******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/D19B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:14224356-14224476 1.0000 120 chr3L:19650248-19650368 1.0000 120 chr3R:19176238-19176358 1.0000 120 chr2R:18528022-18528142 1.0000 120 chr2L:15491042-15491162 1.0000 120 chrX:6253311-6253431 1.0000 120 chr2L:20026585-20026705 1.0000 120 chr3L:11967026-11967146 1.0000 120 chr3R:9500452-9500572 1.0000 120 chr3L:9673646-9673766 1.0000 120 chr2L:7837336-7837456 1.0000 120 chrX:600281-600401 1.0000 120 chrX:2350984-2351104 1.0000 120 chr2L:2941490-2941610 1.0000 120 chr2L:4134092-4134212 1.0000 120 chr3R:23592868-23592988 1.0000 120 chr2R:15328372-15328492 1.0000 120 chr2L:4854983-4855103 1.0000 120 chr2R:7377245-7377365 1.0000 120 chr2L:11589165-11589285 1.0000 120 chr3L:18093970-18094090 1.0000 120 chrX:11066323-11066443 1.0000 120 chrX:19174266-19174386 1.0000 120 chr3L:16728153-16728273 1.0000 120 chr3R:9002682-9002802 1.0000 120 chr2R:5308031-5308151 1.0000 120 chr2L:8420738-8420858 1.0000 120 chr2R:11429926-11430046 1.0000 120 chr2R:15282005-15282125 1.0000 120 chr3L:19188828-19188948 1.0000 120 chr3R:26906839-26906959 1.0000 120 chr3R:25375626-25375746 1.0000 120 chr2R:14959806-14959926 1.0000 120 chr2R:14054465-14054585 1.0000 120 chr3R:30286504-30286624 1.0000 120 chrX:1974062-1974182 1.0000 120 chr3R:4602006-4602126 1.0000 120 chr3R:13782167-13782287 1.0000 120 chr2R:8814713-8814833 1.0000 120 chrX:18920461-18920581 1.0000 120 chr3R:30744050-30744170 1.0000 120 chr2L:2616051-2616171 1.0000 120 chr3R:30214780-30214900 1.0000 120 chrX:11875263-11875383 1.0000 120 chr3R:12186593-12186713 1.0000 120 chr3L:21390565-21390685 1.0000 120 chrX:10599607-10599727 1.0000 120 chrX:10484379-10484499 1.0000 120 chr2R:11678913-11679033 1.0000 120 chrX:6874362-6874482 1.0000 120 chrX:15300365-15300485 1.0000 120 chr2L:4422305-4422425 1.0000 120 chrX:11383688-11383808 1.0000 120 chr3L:20869201-20869321 1.0000 120 chrX:437524-437644 1.0000 120 chr2R:22313108-22313228 1.0000 120 chr3L:9846704-9846824 1.0000 120 chr2R:13005428-13005548 1.0000 120 chr2L:500800-500920 1.0000 120 chr2L:5778307-5778427 1.0000 120 chr2L:6239427-6239547 1.0000 120 chr2R:6129787-6129907 1.0000 120 chr3R:4128480-4128600 1.0000 120 chr3R:23871894-23872014 1.0000 120 chr2L:10683061-10683181 1.0000 120 chr2R:23815664-23815784 1.0000 120 chr3R:22496892-22497012 1.0000 120 chr3R:6644569-6644689 1.0000 120 chr3R:11809307-11809427 1.0000 120 chrX:8200409-8200529 1.0000 120 chr3R:7793590-7793710 1.0000 120 chr2R:12813533-12813653 1.0000 120 chr2L:12904084-12904204 1.0000 120 chr3L:6315853-6315973 1.0000 120 chr2R:23069205-23069325 1.0000 120 chr2R:16576265-16576385 1.0000 120 chr2R:10788568-10788688 1.0000 120 chr2R:6948014-6948134 1.0000 120 chrX:7693529-7693649 1.0000 120 chr2R:22357790-22357910 1.0000 120 chr2R:8452223-8452343 1.0000 120 chr3R:21253698-21253818 1.0000 120 chr2R:22313307-22313427 1.0000 120 chr3R:15611828-15611948 1.0000 120 chr2R:13499104-13499224 1.0000 120 chr2R:13956418-13956538 1.0000 120 chr3R:24099706-24099826 1.0000 120 chr2L:433466-433586 1.0000 120 chrX:15841520-15841640 1.0000 120 chr3L:12720888-12721008 1.0000 120 chr3R:5193426-5193546 1.0000 120 chrX:7715461-7715581 1.0000 120 chrX:18140106-18140226 1.0000 120 chr2R:9930446-9930566 1.0000 120 chrX:7432839-7432959 1.0000 120 chr2L:3085472-3085592 1.0000 120 chrX:14861749-14861869 1.0000 120 chr3R:30450806-30450926 1.0000 120 chr2L:10323220-10323340 1.0000 120 chr4:54773-54893 1.0000 120 chr3R:31019845-31019965 1.0000 120 chr2R:8190077-8190197 1.0000 120 chr2L:13970119-13970239 1.0000 120 chrX:3352990-3353110 1.0000 120 chr2L:1299552-1299672 1.0000 120 chr3L:4526260-4526380 1.0000 120 chr2R:22386671-22386791 1.0000 120 chrX:5919449-5919569 1.0000 120 chr2L:4218951-4219071 1.0000 120 chrX:22486612-22486732 1.0000 120 chr2R:11186157-11186277 1.0000 120 chr2R:9555580-9555700 1.0000 120 chr2L:19855414-19855534 1.0000 120 chr2L:1907246-1907366 1.0000 120 chr3R:14329720-14329840 1.0000 120 chr2L:5027812-5027932 1.0000 120 chrX:19167737-19167857 1.0000 120 chr3R:9970634-9970754 1.0000 120 chr2L:1093180-1093300 1.0000 120 chr2R:15364309-15364429 1.0000 120 chrX:20423342-20423462 1.0000 120 chrX:9532014-9532134 1.0000 120 chrX:15818765-15818885 1.0000 120 chrX:18341096-18341216 1.0000 120 chr2L:11593313-11593433 1.0000 120 chr3R:24138602-24138722 1.0000 120 chr2L:3706268-3706388 1.0000 120 chrX:17093726-17093846 1.0000 120 chr2L:19097145-19097265 1.0000 120 chr2L:16258418-16258538 1.0000 120 chr3L:8461341-8461461 1.0000 120 chrX:19055364-19055484 1.0000 120 chr3L:1152811-1152931 1.0000 120 chr3R:10683334-10683454 1.0000 120 chr3R:25694315-25694435 1.0000 120 chr2L:5804585-5804705 1.0000 120 chr3L:14322317-14322437 1.0000 120 chr2R:15790209-15790329 1.0000 120 chr2L:20384822-20384942 1.0000 120 chr3R:25320627-25320747 1.0000 120 chr2R:23617143-23617263 1.0000 120 chr2L:7492646-7492766 1.0000 120 chr3R:20818979-20819099 1.0000 120 chr2R:22591020-22591140 1.0000 120 chrX:4875151-4875271 1.0000 120 chr2L:20351847-20351967 1.0000 120 chr3L:19959243-19959363 1.0000 120 chr2R:24230261-24230381 1.0000 120 chr3R:17147970-17148090 1.0000 120 chr3L:22944651-22944771 1.0000 120 chr2R:6241400-6241520 1.0000 120 chr2L:13970325-13970445 1.0000 120 chrX:3635042-3635162 1.0000 120 chr2R:13839650-13839770 1.0000 120 chr2L:2439011-2439131 1.0000 120 chr2L:12028261-12028381 1.0000 120 chr3R:30801797-30801917 1.0000 120 chr2L:3524880-3525000 1.0000 120 chr2L:1902665-1902785 1.0000 120 chr2L:122460-122580 1.0000 120 chr2L:14993248-14993368 1.0000 120 chr2R:13920599-13920719 1.0000 120 chr2L:14843734-14843854 1.0000 120 chr3L:18419551-18419671 1.0000 120 chr2L:11974494-11974614 1.0000 120 chr3L:16881199-16881319 1.0000 120 chrX:14784297-14784417 1.0000 120 chrX:921510-921630 1.0000 120 chr2R:6172360-6172480 1.0000 120 chr3R:27159953-27160073 1.0000 120 chr2R:19640478-19640598 1.0000 120 chrX:9121557-9121677 1.0000 120 chr3R:29907762-29907882 1.0000 120 chr3L:14322516-14322636 1.0000 120 chrX:19046024-19046144 1.0000 120 chr2L:8698340-8698460 1.0000 120 chrX:19959712-19959832 1.0000 120 chrX:16837915-16838035 1.0000 120 chr3R:20265402-20265522 1.0000 120 