L:4292245-4292365 1.0000 120 chr3L:9402384-9402504 1.0000 120 chr2L:16719717-16719837 1.0000 120 chr3L:3896801-3896921 1.0000 120 chr3R:15263428-15263548 1.0000 120 chr3L:5654646-5654766 1.0000 120 chr2R:24174804-24174924 1.0000 120 chr2R:21282293-21282413 1.0000 120 chrX:19852077-19852197 1.0000 120 chrX:1858951-1859071 1.0000 120 chr2L:16275869-16275989 1.0000 120 chr3R:26567004-26567124 1.0000 120 chrX:19308150-19308270 1.0000 120 chrX:6741283-6741403 1.0000 120 chr3R:25004892-25005012 1.0000 120 chr2R:18829735-18829855 1.0000 120 chr3R:15472812-15472932 1.0000 120 chr2R:8900193-8900313 1.0000 120 chr2L:11203750-11203870 1.0000 120 chr3L:9899195-9899315 1.0000 120 chr3R:23923092-23923212 1.0000 120 chr2R:24086550-24086670 1.0000 120 chrX:19505723-19505843 1.0000 120 chr2R:25011477-25011597 1.0000 120 chr2L:5980980-5981100 1.0000 120 chrX:15860657-15860777 1.0000 120 chr2R:7525731-7525851 1.0000 120 chr3L:13486713-13486833 1.0000 120 chrX:5639279-5639399 1.0000 120 chr2R:14267780-14267900 1.0000 120 chr3L:5789897-5790017 1.0000 120 chr2R:17545074-17545194 1.0000 120 chr2R:9426445-9426565 1.0000 120 chr2L:16703805-16703925 1.0000 120 chrX:5084729-5084849 1.0000 120 chr2R:17062635-17062755 1.0000 120 chr3R:9677836-9677956 1.0000 120 chr3L:8289841-8289961 1.0000 120 chrX:15892054-15892174 1.0000 120 chr3L:1376080-1376200 1.0000 120 chr2R:23383452-23383572 1.0000 120 chr3R:20008824-20008944 1.0000 120 chr3R:5613110-5613230 1.0000 120 chr3R:27273626-27273746 1.0000 120 chr3L:18791532-18791652 1.0000 120 chr2L:10468555-10468675 1.0000 120 chrX:7015084-7015204 1.0000 120 chr2R:21060557-21060677 1.0000 120 chr2R:7474281-7474401 1.0000 120 chrX:1890082-1890202 1.0000 120 chr3L:15825573-15825693 1.0000 120 chr2R:16170796-16170916 1.0000 120 chr3R:21850273-21850393 1.0000 120 chr3L:7360457-7360577 1.0000 120 chrX:4366298-4366418 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Dad/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dad.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.21 G 0.211 T 0.293 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.21 G 0.211 T 0.293 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 58 llr = 510 E-value = 4.3e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a:::a27 pos.-specific C :::a:::: probability G ::::a::3 matrix T 7:a:::8: bits 2.3 ** 2.0 ** 1.8 * *** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ******* (12.7 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7360457-7360577 63 2.61e-05 GCCTCCCGCC TATCGATA GCCGTGCAAT chr3R:5613110-5613230 34 2.61e-05 ACAGCGTTGG TATCGATA GTAGTTAGTT chr3R:20008824-20008944 112 2.61e-05 ATAAGTTGAC TATCGATA G chrX:5084729-5084849 57 2.61e-05 CAACAGTCAC TATCGATA CTTTGTAGGT chrX:19505723-19505843 109 2.61e-05 AGCACCAAAC TATCGATA ACGA chr2R:24086550-24086670 33 2.61e-05 tctgtgtctc tatcgata CCCGCGTGTG chr2R:8900193-8900313 42 2.61e-05 AACGCCAACT TATCGATA CTTTATCGAG chr2R:24174804-24174924 40 2.61e-05 TAGTCACACT TATCGATA GACCGCGCAC chr3R:15263428-15263548 100 2.61e-05 CTGCGATGCG TATCGATA GAGTGCCGCC chr2R:22375004-22375124 45 2.61e-05 AGCCCTAGCA TATCGATA GCACGTAGCG chrX:16683887-16684007 40 2.61e-05 ATCAAGCACT TATCGATA ACCGTGTGCA chr2R:23856913-23857033 15 2.61e-05 AGGCGATACT TATCGATA GCTTTGCTAT chr2L:203659-203779 112 2.61e-05 AATATCTGGC TATCGATA A chr3R:27239064-27239184 83 2.61e-05 TGACTATGCT TATCGATA AGAAAACTCA chr3L:11833474-11833594 108 2.61e-05 ACTGTCCAGC TATCGATA GGTCG chr2L:11809335-11809455 87 2.61e-05 CTGGAAGAAG TATCGATA TGACATCGAT chr2R:12586823-12586943 71 2.61e-05 AATATTTATA TATCGATA CCGCCAAGGG chr2L:6956902-6957022 71 2.61e-05 CCCTGGCAGA TATCGATA GGCCCATCGA chr3R:25221512-25221632 12 2.61e-05 TCTACACATA TATCGATA ACAAATCTGA chr2R:18421306-18421426 78 2.61e-05 CGAAAGCTGC TATCGATA GTGACATTCC chr3L:13015339-13015459 17 2.61e-05 TGTCAGCAGC TATCGATA GTTGTTTCGT chr2R:20994801-20994921 4 2.61e-05 TTA TATCGATA TGTGGATAAA chrX:15892054-15892174 38 4.53e-05 CTATTCGATA TATCGATG TATCGCGAGT chr3L:8289841-8289961 64 4.53e-05 GTCGTTACGC TATCGATG TCTTACTCTC chr2R:17062635-17062755 75 4.53e-05 CGCCGGCATA TATCGATG AATGAAGATC chr3L:13486713-13486833 68 4.53e-05 GCTGAGCAAA TATCGATG TGAATACAGA chr2R:25011477-25011597 39 4.53e-05 CATTCGGACA TATCGATG CATCGATATG chr2L:19508730-19508850 10 4.53e-05 TGGAACTTA TATCGATG CTTACCCGAT chr2L:21344472-21344592 97 4.53e-05 TGGCGTGAGG TATCGATG ACCATGCGCT chr3L:7978958-7979078 36 4.53e-05 ACATCGGACC TATCGATG TTTCTATCGG chr2L:10767916-10768036 90 4.53e-05 CTTAGCGAAC TATCGATG TTCGGCTTCT chr2R:5967696-5967816 100 4.53e-05 TGTCGATAGT TATCGATG TTGTAAGCTG chrX:19521902-19522022 107 4.53e-05 AGATGTCGAA TATCGATG TCGTCT chr2R:23383452-23383572 31 7.08e-05 TTGCGATTTT AATCGATA ACGCTTTATA chr3R:23923092-23923212 31 7.08e-05 TCGATTCTAG AATCGATA TCGGACTTAT chr2L:20918872-20918992 91 7.08e-05 TAGCTCTTGC AATCGATA GCTCGATAAG chr2R:17850774-17850894 66 7.08e-05 GCACTAGTGC AATCGATA GATCGATATG chr3L:3165052-3165172 59 7.08e-05 AACGGAATGC AATCGATA CAAGAAAAAT chr3R:12980804-12980924 1 7.08e-05 . AATCGATA GCTGTTTGAT chrX:5665950-5666070 52 7.08e-05 CCGCAATGGC