******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/D19A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:28572831-28572951 1.0000 120 chr2R:19148454-19148574 1.0000 120 chrX:15816284-15816404 1.0000 120 chr3R:21393460-21393580 1.0000 120 chrX:2980460-2980580 1.0000 120 chr4:434429-434549 1.0000 120 chr4:374353-374473 1.0000 120 chr2L:21572490-21572610 1.0000 120 chr2L:21572743-21572863 1.0000 120 chrX:8617172-8617292 1.0000 120 chr3L:15200403-15200523 1.0000 120 chr2L:22114580-22114700 1.0000 120 chr3R:15628157-15628277 1.0000 120 chrX:1183881-1184001 1.0000 120 chr3L:10959036-10959156 1.0000 120 chr2L:5558947-5559067 1.0000 120 chr3R:29259605-29259725 1.0000 120 chr3L:18017032-18017152 1.0000 120 chr3R:17951930-17952050 1.0000 120 chrX:8579236-8579356 1.0000 120 chr3R:29689985-29690105 1.0000 120 chr4:307082-307202 1.0000 120 chr3L:9026707-9026827 1.0000 120 chr3R:4780860-4780980 1.0000 120 chrX:16690148-16690268 1.0000 120 chr2R:15907971-15908091 1.0000 120 chr3L:19078593-19078713 1.0000 120 chr3L:2118231-2118351 1.0000 120 chr3L:18449830-18449950 1.0000 120 chr3L:18226843-18226963 1.0000 120 chr2R:9403297-9403417 1.0000 120 chr3L:8748450-8748570 1.0000 120 chr3R:6899061-6899181 1.0000 120 chrX:18618261-18618381 1.0000 120 chrX:18897417-18897537 1.0000 120 chr3R:17830667-17830787 1.0000 120 chr3L:14089655-14089775 1.0000 120 chr3R:29549296-29549416 1.0000 120 chr2L:2459377-2459497 1.0000 120 chr3L:4619251-4619371 1.0000 120 chr3R:21642773-21642893 1.0000 120 chr2R:22478139-22478259 1.0000 120 chr3R:29292041-29292161 1.0000 120 chr2R:14072118-14072238 1.0000 120 chrX:1256291-1256411 1.0000 120 chr3R:9235196-9235316 1.0000 120 chr3R:21643784-21643904 1.0000 120 chr2L:2636727-2636847 1.0000 120 chrX:21282133-21282253 1.0000 120 chr3L:15035700-15035820 1.0000 120 chr3R:31300612-31300732 1.0000 120 chr3L:18434804-18434924 1.0000 120 chr3L:18796538-18796658 1.0000 120 chr3R:30394036-30394156 1.0000 120 chr3R:22269952-22270072 1.0000 120 chr2R:8612192-8612312 1.0000 120 chr2R:14777595-14777715 1.0000 120 chrX:13249293-13249413 1.0000 120 chr4:818412-818532 1.0000 120 chr3R:19347825-19347945 1.0000 120 chr3R:16669954-16670074 1.0000 120 chr3R:5063883-5064003 1.0000 120 chr2L:19787558-19787678 1.0000 120 chr3L:6837665-6837785 1.0000 120 chr4:318907-319027 1.0000 120 chr3R:23036483-23036603 1.0000 120 chrX:7459096-7459216 1.0000 120 chr3L:18394122-18394242 1.0000 120 chrX:3043431-3043551 1.0000 120 chr3L:21380922-21381042 1.0000 120 chr2L:312744-312864 1.0000 120 chrX:6643487-6643607 1.0000 120 chr2L:14440215-14440335 1.0000 120 chr3L:18345118-18345238 1.0000 120 chr2L:7588192-7588312 1.0000 120 chr2R:13635085-13635205 1.0000 120 chr2L:16380502-16380622 1.0000 120 chr2L:5899808-5899928 1.0000 120 chr2L:4627410-4627530 1.0000 120 chr2L:17615592-17615712 1.0000 120 chr2L:17220923-17221043 1.0000 120 chr3L:5850221-5850341 1.0000 120 chr2R:6234516-6234636 1.0000 120 chrX:4583103-4583223 1.0000 120 chr3R:25096671-25096791 1.0000 120 chr3R:5013656-5013776 1.0000 120 chr4:498578-498698 1.0000 120 chr2L:7089522-7089642 1.0000 120 chr2R:22246039-22246159 1.0000 120 chr4:239588-239708 1.0000 120 chr2R:7690240-7690360 1.0000 120 chr2R:4186071-4186191 1.0000 120 chr3L:10833337-10833457 1.0000 120 chr2R:15725727-15725847 1.0000 120 chr3L:18258855-18258975 1.0000 120 chrX:12246415-12246535 1.0000 120 chr3R:28556111-28556231 1.0000 120 chr3R:30816360-30816480 1.0000 120 chr2L:20801512-20801632 1.0000 120 chr3L:17235162-17235282 1.0000 120 chr2R:15359462-15359582 1.0000 120 chr3L:22146975-22147095 1.0000 120 chr3L:17624333-17624453 1.0000 120 chr3R:17888882-17889002 1.0000 120 chr2R:6341951-6342071 1.0000 120 chr3L:21448825-21448945 1.0000 120 chr3R:4838373-4838493 1.0000 120 chrX:7276060-7276180 1.0000 120 chr2R:14033038-14033158 1.0000 120 chr3R:4726969-4727089 1.0000 120 chr3R:23497391-23497511 1.0000 120 chr2R:15915851-15915971 1.0000 120 chr2L:22993918-22994038 1.0000 120 chrX:17521416-17521536 1.0000 120 chr2R:6553992-6554112 1.0000 120 chr2L:12002561-12002681 1.0000 120 chr3L:19776564-19776684 1.0000 120 chrX:12076400-12076520 1.0000 120 chr3L:20003233-20003353 1.0000 120 chr3L:18334384-18334504 1.0000 120 chrX:17334202-17334322 1.0000 120 chrX:16208398-16208518 1.0000 120 chr2L:7850058-7850178 1.0000 120 chr2R:2309224-2309344 1.0000 120 chr3R:4524524-4524644 1.0000 120 chr2L:18497345-18497465 1.0000 120 chr2R:20100683-20100803 1.0000 120 chrX:17342149-17342269 1.0000 120 chr3R:13429868-13429988 1.0000 120 chr3R:30745397-30745517 1.0000 120 chr3L:15323743-15323863 1.0000 120 chr2L:19800084-19800204 1.0000 120 chr2L:4185760-4185880 1.0000 120 chr2L:19011677-19011797 1.0000 120 chr3L:14569989-14570109 1.0000 120 chr2R:18804935-18805055 1.0000 120 chr3L:15760606-15760726 1.0000 120 chrX:262995-263115 1.0000 120 chr3L:21797411-21797531 1.0000 120 chr2L:15409260-15409380 1.0000 120 chr2L:18929769-18929889 1.0000 120 chrX:14215962-14216082 1.0000 120 chr3R:4476134-4476254 1.0000 120 chr3L:22273695-22273815 1.0000 120 chr3R:20846463-20846583 1.0000 120 chr2R:24083427-24083547 1.0000 120 chrX:292097-292217 1.0000 120 chr3R:13407155-13407275 1.0000 120 chrX:14066015-14066135 1.0000 120 chr3L:10392998-10393118 1.0000 120 chr2L:18780746-18780866 1.0000 120 chr3L:78458-78578 1.0000 120 