chr3R:9351210-9351330 1.0000 120 chr3L:3124311-3124431 1.0000 120 chr3L:7344389-7344509 1.0000 120 chr2L:8990246-8990366 1.0000 120 chr3R:6388414-6388534 1.0000 120 chr2L:18811513-18811633 1.0000 120 chr3R:23657498-23657618 1.0000 120 chr2L:893340-893460 1.0000 120 chrX:11144739-11144859 1.0000 120 chrX:8883536-8883656 1.0000 120 chrX:1260493-1260613 1.0000 120 chr3L:16371197-16371317 1.0000 120 chrX:18276686-18276806 1.0000 120 chr3L:16158522-16158642 1.0000 120 chr3R:6644769-6644889 1.0000 120 chr3R:20263382-20263502 1.0000 120 chr3L:12184106-12184226 1.0000 120 chrX:2464299-2464419 1.0000 120 chr2L:10147422-10147542 1.0000 120 chr2R:23395768-23395888 1.0000 120 chr2R:15326408-15326528 1.0000 120 chr3R:30531490-30531610 1.0000 120 chrX:14764223-14764343 1.0000 120 chrX:8890005-8890125 1.0000 120 chr2L:5289475-5289595 1.0000 120 chr2R:9874421-9874541 1.0000 120 chr3L:1629534-1629654 1.0000 120 chr3L:20197188-20197308 1.0000 120 chr2L:18659878-18659998 1.0000 120 chr3L:18969040-18969160 1.0000 120 chr2R:15326608-15326728 1.0000 120 chr3L:17313338-17313458 1.0000 120 chr2L:9334029-9334149 1.0000 120 chr3R:31224122-31224242 1.0000 120 chr2L:20240654-20240774 1.0000 120 chrX:2744706-2744826 1.0000 120 chr3L:17003287-17003407 1.0000 120 chr3L:1000961-1001081 1.0000 120 chrX:7477235-7477355 1.0000 120 chr3R:14064042-14064162 1.0000 120 chr2R:9420853-9420973 1.0000 120 chr3R:20593948-20594068 1.0000 120 chr3R:14626067-14626187 1.0000 120 chr3L:21266227-21266347 1.0000 120 chrX:699770-699890 1.0000 120 chr3L:11974028-11974148 1.0000 120 chr2L:8255522-8255642 1.0000 120 chr3L:8699168-8699288 1.0000 120 chrX:11559786-11559906 1.0000 120 chr3L:15116890-15117010 1.0000 120 chrX:1170381-1170501 1.0000 120 chr2L:2039286-2039406 1.0000 120 chr3L:7018692-7018812 1.0000 120 chr3R:30809700-30809820 1.0000 120 chr3L:11801748-11801868 1.0000 120 chr2R:11606589-11606709 1.0000 120 chr3R:20549378-20549498 1.0000 120 chr2R:22411239-22411359 1.0000 120 chrX:19785043-19785163 1.0000 120 chr2R:18606705-18606825 1.0000 120 chrX:2198994-2199114 1.0000 120 chr3L:9432368-9432488 1.0000 120 chr2L:5781296-5781416 1.0000 120 chr3L:17915928-17916048 1.0000 120 chr2L:18811314-18811434 1.0000 120 chr3R:24100847-24100967 1.0000 120 chr3R:14624793-14624913 1.0000 120 chr2R:16579988-16580108 1.0000 120 chrX:5467449-5467569 1.0000 120 chr2R:14493407-14493527 1.0000 120 chrX:19167445-19167565 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_D19B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/D19B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.327 C 0.176 G 0.173 T 0.324 Background letter frequencies (from file dataset with add-one prior applied): A 0.327 C 0.176 G 0.173 T 0.324 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TACCCTKT MEME-1 width = 8 sites = 77 llr = 644 E-value = 5.7e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::21: pos.-specific C ::aaa112 probability G :::::151 matrix T a::::647 bits 2.5 *** 2.3 *** 2.0 *** 1.8 *** Relative 1.5 ***** Entropy 1.3 ***** (12.1 bits) 1.0 ***** 0.8 ***** * 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel TACCCTGT consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22411239-22411359 24 1.05e-05 ACCATTAAAA TACCCTGT AAAAGGGCCA chr3L:15116890-15117010 80 1.05e-05 GTAATATTCA TACCCTGT AATATTAATT chrX:7477235-7477355 1 1.05e-05 . TACCCTGT ACTCACTGAG chr2L:9334029-9334149 46 1.05e-05 GCTGTTTTGC TACCCTGT AATAAATTAA chr2R:15326608-15326728 51 1.05e-05 AAAATACGAT TACCCTGT AAAAAATTCA chrX:1260493-1260613 80 1.05e-05 AAAACGCATA TACCCTGT GCTACCTGCC chr3L:16881199-16881319 37 1.05e-05 CGGATTTTAG TACCCTGT AGCGGTTTTT chr3R:25320627-25320747 35 1.05e-05 TTTGTTTTGC TACCCTGT TCACATGCCT chr3R:25694315-25694435 5 1.05e-05 GATA TACCCTGT ACTCAATGTT chr3R:10683334-10683454 33 1.05e-05 CCAATTTGAA TACCCTGT AATTAAGTGA chrX:19055364-19055484 29 1.05e-05 AATGACGGGA TACCCTGT AAAAATTAAA chr2R:9930446-9930566 15 1.05e-05 ATATACTCGA TACCCTGT TACAAAAGAT chr2L:433466-433586 89 1.05e-05 TAACCCAAGA TACCCTGT ATGGACTGCT chr3L:19188828-19188948 7 1.05e-05 ATCGGA TACCCTGT GCTGTGTGTA chr3R:9002682-9002802 56 1.05e-05 GATCCAATGA TACCCTGT AAGTGCTATA chr3R:23592868-23592988 19 1.05e-05 CGAATATTAC TACCCTGT TAACTTTGAA chr3R:9500452-9500572 57 1.05e-05 ACCCCCCTGC TACCCTGT ACAATGCCGC chr3R:19176238-19176358 43 1.05e-05 CCAACGAGCA TACCCTGT ACGAAAATAT chr2L:20240654-20240774 83 1.62e-05 ACCCATGTTA TACCCTGC GCTAAAACAC chr3R:31224122-31224242 21 1.62e-05 CTCGATTTGA TACCCTGC AGTTTCATTC chr3R:30801797-30801917 46 1.62e-05 AAGTGCATGA TACCCTGC AGGAGGGAAT chrX:7693529-7693649 43 1.62e-05 CGCCCGTTGA TACCCTGC AAATTATGCA chr2L:4422305-4422425 41 1.62e-05 GGACCTAATA TACCCTGC TCTTTCTTCA chr2R:15282005-15282125 71 1.62e-05 ACACCCACTC TACCCTGC AATCCCGATA chr2L:4134092-4134212 14 1.62e-05 ACTATTGAAA TACCCTGC ATAATCAAGG chr3L:21266227-21266347 30 2.19e-05 GACCTAGCAA TACCCCGT TCTGCGGAAA chrX:6253311-6253431 17 2.19e-05 AGATTACAGA TACCCCGT TTAGTTACAA chr2R:16579988-16580108 113 3.25e-05 ACTCTCTTTC TACCCAGT chr2L:2039286-2039406 19 3.25e-05 ATAAACTGTT TACCCAGT TTGGTCATGA chr2L:6239427-6239547 10 3.25e-05 ACTGTAGCT TACCCAGT AGAGTGCTTT chrX:19167445-19167565 100 5.21e-05 TATACTCTTA TACCCTTT GCCACAGAAT chr3R:7793590-7793710 37 5.21e-05 ACTGTCAAGA TACCCTTT GGTTGCTACG chrX:8200409-8200529 15 5.21e-05 ACATATTGTA TACCCTTT ATTTATTTTC chr3R:30809700-30809820 58 5.77e-05 TCGAATCTAA TACCCTGG ATATACGTCT chrX:18276686-18276806 71 5.77e-05 TAGTTGCTAG TACCCTGG GTACAGGGTA chr2L:1093180-1093300 23 5.77e-05 GACTACCAGA TACCCTGG ACTGGGAGAT chrX:18140106-18140226 5 5.77e-05 GAGA TACCCTGG ACAGACGAAC chrX:11875263-11875383 7 6.08e-05 TTGGGA TACCCCGC AATTCACAGT chr3L:17915928-17916048 93 8.28e-05 ACTTATTATG TACCCTTC AATCCATCGG chr3L:17313338-17313458 9 9.35e-05 ACTGTAAA TACCCCTT ATCGAGATGG chr3L:19959243-19959363 110 9.35e-05 ATATGTAACA TACCCCTT TTT chr3R:24138602-24138722 22 9.35e-05 gaccatcaga tacccctt agtcacctTA chrX:11383688-11383808 2 9.35e-05 A TACCCCTT CTATAGGGTA chrX:2350984-2351104 11 9.35e-05 AACGAATTGA TACCCCTT ACCAAGCTTG chr2R:18606705-18606825 77 1.24e-04 GACTATTCGA TACCCATT ACTGGGATAG chr2R:9420853-9420973 66 1.24e-04 gactaacaga tacccatt actcagctag chrX:14764223-14764343 44 1.24e-04 GACTATCAGG TACCCATT