AATCGATA ACTGTACGAC chrX:17738280-17738400 46 7.08e-05 AAAATCGATT AATCGATA GCGACAAAAA chrX:801686-801806 110 7.08e-05 AGCTAGTTGT AATCGATA GCC chr2L:5980980-5981100 54 1.15e-04 CGCTCGAAAC AATCGATG TGTGCCAAAA chr2R:18125814-18125934 71 1.15e-04 ATTTTATGCC TATCGAAA TTGATAACTT chr2R:17514156-17514276 28 1.15e-04 GAAAGCAAGT AATCGATG ATTTCCCCAG chr2R:12757524-12757644 48 1.15e-04 TCACTCCGCC TATCGAAA TTACGCATTA chr2R:13509520-13509640 43 1.15e-04 AATAGAGTGG TATCGAAA TGGAGCCGAT chrX:16547534-16547654 22 1.15e-04 GATTACTGTA AATCGATG TTAATCGAAA chrX:13370930-13371050 30 1.15e-04 TATCGCCGTC TATCGAAA GTTTGGCTGC chr3R:9677836-9677956 32 1.34e-04 TGAGTACAAC TATCGAAG TTTCGCACCC chrX:15860657-15860777 104 1.59e-04 TCCTTGCTCC AATCGAAA GGGCCACTT chr3R:31669280-31669400 90 1.59e-04 GCCAATGCAC AATCGAAA GTGGTCGTTC chr3L:5136226-5136346 36 1.59e-04 TCACCAATTT AATCGAAA AACCAGGTCA chr2L:3100847-3100967 46 1.59e-04 TTCGGAAAAA AATCGAAA TTTATGCTGG chr3L:19991851-19991971 24 1.77e-04 CAGCAGCACA CATCGATA AGGCGCTCGT chr2L:4403111-4403231 112 1.77e-04 TGACAGCTGT CATCGATA T chrX:4366298-4366418 68 1.96e-04 GCTGAACGCT TACCGATA ATCATCGACG chr2L:18590780-18590900 93 1.96e-04 TAATCTAAGA TACCGATA GCATCGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7360457-7360577 2.6e-05 62_[+1]_50 chr3R:5613110-5613230 2.6e-05 33_[+1]_79 chr3R:20008824-20008944 2.6e-05 111_[+1]_1 chrX:5084729-5084849 2.6e-05 56_[+1]_56 chrX:19505723-19505843 2.6e-05 108_[+1]_4 chr2R:24086550-24086670 2.6e-05 32_[+1]_80 chr2R:8900193-8900313 2.6e-05 41_[+1]_71 chr2R:24174804-24174924 2.6e-05 39_[+1]_73 chr3R:15263428-15263548 2.6e-05 99_[+1]_13 chr2R:22375004-22375124 2.6e-05 44_[+1]_68 chrX:16683887-16684007 2.6e-05 39_[+1]_73 chr2R:23856913-23857033 2.6e-05 14_[+1]_98 chr2L:203659-203779 2.6e-05 111_[+1]_1 chr3R:27239064-27239184 2.6e-05 82_[+1]_30 chr3L:11833474-11833594 2.6e-05 107_[+1]_5 chr2L:11809335-11809455 2.6e-05 86_[+1]_26 chr2R:12586823-12586943 2.6e-05 70_[+1]_42 chr2L:6956902-6957022 2.6e-05 70_[+1]_42 chr3R:25221512-25221632 2.6e-05 11_[+1]_101 chr2R:18421306-18421426 2.6e-05 77_[+1]_35 chr3L:13015339-13015459 2.6e-05 16_[+1]_96 chr2R:20994801-20994921 2.6e-05 3_[+1]_109 chrX:15892054-15892174 4.5e-05 37_[+1]_75 chr3L:8289841-8289961 4.5e-05 63_[+1]_49 chr2R:17062635-17062755 4.5e-05 74_[+1]_38 chr3L:13486713-13486833 4.5e-05 67_[+1]_45 chr2R:25011477-25011597 4.5e-05 38_[+1]_74 chr2L:19508730-19508850 4.5e-05 9_[+1]_103 chr2L:21344472-21344592 4.5e-05 96_[+1]_16 chr3L:7978958-7979078 4.5e-05 35_[+1]_77 chr2L:10767916-10768036 4.5e-05 89_[+1]_23 chr2R:5967696-5967816 4.5e-05 99_[+1]_13 chrX:19521902-19522022 4.5e-05 106_[+1]_6 chr2R:23383452-23383572 7.1e-05 30_[+1]_82 chr3R:23923092-23923212 7.1e-05 30_[+1]_82 chr2L:20918872-20918992 7.1e-05 90_[+1]_22 chr2R:17850774-17850894 7.1e-05 65_[+1]_47 chr3L:3165052-3165172 7.1e-05 58_[+1]_54 chr3R:12980804-12980924 7.1e-05 [+1]_112 chrX:5665950-5666070 7.1e-05 51_[+1]_61 chrX:17738280-17738400 7.1e-05 45_[+1]_67 chrX:801686-801806 7.1e-05 109_[+1]_3 chr2L:5980980-5981100 0.00011 53_[+1]_59 chr2R:18125814-18125934 0.00011 70_[+1]_42 chr2R:17514156-17514276 0.00011 27_[+1]_85 chr2R:12757524-12757644 0.00011 47_[+1]_65 chr2R:13509520-13509640 0.00011 42_[+1]_70 chrX:16547534-16547654 0.00011 21_[+1]_91 chrX:13370930-13371050 0.00011 29_[+1]_83 chr3R:9677836-9677956 0.00013 31_[+1]_81 chrX:15860657-15860777 0.00016 103_[+1]_9 chr3R:31669280-31669400 0.00016 89_[+1]_23 chr3L:5136226-5136346 0.00016 35_[+1]_77 chr2L:3100847-3100967 0.00016 45_[+1]_67 chr3L:19991851-19991971 0.00018 23_[+1]_89 chr2L:4403111-4403231 0.00018 111_[+1]_1 chrX:4366298-4366418 0.0002 67_[+1]_45 chr2L:18590780-18590900 0.0002 92_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=58 chr3L:7360457-7360577 ( 63) TATCGATA 1 chr3R:5613110-5613230 ( 34) TATCGATA 1 chr3R:20008824-20008944 ( 112) TATCGATA 1 chrX:5084729-5084849 ( 57) TATCGATA 1 chrX:19505723-19505843 ( 109) TATCGATA 1 chr2R:24086550-24086670 ( 33) TATCGATA 1 chr2R:8900193-8900313 ( 42) TATCGATA 1 chr2R:24174804-24174924 ( 40) TATCGATA 1 chr3R:15263428-15263548 ( 100) TATCGATA 1 chr2R:22375004-22375124 ( 45) TATCGATA 1 chrX:16683887-16684007 ( 40) TATCGATA 1 chr2R:23856913-23857033 ( 15) TATCGATA 1 chr2L:203659-203779 ( 112) TATCGATA 1 chr3R:27239064-27239184 ( 83) TATCGATA 1 chr3L:11833474-11833594 ( 108) TATCGATA 1 chr2L:11809335-11809455 ( 87) TATCGATA 1 chr2R:12586823-12586943 ( 71) TATCGATA 1 chr2L:6956902-6957022 ( 71) TATCGATA 1 chr3R:25221512-25221632 ( 12) TATCGATA 1 chr2R:18421306-18421426 ( 78) TATCGATA 1 chr3L:13015339-13015459 ( 17) TATCGATA 1 chr2R:20994801-20994921 ( 4) TATCGATA 1 chrX:15892054-15892174 ( 38) TATCGATG 1 chr3L:8289841-8289961 ( 64) TATCGATG 1 chr2R:17062635-17062755 ( 75) TATCGATG 1 chr3L:13486713-13486833 ( 68) TATCGATG 1 chr2R:25011477-25011597 ( 39) TATCGATG 1 chr2L:19508730-19508850 ( 10) TATCGATG 1 chr2L:21344472-21344592 ( 97) TATCGATG 1 chr3L:7978958-7979078 ( 36) TATCGATG 1 chr2L:10767916-10768036 ( 90) TATCGATG 1 chr2R:5967696-5967816 ( 100) TATCGATG 1 chrX:19521902-19522022 ( 