chr3R:16187876-16187996 1.0000 120 chr3L:21044877-21044997 1.0000 120 chr3L:13099767-13099887 1.0000 120 chrX:19806273-19806393 1.0000 120 chr2L:18803999-18804119 1.0000 120 chr3L:13126156-13126276 1.0000 120 chr3R:10640011-10640131 1.0000 120 chr2R:14336630-14336750 1.0000 120 chr2R:15846727-15846847 1.0000 120 chr3R:19824629-19824749 1.0000 120 chr3R:5024656-5024776 1.0000 120 chr3R:15501732-15501852 1.0000 120 chr4:183476-183596 1.0000 120 chr3L:454932-455052 1.0000 120 chr2L:1404224-1404344 1.0000 120 chr2L:3550740-3550860 1.0000 120 chr2L:16374857-16374977 1.0000 120 chr2L:7912988-7913108 1.0000 120 chr2R:11494383-11494503 1.0000 120 chr3L:22006215-22006335 1.0000 120 chr3L:7906613-7906733 1.0000 120 chr2L:19798443-19798563 1.0000 120 chr3L:22883763-22883883 1.0000 120 chr2L:22144805-22144925 1.0000 120 chr2L:13586763-13586883 1.0000 120 chr2R:4823475-4823595 1.0000 120 chr2R:6786433-6786553 1.0000 120 chr2R:11498915-11499035 1.0000 120 chr3L:22433954-22434074 1.0000 120 chr2R:20953216-20953336 1.0000 120 chr2L:21368632-21368752 1.0000 120 chr3R:25448384-25448504 1.0000 120 chr3R:18026691-18026811 1.0000 120 chrX:3981836-3981956 1.0000 120 chr2L:19471802-19471922 1.0000 120 chrX:7094694-7094814 1.0000 120 chrX:11924820-11924940 1.0000 120 chr3L:4966889-4967009 1.0000 120 chr2R:14341805-14341925 1.0000 120 chr3L:19603364-19603484 1.0000 120 chr3L:8580263-8580383 1.0000 120 chrX:17817670-17817790 1.0000 120 chr3L:18342052-18342172 1.0000 120 chr2L:7085672-7085792 1.0000 120 chr2L:14457633-14457753 1.0000 120 chr3R:21507644-21507764 1.0000 120 chr3R:28630231-28630351 1.0000 120 chrX:17306518-17306638 1.0000 120 chr2R:23730077-23730197 1.0000 120 chr2R:21077875-21077995 1.0000 120 chr2R:5651862-5651982 1.0000 120 chr3R:22050566-22050686 1.0000 120 chr2L:5888487-5888607 1.0000 120 chr3R:29273184-29273304 1.0000 120 chr3L:18364732-18364852 1.0000 120 chr2L:21151029-21151149 1.0000 120 chr3L:15748695-15748815 1.0000 120 chr2L:14473148-14473268 1.0000 120 chr4:252218-252338 1.0000 120 chr2L:7621837-7621957 1.0000 120 chr2R:16387643-16387763 1.0000 120 chr2R:20594495-20594615 1.0000 120 chrX:16760687-16760807 1.0000 120 chr2R:6597359-6597479 1.0000 120 chr2R:11612065-11612185 1.0000 120 chr2R:6712746-6712866 1.0000 120 chr3R:15471884-15472004 1.0000 120 chr4:75394-75514 1.0000 120 chr2L:3831823-3831943 1.0000 120 chr2R:15699680-15699800 1.0000 120 chrX:17297054-17297174 1.0000 120 chr3L:383044-383164 1.0000 120 chrX:18262301-18262421 1.0000 120 chr2R:15095750-15095870 1.0000 120 chr2L:4998888-4999008 1.0000 120 chr3L:20977135-20977255 1.0000 120 chr4:41757-41877 1.0000 120 chrX:8450680-8450800 1.0000 120 chr3R:22719062-22719182 1.0000 120 chr3R:16875982-16876102 1.0000 120 chr2R:6609068-6609188 1.0000 120 chr2R:25010003-25010123 1.0000 120 chr2R:13896759-13896879 1.0000 120 chr2L:19894981-19895101 1.0000 120 chr3L:6219094-6219214 1.0000 120 chr4:664413-664533 1.0000 120 chr3L:22175963-22176083 1.0000 120 chr3L:14985692-14985812 1.0000 120 chrX:9742228-9742348 1.0000 120 chr4:1268377-1268497 1.0000 120 chr3L:2504902-2505022 1.0000 120 chr3R:10679582-10679702 1.0000 120 chrX:18585992-18586112 1.0000 120 chr2L:12486022-12486142 1.0000 120 chr2R:11949199-11949319 1.0000 120 chr2L:7135798-7135918 1.0000 120 chr3R:8687384-8687504 1.0000 120 chr3L:5840996-5841116 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_D19A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/D19A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.349 C 0.147 G 0.153 T 0.351 Background letter frequencies (from file dataset with add-one prior applied): A 0.349 C 0.147 G 0.153 T 0.351 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WAGGGTAT MEME-1 width = 8 sites = 55 llr = 451 E-value = 3.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6a:3:1a: pos.-specific C :::::2:: probability G ::a7a::1 matrix T 4::::8:9 bits 2.8 * * 2.5 * * 2.2 * * 1.9 * * Relative 1.7 * * Entropy 1.4 ** * ** (11.8 bits) 1.1 **** ** 0.8 ******* 0.6 ******* 0.3 ******** 0.0 -------- Multilevel AAGGGTAT consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17297054-17297174 113 1.88e-05 TACTCCAAGC AAGGGTAT chr2R:21077875-21077995 84 1.88e-05 TGTATAATAT AAGGGTAT ACGAACTCCG chr2L:14457633-14457753 94 1.88e-05 TATCCAAAGT AAGGGTAT TACAATAAGA chr2R:14341805-14341925 81 1.88e-05 AGATGGAACA AAGGGTAT TGAGTATTCC chr3L:22883763-22883883 108 1.88e-05 AAACTCCAGC AAGGGTAT ATAAG chr3L:7906613-7906733 111 1.88e-05 TACCCCGAGG AAGGGTAT GC chr2R:15846727-15846847 72 1.88e-05 GTTGTTCCAG AAGGGTAT TTGTCAATTC chr3R:16187876-16187996 79 1.88e-05 CCCCCTGCTA AAGGGTAT TTTCGCTTCG chr3L:22273695-22273815 67 1.88e-05 TTGTTTTACA AAGGGTAT TGCCTAGTCG chr3R:5013656-5013776 76 1.88e-05 ACTCTGCACA AAGGGTAT CTGCACTTCT chr3L:5850221-5850341 64 1.88e-05 TCTACACTTG AAGGGTAT TTCATATTCG chrX:3043431-3043551 41 1.88e-05 GTGCTTAAAA AAGGGTAT TATTTAAATG chr3R:29292041-29292161 40 1.88e-05 CCTTACAGAG AAGGGTAT TGTGGTTAGT chr2L:2459377-2459497 34 1.88e-05 aTATCGACGA AAGGGTAT TCAAACTTCG chr2L:19894981-19895101 86 3.76e-05 GGTATAGGTA TAGGGTAT AACACAACAT chr3L:20977135-20977255 98 3.76e-05 GTATTTTGTG TAGGGTAT TTACAGTGCG chr4:75394-75514 62 3.76e-05 tagagtaggg tagggtat tccagattct chr2R:6597359-6597479 92 3.76e-05 ACCGTAATGT TAGGGTAT TCACAACTTC chr3L:21044877-21044997 112 