ACGTTCAGTC chr3L:16158522-16158642 57 1.24e-04 CACTATACCA TACCCTCT ACTGACCACA chrX:11144739-11144859 38 1.24e-04 ATATATGTGC TACCCATT CAATTACAGG chr2L:8990246-8990366 99 1.24e-04 TTATTCTGCA TACCCATT TCATCAAATT chr3L:3124311-3124431 45 1.24e-04 GAATTCAATA TACCCATT GTCGTCAGTA chrX:9121557-9121677 51 1.24e-04 GCACCACTGC TACCCTCT AATTTCTCAC chrX:9532014-9532134 10 1.24e-04 CCATATAGT TACCCATT AAGATTAAAG chr3R:4128480-4128600 82 1.24e-04 gactatcaga tacccatt actcagctgg chr3L:9846704-9846824 68 1.24e-04 GGCTATCAAA TACCCATT TCAAATCTGC chrX:437524-437644 90 1.24e-04 TAGATTCCTA TACCCATT AATTTTTAGA chr2L:2616051-2616171 85 1.24e-04 TAGTATTTCA TACCCATT ACTTTTAGTG chr3L:11967026-11967146 2 1.24e-04 G TACCCATT ACTTATTTTA chrX:11066323-11066443 11 1.53e-04 GACCAAGGGA TACCCTAT GATTTTAGAT chr2L:5289475-5289595 61 1.72e-04 CACTATGTGA TACCCCTC GTAGGTGAAT chr2R:9874421-9874541 48 1.99e-04 gactattgga tacccgtt actcagctag chr2R:6172360-6172480 59 1.99e-04 gaatatcaga tacccgtt acccaactag chr3L:22944651-22944771 53 1.99e-04 gactatcaga tacccgtt actcagcGAA chr4:54773-54893 62 1.99e-04 gactatcaga tacccgtt actcagctag chr3R:30744050-30744170 31 1.99e-04 GACTATAGGA TACCCATC AAGAACATTT chr2L:10323220-10323340 68 2.29e-04 CCAAACTGAA TACCCTAC TCCCAGAAAT chr2R:22313108-22313228 23 2.29e-04 GACTGGTGTA TACCCTAC AAATATTCTA chr2R:14959806-14959926 32 2.29e-04 ACAGAAAAGC TACCCACT ACCAGGCAAT chr2R:13499104-13499224 49 2.40e-04 AACTTGTAAT TACCCCAT GAATGTCTCA chr3L:9432368-9432488 12 2.82e-04 GACCAGCGCA TACCCTCG TCGCAAACAT chr3R:11809307-11809427 24 2.82e-04 AACTTAATTA TACCCTCG CGAAAAATCT chr3R:24100847-24100967 93 3.01e-04 ATGCCCCACG TACCCTAG CGATAACAAA chr2L:20351847-20351967 45 3.01e-04 AATAAATAGC TACCCTAG AAAATATTAT chr2L:3085472-3085592 84 3.01e-04 AAATGTGCAA TACCCTAG GCAGTTATGA chr2R:18528022-18528142 103 3.13e-04 CGAACCAATA TACCCACC TTTTCTAAAT chr3R:9351210-9351330 83 3.19e-04 GAATATATGA TACCCCAC AGCGATACCC chrX:6874362-6874482 95 3.40e-04 TACACGGTAC TACCCGAT CGATTAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22411239-22411359 1e-05 23_[+1]_89 chr3L:15116890-15117010 1e-05 79_[+1]_33 chrX:7477235-7477355 1e-05 [+1]_112 chr2L:9334029-9334149 1e-05 45_[+1]_67 chr2R:15326608-15326728 1e-05 50_[+1]_62 chrX:1260493-1260613 1e-05 79_[+1]_33 chr3L:16881199-16881319 1e-05 36_[+1]_76 chr3R:25320627-25320747 1e-05 34_[+1]_78 chr3R:25694315-25694435 1e-05 4_[+1]_108 chr3R:10683334-10683454 1e-05 32_[+1]_80 chrX:19055364-19055484 1e-05 28_[+1]_84 chr2R:9930446-9930566 1e-05 14_[+1]_98 chr2L:433466-433586 1e-05 88_[+1]_24 chr3L:19188828-19188948 1e-05 6_[+1]_106 chr3R:9002682-9002802 1e-05 55_[+1]_57 chr3R:23592868-23592988 1e-05 18_[+1]_94 chr3R:9500452-9500572 1e-05 56_[+1]_56 chr3R:19176238-19176358 1e-05 42_[+1]_70 chr2L:20240654-20240774 1.6e-05 82_[+1]_30 chr3R:31224122-31224242 1.6e-05 20_[+1]_92 chr3R:30801797-30801917 1.6e-05 45_[+1]_67 chrX:7693529-7693649 1.6e-05 42_[+1]_70 chr2L:4422305-4422425 1.6e-05 40_[+1]_72 chr2R:15282005-15282125 1.6e-05 70_[+1]_42 chr2L:4134092-4134212 1.6e-05 13_[+1]_99 chr3L:21266227-21266347 2.2e-05 29_[+1]_83 chrX:6253311-6253431 2.2e-05 16_[+1]_96 chr2R:16579988-16580108 3.2e-05 112_[+1] chr2L:2039286-2039406 3.2e-05 18_[+1]_94 chr2L:6239427-6239547 3.2e-05 9_[+1]_103 chrX:19167445-19167565 5.2e-05 99_[+1]_13 chr3R:7793590-7793710 5.2e-05 36_[+1]_76 chrX:8200409-8200529 5.2e-05 14_[+1]_98 chr3R:30809700-30809820 5.8e-05 57_[+1]_55 chrX:18276686-18276806 5.8e-05 70_[+1]_42 chr2L:1093180-1093300 5.8e-05 22_[+1]_90 chrX:18140106-18140226 5.8e-05 4_[+1]_108 chrX:11875263-11875383 6.1e-05 6_[+1]_106 chr3L:17915928-17916048 8.3e-05 92_[+1]_20 chr3L:17313338-17313458 9.4e-05 8_[+1]_104 chr3L:19959243-19959363 9.4e-05 109_[+1]_3 chr3R:24138602-24138722 9.4e-05 21_[+1]_91 chrX:11383688-11383808 9.4e-05 1_[+1]_111 chrX:2350984-2351104 9.4e-05 10_[+1]_102 chr2R:18606705-18606825 0.00012 76_[+1]_36 chr2R:9420853-9420973 0.00012 65_[+1]_47 chrX:14764223-14764343 0.00012 43_[+1]_69 chr3L:16158522-16158642 0.00012 56_[+1]_56 chrX:11144739-11144859 0.00012 37_[+1]_75 chr2L:8990246-8990366 0.00012 98_[+1]_14 chr3L:3124311-3124431 0.00012 44_[+1]_68 chrX:9121557-9121677 0.00012 50_[+1]_62 chrX:9532014-9532134 0.00012 9_[+1]_103 chr3R:4128480-4128600 0.00012 81_[+1]_31 chr3L:9846704-9846824 0.00012 67_[+1]_45 chrX:437524-437644 0.00012 89_[+1]_23 chr2L:2616051-2616171 0.00012 84_[+1]_28 chr3L:11967026-11967146 0.00012 1_[+1]_111 chrX:11066323-11066443 0.00015 10_[+1]_102 chr2L:5289475-5289595 0.00017 60_[+1]_52 chr2R:9874421-9874541 0.0002 47_[+1]_65 chr2R:6172360-6172480 0.0002 58_[+1]_54 chr3L:22944651-22944771 0.0002 52_[+1]_60 chr4:54773-54893 0.0002 61_[+1]_51 chr3R:30744050-30744170 0.0002 30_[+1]_82 chr2L:10323220-10323340 0.00023 67_[+1]_45 chr2R:22313108-22313228 0.00023 22_[+1]_90 chr2R:14959806-14959926 0.00023 31_[+1]_81 chr2R:13499104-13499224 0.00024 48_[+1]_64 chr3L:9432368-9432488 0.00028 11_[+1]_101 chr3R:11809307-11809427 0.00028 23_[+1]_89 chr3R:24100847-24100967 0.0003 92_[+1]_20 chr2L:20351847-20351967 0.0003 44_[+1]_68 chr2L:3085472-3085592 0.0003 83_[+1]_29 chr2R:18528022-18528142 0.00031 102_[+1]_10 chr3R:9351210-9351330 0.00032 82_[+1]_30 chrX:6874362-6874482 0.00034 94_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACCCTKT width=8 seqs=77 chr2R:22411239-22411359 ( 24) TACCCTGT 1 chr3L:15116890-15117010 ( 80) TACCCTGT 1 chrX:7477235-7477355 ( 1) TACCCTGT 1 chr2L:9334029-9334149 ( 46) TACCCTGT 1 chr2R:15326608-15326728 ( 51) TACCCTGT 1 chrX:1260493-1260613 ( 80) TACCCTGT 1 chr3L:16881199-16881319 ( 37) TACCCTGT 1 chr3R:25320627-25320747 ( 35) TACCCTGT 1 chr3R:25694315-25694435 ( 5) TACCCTGT 1 chr3R:10683334-10683454 ( 33) TACCCTGT 1 chrX:19055364-19055484 ( 29) TACCCTGT 1 chr2R:9930446-9930566 ( 15) TACCCTGT 1 chr2L:433466-433586 ( 89) TACCCTGT 1 chr3L:19188828-19188948 ( 7) TACCCTGT 1 chr3R:9002682-9002802 ( 56) TACCCTGT 1 chr3R:23592868-23592988 ( 19) TACCCTGT 1 chr3R:9500452-9500572 ( 57) TACCCTGT 1 chr3R:19176238-19176358 ( 43) TACCCTGT 1 chr2L:20240654-20240774 ( 83) TACCCTGC 1 chr3R:31224122-31224242 ( 21) TACCCTGC 1 chr3R:30801797-30801917 ( 46) TACCCTGC 1 chrX:7693529-7693649 ( 43) TACCCTGC 1 chr2L:4422305-4422425 ( 41) TACCCTGC 1 chr2R:15282005-15282125 ( 71) TACCCTGC 1 chr2L:4134092-4134212 ( 14) TACCCTGC 1 chr3L:21266227-21266347 ( 30) TACCCCGT 1 chrX:6253311-6253431 ( 17) TACCCCGT 1 chr2R:16579988-16580108 ( 113) TACCCAGT 1 chr2L:2039286-2039406 ( 19) TACCCAGT 1 chr2L:6239427-6239547 ( 10) TACCCAGT 1 chrX:19167445-19167565 ( 100) TACCCTTT 1 chr3R:7793590-7793710 ( 37) TACCCTTT 1 chrX:8200409-8200529 ( 15) TACCCTTT 1 chr3R:30809700-30809820 ( 58) TACCCTGG 1 chrX:18276686-18276806 ( 71) TACCCTGG 1 chr2L:1093180-1093300 ( 23) TACCCTGG 1 chrX:18140106-18140226 ( 5) TACCCTGG 1 chrX:11875263-11875383 ( 7) TACCCCGC 1 chr3L:17915928-17916048 ( 93) TACCCTTC 1 chr3L:17313338-17313458 ( 9) TACCCCTT 1 chr3L:19959243-19959363 ( 110) TACCCCTT 1 chr3R:24138602-24138722 ( 22) TACCCCTT 1 chrX:11383688-11383808 ( 2) TACCCCTT 1 chrX:2350984-2351104 ( 11) TACCCCTT 1 chr2R:18606705-18606825 ( 77) TACCCATT 1 chr2R:9420853-9420973 ( 66) TACCCATT 1 chrX:14764223-14764343 ( 44) TACCCATT 1 chr3L:16158522-16158642 ( 57) TACCCTCT 1 chrX:11144739-11144859 ( 38) TACCCATT 1 chr2L:8990246-8990366 ( 99) TACCCATT 1 chr3L:3124311-3124431 ( 45) TACCCATT 1 chrX:9121557-9121677 ( 51) TACCCTCT 1 chrX:9532014-9532134 ( 10) TACCCATT 1 chr3R:4128480-4128600 ( 82) TACCCATT 1 chr3L:9846704-9846824 ( 68) TACCCATT 1 chrX:437524-437644 ( 90) TACCCATT 1 chr2L:2616051-2616171 ( 85) TACCCATT 1 chr3L:11967026-11967146 ( 2) TACCCATT 1 chrX:11066323-11066443 ( 11) TACCCTAT 1 chr2L:5289475-5289595 ( 61) TACCCCTC 1 chr2R:9874421-9874541 ( 48) TACCCGTT 1 chr2R:6172360-6172480 ( 59) TACCCGTT 1 chr3L:22944651-22944771 ( 53) TACCCGTT 1 chr4:54773-54893 ( 62) TACCCGTT 1 chr3R:30744050-30744170 ( 31) TACCCATC 1 chr2L:10323220-10323340 ( 68) TACCCTAC 1 chr2R:22313108-22313228 ( 23) TACCCTAC 1 chr2R:14959806-14959926 ( 32) TACCCACT 1 chr2R:13499104-13499224 ( 49) TACCCCAT 1 chr3L:9432368-9432488 ( 12) TACCCTCG 1 chr3R:11809307-11809427 ( 24) TACCCTCG 1 chr3R:24100847-24100967 ( 93) TACCCTAG 1 chr2L:20351847-20351967 ( 45) TACCCTAG 1 chr2L:3085472-3085592 ( 84) TACCCTAG 1 chr2R:18528022-18528142 ( 103) TACCCACC 1 chr3R:9351210-9351330 ( 83) TACCCCAC 1 chrX:6874362-6874482 ( 95) TACCCGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9669 E= 5.7e-037 -1291 -1291 -1291 162 161 -1291 -1291 -1291 -1291 251 -1291 -1291 -1291 251 -1291 -1291 -1291 251 -1291 -1291 -48 -30 -141 78 -148 -117 139 11 -1291 15 -56 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 5.7e-037 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.233766 0.142857 0.064935 0.558442 0.116883 0.077922 0.454545 0.350649 0.000000 0.194805 0.116883 0.688312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACCCTKT MEME-1 regular expression -------------------------------------------------------------------------------- TACCC[TA][GT]T -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTATCH MEME-2 width = 8 sites = 49 llr = 436 E-value = 6.9e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a:13 pos.-specific C ::::::53 probability G aaa::12: matrix T :::a:914 bits 2.5 *** 2.3 *** 2.0 *** 1.8 *** Relative 1.5 ***** Entropy 1.3 ****** (12.8 bits) 1.0 ****** 0.8 ****** 0.5 ******* 0.3 ******** 0.0 -------- Multilevel GGGTATCT consensus GC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22357790-22357910 109 5.51e-06 Tctgattaac gggtatcc aata chr3L:17915928-17916048 51 1.56e-05 gcaaagtaat gggtatct gatagtcgag chrX:19959712-19959832 63 1.56e-05 TGCAGGTAAT GGGTATCT TTTAGTCGAC chrX:14784297-14784417 96 1.56e-05 TTTATTtaac gggtatct gatagtcgag chr2R:6241400-6241520 20 1.56e-05 gctgagtaac gggtatct gatagtcgag chrX:22486612-22486732 85 1.56e-05 gctgagtaac gggtatct gatagccgac chrX:15841520-15841640 76 1.56e-05 gctgagtaat gggtatct gatagtcggg chr2R:11678913-11679033 22 1.56e-05 ACAgagtaac gggtatct gatagttgag chr2R:5308031-5308151 74 1.56e-05 ATCTTgtaag gggtatct ggtagtcgag chr2L:4854983-4855103 71 1.56e-05 AGTAAATACA GGGTATCT TGCATTTGCA chr2R:15328372-15328492 25 1.56e-05 ATCGATTGGG GGGTATCT TGCTTTTGAA chr3L:19650248-19650368 55 1.56e-05 GGTGTGTAAG GGGTATCT GATAGTCGAG chr2R:14493407-14493527 72 2.59e-05 CCATCTTACA GGGTATCA GCACAGCAAA chr3R:14626067-14626187 66 2.59e-05 ATAACATCCA GGGTATCA CCAAGCCTGC chrX:2744706-2744826 19 2.59e-05 TGCATTTACA GGGTATCA GCGGGTCGCA chr3L:18419551-18419671 76 2.59e-05 TGGCTTTCAA GGGTATCA AACAGTTCGT chr2L:122460-122580 86 2.59e-05 AAAAAATAAT GGGTATCA TAATCTCAAA chr2L:12028261-12028381 61 2.59e-05 ATAAAGAACA GGGTATCA TATGTTCGAT chr3R:31019845-31019965 60 2.59e-05 TCTTTTTAAC GGGTATCA ATTCTTCGAT chr3R:19176238-19176358 99 2.59e-05 TAATCCTAGA GGGTATCA ATAAATGCAG chrX:19785043-19785163 108 3.13e-05 TCTTTCGAAT GGGTATGC TTTTT chr3L:20197188-20197308 88 3.13e-05 GCTTACTGCA GGGTATGC AATGTCGGAA chrX:11144739-11144859 54 3.13e-05 TTCAATTACA GGGTATGC GATAACTATA chr2R:16576265-16576385 36 3.13e-05 CATCTTTGCT GGGTAtgc gttagtcgag chr3R:6644569-6644689 17 3.13e-05 gaagagtaca gggtatgc taggtgcttt chr3R:20593948-20594068 95 4.12e-05 GCCGAGAAAA GGGTATGT TGCTAGTCCG chr2L:13970119-13970239 96 4.12e-05 AGTATCTTTT GGGTATGT AAATTAGCAT chrX:11383688-11383808 15 4.12e-05 CCCTTCTATA GGGTATGT TTTAAATACC chr3R:30450806-30450926 95 4.42e-05 ATTGAGTACC GGGTAGCC GATAGTCGAA chr3L:14322516-14322636 61 5.97e-05 AACGATTACA GGGTATGA TAGGTGCGAC chrX:19167445-19167565 87 8.00e-05 ACATGCTATG GGGTATAC TCTTATACCC chrX:19046024-19046144 103 8.00e-05 ACAGGGTATA GGGTATAC TAAGCTTCGT chr2R:9555580-9555700 63 8.00e-05 TGTGATTAAT GGGTATTC TTGCGGTTGG chrX:5919449-5919569 79 8.00e-05 AAAAACTTTT GGGTATTC CCACAGTCGA chr3L:21390565-21390685 49 8.00e-05 AACGAATAAT GGGTATAC GATAGTTGCG chr2L:2941490-2941610 99 8.00e-05 ATAAAGTAAG GGGTATTC CAGGCTTCGA chrX:5467449-5467569 101 1.23e-04 TATCCTTAGA GGGTATTT GCCAGTCCAT chr3R:31224122-31224242 98 1.23e-04 TGGAACTACA GGGTATAT GTATGTACAT chr2L:19097145-19097265 63 1.23e-04 CACAACTAGT GGGTATAT TAAAGTCGAG chr2L:3706268-3706388 31 1.23e-04 ATACGTTCCA GGGTAGCA CAGGAATATA chrX:9532014-9532134 89 1.23e-04 TTTTTGTAAT GGGTATTT CGTGGTTCAT chr2L:1907246-1907366 55 1.23e-04 ACGAATTACA GGGTATTT GGGGCCAATC chr2R:23815664-23815784 29 1.23e-04 CTCAGATACA GGGTAGCA TATAGTAGGG chr3R:23871894-23872014 57 1.23e-04 CCATATTCCA GGGTATTT GCATGTGCAG chr2R:15282005-15282125 110 1.23e-04 AAGGGCCACT GGGTAGCA CAA chr2L:8420738-8420858 