107) TATCGATG 1 chr2R:23383452-23383572 ( 31) AATCGATA 1 chr3R:23923092-23923212 ( 31) AATCGATA 1 chr2L:20918872-20918992 ( 91) AATCGATA 1 chr2R:17850774-17850894 ( 66) AATCGATA 1 chr3L:3165052-3165172 ( 59) AATCGATA 1 chr3R:12980804-12980924 ( 1) AATCGATA 1 chrX:5665950-5666070 ( 52) AATCGATA 1 chrX:17738280-17738400 ( 46) AATCGATA 1 chrX:801686-801806 ( 110) AATCGATA 1 chr2L:5980980-5981100 ( 54) AATCGATG 1 chr2R:18125814-18125934 ( 71) TATCGAAA 1 chr2R:17514156-17514276 ( 28) AATCGATG 1 chr2R:12757524-12757644 ( 48) TATCGAAA 1 chr2R:13509520-13509640 ( 43) TATCGAAA 1 chrX:16547534-16547654 ( 22) AATCGATG 1 chrX:13370930-13371050 ( 30) TATCGAAA 1 chr3R:9677836-9677956 ( 32) TATCGAAG 1 chrX:15860657-15860777 ( 104) AATCGAAA 1 chr3R:31669280-31669400 ( 90) AATCGAAA 1 chr3L:5136226-5136346 ( 36) AATCGAAA 1 chr2L:3100847-3100967 ( 46) AATCGAAA 1 chr3L:19991851-19991971 ( 24) CATCGATA 1 chr2L:4403111-4403231 ( 112) CATCGATA 1 chrX:4366298-4366418 ( 68) TACCGATA 1 chr2L:18590780-18590900 ( 93) TACCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.56683 E= 4.3e-026 -5 -260 -1250 123 181 -1250 -1250 -1250 -1250 -260 -1250 172 -1250 225 -1250 -1250 -1250 -1250 224 -1250 181 -1250 -1250 -1250 -88 -1250 -1250 153 138 -1250 29 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.3e-026 0.275862 0.034483 0.000000 0.689655 1.000000 0.000000 0.000000 0.000000 0.000000 0.034483 0.000000 0.965517 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.155172 0.000000 0.000000 0.844828 0.741379 0.000000 0.258621 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AG] -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACACTG MEME-2 width = 8 sites = 27 llr = 256 E-value = 2.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :89:9::: pos.-specific C a1:a1a:: probability G ::1::::9 matrix T :1::::a1 bits 2.3 * * * 2.0 * * * 1.8 * * *** 1.6 * * *** Relative 1.4 * ***** Entropy 1.1 * ****** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9426445-9426565 12 1.34e-05 CGTTGGTTTC CAACACTG CGGCTCTCCC chr3L:9899195-9899315 30 1.34e-05 ATCTATTGGC CAACACTG GCAACCCAAG chr3L:3896801-3896921 37 1.34e-05 TGGCAATTTA CAACACTG AAACCGGGCT chr2L:1629739-1629859 67 1.34e-05 TTACGCAAGA CAACACTG CGTATGATTT chr3R:5685702-5685822 88 1.34e-05 CGTCCCTTTG CAACACTG CTTCCCAGTG chr3R:29039774-29039894 105 1.34e-05 GTATGTTTAC CAACACTG CGTTCGTT chrX:1392926-1393046 38 1.34e-05 TGGCGTTGCC CAACACTG ACCAGCCAGC chr2L:14094770-14094890 91 1.34e-05 TCGTGCTAGC CAACACTG ATATCAGTGC chr3R:17072662-17072782 60 1.34e-05 GCGTGCTAGC CAACACTG CCAGTGTTGC chr3R:22025418-22025538 108 1.34e-05 ACGCGCTTTT CAACACTG CCAGA chrX:16350201-16350321 84 1.34e-05 TACGGCCTGG CAACACTG GCACTTTCCT chr2R:13509520-13509640 103 1.34e-05 CGACATTTTA CAACACTG CTGCAACCGC chr2R:10782845-10782965 105 2.32e-05 CGGCATGCGG CCACACTG CTGCCCAA chr2R:17564802-17564922 51 2.32e-05 TCGACGTTCA CCACACTG GCAATAGTTG chr3L:1139467-1139587 39 2.32e-05 GTTGGCTCCG CCACACTG GCAGAAAAAG chr2L:20758347-20758467 49 2.32e-05 GTAAGGAGTA CCACACTG CAAGAAAAAG chr2R:17545074-17545194 27 3.31e-05 TGAATTTGTA CAGCACTG CCAGGCGATA chr2R:23818397-23818517 72 3.31e-05 AGCCGACTTG CAGCACTG GCCTTTGGAA chr2L:13445586-13445706 47 3.31e-05 ATGCGTTTTG CAGCACTG CCTGTGTGAC chrX:19505723-19505843 72 4.29e-05 GCTGAGCTGG CAACCCTG ATGCCATCGA chr3L:4292245-4292365 19 4.29e-05 CTCGCTGTAG CAACCCTG TTTCAGTATT chr2R:18829735-18829855 80 5.67e-05 TTTTAACGCT CTACACTG GATCGATTTT chr2L:4292692-4292812 19 5.67e-05 ACATGGAGAA CTACACTG AGCGCAAAAT chrX:15892054-15892174 2 8.51e-05 C CAACACTT AGCTTCGGCA chr2R:13261833-13261953 104 8.51e-05 GTATTATAAA CAACACTT ATAAAAATG chrX:19643270-19643390 44 8.51e-05 GCATCCCTGC CACCACTG ACAGCTCGGC chrX:16547534-16547654 44 9.50e-05 TCGAAAGGGG CAACGCTG TCTACACGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9426445-9426565 1.3e-05 11_[+2]_101 chr3L:9899195-9899315 1.3e-05 29_[+2]_83 chr3L:3896801-3896921 1.3e-05 36_[+2]_76 chr2L:1629739-1629859 1.3e-05 66_[+2]_46 chr3R:5685702-5685822 1.3e-05 87_[+2]_25 chr3R:29039774-29039894 1.3e-05 104_[+2]_8 chrX:1392926-1393046 1.3e-05 37_[+2]_75 chr2L:14094770-14094890 1.3e-05 90_[+2]_22 chr3R:17072662-17072782 1.3e-05 59_[+2]_53 chr3R:22025418-22025538 1.3e-05 107_[+2]_5 chrX:16350201-16350321 1.3e-05 83_[+2]_29 chr2R:13509520-13509640 1.3e-05 102_[+2]_10 chr2R:10782845-10782965 2.3e-05 104_[+2]_8 chr2R:17564802-17564922 2.3e-05 50_[+2]_62 chr3L:1139467-1139587 2.3e-05 38_[+2]_74 chr2L:20758347-20758467 2.3e-05 48_[+2]_64 chr2R:17545074-17545194 3.3e-05 26_[+2]_86 chr2R:23818397-23818517 3.3e-05 71_[+2]_41 chr2L:13445586-13445706 3.3e-05 46_[+2]_66 chrX:19505723-19505843 4.3e-05 71_[+2]_41 chr3L:4292245-4292365 4.3e-05 18_[+2]_94 chr2R:18829735-18829855 5.7e-05 79_[+2]_33 chr2L:4292692-4292812 5.7e-05 18_[+2]_94 chrX:15892054-15892174 8.5e-05 1_[+2]_111 chr2R:13261833-13261953 8.5e-05 103_[+2]_9 chrX:19643270-19643390 8.5e-05 43_[+2]_69 chrX:16547534-16547654 9.5e-05 43_[+2]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACACTG width=8 seqs=27 chr2R:9426445-9426565 ( 12) CAACACTG 1 chr3L:9899195-9899315 ( 