3.76e-05 CAACTCTAGT TAGGGTAT T chrX:16208398-16208518 87 3.76e-05 GAATATGTGA TAGGGTAT CTCAATGGTT chr3R:4838373-4838493 106 3.76e-05 GCATTACTTG TAGGGTAT ATAAGCT chr2L:4627410-4627530 85 3.76e-05 TGACCTCAGT TAGGGTAT GGGATTAGAA chr4:183476-183596 24 4.55e-05 ttctaaggtg aagggcat attttgtcaa chr2R:14777595-14777715 100 5.34e-05 CTAAAATTGC TAGGGCAT AGAAACTTCG chr2L:7135798-7135918 94 9.62e-05 TTCAATATTA AAGAGTAT TTCCAAATTC chr2R:15699680-15699800 91 9.62e-05 GATATAAGGA AAGAGTAT TTGCGGCGAG chr2L:7621837-7621957 100 9.62e-05 CTTGAAAAGT AAGAGTAT TAAATATTCG chr3R:29273184-29273304 112 9.62e-05 TATACTTAGG AAGAGTAT A chr3L:21380922-21381042 101 9.62e-05 ATTATTCTAT AAGAGTAT ATCAGACTCG chr3L:14089655-14089775 80 9.62e-05 AATTACAGCA AAGAGTAT ACAATCTGCG chrX:17306518-17306638 93 1.04e-04 CCCTTTCTCG CAGGGTAT CACGTCGACA chr3R:30816360-30816480 108 1.04e-04 CGTTTGCCAT CAGGGTAT TTCCA chr2L:19471802-19471922 94 1.12e-04 CCGTCGGTAT GAGGGTAT CATCTCTGGC chr2R:6234516-6234636 81 1.12e-04 ATCAATATGT GAGGGTAT ATGAGATTCG chrX:8450680-8450800 108 1.63e-04 TTTTTCGGGT TAGAGTAT CTGCA chr2L:1404224-1404344 97 1.63e-04 CCGACCTAAA TAGAGTAT GTATTGTGAC chr3R:19824629-19824749 66 1.63e-04 CAGTTCTTCT TAGAGTAT TTAATATTCG chr3L:13126156-13126276 3 1.63e-04 TG TAGAGTAT TAGAATTGAT chr3R:30745397-30745517 84 1.63e-04 ACATTTTTAG TAGAGTAT TTATATTTTC chrX:16690148-16690268 107 1.63e-04 GAATTTATAG TAGAGTAT CGGCGA chr3L:8580263-8580383 88 1.81e-04 TGACCTTCGC AAGAGCAT ATAAAGTTCT chrX:14215962-14216082 109 1.81e-04 TATTTTGGGA AAGAGCAT TCTT chr3R:13407155-13407275 13 1.89e-04 TACCCTTGCT ACGGGTAT TTCCCTTTGT chr4:498578-498698 97 1.89e-04 tttacgagca acgggtat aaTGAATTAA chr3R:13429868-13429988 90 2.01e-04 GTGATTCGAC TAGGGTAG GTAAAATTGT chr2L:3550740-3550860 89 2.23e-04 AAACAGGTGA AAGGGAAT CCAGTCTTCG chr3L:18334384-18334504 51 2.23e-04 CTTATTGTCT AAGGGAAT ATATTTTTCT chr3L:10833337-10833457 61 2.23e-04 TTACGATTTA AAGGGAAT TAAAAACACA chr3R:8687384-8687504 80 2.62e-04 GTATTTGGTA TAGAGCAT TGGGTAGCCG chr4:252218-252338 10 2.62e-04 TTCAAGCCG AAGCGTAT ATACCCTTGC chrX:17521416-17521536 108 2.62e-04 ATTCCTATGT TAGAGCAT CTAGC chr2R:22246039-22246159 111 2.62e-04 CGATCTAGGC TAGAGCAT TC chr3R:21643784-21643904 5 2.62e-04 AAAC AAGGGCAG CTGGCCAGCC chrX:15816284-15816404 1 2.62e-04 . AAGGGCAG CGCACCGAAC chrX:17342149-17342269 98 3.14e-04 TCTTTCAAGA TAGCGTAT CTGAACTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17297054-17297174 1.9e-05 112_[+1] chr2R:21077875-21077995 1.9e-05 83_[+1]_29 chr2L:14457633-14457753 1.9e-05 93_[+1]_19 chr2R:14341805-14341925 1.9e-05 80_[+1]_32 chr3L:22883763-22883883 1.9e-05 107_[+1]_5 chr3L:7906613-7906733 1.9e-05 110_[+1]_2 chr2R:15846727-15846847 1.9e-05 71_[+1]_41 chr3R:16187876-16187996 1.9e-05 78_[+1]_34 chr3L:22273695-22273815 1.9e-05 66_[+1]_46 chr3R:5013656-5013776 1.9e-05 75_[+1]_37 chr3L:5850221-5850341 1.9e-05 63_[+1]_49 chrX:3043431-3043551 1.9e-05 40_[+1]_72 chr3R:29292041-29292161 1.9e-05 39_[+1]_73 chr2L:2459377-2459497 1.9e-05 33_[+1]_79 chr2L:19894981-19895101 3.8e-05 85_[+1]_27 chr3L:20977135-20977255 3.8e-05 97_[+1]_15 chr4:75394-75514 3.8e-05 61_[+1]_51 chr2R:6597359-6597479 3.8e-05 91_[+1]_21 chr3L:21044877-21044997 3.8e-05 111_[+1]_1 chrX:16208398-16208518 3.8e-05 86_[+1]_26 chr3R:4838373-4838493 3.8e-05 105_[+1]_7 chr2L:4627410-4627530 3.8e-05 84_[+1]_28 chr4:183476-183596 4.5e-05 23_[+1]_89 chr2R:14777595-14777715 5.3e-05 99_[+1]_13 chr2L:7135798-7135918 9.6e-05 93_[+1]_19 chr2R:15699680-15699800 9.6e-05 90_[+1]_22 chr2L:7621837-7621957 9.6e-05 99_[+1]_13 chr3R:29273184-29273304 9.6e-05 111_[+1]_1 chr3L:21380922-21381042 9.6e-05 100_[+1]_12 chr3L:14089655-14089775 9.6e-05 79_[+1]_33 chrX:17306518-17306638 0.0001 92_[+1]_20 chr3R:30816360-30816480 0.0001 107_[+1]_5 chr2L:19471802-19471922 0.00011 93_[+1]_19 chr2R:6234516-6234636 0.00011 80_[+1]_32 chrX:8450680-8450800 0.00016 107_[+1]_5 chr2L:1404224-1404344 0.00016 96_[+1]_16 chr3R:19824629-19824749 0.00016 65_[+1]_47 chr3L:13126156-13126276 0.00016 2_[+1]_110 chr3R:30745397-30745517 0.00016 83_[+1]_29 chrX:16690148-16690268 0.00016 106_[+1]_6 chr3L:8580263-8580383 0.00018 87_[+1]_25 chrX:14215962-14216082 0.00018 108_[+1]_4 chr3R:13407155-13407275 0.00019 12_[+1]_100 chr4:498578-498698 0.00019 96_[+1]_16 chr3R:13429868-13429988 0.0002 89_[+1]_23 chr2L:3550740-3550860 0.00022 88_[+1]_24 chr3L:18334384-18334504 0.00022 50_[+1]_62 chr3L:10833337-10833457 0.00022 60_[+1]_52 chr3R:8687384-8687504 0.00026 79_[+1]_33 chr4:252218-252338 0.00026 9_[+1]_103 chrX:17521416-17521536 0.00026 107_[+1]_5 chr2R:22246039-22246159 0.00026 110_[+1]_2 chr3R:21643784-21643904 0.00026 4_[+1]_108 chrX:15816284-15816404 0.00026 [+1]_112 chrX:17342149-17342269 0.00031 97_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAGGGTAT width=8 seqs=55 chrX:17297054-17297174 ( 113) AAGGGTAT 1 chr2R:21077875-21077995 ( 84) AAGGGTAT 1 chr2L:14457633-14457753 ( 94) AAGGGTAT 1 chr2R:14341805-14341925 ( 81) AAGGGTAT 1 chr3L:22883763-22883883 ( 108) AAGGGTAT 1 chr3L:7906613-7906733 ( 111) AAGGGTAT 1 chr2R:15846727-15846847 ( 72) AAGGGTAT 1 chr3R:16187876-16187996 ( 79) AAGGGTAT 1 chr3L:22273695-22273815 ( 67) AAGGGTAT 1 chr3R:5013656-5013776 ( 76) AAGGGTAT 1 chr3L:5850221-5850341 ( 64) AAGGGTAT 1 chrX:3043431-3043551 ( 41) AAGGGTAT 1 chr3R:29292041-29292161 ( 40) AAGGGTAT 1 