3 1.23e-04 GG GGGTATAT TATGGTGCCG chr3L:18969040-18969160 65 1.26e-04 TTAACCAGTG GGGTAGGC TTAGATTTAT chr3R:27159953-27160073 33 1.26e-04 TATTACTATT GGGTAGGC GAATAAATTC chr2L:18811513-18811633 103 1.69e-04 GGTATTACCA GGGTATAA AACACCCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22357790-22357910 5.5e-06 108_[+2]_4 chr3L:17915928-17916048 1.6e-05 50_[+2]_62 chrX:19959712-19959832 1.6e-05 62_[+2]_50 chrX:14784297-14784417 1.6e-05 95_[+2]_17 chr2R:6241400-6241520 1.6e-05 19_[+2]_93 chrX:22486612-22486732 1.6e-05 84_[+2]_28 chrX:15841520-15841640 1.6e-05 75_[+2]_37 chr2R:11678913-11679033 1.6e-05 21_[+2]_91 chr2R:5308031-5308151 1.6e-05 73_[+2]_39 chr2L:4854983-4855103 1.6e-05 70_[+2]_42 chr2R:15328372-15328492 1.6e-05 24_[+2]_88 chr3L:19650248-19650368 1.6e-05 54_[+2]_58 chr2R:14493407-14493527 2.6e-05 71_[+2]_41 chr3R:14626067-14626187 2.6e-05 65_[+2]_47 chrX:2744706-2744826 2.6e-05 18_[+2]_94 chr3L:18419551-18419671 2.6e-05 75_[+2]_37 chr2L:122460-122580 2.6e-05 85_[+2]_27 chr2L:12028261-12028381 2.6e-05 60_[+2]_52 chr3R:31019845-31019965 2.6e-05 59_[+2]_53 chr3R:19176238-19176358 2.6e-05 98_[+2]_14 chrX:19785043-19785163 3.1e-05 107_[+2]_5 chr3L:20197188-20197308 3.1e-05 87_[+2]_25 chrX:11144739-11144859 3.1e-05 53_[+2]_59 chr2R:16576265-16576385 3.1e-05 35_[+2]_77 chr3R:6644569-6644689 3.1e-05 16_[+2]_96 chr3R:20593948-20594068 4.1e-05 94_[+2]_18 chr2L:13970119-13970239 4.1e-05 95_[+2]_17 chrX:11383688-11383808 4.1e-05 14_[+2]_98 chr3R:30450806-30450926 4.4e-05 94_[+2]_18 chr3L:14322516-14322636 6e-05 60_[+2]_52 chrX:19167445-19167565 8e-05 86_[+2]_26 chrX:19046024-19046144 8e-05 102_[+2]_10 chr2R:9555580-9555700 8e-05 62_[+2]_50 chrX:5919449-5919569 8e-05 78_[+2]_34 chr3L:21390565-21390685 8e-05 48_[+2]_64 chr2L:2941490-2941610 8e-05 98_[+2]_14 chrX:5467449-5467569 0.00012 100_[+2]_12 chr3R:31224122-31224242 0.00012 97_[+2]_15 chr2L:19097145-19097265 0.00012 62_[+2]_50 chr2L:3706268-3706388 0.00012 30_[+2]_82 chrX:9532014-9532134 0.00012 88_[+2]_24 chr2L:1907246-1907366 0.00012 54_[+2]_58 chr2R:23815664-23815784 0.00012 28_[+2]_84 chr3R:23871894-23872014 0.00012 56_[+2]_56 chr2R:15282005-15282125 0.00012 109_[+2]_3 chr2L:8420738-8420858 0.00012 2_[+2]_110 chr3L:18969040-18969160 0.00013 64_[+2]_48 chr3R:27159953-27160073 0.00013 32_[+2]_80 chr2L:18811513-18811633 0.00017 102_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTATCH width=8 seqs=49 chr2R:22357790-22357910 ( 109) GGGTATCC 1 chr3L:17915928-17916048 ( 51) GGGTATCT 1 chrX:19959712-19959832 ( 63) GGGTATCT 1 chrX:14784297-14784417 ( 96) GGGTATCT 1 chr2R:6241400-6241520 ( 20) GGGTATCT 1 chrX:22486612-22486732 ( 85) GGGTATCT 1 chrX:15841520-15841640 ( 76) GGGTATCT 1 chr2R:11678913-11679033 ( 22) GGGTATCT 1 chr2R:5308031-5308151 ( 74) GGGTATCT 1 chr2L:4854983-4855103 ( 71) GGGTATCT 1 chr2R:15328372-15328492 ( 25) GGGTATCT 1 chr3L:19650248-19650368 ( 55) GGGTATCT 1 chr2R:14493407-14493527 ( 72) GGGTATCA 1 chr3R:14626067-14626187 ( 66) GGGTATCA 1 chrX:2744706-2744826 ( 19) GGGTATCA 1 chr3L:18419551-18419671 ( 76) GGGTATCA 1 chr2L:122460-122580 ( 86) GGGTATCA 1 chr2L:12028261-12028381 ( 61) GGGTATCA 1 chr3R:31019845-31019965 ( 60) GGGTATCA 1 chr3R:19176238-19176358 ( 99) GGGTATCA 1 chrX:19785043-19785163 ( 108) GGGTATGC 1 chr3L:20197188-20197308 ( 88) GGGTATGC 1 chrX:11144739-11144859 ( 54) GGGTATGC 1 chr2R:16576265-16576385 ( 36) GGGTATGC 1 chr3R:6644569-6644689 ( 17) GGGTATGC 1 chr3R:20593948-20594068 ( 95) GGGTATGT 1 chr2L:13970119-13970239 ( 96) GGGTATGT 1 chrX:11383688-11383808 ( 15) GGGTATGT 1 chr3R:30450806-30450926 ( 95) GGGTAGCC 1 chr3L:14322516-14322636 ( 61) GGGTATGA 1 chrX:19167445-19167565 ( 87) GGGTATAC 1 chrX:19046024-19046144 ( 103) GGGTATAC 1 chr2R:9555580-9555700 ( 63) GGGTATTC 1 chrX:5919449-5919569 ( 79) GGGTATTC 1 chr3L:21390565-21390685 ( 49) GGGTATAC 1 chr2L:2941490-2941610 ( 99) GGGTATTC 1 chrX:5467449-5467569 ( 101) GGGTATTT 1 chr3R:31224122-31224242 ( 98) GGGTATAT 1 chr2L:19097145-19097265 ( 63) GGGTATAT 1 chr2L:3706268-3706388 ( 31) GGGTAGCA 1 chrX:9532014-9532134 ( 89) GGGTATTT 1 chr2L:1907246-1907366 ( 55) GGGTATTT 1 chr2R:23815664-23815784 ( 29) GGGTAGCA 1 chr3R:23871894-23872014 ( 57) GGGTATTT 1 chr2R:15282005-15282125 ( 110) GGGTAGCA 1 chr2L:8420738-8420858 ( 3) GGGTATAT 1 chr3L:18969040-18969160 ( 65) GGGTAGGC 1 chr3R:27159953-27160073 ( 33) GGGTAGGC 1 chr2L:18811513-18811633 ( 103) GGGTATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 6.9e-019 -1226 -1226 253 -1226 -1226 -1226 253 -1226 -1226 -1226 253 -1226 -1226 -1226 -1226 162 161 -1226 -1226 -1226 -1226 -1226 -50 144 -119 148 38 -118 -30 80 -1226 40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 6.9e-019 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.122449 0.877551 0.142857 0.489796 0.224490 0.142857 0.265306 0.306122 0.000000 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATCH MEME-2 regular expression -------------------------------------------------------------------------------- GGGTAT[CG][TCA] -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGTCGAG MEME-3 width = 8 sites = 26 llr = 256 E-value = 5.7e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a::::9: pos.-specific C 1:::8::1 probability G ::a::a:9 matrix T 8::a2:1: bits 2.5 * * 2.3 * * 2.0 * * * 1.8 * ** * Relative 1.5 ***** * Entropy 1.3 ******* (14.