30) CAACACTG 1 chr3L:3896801-3896921 ( 37) CAACACTG 1 chr2L:1629739-1629859 ( 67) CAACACTG 1 chr3R:5685702-5685822 ( 88) CAACACTG 1 chr3R:29039774-29039894 ( 105) CAACACTG 1 chrX:1392926-1393046 ( 38) CAACACTG 1 chr2L:14094770-14094890 ( 91) CAACACTG 1 chr3R:17072662-17072782 ( 60) CAACACTG 1 chr3R:22025418-22025538 ( 108) CAACACTG 1 chrX:16350201-16350321 ( 84) CAACACTG 1 chr2R:13509520-13509640 ( 103) CAACACTG 1 chr2R:10782845-10782965 ( 105) CCACACTG 1 chr2R:17564802-17564922 ( 51) CCACACTG 1 chr3L:1139467-1139587 ( 39) CCACACTG 1 chr2L:20758347-20758467 ( 49) CCACACTG 1 chr2R:17545074-17545194 ( 27) CAGCACTG 1 chr2R:23818397-23818517 ( 72) CAGCACTG 1 chr2L:13445586-13445706 ( 47) CAGCACTG 1 chrX:19505723-19505843 ( 72) CAACCCTG 1 chr3L:4292245-4292365 ( 19) CAACCCTG 1 chr2R:18829735-18829855 ( 80) CTACACTG 1 chr2L:4292692-4292812 ( 19) CTACACTG 1 chrX:15892054-15892174 ( 2) CAACACTT 1 chr2R:13261833-13261953 ( 104) CAACACTT 1 chrX:19643270-19643390 ( 44) CACCACTG 1 chrX:16547534-16547654 ( 44) CAACGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5992 E= 2.0e-004 -1140 225 -1140 -1140 144 -50 -1140 -198 158 -250 -92 -1140 -1140 225 -1140 -1140 164 -150 -251 -1140 -1140 225 -1140 -1140 -1140 -1140 -1140 177 -1140 -1140 213 -198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.0e-004 0.000000 1.000000 0.000000 0.000000 0.777778 0.148148 0.000000 0.074074 0.851852 0.037037 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.074074 0.037037 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.925926 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 regular expression -------------------------------------------------------------------------------- CAACACTG -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GCASWGYG MEME-3 width = 8 sites = 32 llr = 278 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::8:4::: pos.-specific C :a:51:3: probability G a:251a:a matrix T ::::4:7: bits 2.3 ** * * 2.0 ** * * 1.8 ** * * 1.6 ** * * Relative 1.4 ** * * * Entropy 1.1 **** * * (12.5 bits) 0.9 **** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel GCACTGTG consensus GGA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1858951-1859071 71 4.03e-05 AAGAATCCAT GCACAGTG GGTACTACTT chr2L:19508730-19508850 46 4.03e-05 CAGCAGTCGG GCAGTGTG ACCATGACGG chr2R:10782845-10782965 50 4.03e-05 GAGCGTCGGC GCAGTGTG GCCTTTGATC chr3R:9502457-9502577 22 4.03e-05 CGACTTGATC GCAGTGTG GATGTGGATT chr3R:23922270-23922390 28 4.03e-05 GGACAATACG GCACAGTG GGCAATAGCC chr3R:17072662-17072782 85 4.03e-05 TGCCAGACTG GCAGTGTG ATGTAATTTG chr3L:19793535-19793655 39 4.03e-05 ATGTGATGTA GCAGTGTG GCCAGTGCGT chr2L:3100847-3100967 63 4.03e-05 ATTTATGCTG GCACAGTG GTTAAGATAT chrX:16350201-16350321 24 4.03e-05 GAAATACACC GCAGTGTG AACGCCCCAT chr2R:24186606-24186726 99 4.03e-05 TGGATTTATC GCAGTGTG TTTGTCTGCC chr3R:19903477-19903597 36 4.03e-05 GCCGCGCAAC GCACAGTG GAACACAAAG chr3R:26859314-26859434 18 4.03e-05 AACGTGCAAC GCAGTGTG CACTGAGAGA chr2L:16703805-16703925 76 6.92e-05 GGGGTTGTTC GCAGAGCG TGTCGATGTA chr3L:1463767-1463887 5 6.92e-05 CACC GCACAGCG AGCACTTATA chrX:6037382-6037502 73 6.92e-05 TGGTCACACC GCACAGCG GGCCAAGCTC chr2R:9553567-9553687 29 6.92e-05 ATTTGCAGCT GCACAGCG ACCAAAGTTG chr2R:7510145-7510265 59 6.92e-05 GGCCAGTGCT GCACAGCG CAAGAATAGG chr2L:4403111-4403231 41 6.92e-05 GAACGTTCTT GCACTGCG TTTTATTGGG chr2L:11203750-11203870 112 8.39e-05 TTCTCTGAGT GCAGGGTG C chr2R:20274484-20274604 40 8.39e-05 GTGTGCCCTT GCAGGGTG TGCGGATTAA chr2L:18377241-18377361 12 8.39e-05 CAGGGTGTCT GCAGGGTG TGTCCGACTT chr3R:8301479-8301599 79 8.39e-05 CTGCGCCAGA GCACGGTG GAGCCCCTCC chr2R:14267780-14267900 62 1.14e-04 GTAACGGTGC GCGCAGTG TAAGTTTCTC chr3R:29039774-29039894 23 1.14e-04 TCATAGCCAA GCGGAGTG GTTAGCATAC chrX:13257218-13257338 41 1.14e-04 acatACATGT GCGCTGTG CAAGCAGTGG chr3R:23927626-23927746 17 1.14e-04 GTTTTAGGTA GCGGTGTG CGCAGGGATG chr3L:18840595-18840715 68 1.39e-04 GCTAGTGGTG GCACCGTG AGCATGCCGG chr3L:5654646-5654766 75 1.60e-04 AGTGCGTCGT GCGCAGCG GCAGCGTTTT chrX:17738280-17738400 100 1.60e-04 ACATCGCTGC GCGCTGCG CAAATGTTTT chr2L:5944608-5944728 24 1.60e-04 ctctctctct gcgctgcg ctctggctGC chr3R:9677836-9677956 81 1.71e-04 TCACATCTCC GCAGCGCG CTCGGTAACT chr2R:24174804-24174924 84 1.71e-04 CCATTTTCTC GCAGCGCG CAACACGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1858951-1859071 4e-05 70_[+3]_42 chr2L:19508730-19508850 4e-05 45_[+3]_67 chr2R:10782845-10782965 4e-05 49_[+3]_63 chr3R:9502457-9502577 4e-05 21_[+3]_91 chr3R:23922270-23922390 4e-05 27_[+3]_85 chr3R:17072662-17072782 4e-05 84_[+3]_28 chr3L:19793535-19793655 4e-05 38_[+3]_74 chr2L:3100847-3100967 4e-05 62_[+3]_50 chrX:16350201-16350321 4e-05 23_[+3]_89 chr2R:24186606-24186726 4e-05 98_[+3]_14 chr3R:19903477-19903597 4e-05 35_[+3]_77 chr3R:26859314-26859434 4e-05 17_[+3]_95 chr2L:16703805-16703925 6.9e-05 75_[+3]_37 chr3L:1463767-1463887 6.9e-05 4_[+3]_108 chrX:6037382-6037502 6.9e-05 72_[+3]_40 chr2R:9553567-9553687 6.9e-05 28_[+3]_84 chr2R:7510145-7510265 6.9e-05 58_[+3]_54 chr2L:4403111-4403231 6.9e-05 40_[+3]_72 