chr2L:2459377-2459497 ( 34) AAGGGTAT 1 chr2L:19894981-19895101 ( 86) TAGGGTAT 1 chr3L:20977135-20977255 ( 98) TAGGGTAT 1 chr4:75394-75514 ( 62) TAGGGTAT 1 chr2R:6597359-6597479 ( 92) TAGGGTAT 1 chr3L:21044877-21044997 ( 112) TAGGGTAT 1 chrX:16208398-16208518 ( 87) TAGGGTAT 1 chr3R:4838373-4838493 ( 106) TAGGGTAT 1 chr2L:4627410-4627530 ( 85) TAGGGTAT 1 chr4:183476-183596 ( 24) AAGGGCAT 1 chr2R:14777595-14777715 ( 100) TAGGGCAT 1 chr2L:7135798-7135918 ( 94) AAGAGTAT 1 chr2R:15699680-15699800 ( 91) AAGAGTAT 1 chr2L:7621837-7621957 ( 100) AAGAGTAT 1 chr3R:29273184-29273304 ( 112) AAGAGTAT 1 chr3L:21380922-21381042 ( 101) AAGAGTAT 1 chr3L:14089655-14089775 ( 80) AAGAGTAT 1 chrX:17306518-17306638 ( 93) CAGGGTAT 1 chr3R:30816360-30816480 ( 108) CAGGGTAT 1 chr2L:19471802-19471922 ( 94) GAGGGTAT 1 chr2R:6234516-6234636 ( 81) GAGGGTAT 1 chrX:8450680-8450800 ( 108) TAGAGTAT 1 chr2L:1404224-1404344 ( 97) TAGAGTAT 1 chr3R:19824629-19824749 ( 66) TAGAGTAT 1 chr3L:13126156-13126276 ( 3) TAGAGTAT 1 chr3R:30745397-30745517 ( 84) TAGAGTAT 1 chrX:16690148-16690268 ( 107) TAGAGTAT 1 chr3L:8580263-8580383 ( 88) AAGAGCAT 1 chrX:14215962-14216082 ( 109) AAGAGCAT 1 chr3R:13407155-13407275 ( 13) ACGGGTAT 1 chr4:498578-498698 ( 97) ACGGGTAT 1 chr3R:13429868-13429988 ( 90) TAGGGTAG 1 chr2L:3550740-3550860 ( 89) AAGGGAAT 1 chr3L:18334384-18334504 ( 51) AAGGGAAT 1 chr3L:10833337-10833457 ( 61) AAGGGAAT 1 chr3R:8687384-8687504 ( 80) TAGAGCAT 1 chr4:252218-252338 ( 10) AAGCGTAT 1 chrX:17521416-17521536 ( 108) TAGAGCAT 1 chr2R:22246039-22246159 ( 111) TAGAGCAT 1 chr3R:21643784-21643904 ( 5) AAGGGCAG 1 chrX:15816284-15816404 ( 1) AAGGGCAG 1 chrX:17342149-17342269 ( 98) TAGCGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59032 E= 3.5e-008 69 -201 -208 5 146 -201 -1243 -1243 -1243 -1243 270 -1243 -18 -201 209 -1243 -1243 -1243 270 -1243 -268 16 -1243 116 152 -1243 -1243 -1243 -1243 -1243 -149 143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 3.5e-008 0.563636 0.036364 0.036364 0.363636 0.963636 0.036364 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.309091 0.036364 0.654545 0.000000 0.000000 0.000000 1.000000 0.000000 0.054545 0.163636 0.000000 0.781818 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.054545 0.945455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGGTAT MEME-1 regular expression -------------------------------------------------------------------------------- [AT]AG[GA]GTAT -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCCTTGC MEME-2 width = 8 sites = 17 llr = 187 E-value = 3.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::1:1: pos.-specific C :9aa::1a probability G :1::::6: matrix T ::::9a2: bits 2.8 ** * 2.5 *** * 2.2 *** * 1.9 *** * Relative 1.7 *** * Entropy 1.4 **** * * (15.9 bits) 1.1 ****** * 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ACCCTTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:664413-664533 105 3.07e-06 CCCACATTCA ACCCTTGC CCTTGCGA chr2L:3831823-3831943 11 3.07e-06 GACTTTCTAT ACCCTTGC ATGGGGGTAT chr4:252218-252338 20 3.07e-06 AAGCGTATAT ACCCTTGC AGGTATAAAC chr2L:22144805-22144925 44 3.07e-06 AAGTTTATAC ACCCTTGC AGTAATTAAA chr3R:13407155-13407275 4 3.07e-06 CTT ACCCTTGC TACGGGTATT chr3R:4476134-4476254 9 3.07e-06 GTTTGTGT ACCCTTGC AGACGGTCAA chr3R:13429868-13429988 38 3.07e-06 CAGCTCATAT ACCCTTGC AGATGATTAT chr3R:5063883-5064003 34 3.07e-06 AAGCAAATAT ACCCTTGC AGTTCGTATA chr4:818412-818532 12 3.07e-06 AAACGTATAC ACCCTTGC AGAAAATATG chrX:17306518-17306638 82 1.01e-05 GTTTGCGAAT ACCCTTTC TCGCAGGGTA chr2R:24083427-24083547 23 1.01e-05 GAATTCGGAT ACCCTTTC CCCTACCCCC chr3L:6837665-6837785 85 1.01e-05 ACAATAGTAA ACCCTTTC AAAACTTAAA chr3R:21643784-21643904 35 1.31e-05 ATAAGCAAAC ACCCTTCC AAAGGAAGGT chr3R:25448384-25448504 13 2.01e-05 ATTTGTGAAT ACCCTTAC AGAGAAAATT chr3R:29292041-29292161 28 2.01e-05 GCATTTTTAT ACCCTTAC AGAGAAGGGT chrX:11924820-11924940 32 2.63e-05 AATGGTCATT AGCCTTGC GATACAAGGT chr2L:19471802-19471922 12 2.63e-05 ATCCAGCATA ACCCATGC GCAATTACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:664413-664533 3.1e-06 104_[+2]_8 chr2L:3831823-3831943 3.1e-06 10_[+2]_102 chr4:252218-252338 3.1e-06 19_[+2]_93 chr2L:22144805-22144925 3.1e-06 43_[+2]_69 chr3R:13407155-13407275 3.1e-06 3_[+2]_109 chr3R:4476134-4476254 3.1e-06 8_[+2]_104 chr3R:13429868-13429988 3.1e-06 37_[+2]_75 chr3R:5063883-5064003 3.1e-06 33_[+2]_79 chr4:818412-818532 3.1e-06 11_[+2]_101 chrX:17306518-17306638 1e-05 81_[+2]_31 chr2R:24083427-24083547 1e-05 22_[+2]_90 chr3L:6837665-6837785 1e-05 84_[+2]_28 chr3R:21643784-21643904 1.3e-05 34_[+2]_78 chr3R:25448384-25448504 2e-05 12_[+2]_100 chr3R:29292041-29292161 2e-05 27_[+2]_85 chrX:11924820-11924940 2.6e-05 31_[+2]_81 chr2L:19471802-19471922 2.6e-05 11_[+2]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCCTTGC width=8 seqs=17 chr4:664413-664533 ( 105) ACCCTTGC 1 chr2L:3831823-3831943 ( 11) ACCCTTGC 1 chr4:252218-252338 ( 20) ACCCTTGC 1 chr2L:22144805-22144925 ( 44) ACCCTTGC 1 chr3R:13407155-13407275 ( 4) ACCCTTGC 1 chr3R:4476134-4476254 ( 9) ACCCTTGC 1 chr3R:13429868-13429988 ( 38) ACCCTTGC 1 chr3R:5063883-5064003 ( 34) ACCCTTGC 1 chr4:818412-818532 ( 12) ACCCTTGC 1 chrX:17306518-17306638 ( 82) ACCCTTTC 1 chr2R:24083427-24083547 ( 23) ACCCTTTC 1 chr3L:6837665-6837785 ( 85) ACCCTTTC 1 