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TAGTCGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17915928-17916048 61 1.02e-05 gggtatctga tagtcgag actctagact chr2L:5781296-5781416 79 1.02e-05 aggtatgtgg tagtcgag gcactccatt chr2R:9874421-9874541 24 1.02e-05 gagaatgcta tagtcgag tttcccgact chrX:16837915-16838035 110 1.02e-05 CTgaatgcta tagtcgag ttc chr2R:6172360-6172480 35 1.02e-05 ggtaatgcta tagtcgag ttcgccgaat chrX:14784297-14784417 106 1.02e-05 gggtatctga tagtcgag atcatat chr2R:6241400-6241520 30 1.02e-05 gggtatctga tagtcgag gcactcgact chr4:54773-54893 38 1.02e-05 gagaatgcta tagtcgag tttcccgact chr2R:16576265-16576385 46 1.02e-05 GGGTAtgcgt tagtcgag ttgcgttgag chr2R:23069205-23069325 93 1.02e-05 TGGTATCTTT TAGTCGAG ACTAAGAGTT chr3R:4128480-4128600 58 1.02e-05 gagtatgata tagtcgag ttccccgact chr2R:5308031-5308151 84 1.02e-05 gggtatctgg tagtcgag aaactcgtct chr3L:19650248-19650368 65 1.02e-05 GGGTATCTGA TAGTCGAG ACAGTCTTTA chrX:5919449-5919569 90 1.58e-05 GGTATTCCCA CAGTCGAG TCGAAATAAA chrX:600281-600401 30 1.58e-05 CCAGCATCGC CAGTCGAG TCCATAATTT chr2R:11606589-11606709 2 2.62e-05 G TAGTCGAC ATCTAAATAC chrX:19959712-19959832 73 2.62e-05 GGGTATCTTT TAGTCGAC GCACTTTTCT chrX:20423342-20423462 105 2.62e-05 AGGTAACTAA TAGTCGAC TAATAACC chr2R:13499104-13499224 7 4.50e-05 ACTGTG TAGTTGAG GGTTGGTTAC chr3R:21253698-21253818 65 4.50e-05 AGGTATTTTC TAGTTGAG CCAGTGTCCC chr2R:11678913-11679033 32 4.50e-05 gggtatctga tagttgag ccattcgact chr2L:20026585-20026705 2 4.50e-05 T TAGTTGAG AATTATTGTA chr2R:18606705-18606825 60 5.53e-05 AAGAACGCTA AAGTCGAG ACTATTCGAT chr2L:19097145-19097265 73 5.53e-05 GGGTATATTA AAGTCGAG AGGGTCTCCG chr3R:27159953-27160073 91 6.55e-05 TATTGTGTAA TAGTCGTG TGACTAATAT chr2R:7377245-7377365 36 6.55e-05 aggtatctgg tagtcgtg acacttgact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17915928-17916048 1e-05 60_[+3]_52 chr2L:5781296-5781416 1e-05 78_[+3]_34 chr2R:9874421-9874541 1e-05 23_[+3]_89 chrX:16837915-16838035 1e-05 109_[+3]_3 chr2R:6172360-6172480 1e-05 34_[+3]_78 chrX:14784297-14784417 1e-05 105_[+3]_7 chr2R:6241400-6241520 1e-05 29_[+3]_83 chr4:54773-54893 1e-05 37_[+3]_75 chr2R:16576265-16576385 1e-05 45_[+3]_67 chr2R:23069205-23069325 1e-05 92_[+3]_20 chr3R:4128480-4128600 1e-05 57_[+3]_55 chr2R:5308031-5308151 1e-05 83_[+3]_29 chr3L:19650248-19650368 1e-05 64_[+3]_48 chrX:5919449-5919569 1.6e-05 89_[+3]_23 chrX:600281-600401 1.6e-05 29_[+3]_83 chr2R:11606589-11606709 2.6e-05 1_[+3]_111 chrX:19959712-19959832 2.6e-05 72_[+3]_40 chrX:20423342-20423462 2.6e-05 104_[+3]_8 chr2R:13499104-13499224 4.5e-05 6_[+3]_106 chr3R:21253698-21253818 4.5e-05 64_[+3]_48 chr2R:11678913-11679033 4.5e-05 31_[+3]_81 chr2L:20026585-20026705 4.5e-05 1_[+3]_111 chr2R:18606705-18606825 5.5e-05 59_[+3]_53 chr2L:19097145-19097265 5.5e-05 72_[+3]_40 chr3R:27159953-27160073 6.5e-05 90_[+3]_22 chr2R:7377245-7377365 6.5e-05 35_[+3]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGTCGAG width=8 seqs=26 chr3L:17915928-17916048 ( 61) TAGTCGAG 1 chr2L:5781296-5781416 ( 79) TAGTCGAG 1 chr2R:9874421-9874541 ( 24) TAGTCGAG 1 chrX:16837915-16838035 ( 110) TAGTCGAG 1 chr2R:6172360-6172480 ( 35) TAGTCGAG 1 chrX:14784297-14784417 ( 106) TAGTCGAG 1 chr2R:6241400-6241520 ( 30) TAGTCGAG 1 chr4:54773-54893 ( 38) TAGTCGAG 1 chr2R:16576265-16576385 ( 46) TAGTCGAG 1 chr2R:23069205-23069325 ( 93) TAGTCGAG 1 chr3R:4128480-4128600 ( 58) TAGTCGAG 1 chr2R:5308031-5308151 ( 84) TAGTCGAG 1 chr3L:19650248-19650368 ( 65) TAGTCGAG 1 chrX:5919449-5919569 ( 90) CAGTCGAG 1 chrX:600281-600401 ( 30) CAGTCGAG 1 chr2R:11606589-11606709 ( 2) TAGTCGAC 1 chrX:19959712-19959832 ( 73) TAGTCGAC 1 chrX:20423342-20423462 ( 105) TAGTCGAC 1 chr2R:13499104-13499224 ( 7) TAGTTGAG 1 chr3R:21253698-21253818 ( 65) TAGTTGAG 1 chr2R:11678913-11679033 ( 32) TAGTTGAG 1 chr2L:20026585-20026705 ( 2) TAGTTGAG 1 chr2R:18606705-18606825 ( 60) AAGTCGAG 1 chr2L:19097145-19097265 ( 73) AAGTCGAG 1 chr3R:27159953-27160073 ( 91) TAGTCGTG 1 chr2R:7377245-7377365 ( 36) TAGTCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 5.7e-008 -209 -119 -1134 138 161 -1134 -1134 -1134 -1134 -1134 253 -1134 -1134 -1134 -1134 162 -1134 227 -1134 -108 -1134 -1134 253 -1134 150 -1134 -1134 -207 -1134 -61 235 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 5.7e-008 0.076923 0.076923 0.000000 0.846154 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.000000 0.076923 0.000000 0.115385 0.884615 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCGAG MEME-3 regular expression -------------------------------------------------------------------------------- TAGTCGAG -------------------------------------------------------------------------------- Time 19.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCAGCW MEME-4 width = 8 sites = 11 llr = 118 E-value = 4.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::3 pos.-specific C ::9a:3a1 probability G aa1::7:2 matrix T :::::::5 bits 2.5 ** * * 2.3 ** * * 2.0 **** * 1.8 **** ** Relative 1.5 ******* Entropy 1.3 ******* (15.5 bits) 1.0 ******* 0.8 ******* 0.5 ******* 0.3 ******* 0.0 -------- Multilevel GGCCAGCT consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21266227-21266347 105 2.99e-06 TTAGATACGA GGCCAGCT CGCTTTAC chr2R:22313108-22313228 91 2.99e-06 TATGACAATT GGCCAGCT ATGGGTTTCA chr3R:20593948-20594068 15 4.59e-06 CACCAAACAC GGCCAGCG GTGCGCCCAC chr2L:12028261-12028381 43 4.59e-06 CTGCTTAACT GGCCAGCG ATAAAGAACA chr2L:18811314-18811434 8 7.61e-06 CTCCAGC GGCCAGCA ACGAATCGAC chrX:600281-600401 18 7.61e-06 GTATATTGTT GGCCAGCA TCGCCAGTCG chr3L:18419551-18419671 13 1.06e-05 CACAACACAA GGCCACCT TAACTTACAT chr3L:1152811-1152931 25 1.06e-05 GGGCATATTG GGCCACCT GTTGGCAGGT chr2L:16258418-16258538 25 1.23e-05 ACACAGAGAA GGCCAGCC AATTGCTGGA chr2L:20351847-20351967 8 1.70e-05 TGGTTTC GGCCACCA GGTCAAAAGC chr2R:22591020-22591140 107 2.16e-05 TCTATCGCGG GGGCAGCT CGAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21266227-21266347 3e-06 104_[+4]_8 chr2R:22313108-22313228 3e-06 90_[+4]_22 chr3R:20593948-20594068 4.6e-06 14_[+4]_98 chr2L:12028261-12028381 4.6e-06 42_[+4]_70 chr2L:18811314-18811434 7.6e-06 7_[+4]_105 chrX:600281-600401 7.6e-06 17_[+4]_95 chr3L:18419551-18419671 1.1e-05 12_[+4]_100 chr3L:1152811-1152931 1.1e-05 24_[+4]_88 chr2L:16258418-16258538 1.2e-05 24_[+4]_88 chr2L:20351847-20351967 1.7e-05 7_[+4]_105 chr2R:22591020-22591140 2.2e-05 106_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCAGCW width=8 seqs=11 chr3L:21266227-21266347 ( 105) GGCCAGCT 1 chr2R:22313108-22313228 ( 91) GGCCAGCT 1 chr3R:20593948-20594068 ( 15) GGCCAGCG 1 chr2L:12028261-12028381 ( 43) GGCCAGCG 1 chr2L:18811314-18811434 ( 8) GGCCAGCA 1 chrX:600281-600401 ( 18) GGCCAGCA 1 chr3L:18419551-18419671 ( 13) GGCCACCT 1 chr3L:1152811-1152931 ( 25) GGCCACCT 1 chr2L:16258418-16258538 ( 25) GGCCAGCC 1 chr2L:20351847-20351967 ( 8) GGCCACCA 1 chr2R:22591020-22591140 ( 107) GGGCAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 4.1e+001 -1010 -1010 253 -1010 -1010 -1010 253 -1010 -1010 237 -93 -1010 -1010 251 -1010 -1010 161 -1010 -1010 -1010 -1010 63 207 -1010 -1010 251 -1010 -1010 -26 -95 7 49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.1e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.090909 0.181818 0.454545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGCW MEME-4 regular expression -------------------------------------------------------------------------------- GGCCA[GC]C[TA] -------------------------------------------------------------------------------- Time 26.