chr2L:11203750-11203870 8.4e-05 111_[+3]_1 chr2R:20274484-20274604 8.4e-05 39_[+3]_73 chr2L:18377241-18377361 8.4e-05 11_[+3]_101 chr3R:8301479-8301599 8.4e-05 78_[+3]_34 chr2R:14267780-14267900 0.00011 61_[+3]_51 chr3R:29039774-29039894 0.00011 22_[+3]_90 chrX:13257218-13257338 0.00011 40_[+3]_72 chr3R:23927626-23927746 0.00011 16_[+3]_96 chr3L:18840595-18840715 0.00014 67_[+3]_45 chr3L:5654646-5654766 0.00016 74_[+3]_38 chrX:17738280-17738400 0.00016 99_[+3]_13 chr2L:5944608-5944728 0.00016 23_[+3]_89 chr3R:9677836-9677956 0.00017 80_[+3]_32 chr2R:24174804-24174924 0.00017 83_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCASWGYG width=8 seqs=32 chrX:1858951-1859071 ( 71) GCACAGTG 1 chr2L:19508730-19508850 ( 46) GCAGTGTG 1 chr2R:10782845-10782965 ( 50) GCAGTGTG 1 chr3R:9502457-9502577 ( 22) GCAGTGTG 1 chr3R:23922270-23922390 ( 28) GCACAGTG 1 chr3R:17072662-17072782 ( 85) GCAGTGTG 1 chr3L:19793535-19793655 ( 39) GCAGTGTG 1 chr2L:3100847-3100967 ( 63) GCACAGTG 1 chrX:16350201-16350321 ( 24) GCAGTGTG 1 chr2R:24186606-24186726 ( 99) GCAGTGTG 1 chr3R:19903477-19903597 ( 36) GCACAGTG 1 chr3R:26859314-26859434 ( 18) GCAGTGTG 1 chr2L:16703805-16703925 ( 76) GCAGAGCG 1 chr3L:1463767-1463887 ( 5) GCACAGCG 1 chrX:6037382-6037502 ( 73) GCACAGCG 1 chr2R:9553567-9553687 ( 29) GCACAGCG 1 chr2R:7510145-7510265 ( 59) GCACAGCG 1 chr2L:4403111-4403231 ( 41) GCACTGCG 1 chr2L:11203750-11203870 ( 112) GCAGGGTG 1 chr2R:20274484-20274604 ( 40) GCAGGGTG 1 chr2L:18377241-18377361 ( 12) GCAGGGTG 1 chr3R:8301479-8301599 ( 79) GCACGGTG 1 chr2R:14267780-14267900 ( 62) GCGCAGTG 1 chr3R:29039774-29039894 ( 23) GCGGAGTG 1 chrX:13257218-13257338 ( 41) GCGCTGTG 1 chr3R:23927626-23927746 ( 17) GCGGTGTG 1 chr3L:18840595-18840715 ( 68) GCACCGTG 1 chr3L:5654646-5654766 ( 75) GCGCAGCG 1 chrX:17738280-17738400 ( 100) GCGCTGCG 1 chr2L:5944608-5944728 ( 24) GCGCTGCG 1 chr3R:9677836-9677956 ( 81) GCAGCGCG 1 chr2R:24174804-24174924 ( 84) GCAGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 1.1e+002 -1164 -1164 224 -1164 -1164 225 -1164 -1164 145 -1164 5 -1164 -1164 125 124 -1164 39 -116 -75 47 -1164 -1164 224 -1164 -1164 71 -1164 116 -1164 -1164 224 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.781250 0.000000 0.218750 0.000000 0.000000 0.500000 0.500000 0.000000 0.375000 0.093750 0.125000 0.406250 0.000000 0.000000 1.000000 0.000000 0.000000 0.343750 0.000000 0.656250 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGYG MEME-3 regular expression -------------------------------------------------------------------------------- GC[AG][CG][TA]G[TC]G -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF AGWGHTGG MEME-4 width = 8 sites = 26 llr = 232 E-value = 5.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:4:5::: pos.-specific C ::1:2::: probability G :a2a::aa matrix T ::3:3a:: bits 2.3 * * ** 2.0 * * ** 1.8 ** * *** 1.6 ** * *** Relative 1.4 ** * *** Entropy 1.1 ** * *** (12.9 bits) 0.9 ** * *** 0.7 ** * *** 0.5 ** * *** 0.2 ** ***** 0.0 -------- Multilevel AGAGATGG consensus T T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8289841-8289961 19 1.36e-05 AAGCTGACCT AGAGATGG TCTGACGACC chrX:5084729-5084849 19 1.36e-05 CCTGATGCTT AGAGATGG AATAACTAAA chrX:5671772-5671892 38 1.36e-05 TTCTCACGAT AGAGATGG ACCACTGTAA chr3R:5758959-5759079 77 1.36e-05 ACAATTTTGT AGAGATGG GCGTTCTATT chrX:1517618-1517738 22 1.36e-05 GCTGCTGCTT AGAGATGG GGGCGTGCAC chr2R:18421306-18421426 50 1.36e-05 TATGTGCACG AGAGATGG AATTTTTGAC chr2R:23894829-23894949 15 1.36e-05 TGGAACCGAT AGAGATGG CACTTTCGGC chr3L:8720217-8720337 16 3.75e-05 GTTTACGAGC AGTGATGG AAAACACCCT chr2L:11809335-11809455 73 3.75e-05 AGCAGTGTAT AGAGCTGG AAGAAGTATC chr3R:26725185-26725305 44 3.75e-05 CGATGTTCGA AGAGCTGG ATTTACAACG chr2L:8239821-8239941 55 3.75e-05 AACGTTAACT AGAGCTGG GGCACTATCG chrX:3739759-3739879 67 3.75e-05 CGCCTCCGGA AGTGATGG TTTTCATCTC chr2L:20918872-20918992 66 7.16e-05 TGCGGAATTT AGGGATGG GAATGCGTAG chr2R:10782845-10782965 23 7.16e-05 ATTGGAAATG AGTGCTGG TGAGAGCGAG chr3R:27273626-27273746 84 8.59e-05 GCCAGCAGCT AGTGTTGG CCAACTTCCC chr3L:13486713-13486833 46 8.59e-05 GAACAATATT AGTGTTGG TAAGGCTGAG chr3R:15263428-15263548 61 8.59e-05 ATGGTTGGCC AGTGTTGG ACACGTCACA chr2R:12757524-12757644 4 8.59e-05 AGC AGTGTTGG AAACGTCCTG chrX:801686-801806 59 8.59e-05 GTAAACTGAC AGTGTTGG TTAGCGTTCA chr3L:1376080-1376200 14 9.59e-05 CATCTACCGC AGCGATGG TCGCGTGACT chr2R:17062635-17062755 9 9.59e-05 TCTGGATT AGCGATGG TACTCACCCA chr2R:17850774-17850894 46 1.03e-04 AGCTGATGGC AGGGCTGG CAGCACTAGT chrX:13257218-13257338 104 1.03e-04 ACTACACTAG AGGGCTGG ATAACATCA chr3L:9899195-9899315 50 1.14e-04 AACCCAAGCC AGGGTTGG CTTGTGCGTT chr3R:5613110-5613230 26 1.31e-04 CTATCGAGAC AGCGTTGG TATCGATAGT chrX:6037382-6037502 104 1.41e-04 AACCGATACT AGAGGTGG AGAAACATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8289841-8289961 1.4e-05 18_[+4]_94 chrX:5084729-5084849 1.4e-05 18_[+4]_94 chrX:5671772-5671892 1.4e-05 37_[+4]_75 chr3R:5758959-5759079 1.4e-05 76_[+4]_36 chrX:1517618-1517738 1.4e-05 21_[+4]_91 chr2R:18421306-18421426 1.4e-05 49_[+4]_63 