chr3R:21643784-21643904 ( 35) ACCCTTCC 1 chr3R:25448384-25448504 ( 13) ACCCTTAC 1 chr3R:29292041-29292161 ( 28) ACCCTTAC 1 chrX:11924820-11924940 ( 32) AGCCTTGC 1 chr2L:19471802-19471922 ( 12) ACCCATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 3.9e-007 152 -1073 -1073 -1073 -1073 268 -138 -1073 -1073 277 -1073 -1073 -1073 277 -1073 -1073 -257 -1073 -1073 142 -1073 -1073 -1073 151 -157 -132 208 -99 -1073 277 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.9e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 0.000000 1.000000 0.117647 0.058824 0.647059 0.176471 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCCTTGC MEME-2 regular expression -------------------------------------------------------------------------------- ACCCTTGC -------------------------------------------------------------------------------- Time 13.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GATTCGGC MEME-3 width = 8 sites = 17 llr = 175 E-value = 4.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8:1:::1 pos.-specific C :2::8:19 probability G 8:::1a9: matrix T 2:a91::: bits 2.8 * 2.5 *** 2.2 *** 1.9 * **** Relative 1.7 * **** Entropy 1.4 * * **** (14.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GATTCGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:1268377-1268497 25 3.33e-06 gtgatattat gattcggc tattactatt chr2L:21151029-21151149 52 3.33e-06 gtgatattat gattcggc tatttctatt chr2R:2309224-2309344 19 3.33e-06 gtgatattat gattcggc tattactatt chr2R:4186071-4186191 57 3.33e-06 gtgatattat gattcggc tatttctatt chr2R:6234516-6234636 93 3.33e-06 GGGTATATGA GATTCGGC TAACCGAAGC chr4:318907-319027 78 3.33e-06 gtgatgttat gattcggc tattactatt chr4:374353-374473 58 3.33e-06 tttgtgatat gattcggc tattactatt chr3R:16187876-16187996 91 4.73e-06 GGGTATTTTC GCTTCGGC GTGTCTGAAT chr4:664413-664533 81 9.65e-06 TGTAGCGTTT GCTTGGGC TGCGGGCCCA chr3R:5063883-5064003 10 9.65e-06 GGGAAGTTA GCTTGGGC AAGTCGAAGC chr2R:16387643-16387763 63 1.73e-05 ATTTACTAAG TATTCGGC ACGGGGTCAT chr2L:7621837-7621957 112 1.73e-05 GAGTATTAAA TATTCGGC A chr3L:17624333-17624453 4 1.73e-05 CAT TATTCGGC CTTTAAAATG chr3R:17888882-17889002 5 2.70e-05 TTTC GATTCGCC GAAGACTGTA chr3R:22719062-22719182 50 2.97e-05 AATTCGACTG GCTACGGC GACAAAACAC chr2L:22114580-22114700 29 3.77e-05 tatgtacata gatttggc tatttataat chr3L:20003233-20003353 79 4.56e-05 GAGCAGCAGT GATTCGGA AATGGAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:1268377-1268497 3.3e-06 24_[+3]_88 chr2L:21151029-21151149 3.3e-06 51_[+3]_61 chr2R:2309224-2309344 3.3e-06 18_[+3]_94 chr2R:4186071-4186191 3.3e-06 56_[+3]_56 chr2R:6234516-6234636 3.3e-06 92_[+3]_20 chr4:318907-319027 3.3e-06 77_[+3]_35 chr4:374353-374473 3.3e-06 57_[+3]_55 chr3R:16187876-16187996 4.7e-06 90_[+3]_22 chr4:664413-664533 9.7e-06 80_[+3]_32 chr3R:5063883-5064003 9.7e-06 9_[+3]_103 chr2R:16387643-16387763 1.7e-05 62_[+3]_50 chr2L:7621837-7621957 1.7e-05 111_[+3]_1 chr3L:17624333-17624453 1.7e-05 3_[+3]_109 chr3R:17888882-17889002 2.7e-05 4_[+3]_108 chr3R:22719062-22719182 3e-05 49_[+3]_63 chr2L:22114580-22114700 3.8e-05 28_[+3]_84 chr3L:20003233-20003353 4.6e-05 78_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATTCGGC width=8 seqs=17 chr4:1268377-1268497 ( 25) GATTCGGC 1 chr2L:21151029-21151149 ( 52) GATTCGGC 1 chr2R:2309224-2309344 ( 19) GATTCGGC 1 chr2R:4186071-4186191 ( 57) GATTCGGC 1 chr2R:6234516-6234636 ( 93) GATTCGGC 1 chr4:318907-319027 ( 78) GATTCGGC 1 chr4:374353-374473 ( 58) GATTCGGC 1 chr3R:16187876-16187996 ( 91) GCTTCGGC 1 chr4:664413-664533 ( 81) GCTTGGGC 1 chr3R:5063883-5064003 ( 10) GCTTGGGC 1 chr2R:16387643-16387763 ( 63) TATTCGGC 1 chr2L:7621837-7621957 ( 112) TATTCGGC 1 chr3L:17624333-17624453 ( 4) TATTCGGC 1 chr3R:17888882-17889002 ( 5) GATTCGCC 1 chr3R:22719062-22719182 ( 50) GCTACGGC 1 chr2L:22114580-22114700 ( 29) GATTTGGC 1 chr3L:20003233-20003353 ( 79) GATTCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 4.7e-002 -1073 -1073 242 -99 113 68 -1073 -1073 -1073 -1073 -1073 151 -257 -1073 -1073 142 -1073 249 -38 -257 -1073 -1073 270 -1073 -1073 -132 262 -1073 -257 268 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.7e-002 0.000000 0.000000 0.823529 0.176471 0.764706 0.235294 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.000000 0.941176 0.000000 0.823529 0.117647 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.058824 0.941176 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTCGGC MEME-3 regular expression -------------------------------------------------------------------------------- G[AC]TTCGGC -------------------------------------------------------------------------------- Time 20.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCAAKSC MEME-4 width = 8 sites = 15 llr = 157 E-value = 4.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::7a::: pos.