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGCCC MEME-5 width = 8 sites = 4 llr = 49 E-value = 5.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C ::a::8aa probability G aa::a3:: matrix T :::8:::: bits 2.5 *** * ** 2.3 *** * ** 2.0 *** * ** 1.8 *** **** Relative 1.5 *** **** Entropy 1.3 *** **** (17.6 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCTGCCC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20384822-20384942 37 1.61e-06 ATCAACTTTT GGCTGCCC TGTAAATTTA chr2L:1907246-1907366 111 1.61e-06 CAACAAGAGA GGCTGCCC AA chr3R:24100847-24100967 72 4.82e-06 TTGGAGCTGC GGCAGCCC AATATGCCCC chr2R:23815664-23815784 46 4.82e-06 ATATAGTAGG GGCTGGCC TATTATCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20384822-20384942 1.6e-06 36_[+5]_76 chr2L:1907246-1907366 1.6e-06 110_[+5]_2 chr3R:24100847-24100967 4.8e-06 71_[+5]_41 chr2R:23815664-23815784 4.8e-06 45_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGCCC width=8 seqs=4 chr2L:20384822-20384942 ( 37) GGCTGCCC 1 chr2L:1907246-1907366 ( 111) GGCTGCCC 1 chr3R:24100847-24100967 ( 72) GGCAGCCC 1 chr2R:23815664-23815784 ( 46) GGCTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 5.6e+004 -865 -865 253 -865 -865 -865 253 -865 -865 251 -865 -865 -39 -865 -865 121 -865 -865 253 -865 -865 209 53 -865 -865 251 -865 -865 -865 251 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCC MEME-5 regular expression -------------------------------------------------------------------------------- GGC[TA]G[CG]CC -------------------------------------------------------------------------------- Time 32.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14224356-14224476 5.60e-01 120 chr3L:19650248-19650368 1.06e-03 54_[+2(1.56e-05)]_2_[+3(1.02e-05)]_\ 48 chr3R:19176238-19176358 8.16e-04 42_[+1(1.05e-05)]_48_[+2(2.59e-05)]_\ 14 chr2R:18528022-18528142 2.48e-01 120 chr2L:15491042-15491162 7.83e-01 120 chrX:6253311-6253431 6.21e-02 16_[+1(2.19e-05)]_96 chr2L:20026585-20026705 1.23e-01 1_[+3(4.50e-05)]_111 chr3L:11967026-11967146 3.14e-01 120 chr3R:9500452-9500572 4.09e-04 56_[+1(1.05e-05)]_56 chr3L:9673646-9673766 5.21e-01 120 chr2L:7837336-7837456 7.88e-01 120 chrX:600281-600401 5.10e-04 17_[+4(7.61e-06)]_4_[+3(1.58e-05)]_\ 83 chrX:2350984-2351104 2.07e-01 10_[+1(9.35e-05)]_102 chr2L:2941490-2941610 3.04e-01 98_[+2(8.00e-05)]_14 chr2L:4134092-4134212 1.48e-01 13_[+1(1.62e-05)]_99 chr3R:23592868-23592988 6.25e-02 18_[+1(1.05e-05)]_94 chr2R:15328372-15328492 4.57e-02 24_[+2(1.56e-05)]_88 chr2L:4854983-4855103 1.85e-02 70_[+2(1.56e-05)]_42 chr2R:7377245-7377365 8.41e-02 35_[+3(6.55e-05)]_77 chr2L:11589165-11589285 9.59e-01 120 chr3L:18093970-18094090 2.10e-01 120 chrX:11066323-11066443 9.36e-02 120 chrX:19174266-19174386 9.78e-01 120 chr3L:16728153-16728273 9.90e-01 120 chr3R:9002682-9002802 3.06e-03 55_[+1(1.05e-05)]_57 chr2R:5308031-5308151 5.49e-04 73_[+2(1.56e-05)]_2_[+3(1.02e-05)]_\ 29 chr2L:8420738-8420858 1.30e-01 120 chr2R:11429926-11430046 3.74e-01 120 chr2R:15282005-15282125 3.33e-04 70_[+1(1.62e-05)]_42 chr3L:19188828-19188948 7.79e-03 6_[+1(1.05e-05)]_106 chr3R:26906839-26906959 4.40e-01 120 chr3R:25375626-25375746 1.83e-01 120 chr2R:14959806-14959926 5.17e-02 120 chr2R:14054465-14054585 6.13e-02 120 chr3R:30286504-30286624 6.38e-01 120 chrX:1974062-1974182 9.36e-01 120 chr3R:4602006-4602126 4.09e-01 120 chr3R:13782167-13782287 2.20e-01 120 chr2R:8814713-8814833 3.12e-02 8_[+5(5.98e-05)]_104 chrX:18920461-18920581 6.49e-01 120 chr3R:30744050-30744170 5.79e-02 120 chr2L:2616051-2616171 3.93e-01 120 chr3R:30214780-30214900 3.19e-01 120 chrX:11875263-11875383 3.16e-02 6_[+1(6.08e-05)]_106 chr3R:12186593-12186713 6.53e-01 120 chr3L:21390565-21390685 3.26e-02 48_[+2(8.00e-05)]_64 chrX:10599607-10599727 6.57e-01 120 chrX:10484379-10484499 3.49e-01 120 chr2R:11678913-11679033 4.35e-03 21_[+2(1.56e-05)]_2_[+3(4.50e-05)]_\ 81 chrX:6874362-6874482 4.07e-02 120 chrX:15300365-15300485 5.20e-02 120 chr2L:4422305-4422425 9.39e-03 40_[+1(1.62e-05)]_72 chrX:11383688-11383808 7.30e-03 1_[+1(9.35e-05)]_5_[+2(4.12e-05)]_\ 98 chr3L:20869201-20869321 8.22e-01 120 chrX:437524-437644 3.57e-01 120 chr2R:22313108-22313228 7.97e-04 90_[+4(2.99e-06)]_22 chr3L:9846704-9846824 2.93e-02 120 chr2R:13005428-13005548 9.97e-01 120 chr2L:500800-500920 8.66e-01 120 chr2L:5778307-5778427 3.21e-01 120 chr2L:6239427-6239547 5.41e-02 9_[+1(3.25e-05)]_103 chr2R:6129787-6129907 4.07e-01 120 chr3R:4128480-4128600 3.05e-03 57_[+3(1.02e-05)]_55 chr3R:23871894-23872014 8.90e-02 120 chr2L:10683061-10683181 8.89e-01 120 chr2R:23815664-23815784 3.62e-04 45_[+5(4.82e-06)]_67 chr3R:22496892-22497012 7.25e-01 120 chr3R:6644569-6644689 7.64e-02 16_[+2(3.13e-05)]_96 chr3R:11809307-11809427 3.93e-01 120 chrX:8200409-8200529 1.41e-01 14_[+1(5.21e-05)]_98 chr3R:7793590-7793710 1.61e-01 36_[+1(5.21e-05)]_76 chr2R:12813533-12813653 1.93e-01 120 chr2L:12904084-12904204 9.95e-01 120 chr3L:6315853-6315973 2.43e-02 90_[+4(3.53e-05)]_22 chr2R:23069205-23069325 4.49e-03 92_[+3(1.02e-05)]_20 chr2R:16576265-16576385 1.20e-04 35_[+2(3.13e-05)]_2_[+3(1.02e-05)]_\ 67 chr2R:10788568-10788688 7.01e-01 120 chr2R:6948014-6948134 9.72e-01 120 chrX:7693529-7693649 5.10e-02 42_[+1(1.62e-05)]_70 chr2R:22357790-22357910 3.24e-02 108_[+2(5.51e-06)]_4 chr2R:8452223-8452343 2.86e-01 24_[+3(8.14e-05)]_88 chr3R:21253698-21253818 3.45e-02 64_[+3(4.50e-05)]_48 chr2R:22313307-22313427 7.04e-01 120 chr3R:15611828-15611948 5.06e-01 120 chr2R:13499104-13499224 1.81e-02 6_[+3(4.50e-05)]_106 chr2R:13956418-13956538 4.87e-01 120 chr3R:24099706-24099826 8.86e-01 120 chr2L:433466-433586 2.60e-02 88_[+1(1.05e-05)]_24 chrX:15841520-15841640 1.15e-02 75_[+2(1.56e-05)]_37 chr3L:12720888-12721008 7.40e-01 120 chr3R:5193426-5193546 6.29e-01 120 chrX:7715461-7715581 9.93e-01 120 chrX:18140106-18140226 