chr2R:23894829-23894949 1.4e-05 14_[+4]_98 chr3L:8720217-8720337 3.7e-05 15_[+4]_97 chr2L:11809335-11809455 3.7e-05 72_[+4]_40 chr3R:26725185-26725305 3.7e-05 43_[+4]_69 chr2L:8239821-8239941 3.7e-05 54_[+4]_58 chrX:3739759-3739879 3.7e-05 66_[+4]_46 chr2L:20918872-20918992 7.2e-05 65_[+4]_47 chr2R:10782845-10782965 7.2e-05 22_[+4]_90 chr3R:27273626-27273746 8.6e-05 83_[+4]_29 chr3L:13486713-13486833 8.6e-05 45_[+4]_67 chr3R:15263428-15263548 8.6e-05 60_[+4]_52 chr2R:12757524-12757644 8.6e-05 3_[+4]_109 chrX:801686-801806 8.6e-05 58_[+4]_54 chr3L:1376080-1376200 9.6e-05 13_[+4]_99 chr2R:17062635-17062755 9.6e-05 8_[+4]_104 chr2R:17850774-17850894 0.0001 45_[+4]_67 chrX:13257218-13257338 0.0001 103_[+4]_9 chr3L:9899195-9899315 0.00011 49_[+4]_63 chr3R:5613110-5613230 0.00013 25_[+4]_87 chrX:6037382-6037502 0.00014 103_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGWGHTGG width=8 seqs=26 chr3L:8289841-8289961 ( 19) AGAGATGG 1 chrX:5084729-5084849 ( 19) AGAGATGG 1 chrX:5671772-5671892 ( 38) AGAGATGG 1 chr3R:5758959-5759079 ( 77) AGAGATGG 1 chrX:1517618-1517738 ( 22) AGAGATGG 1 chr2R:18421306-18421426 ( 50) AGAGATGG 1 chr2R:23894829-23894949 ( 15) AGAGATGG 1 chr3L:8720217-8720337 ( 16) AGTGATGG 1 chr2L:11809335-11809455 ( 73) AGAGCTGG 1 chr3R:26725185-26725305 ( 44) AGAGCTGG 1 chr2L:8239821-8239941 ( 55) AGAGCTGG 1 chrX:3739759-3739879 ( 67) AGTGATGG 1 chr2L:20918872-20918992 ( 66) AGGGATGG 1 chr2R:10782845-10782965 ( 23) AGTGCTGG 1 chr3R:27273626-27273746 ( 84) AGTGTTGG 1 chr3L:13486713-13486833 ( 46) AGTGTTGG 1 chr3R:15263428-15263548 ( 61) AGTGTTGG 1 chr2R:12757524-12757644 ( 4) AGTGTTGG 1 chrX:801686-801806 ( 59) AGTGTTGG 1 chr3L:1376080-1376200 ( 14) AGCGATGG 1 chr2R:17062635-17062755 ( 9) AGCGATGG 1 chr2R:17850774-17850894 ( 46) AGGGCTGG 1 chrX:13257218-13257338 ( 104) AGGGCTGG 1 chr3L:9899195-9899315 ( 50) AGGGTTGG 1 chr3R:5613110-5613230 ( 26) AGCGTTGG 1 chrX:6037382-6037502 ( 104) AGAGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 5.8e+002 181 -1134 -1134 -1134 -1134 -1134 224 -1134 57 -86 -46 7 -1134 -1134 224 -1134 69 14 -245 -12 -1134 -1134 -1134 177 -1134 -1134 224 -1134 -1134 -1134 224 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 5.8e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.423077 0.115385 0.153846 0.307692 0.000000 0.000000 1.000000 0.000000 0.461538 0.230769 0.038462 0.269231 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGHTGG MEME-4 regular expression -------------------------------------------------------------------------------- AG[AT]G[ATC]TGG -------------------------------------------------------------------------------- Time 26.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCTCGC MEME-5 width = 8 sites = 2 llr = 24 E-value = 6.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a:a:a probability G a:a:::a: matrix T ::::a::: bits 2.3 **** *** 2.0 **** *** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCTCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9426445-9426565 38 5.35e-06 CCACGCAAAA GCGCTCGC AGCTTTTAGG chr2L:5944608-5944728 1 5.35e-06 . GCGctcgc tctctctctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9426445-9426565 5.4e-06 37_[+5]_75 chr2L:5944608-5944728 5.4e-06 [+5]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCTCGC width=8 seqs=2 chr2R:9426445-9426565 ( 38) GCGCTCGC 1 chr2L:5944608-5944728 ( 1) GCGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.8e+004 -765 -765 224 -765 -765 225 -765 -765 -765 -765 224 -765 -765 225 -765 -765 -765 -765 -765 176 -765 225 -765 -765 -765 -765 224 -765 -765 225 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCGC MEME-5 regular expression -------------------------------------------------------------------------------- GCGCTCGC -------------------------------------------------------------------------------- Time 32.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26859314-26859434 3.48e-02 17_[+3(4.03e-05)]_95 chr3R:17056846-17056966 1.99e-01 120 chr3R:30789591-30789711 6.66e-01 120 chrX:19146478-19146598 6.79e-01 120 chr3R:19903477-19903597 2.37e-01 35_[+3(4.03e-05)]_77 chrX:16650575-16650695 9.19e-01 120 chr3R:22150517-22150637 2.34e-01 120 chrX:15319360-15319480 1.49e-01 120 chr2L:16817799-16817919 9.95e-01 120 chr3R:26960559-26960679 8.17e-01 120 chr3R:16704387-16704507 7.92e-01 120 chr2R:23894829-23894949 2.01e-02 14_[+4(1.36e-05)]_98 chr2L:4403111-4403231 2.02e-02 40_[+3(6.92e-05)]_72 chr3R:22133807-22133927 4.70e-01 120 chr3R:17054003-17054123 2.25e-01 120 chrX:8677507-8677627 1.97e-01 120 chr3L:648240-648360 9.84e-01 120 chrX:3739759-3739879 6.28e-03 66_[+4(3.75e-05)]_46 chr3L:721132-721252 1.24e-01 120 chr3R:5016464-5016584 2.22e-01 120 chr2R:20994801-20994921 1.35e-03 3_[+1(2.61e-05)]_109 chrX:801686-801806 7.27e-03 58_[+4(8.59e-05)]_43_[+1(7.08e-05)]_\ 3 chr2R:6938653-6938773 4.24e-01 120 chr2R:12198826-12198946 4.06e-01 120 chrX:14213685-14213805 8.39e-01 120 chrX:12221690-12221810 7.45e-01 120 chr2L:5944608-5944728 7.36e-04 [+5(5.35e-06)]_112 chr2L:5972203-5972323 4.02e-01 120 chr3R:5065217-5065337 