-specific C ::92::39 probability G aa11:571 matrix T :::::5:: bits 2.8 ** 2.5 ** * 2.2 *** * 1.9 *** ** Relative 1.7 *** ** Entropy 1.4 *** * ** (15.1 bits) 1.1 *** **** 0.8 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCAATGC consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18929769-18929889 2 1.44e-06 A GGCAAGGC GAAGATTTAA chr3L:78458-78578 44 3.44e-06 ATTATTTCTT GGCAAGCC TGAAAGAAAA chr3R:13429868-13429988 19 3.44e-06 AGACATCTGC GGCAAGCC GCAGCTCATA chr2L:21151029-21151149 102 6.74e-06 ataacgttaa ggcaatgc aaaacaagaa chr2R:2309224-2309344 69 6.74e-06 ataacgttaa ggcaatgc aagacaagaa chr2R:4186071-4186191 106 6.74e-06 gtaacgttaa ggcaatgc aaaacaa chr2L:21572743-21572863 8 6.74e-06 acgttaa ggcaatgc aaaacaagaa chr4:374353-374473 108 6.74e-06 ataacattaa ggcaatgc taatc chr4:434429-434549 82 6.74e-06 ataacgttaa ggcaatgc aaaacaagaa chr3R:21643784-21643904 15 7.96e-06 AAGGGCAGCT GGCCAGCC GAATAAGCAA chr2R:11494383-11494503 102 1.74e-05 GAGTTCATTA GGGAAGGC AAAACATTTC chr3R:5024656-5024776 43 1.88e-05 TCGATCTATC GGCGATCC TCAGAGAATG chr2L:19787558-19787678 96 1.88e-05 TCCTGAAAGA GGCGATCC GTACAAATTG chr2R:18804935-18805055 100 1.95e-05 AGTTGCCGTT GGGCAGGC AATAAATTCG chr3L:383044-383164 2 2.92e-05 A GGCCAGGG GAACTATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18929769-18929889 1.4e-06 1_[+4]_111 chr3L:78458-78578 3.4e-06 43_[+4]_69 chr3R:13429868-13429988 3.4e-06 18_[+4]_94 chr2L:21151029-21151149 6.7e-06 101_[+4]_11 chr2R:2309224-2309344 6.7e-06 68_[+4]_44 chr2R:4186071-4186191 6.7e-06 105_[+4]_7 chr2L:21572743-21572863 6.7e-06 7_[+4]_105 chr4:374353-374473 6.7e-06 107_[+4]_5 chr4:434429-434549 6.7e-06 81_[+4]_31 chr3R:21643784-21643904 8e-06 14_[+4]_98 chr2R:11494383-11494503 1.7e-05 101_[+4]_11 chr3R:5024656-5024776 1.9e-05 42_[+4]_70 chr2L:19787558-19787678 1.9e-05 95_[+4]_17 chr2R:18804935-18805055 1.9e-05 99_[+4]_13 chr3L:383044-383164 2.9e-05 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAAKSC width=8 seqs=15 chr2L:18929769-18929889 ( 2) GGCAAGGC 1 chr3L:78458-78578 ( 44) GGCAAGCC 1 chr3R:13429868-13429988 ( 19) GGCAAGCC 1 chr2L:21151029-21151149 ( 102) GGCAATGC 1 chr2R:2309224-2309344 ( 69) GGCAATGC 1 chr2R:4186071-4186191 ( 106) GGCAATGC 1 chr2L:21572743-21572863 ( 8) GGCAATGC 1 chr4:374353-374473 ( 108) GGCAATGC 1 chr4:434429-434549 ( 82) GGCAATGC 1 chr3R:21643784-21643904 ( 15) GGCCAGCC 1 chr2R:11494383-11494503 ( 102) GGGAAGGC 1 chr3R:5024656-5024776 ( 43) GGCGATCC 1 chr2L:19787558-19787678 ( 96) GGCGATCC 1 chr2R:18804935-18805055 ( 100) GGGCAGGC 1 chr3L:383044-383164 ( 2) GGCCAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 4.1e-001 -1055 -1055 270 -1055 -1055 -1055 270 -1055 -1055 256 -20 -1055 93 45 -20 -1055 152 -1055 -1055 -1055 -1055 -1055 160 60 -1055 118 212 -1055 -1055 267 -120 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.1e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.666667 0.200000 0.133333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.466667 0.533333 0.000000 0.333333 0.666667 0.000000 0.000000 0.933333 0.066667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAAKSC MEME-4 regular expression -------------------------------------------------------------------------------- GGC[AC]A[TG][GC]C -------------------------------------------------------------------------------- Time 26.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CKCTGCGC MEME-5 width = 8 sites = 8 llr = 93 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:9::a:8 probability G :6::9:a: matrix T :41a1::3 bits 2.8 * ** 2.5 * ** 2.2 * ** 1.9 * * *** Relative 1.7 * * **** Entropy 1.4 ******** (16.8 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCTGCGC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18585992-18586112 110 5.87e-07 GGGTTCGCAT CGCTGCGC AGC chr3L:2504902-2505022 25 1.93e-06 AAAAACTGAC CTCTGCGC AAGATGCAGG chrX:16208398-16208518 62 1.93e-06 CAAAGATTTG CTCTGCGC AACCCATGAA chr3L:5850221-5850341 90 1.93e-06 CGTTAGTTCG CTCTGCGC TTTCCCTTTC chr2R:15846727-15846847 89 3.34e-06 TTTGTCAATT CGCTGCGT GCATCTAATG chr4:498578-498698 52 3.34e-06 aataaacttg cgctgcgt ttatgtctct chr3R:20846463-20846583 14 6.08e-06 AGATCAGATG CGCTTCGC TTAGAGCTTT chr2L:2459377-2459497 50 6.08e-06 ATTCAAACTT CGTTGCGC ATTCAACTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18585992-18586112 5.9e-07 109_[+5]_3 chr3L:2504902-2505022 1.9e-06 24_[+5]_88 chrX:16208398-16208518 1.9e-06 61_[+5]_51 chr3L:5850221-5850341 1.9e-06 89_[+5]_23 chr2R:15846727-15846847 3.3e-06 88_[+5]_24 chr4:498578-498698 3.3e-06 51_[+5]_61 chr3R:20846463-20846583 6.1e-06 13_[+5]_99 chr2L:2459377-2459497 6.1e-06 49_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKCTGCGC width=8 seqs=8 chrX:18585992-18586112 ( 110) CGCTGCGC 1 chr3L:2504902-2505022 ( 25) CTCTGCGC 1 chrX:16208398-16208518 ( 62) CTCTGCGC 1 chr3L:5850221-5850341 ( 90) CTCTGCGC 1 chr2R:15846727-15846847 ( 89) CGCTGCGT 1 chr4:498578-498698 ( 52) CGCTGCGT 1 chr3R:20846463-20846583 ( 14) CGCTTCGC 1 chr2L:2459377-2459497 ( 50) CGTTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.5e+002 -965 277 -965 -965 -965 -965 203 10 -965 258 -965 -149 -965 -965 -965 151 -965 -965 251 -149 -965 277 -965 -965 -965 -965 270 -965 -965 235 -965 -49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTGCGC MEME-5 regular expression -------------------------------------------------------------------------------- C[GT]CTGCG[CT] -------------------------------------------------------------------------------- Time 32.