5.06e-02 4_[+1(5.77e-05)]_108 chr2R:9930446-9930566 2.07e-02 14_[+1(1.05e-05)]_98 chrX:7432839-7432959 9.36e-01 120 chr2L:3085472-3085592 2.57e-01 120 chrX:14861749-14861869 9.33e-01 120 chr3R:30450806-30450926 2.13e-03 94_[+2(4.42e-05)]_18 chr2L:10323220-10323340 5.77e-01 120 chr4:54773-54893 7.44e-04 37_[+3(1.02e-05)]_75 chr3R:31019845-31019965 2.68e-02 59_[+2(2.59e-05)]_53 chr2R:8190077-8190197 3.81e-01 120 chr2L:13970119-13970239 1.70e-01 95_[+2(4.12e-05)]_17 chrX:3352990-3353110 1.50e-01 120 chr2L:1299552-1299672 5.49e-01 120 chr3L:4526260-4526380 4.26e-01 120 chr2R:22386671-22386791 4.61e-01 120 chrX:5919449-5919569 7.80e-03 78_[+2(8.00e-05)]_3_[+3(1.58e-05)]_\ 23 chr2L:4218951-4219071 3.69e-01 120 chrX:22486612-22486732 1.97e-02 84_[+2(1.56e-05)]_28 chr2R:11186157-11186277 8.08e-01 120 chr2R:9555580-9555700 5.19e-03 62_[+2(8.00e-05)]_50 chr2L:19855414-19855534 5.55e-02 120 chr2L:1907246-1907366 1.14e-03 110_[+5(1.61e-06)]_2 chr3R:14329720-14329840 7.66e-01 120 chr2L:5027812-5027932 6.54e-01 120 chrX:19167737-19167857 9.75e-01 120 chr3R:9970634-9970754 9.98e-01 120 chr2L:1093180-1093300 1.70e-01 22_[+1(5.77e-05)]_90 chr2R:15364309-15364429 9.88e-01 120 chrX:20423342-20423462 1.04e-01 104_[+3(2.62e-05)]_8 chrX:9532014-9532134 2.65e-02 120 chrX:15818765-15818885 1.09e-01 120 chrX:18341096-18341216 9.98e-01 120 chr2L:11593313-11593433 8.52e-01 120 chr3R:24138602-24138722 1.05e-02 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chr2R:24230261-24230381 8.76e-01 120 chr3R:17147970-17148090 9.49e-01 120 chr3L:22944651-22944771 1.19e-01 120 chr2R:6241400-6241520 1.60e-03 19_[+2(1.56e-05)]_2_[+3(1.02e-05)]_\ 83 chr2L:13970325-13970445 8.76e-01 120 chrX:3635042-3635162 6.64e-01 120 chr2R:13839650-13839770 7.45e-01 120 chr2L:2439011-2439131 1.85e-01 120 chr2L:12028261-12028381 8.20e-04 42_[+4(4.59e-06)]_10_[+2(2.59e-05)]_\ 52 chr3R:30801797-30801917 3.36e-02 45_[+1(1.62e-05)]_67 chr2L:3524880-3525000 8.11e-01 120 chr2L:1902665-1902785 4.76e-01 120 chr2L:122460-122580 8.21e-02 85_[+2(2.59e-05)]_27 chr2L:14993248-14993368 6.50e-01 120 chr2R:13920599-13920719 4.20e-01 120 chr2L:14843734-14843854 1.78e-01 120 chr3L:18419551-18419671 7.93e-04 12_[+4(1.06e-05)]_55_[+2(2.59e-05)]_\ 37 chr2L:11974494-11974614 9.07e-01 120 chr3L:16881199-16881319 2.13e-02 36_[+1(1.05e-05)]_76 chrX:14784297-14784417 1.79e-03 95_[+2(1.56e-05)]_2_[+3(1.02e-05)]_\ 7 chrX:921510-921630 6.54e-01 120 chr2R:6172360-6172480 9.83e-03 34_[+3(1.02e-05)]_78 chr3R:27159953-27160073 6.28e-03 90_[+3(6.55e-05)]_22 chr2R:19640478-19640598 9.25e-01 120 chrX:9121557-9121677 3.84e-02 120 chr3R:29907762-29907882 1.68e-01 120 chr3L:14322516-14322636 2.53e-03 25_[+4(4.31e-05)]_27_[+2(5.97e-05)]_\ 52 chrX:19046024-19046144 3.38e-01 102_[+2(8.00e-05)]_10 chr2L:8698340-8698460 6.21e-01 120 chrX:19959712-19959832 1.39e-03 62_[+2(1.56e-05)]_2_[+3(2.62e-05)]_\ 40 chrX:16837915-16838035 5.72e-03 109_[+3(1.02e-05)]_3 chr3R:20265402-20265522 7.52e-01 120 chr3R:9351210-9351330 4.92e-02 120 chr3L:3124311-3124431 1.53e-01 120 chr3L:7344389-7344509 2.38e-01 120 chr2L:8990246-8990366 5.40e-03 120 chr3R:6388414-6388534 3.20e-01 120 chr2L:18811513-18811633 3.73e-01 120 chr3R:23657498-23657618 7.85e-02 120 chr2L:893340-893460 9.06e-01 120 chrX:11144739-11144859 6.82e-04 53_[+2(3.13e-05)]_59 chrX:8883536-8883656 1.91e-01 120 chrX:1260493-1260613 2.13e-02 79_[+1(1.05e-05)]_33 chr3L:16371197-16371317 3.92e-02 120 chrX:18276686-18276806 1.15e-02 70_[+1(5.77e-05)]_42 chr3L:16158522-16158642 5.59e-02 120 chr3R:6644769-6644889 1.16e-01 120 chr3R:20263382-20263502 3.78e-01 120 chr3L:12184106-12184226 1.92e-01 120 chrX:2464299-2464419 4.02e-03 120 chr2L:10147422-10147542 4.08e-01 120 chr2R:23395768-23395888 2.45e-01 120 chr2R:15326408-15326528 5.00e-01 120 chr3R:30531490-30531610 9.20e-01 120 chrX:14764223-14764343 2.11e-02 120 chrX:8890005-8890125 7.19e-01 120 chr2L:5289475-5289595 1.62e-02 120 chr2R:9874421-9874541 1.46e-03 23_[+3(1.02e-05)]_89 chr3L:1629534-1629654 9.73e-01 120 chr3L:20197188-20197308 1.02e-01 87_[+2(3.13e-05)]_25 chr2L:18659878-18659998 9.77e-01 120 chr3L:18969040-18969160 8.21e-03 120 chr2R:15326608-15326728 6.93e-02 50_[+1(1.05e-05)]_62 chr3L:17313338-17313458 2.87e-01 8_[+1(9.35e-05)]_104 chr2L:9334029-9334149 1.01e-02 45_[+1(1.05e-05)]_67 chr3R:31224122-31224242 3.59e-03 20_[+1(1.62e-05)]_92 chr2L:20240654-20240774 4.05e-03 82_[+1(1.62e-05)]_30 chrX:2744706-2744826 6.13e-02 18_[+2(2.59e-05)]_94 chr3L:17003287-17003407 8.46e-02 120 chr3L:1000961-1001081 8.59e-01 120 chrX:7477235-7477355 3.76e-02 [+1(1.05e-05)]_112 chr3R:14064042-14064162 9.96e-01 120 chr2R:9420853-9420973 7.40e-02 120 chr3R:20593948-20594068 4.15e-04 14_[+4(4.59e-06)]_72_[+2(4.12e-05)]_\ 18 chr3R:14626067-14626187 1.49e-02 65_[+2(2.59e-05)]_47 chr3L:21266227-21266347 2.72e-05 29_[+1(2.19e-05)]_67_[+4(2.99e-06)]_\ 8 chrX:699770-699890 3.32e-01 120 chr3L:11974028-11974148 8.94e-01 120 chr2L:8255522-8255642 1.00e+00 120 chr3L:8699168-8699288 1.59e-01 120 chrX:11559786-11559906 1.03e-01 120 chr3L:15116890-15117010 2.85e-04 37_[+5(5.98e-05)]_34_[+1(1.05e-05)]_\ 33 chrX:1170381-1170501 9.98e-02 120 chr2L:2039286-2039406 2.07e-01 18_[+1(3.25e-05)]_94 chr3L:7018692-7018812 9.91e-01 120 chr3R:30809700-30809820 7.90e-02 57_[+1(5.77e-05)]_55 chr3L:11801748-11801868 9.66e-01 120 chr2R:11606589-11606709 1.07e-01 1_[+3(2.62e-05)]_111 chr3R:20549378-20549498 3.43e-01 120 chr2R:22411239-22411359 1.64e-02 23_[+1(1.05e-05)]_89 chrX:19785043-19785163 4.15e-02 107_[+2(3.13e-05)]_5 chr2R:18606705-18606825 2.27e-02 59_[+3(5.53e-05)]_53 chrX:2198994-2199114 7.98e-02 120 chr3L:9432368-9432488 5.03e-03 120 chr2L:5781296-5781416 3.13e-03 56_[+3(4.50e-05)]_14_[+3(1.02e-05)]_\ 34 chr3L:17915928-17916048 3.92e-05 50_[+2(1.56e-05)]_2_[+3(1.02e-05)]_\ 24_[+1(8.28e-05)]_20 chr2L:18811314-18811434 2.03e-02 7_[+4(7.61e-06)]_105 chr3R:24100847-24100967 1.46e-03 71_[+5(4.82e-06)]_41 chr3R:14624793-14624913 6.20e-01 120 chr2R:16579988-16580108 1.81e-01 112_[+1(3.25e-05)] chrX:5467449-5467569 3.35e-02 120 chr2R:14493407-14493527 5.02e-02 71_[+2(2.59e-05)]_41 chrX:19167445-19167565 2.98e-03 86_[+2(8.00e-05)]_5_[+1(5.21e-05)]_\ 13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************