4.90e-01 120 chr2R:24186606-24186726 6.16e-03 98_[+3(4.03e-05)]_14 chrX:13370930-13371050 1.44e-01 120 chr2L:13878932-13879052 8.44e-02 120 chr3L:10858828-10858948 7.18e-01 120 chr3R:16254596-16254716 7.41e-01 120 chrX:16781199-16781319 3.62e-01 120 chr3L:199221-199341 3.44e-01 120 chrX:6339131-6339251 5.58e-01 120 chr3L:21205112-21205232 7.65e-01 120 chr2R:10013308-10013428 5.58e-01 120 chr2L:20758347-20758467 3.93e-02 48_[+2(2.32e-05)]_64 chr2R:7510145-7510265 3.87e-02 58_[+3(6.92e-05)]_54 chr2L:4292692-4292812 9.75e-02 18_[+2(5.67e-05)]_94 chr3L:1880819-1880939 2.08e-01 120 chr3R:8784925-8785045 8.20e-01 120 chrX:16547534-16547654 3.74e-02 43_[+2(9.50e-05)]_69 chr2R:13509520-13509640 3.63e-03 102_[+2(1.34e-05)]_10 chr3L:1139467-1139587 5.25e-02 38_[+2(2.32e-05)]_74 chr3L:8440888-8441008 8.75e-01 120 chr3L:13015339-13015459 1.94e-02 16_[+1(2.61e-05)]_96 chr2R:9553567-9553687 1.25e-03 28_[+3(6.92e-05)]_67_[+5(1.83e-05)]_\ 9 chr3R:15278225-15278345 8.42e-01 120 chr2R:23868654-23868774 9.77e-01 120 chr3R:5287344-5287464 7.20e-01 120 chr3R:26937656-26937776 7.33e-01 120 chrX:7703113-7703233 1.00e+00 120 chr2L:7811407-7811527 2.12e-01 120 chr2L:13833754-13833874 4.57e-01 120 chr3L:8176021-8176141 8.44e-01 120 chr3L:10866726-10866846 8.75e-01 120 chr2R:23869583-23869703 4.24e-01 120 chr3R:23927626-23927746 3.02e-02 120 chr2L:19935182-19935302 7.31e-01 120 chr2L:20890049-20890169 5.14e-01 120 chrX:16350201-16350321 3.54e-04 23_[+3(4.03e-05)]_52_[+2(1.34e-05)]_\ 29 chr3L:21349186-21349306 2.08e-01 120 chr3R:26799012-26799132 4.53e-01 120 chr2R:21713374-21713494 5.11e-01 120 chr2R:18421306-18421426 3.19e-03 49_[+4(1.36e-05)]_20_[+1(2.61e-05)]_\ 35 chr2R:10265487-10265607 4.31e-01 120 chr3R:27151583-27151703 3.24e-01 120 chr2L:19121039-19121159 8.03e-01 120 chr2L:13445586-13445706 2.85e-03 46_[+2(3.31e-05)]_66 chr2L:5055068-5055188 4.20e-01 120 chr2L:3100847-3100967 2.00e-02 62_[+3(4.03e-05)]_50 chr3R:21408484-21408604 1.61e-01 120 chr2R:14009193-14009313 5.43e-01 120 chr2R:12519057-12519177 2.94e-01 120 chr3R:10648964-10649084 9.66e-01 120 chr3L:5136226-5136346 1.77e-01 120 chr3L:630187-630307 5.94e-01 120 chr3R:11888352-11888472 9.40e-01 120 chr3L:9614072-9614192 9.59e-02 120 chr3L:15563543-15563663 5.79e-01 120 chrX:17738280-17738400 1.11e-02 45_[+1(7.08e-05)]_67 chr3R:22025418-22025538 8.54e-02 107_[+2(1.34e-05)]_5 chr3R:25881323-25881443 6.37e-01 120 chr2L:8239821-8239941 7.48e-02 54_[+4(3.75e-05)]_58 chr3R:25221512-25221632 2.64e-02 11_[+1(2.61e-05)]_85_[+1(7.08e-05)]_\ 8 chr3R:26725185-26725305 7.19e-02 43_[+4(3.75e-05)]_69 chrX:12015145-12015265 9.30e-01 120 chrX:10086347-10086467 5.04e-01 120 chr2R:22066852-22066972 2.99e-01 120 chrX:13257218-13257338 5.95e-03 120 chr2L:6956902-6957022 6.37e-03 70_[+1(2.61e-05)]_42 chr3L:12799000-12799120 1.45e-01 120 chrX:5665950-5666070 1.07e-01 51_[+1(7.08e-05)]_61 chr3L:19793535-19793655 1.59e-01 38_[+3(4.03e-05)]_74 chr3R:11198229-11198349 4.93e-01 120 chrX:19521902-19522022 7.34e-03 106_[+1(4.53e-05)]_6 chr3R:12980804-12980924 8.89e-02 [+1(7.08e-05)]_112 chr3L:10694032-10694152 8.86e-02 120 chr3L:7361341-7361461 6.47e-01 120 chrX:16103496-16103616 2.92e-01 120 chr3L:8445099-8445219 5.46e-01 120 chr3R:17072662-17072782 8.08e-04 59_[+2(1.34e-05)]_17_[+3(4.03e-05)]_\ 28 chr2R:11809519-11809639 2.77e-01 120 chr2L:6467704-6467824 4.37e-01 120 chr2L:14094770-14094890 1.92e-02 90_[+2(1.34e-05)]_22 chr2L:19140950-19141070 6.78e-01 120 chr3L:4413157-4413277 2.20e-01 120 chr2R:19127993-19128113 6.15e-01 120 chr3R:14077123-14077243 5.61e-01 120 chr3R:11372754-11372874 1.83e-02 12_[+5(1.83e-05)]_100 chr2R:12586823-12586943 2.48e-02 70_[+1(2.61e-05)]_42 chr2R:22212662-22212782 9.45e-01 120 chr2R:5967696-5967816 5.21e-02 99_[+1(4.53e-05)]_13 chrX:10600653-10600773 3.44e-01 120 chr2L:11809335-11809455 7.31e-04 72_[+4(3.75e-05)]_6_[+1(2.61e-05)]_\ 18_[+4(3.75e-05)] chr2L:10767916-10768036 7.91e-03 89_[+1(4.53e-05)]_23 chr3R:11581395-11581515 8.63e-01 120 chr3L:3165052-3165172 1.92e-01 58_[+1(7.08e-05)]_54 chr3R:21118925-21119045 7.93e-01 120 chr2L:5944810-5944930 3.46e-01 120 chr3L:7978958-7979078 4.08e-02 35_[+1(4.53e-05)]_77 chr3L:11833474-11833594 7.85e-03 107_[+1(2.61e-05)]_5 chr3R:23922270-23922390 2.72e-02 10_[+3(8.39e-05)]_9_[+3(4.03e-05)]_\ 66_[+3(6.92e-05)]_11 chr3R:28857403-28857523 8.89e-01 120 chrX:3719769-3719889 1.04e-01 120 chr2R:12757524-12757644 9.86e-03 3_[+4(8.59e-05)]_109 chr2R:17850774-17850894 1.43e-03 65_[+1(7.08e-05)]_47 chrX:1517618-1517738 1.27e-02 21_[+4(1.36e-05)]_91 chrX:6037382-6037502 8.78e-04 72_[+3(6.92e-05)]_40 chrX:10387790-10387910 6.88e-01 120 chr3R:8301479-8301599 1.07e-01 78_[+3(8.39e-05)]_34 chr3R:31669280-31669400 7.12e-02 120 chr3L:9509496-9509616 9.66e-01 120 chr3R:27239064-27239184 8.90e-02 82_[+1(2.61e-05)]_30 chrX:18404972-18405092 9.05e-01 120 chr3L:8720217-8720337 7.68e-02 15_[+4(3.75e-05)]_97 chrX:19643270-19643390 8.70e-02 43_[+2(8.51e-05)]_69 chr2R:20906654-20906774 6.45e-01 120 chrX:10184795-10184915 9.69e-01 120 chrX:1478445-1478565 5.37e-02 120 chr3L:11534136-11534256 7.79e-01 