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28572831-28572951 3.80e-01 120 chr2R:19148454-19148574 2.53e-01 120 chrX:15816284-15816404 2.48e-03 2_[+4(6.20e-05)]_110 chr3R:21393460-21393580 7.58e-01 120 chrX:2980460-2980580 1.18e-01 120 chr4:434429-434549 1.56e-02 81_[+4(6.74e-06)]_31 chr4:374353-374473 2.66e-04 57_[+3(3.33e-06)]_42_[+4(6.74e-06)]_\ 5 chr2L:21572490-21572610 4.79e-01 120 chr2L:21572743-21572863 5.48e-03 7_[+4(6.74e-06)]_105 chrX:8617172-8617292 7.18e-01 120 chr3L:15200403-15200523 4.99e-01 120 chr2L:22114580-22114700 2.89e-01 28_[+3(3.77e-05)]_84 chr3R:15628157-15628277 4.74e-01 120 chrX:1183881-1184001 4.67e-01 120 chr3L:10959036-10959156 5.29e-01 120 chr2L:5558947-5559067 9.33e-01 120 chr3R:29259605-29259725 9.01e-01 120 chr3L:18017032-18017152 5.56e-01 120 chr3R:17951930-17952050 9.99e-01 120 chrX:8579236-8579356 7.22e-01 120 chr3R:29689985-29690105 7.88e-01 120 chr4:307082-307202 6.95e-02 120 chr3L:9026707-9026827 9.89e-01 120 chr3R:4780860-4780980 7.17e-01 120 chrX:16690148-16690268 4.22e-01 120 chr2R:15907971-15908091 6.65e-01 120 chr3L:19078593-19078713 8.78e-01 120 chr3L:2118231-2118351 7.85e-01 120 chr3L:18449830-18449950 6.18e-01 120 chr3L:18226843-18226963 3.90e-01 120 chr2R:9403297-9403417 4.70e-01 120 chr3L:8748450-8748570 9.71e-01 120 chr3R:6899061-6899181 8.40e-02 120 chrX:18618261-18618381 5.85e-01 120 chrX:18897417-18897537 7.12e-01 120 chr3R:17830667-17830787 1.00e+00 120 chr3L:14089655-14089775 3.68e-02 79_[+1(9.62e-05)]_33 chr3R:29549296-29549416 2.17e-01 120 chr2L:2459377-2459497 1.00e-03 33_[+1(1.88e-05)]_8_[+5(6.08e-06)]_\ 63 chr3L:4619251-4619371 8.27e-01 120 chr3R:21642773-21642893 6.87e-01 120 chr2R:22478139-22478259 5.69e-01 120 chr3R:29292041-29292161 2.40e-04 27_[+2(2.01e-05)]_4_[+1(1.88e-05)]_\ 37_[+1(9.62e-05)]_28 chr2R:14072118-14072238 5.03e-01 120 chrX:1256291-1256411 8.83e-01 120 chr3R:9235196-9235316 3.67e-01 120 chr3R:21643784-21643904 1.48e-04 14_[+4(7.96e-06)]_12_[+2(1.31e-05)]_\ 78 chr2L:2636727-2636847 7.81e-01 120 chrX:21282133-21282253 7.47e-02 120 chr3L:15035700-15035820 5.41e-01 120 chr3R:31300612-31300732 1.08e-01 106_[+4(6.14e-05)]_6 chr3L:18434804-18434924 4.28e-02 120 chr3L:18796538-18796658 7.17e-01 120 chr3R:30394036-30394156 5.67e-01 120 chr3R:22269952-22270072 6.04e-02 120 chr2R:8612192-8612312 8.89e-01 120 chr2R:14777595-14777715 6.87e-03 99_[+1(5.34e-05)]_13 chrX:13249293-13249413 1.45e-01 120 chr4:818412-818532 1.33e-02 11_[+2(3.07e-06)]_101 chr3R:19347825-19347945 9.39e-01 120 chr3R:16669954-16670074 4.61e-01 120 chr3R:5063883-5064003 1.46e-05 9_[+3(9.65e-06)]_16_[+2(3.07e-06)]_\ 79 chr2L:19787558-19787678 2.53e-02 95_[+4(1.88e-05)]_17 chr3L:6837665-6837785 9.60e-03 84_[+2(1.01e-05)]_28 chr4:318907-319027 1.60e-02 77_[+3(3.33e-06)]_35 chr3R:23036483-23036603 9.33e-01 120 chrX:7459096-7459216 2.73e-01 120 chr3L:18394122-18394242 8.64e-01 120 chrX:3043431-3043551 1.09e-02 40_[+1(1.88e-05)]_72 chr3L:21380922-21381042 2.71e-01 100_[+1(9.62e-05)]_12 chr2L:312744-312864 5.88e-01 120 chrX:6643487-6643607 1.11e-01 120 chr2L:14440215-14440335 9.96e-01 120 chr3L:18345118-18345238 2.51e-02 120 chr2L:7588192-7588312 4.69e-01 120 chr2R:13635085-13635205 3.04e-01 120 chr2L:16380502-16380622 5.13e-01 120 chr2L:5899808-5899928 9.81e-01 120 chr2L:4627410-4627530 1.83e-02 84_[+1(3.76e-05)]_28 chr2L:17615592-17615712 1.13e-01 120 chr2L:17220923-17221043 6.95e-01 120 chr3L:5850221-5850341 2.50e-05 63_[+1(1.88e-05)]_18_[+5(1.93e-06)]_\ 23 chr2R:6234516-6234636 4.06e-05 92_[+3(3.33e-06)]_20 chrX:4583103-4583223 5.02e-01 120 chr3R:25096671-25096791 5.96e-01 120 chr3R:5013656-5013776 2.37e-03 75_[+1(1.88e-05)]_37 chr4:498578-498698 6.87e-07 7_[+3(6.36e-05)]_36_[+5(3.34e-06)]_\ 61 chr2L:7089522-7089642 2.79e-01 120 chr2R:22246039-22246159 7.03e-02 120 chr4:239588-239708 8.22e-01 120 chr2R:7690240-7690360 3.42e-01 120 chr2R:4186071-4186191 3.53e-04 56_[+3(3.33e-06)]_41_[+4(6.74e-06)]_\ 7 chr3L:10833337-10833457 2.31e-01 120 chr2R:15725727-15725847 8.02e-01 120 chr3L:18258855-18258975 4.71e-01 120 chrX:12246415-12246535 9.14e-01 120 chr3R:28556111-28556231 6.99e-02 120 chr3R:30816360-30816480 4.56e-02 120 chr2L:20801512-20801632 9.72e-01 120 chr3L:17235162-17235282 8.73e-01 120 chr2R:15359462-15359582 9.20e-01 120 chr3L:22146975-22147095 9.99e-01 120 chr3L:17624333-17624453 1.35e-01 3_[+3(1.73e-05)]_109 chr3R:17888882-17889002 6.95e-03 4_[+3(2.70e-05)]_108 chr2R:6341951-6342071 5.55e-01 120 chr3L:21448825-21448945 9.87e-01 120 chr3R:4838373-4838493 4.00e-02 105_[+1(3.76e-05)]_7 chrX:7276060-7276180 1.26e-01 120 chr2R:14033038-14033158 1.44e-01 120 chr3R:4726969-4727089 3.18e-01 120 chr3R:23497391-23497511 1.39e-01 120 chr2R:15915851-15915971 9.91e-01 120 chr2L:22993918-22994038 6.74e-01 120 chrX:17521416-17521536 5.11e-02 120 chr2R:6553992-6554112 6.59e-02 120 chr2L:12002561-12002681 1.14e-01 120 chr3L:19776564-19776684 7.39e-01 120 chrX:12076400-12076520 2.81e-01 120 chr3L:20003233-20003353 1.18e-03 78_[+3(4.56e-05)]_34 chr3L:18334384-18334504 9.56e-02 120 chrX:17334202-17334322 2.63e-01 120 chrX:16208398-16208518 6.76e-07 28_[+4(2.92e-05)]_25_[+5(1.93e-06)]_\ 17_[+1(3.76e-05)]_26 chr2L:7850058-7850178 9.07e-01 120 chr2R:2309224-2309344 2.33e-04 18_[+3(3.33e-06)]_42_[+4(6.74e-06)]_\ 44 chr3R:4524524-4524644 3.14e-01 120 chr2L:18497345-18497465 2.99e-01 120 chr2R:20100683-20100803 1.78e-02 32_[+2(6.41e-05)]_80 chrX:17342149-17342269 9.92e-02 120 chr3R:13429868-13429988 4.31e-07 18_[+4(3.44e-06)]_11_[+2(3.07e-06)]_\ 75 chr3R:30745397-30745517 9.84e-02 120 chr3L:15323743-15323863 3.92e-02 41_[+5(4.78e-05)]_71 chr2L:19800084-19800204 