120 chr3R:9502457-9502577 3.10e-02 21_[+3(4.03e-05)]_91 chr2R:13261833-13261953 2.86e-01 103_[+2(8.51e-05)]_9 chr3R:6818749-6818869 8.46e-01 120 chr2R:12274362-12274482 1.55e-01 120 chr2L:21344472-21344592 1.55e-02 96_[+1(4.53e-05)]_16 chr3R:5758959-5759079 4.87e-02 58_[+4(3.75e-05)]_10_[+4(1.36e-05)]_\ 36 chr3R:8033108-8033228 9.30e-01 120 chr2L:18590780-18590900 7.12e-02 120 chrX:1392926-1393046 3.24e-02 37_[+2(1.34e-05)]_75 chr2L:18377241-18377361 3.06e-01 11_[+3(8.39e-05)]_101 chr2R:17564802-17564922 4.72e-02 8_[+2(8.51e-05)]_34_[+2(2.32e-05)]_\ 62 chrX:5671772-5671892 5.12e-02 37_[+4(1.36e-05)]_75 chr3L:20194850-20194970 3.35e-01 120 chrX:1880354-1880474 9.48e-01 120 chr2L:20950773-20950893 2.53e-01 120 chr2L:203659-203779 2.09e-02 87_[+1(4.53e-05)]_16_[+1(2.61e-05)]_\ 1 chrX:18635387-18635507 2.64e-01 120 chr3L:19991851-19991971 4.15e-02 120 chr3L:1463767-1463887 1.07e-02 4_[+3(6.92e-05)]_108 chr3R:29039774-29039894 4.91e-03 104_[+2(1.34e-05)]_8 chr2L:15254366-15254486 9.33e-01 120 chr2L:8541726-8541846 3.19e-01 120 chr2R:23818397-23818517 1.91e-02 71_[+2(3.31e-05)]_41 chr3L:5768990-5769110 1.00e-01 120 chr3L:18840595-18840715 1.04e-02 120 chr3L:21484079-21484199 8.16e-01 120 chr3L:18898155-18898275 7.97e-01 120 chr2R:23856913-23857033 1.64e-03 14_[+1(2.61e-05)]_98 chr2R:12025176-12025296 2.72e-01 120 chr3R:8181537-8181657 8.29e-02 120 chrX:16683887-16684007 2.72e-03 39_[+1(2.61e-05)]_73 chr2R:13897626-13897746 7.56e-01 120 chr2R:20274484-20274604 4.82e-02 39_[+3(8.39e-05)]_73 chr2R:10782845-10782965 7.79e-05 22_[+4(7.16e-05)]_19_[+3(4.03e-05)]_\ 47_[+2(2.32e-05)]_8 chr2R:17514156-17514276 1.88e-01 120 chr3L:3983496-3983616 6.87e-02 120 chr2R:18125814-18125934 9.07e-04 16_[+5(1.83e-05)]_96 chr2L:3598614-3598734 6.04e-01 120 chr3R:24010940-24011060 9.88e-01 120 chr2R:22375004-22375124 3.79e-02 44_[+1(2.61e-05)]_68 chr3R:22147627-22147747 3.63e-01 120 chr3L:6054903-6055023 7.59e-01 120 chr3L:16969792-16969912 5.87e-02 120 chr3R:5685702-5685822 1.26e-02 87_[+2(1.34e-05)]_25 chrX:15739050-15739170 9.99e-01 120 chr2L:19508730-19508850 9.52e-05 9_[+1(4.53e-05)]_28_[+3(4.03e-05)]_\ 67 chr2R:25085528-25085648 3.02e-01 120 chr2R:17590766-17590886 3.34e-01 120 chr2L:1629739-1629859 4.85e-02 66_[+2(1.34e-05)]_46 chr3L:554797-554917 3.00e-01 120 chr2L:20918872-20918992 2.71e-03 65_[+4(7.16e-05)]_17_[+1(7.08e-05)]_\ 22 chr3L:4292245-4292365 1.28e-01 18_[+2(4.29e-05)]_94 chr3L:9402384-9402504 2.06e-01 120 chr2L:16719717-16719837 7.65e-01 120 chr3L:3896801-3896921 2.68e-02 36_[+2(1.34e-05)]_76 chr3R:15263428-15263548 2.59e-03 31_[+1(2.61e-05)]_21_[+4(8.59e-05)]_\ 31_[+1(2.61e-05)]_13 chr3L:5654646-5654766 1.07e-01 120 chr2R:24174804-24174924 1.23e-03 39_[+1(2.61e-05)]_73 chr2R:21282293-21282413 7.00e-01 120 chrX:19852077-19852197 1.75e-01 120 chrX:1858951-1859071 9.45e-03 70_[+3(4.03e-05)]_42 chr2L:16275869-16275989 4.43e-01 120 chr3R:26567004-26567124 2.60e-01 120 chrX:19308150-19308270 6.76e-01 120 chrX:6741283-6741403 3.31e-02 120 chr3R:25004892-25005012 7.59e-01 120 chr2R:18829735-18829855 5.61e-02 79_[+2(5.67e-05)]_33 chr3R:15472812-15472932 8.32e-01 120 chr2R:8900193-8900313 3.08e-04 41_[+1(2.61e-05)]_71 chr2L:11203750-11203870 1.56e-01 111_[+3(8.39e-05)]_1 chr3L:9899195-9899315 8.47e-03 29_[+2(1.34e-05)]_83 chr3R:23923092-23923212 1.60e-01 30_[+1(7.08e-05)]_82 chr2R:24086550-24086670 2.05e-02 14_[+1(2.61e-05)]_10_[+1(2.61e-05)]_\ 80 chrX:19505723-19505843 1.51e-04 71_[+2(4.29e-05)]_29_[+1(2.61e-05)]_\ 4 chr2R:25011477-25011597 1.31e-02 38_[+1(4.53e-05)]_74 chr2L:5980980-5981100 7.68e-02 120 chrX:15860657-15860777 1.30e-02 120 chr2R:7525731-7525851 9.54e-01 120 chr3L:13486713-13486833 1.81e-03 45_[+4(8.59e-05)]_14_[+1(4.53e-05)]_\ 45 chrX:5639279-5639399 9.75e-01 120 chr2R:14267780-14267900 3.88e-02 120 chr3L:5789897-5790017 1.32e-01 120 chr2R:17545074-17545194 2.61e-02 26_[+2(3.31e-05)]_86 chr2R:9426445-9426565 1.53e-04 11_[+2(1.34e-05)]_18_[+5(5.35e-06)]_\ 75 chr2L:16703805-16703925 8.34e-02 75_[+3(6.92e-05)]_37 chrX:5084729-5084849 3.45e-03 18_[+4(1.36e-05)]_30_[+1(2.61e-05)]_\ 56 chr2R:17062635-17062755 1.11e-03 8_[+4(9.59e-05)]_58_[+1(4.53e-05)]_\ 38 chr3R:9677836-9677956 2.97e-03 120 chr3L:8289841-8289961 2.47e-03 18_[+4(1.36e-05)]_37_[+1(4.53e-05)]_\ 49 chrX:15892054-15892174 2.02e-02 1_[+2(8.51e-05)]_28_[+1(4.53e-05)]_\ 75 chr3L:1376080-1376200 7.97e-02 13_[+4(9.59e-05)]_99 chr2R:23383452-23383572 7.90e-02 30_[+1(7.08e-05)]_82 chr3R:20008824-20008944 8.99e-03 111_[+1(2.61e-05)]_1 chr3R:5613110-5613230 9.17e-03 33_[+1(2.61e-05)]_79 chr3R:27273626-27273746 5.67e-02 83_[+4(8.59e-05)]_29 chr3L:18791532-18791652 7.72e-01 120 chr2L:10468555-10468675 8.12e-01 120 chrX:7015084-7015204 8.32e-01 120 chr2R:21060557-21060677 8.52e-01 120 chr2R:7474281-7474401 8.42e-01 120 chrX:1890082-1890202 9.83e-01 120 chr3L:15825573-15825693 7.68e-01 120 chr2R:16170796-16170916 7.30e-01 120 chr3R:21850273-21850393 8.64e-01 120 chr3L:7360457-7360577 2.37e-02 62_[+1(2.61e-05)]_50 chrX:4366298-4366418 5.75e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************