3.44e-02 48_[+2(4.07e-05)]_64 chr2L:4185760-4185880 7.92e-01 120 chr2L:19011677-19011797 2.76e-02 120 chr3L:14569989-14570109 8.15e-01 120 chr2R:18804935-18805055 8.54e-03 99_[+4(1.95e-05)]_13 chr3L:15760606-15760726 1.54e-01 120 chrX:262995-263115 5.46e-02 120 chr3L:21797411-21797531 9.75e-01 120 chr2L:15409260-15409380 7.29e-01 120 chr2L:18929769-18929889 2.56e-02 1_[+4(1.44e-06)]_111 chrX:14215962-14216082 2.94e-02 120 chr3R:4476134-4476254 3.54e-03 8_[+2(3.07e-06)]_104 chr3L:22273695-22273815 5.38e-04 66_[+1(1.88e-05)]_46 chr3R:20846463-20846583 5.95e-04 13_[+5(6.08e-06)]_99 chr2R:24083427-24083547 4.15e-04 22_[+2(1.01e-05)]_90 chrX:292097-292217 6.76e-01 120 chr3R:13407155-13407275 2.78e-04 3_[+2(3.07e-06)]_109 chrX:14066015-14066135 4.41e-01 120 chr3L:10392998-10393118 5.28e-01 120 chr2L:18780746-18780866 6.52e-01 120 chr3L:78458-78578 2.89e-03 43_[+4(3.44e-06)]_69 chr3R:16187876-16187996 9.57e-06 78_[+1(1.88e-05)]_4_[+3(4.73e-06)]_\ 22 chr3L:21044877-21044997 1.58e-02 1_[+4(6.35e-05)]_102_[+1(3.76e-05)]_\ 1 chr3L:13099767-13099887 7.45e-01 120 chrX:19806273-19806393 6.11e-01 120 chr2L:18803999-18804119 9.84e-01 120 chr3L:13126156-13126276 1.33e-01 120 chr3R:10640011-10640131 1.09e-01 120 chr2R:14336630-14336750 3.49e-01 120 chr2R:15846727-15846847 1.71e-04 71_[+1(1.88e-05)]_9_[+5(3.34e-06)]_\ 24 chr3R:19824629-19824749 4.28e-03 120 chr3R:5024656-5024776 3.27e-02 42_[+4(1.88e-05)]_70 chr3R:15501732-15501852 9.93e-01 120 chr4:183476-183596 1.70e-02 23_[+1(4.55e-05)]_89 chr3L:454932-455052 2.05e-01 120 chr2L:1404224-1404344 3.04e-01 120 chr2L:3550740-3550860 8.83e-03 90_[+4(3.39e-05)]_22 chr2L:16374857-16374977 5.51e-01 120 chr2L:7912988-7913108 2.91e-01 120 chr2R:11494383-11494503 1.85e-03 101_[+4(1.74e-05)]_11 chr3L:22006215-22006335 2.78e-01 120 chr3L:7906613-7906733 5.93e-03 [+4(7.06e-05)]_102_[+1(1.88e-05)]_2 chr2L:19798443-19798563 8.01e-01 120 chr3L:22883763-22883883 4.79e-03 87_[+1(3.76e-05)]_12_[+1(1.88e-05)]_\ 5 chr2L:22144805-22144925 6.94e-03 43_[+2(3.07e-06)]_69 chr2L:13586763-13586883 5.30e-01 120 chr2R:4823475-4823595 1.12e-03 120 chr2R:6786433-6786553 9.48e-01 120 chr2R:11498915-11499035 5.68e-01 120 chr3L:22433954-22434074 3.09e-01 120 chr2R:20953216-20953336 7.85e-01 120 chr2L:21368632-21368752 8.53e-01 120 chr3R:25448384-25448504 3.53e-02 12_[+2(2.01e-05)]_100 chr3R:18026691-18026811 1.66e-01 120 chrX:3981836-3981956 5.31e-01 120 chr2L:19471802-19471922 1.63e-03 11_[+2(2.63e-05)]_101 chrX:7094694-7094814 3.80e-01 120 chrX:11924820-11924940 1.14e-04 31_[+2(2.63e-05)]_81 chr3L:4966889-4967009 8.73e-01 120 chr2R:14341805-14341925 2.37e-02 80_[+1(1.88e-05)]_32 chr3L:19603364-19603484 1.70e-01 120 chr3L:8580263-8580383 6.49e-02 120 chrX:17817670-17817790 8.71e-01 120 chr3L:18342052-18342172 5.50e-01 120 chr2L:7085672-7085792 9.99e-01 120 chr2L:14457633-14457753 7.51e-02 93_[+1(1.88e-05)]_19 chr3R:21507644-21507764 9.14e-01 120 chr3R:28630231-28630351 9.86e-02 120 chrX:17306518-17306638 2.85e-03 81_[+2(1.01e-05)]_31 chr2R:23730077-23730197 2.84e-02 120 chr2R:21077875-21077995 6.30e-02 83_[+1(1.88e-05)]_29 chr2R:5651862-5651982 2.90e-01 120 chr3R:22050566-22050686 3.79e-01 120 chr2L:5888487-5888607 8.79e-01 120 chr3R:29273184-29273304 3.98e-01 111_[+1(9.62e-05)]_1 chr3L:18364732-18364852 4.30e-01 120 chr2L:21151029-21151149 3.53e-04 51_[+3(3.33e-06)]_42_[+4(6.74e-06)]_\ 11 chr3L:15748695-15748815 5.19e-02 120 chr2L:14473148-14473268 2.89e-01 120 chr4:252218-252338 2.41e-04 19_[+2(3.07e-06)]_93 chr2L:7621837-7621957 3.96e-03 99_[+1(9.62e-05)]_4_[+3(1.73e-05)]_\ 1 chr2R:16387643-16387763 3.05e-02 62_[+3(1.73e-05)]_50 chr2R:20594495-20594615 3.77e-01 120 chrX:16760687-16760807 8.46e-01 120 chr2R:6597359-6597479 1.15e-01 91_[+1(3.76e-05)]_21 chr2R:11612065-11612185 5.04e-02 120 chr2R:6712746-6712866 8.02e-01 120 chr3R:15471884-15472004 2.40e-01 120 chr4:75394-75514 2.30e-02 61_[+1(3.76e-05)]_51 chr2L:3831823-3831943 1.30e-02 10_[+2(3.07e-06)]_102 chr2R:15699680-15699800 1.08e-02 90_[+1(9.62e-05)]_22 chrX:17297054-17297174 9.48e-03 112_[+1(1.88e-05)] chr3L:383044-383164 5.85e-02 1_[+4(2.92e-05)]_111 chrX:18262301-18262421 5.77e-01 120 chr2R:15095750-15095870 8.36e-01 120 chr2L:4998888-4999008 7.26e-03 120 chr3L:20977135-20977255 4.46e-02 97_[+1(3.76e-05)]_15 chr4:41757-41877 5.61e-01 120 chrX:8450680-8450800 2.17e-01 120 chr3R:22719062-22719182 7.34e-02 49_[+3(2.97e-05)]_63 chr3R:16875982-16876102 9.06e-01 120 chr2R:6609068-6609188 2.95e-01 120 chr2R:25010003-25010123 3.26e-01 120 chr2R:13896759-13896879 7.47e-02 120 chr2L:19894981-19895101 8.37e-03 72_[+1(3.76e-05)]_5_[+1(3.76e-05)]_\ 27 chr3L:6219094-6219214 6.27e-02 112_[+2(7.14e-05)] chr4:664413-664533 1.92e-05 16_[+2(4.07e-05)]_56_[+3(9.65e-06)]_\ 16_[+2(3.07e-06)]_8 chr3L:22175963-22176083 6.64e-02 120 chr3L:14985692-14985812 5.64e-01 120 chrX:9742228-9742348 3.23e-01 120 chr4:1268377-1268497 6.97e-03 24_[+3(3.33e-06)]_88 chr3L:2504902-2505022 6.54e-04 24_[+5(1.93e-06)]_88 chr3R:10679582-10679702 6.58e-01 120 chrX:18585992-18586112 5.23e-04 109_[+5(5.87e-07)]_3 chr2L:12486022-12486142 7.79e-02 120 chr2R:11949199-11949319 1.43e-01 120 chr2L:7135798-7135918 3.10e-01 93_[+1(9.62e-05)]_19 chr3R:8687384-8687504 2.43e-02 120 chr3L:5840996-5841116 6.00e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************