******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/D1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:11579012-11579132 1.0000 120 chr2L:21754119-21754239 1.0000 120 chr4:55975-56095 1.0000 120 chr3R:4970432-4970552 1.0000 120 chr2L:3806793-3806913 1.0000 120 chr3R:8922303-8922423 1.0000 120 chr2L:18513556-18513676 1.0000 120 chr2L:13500547-13500667 1.0000 120 chr2L:16267653-16267773 1.0000 120 chr4:798323-798443 1.0000 120 chr4:133043-133163 1.0000 120 chr3L:17407232-17407352 1.0000 120 chr3L:18799921-18800041 1.0000 120 chr3R:21938022-21938142 1.0000 120 chrX:10789410-10789530 1.0000 120 chr3L:16496542-16496662 1.0000 120 chr3L:16358015-16358135 1.0000 120 chr4:1022301-1022421 1.0000 120 chrX:3099690-3099810 1.0000 120 chr3R:6335059-6335179 1.0000 120 chrX:9202781-9202901 1.0000 120 chr3L:14437799-14437919 1.0000 120 chrX:9685377-9685497 1.0000 120 chr3R:16279707-16279827 1.0000 120 chr4:89815-89935 1.0000 120 chr3L:17591220-17591340 1.0000 120 chr3L:3090330-3090450 1.0000 120 chr3L:3071552-3071672 1.0000 120 chr3L:22982147-22982267 1.0000 120 chr3L:16741789-16741909 1.0000 120 chr3R:19152814-19152934 1.0000 120 chr3L:21052685-21052805 1.0000 120 chr3L:18082500-18082620 1.0000 120 chr2L:20175182-20175302 1.0000 120 chr2R:11194021-11194141 1.0000 120 chr2L:12547127-12547247 1.0000 120 chr3L:14609960-14610080 1.0000 120 chrX:14874944-14875064 1.0000 120 chr3L:5836351-5836471 1.0000 120 chr3R:6683783-6683903 1.0000 120 chr2R:6171221-6171341 1.0000 120 chr3R:3750808-3750928 1.0000 120 chr3L:16042070-16042190 1.0000 120 chr2L:10721659-10721779 1.0000 120 chr2R:12611964-12612084 1.0000 120 chr3L:14464609-14464729 1.0000 120 chrX:21036069-21036189 1.0000 120 chr2L:21396868-21396988 1.0000 120 chr3R:12383951-12384071 1.0000 120 chr2L:16852664-16852784 1.0000 120 chr3L:18075120-18075240 1.0000 120 chr2L:4346146-4346266 1.0000 120 chr3L:18846583-18846703 1.0000 120 chr2L:9521878-9521998 1.0000 120 chr2R:15485600-15485720 1.0000 120 chrX:185291-185411 1.0000 120 chr3L:9359936-9360056 1.0000 120 chr2L:11172095-11172215 1.0000 120 chr4:129424-129544 1.0000 120 chr3R:26472477-26472597 1.0000 120 chr4:196621-196741 1.0000 120 chr3L:11487056-11487176 1.0000 120 chrX:16372015-16372135 1.0000 120 chr2R:8992384-8992504 1.0000 120 chr2L:162355-162475 1.0000 120 chr3R:19239254-19239374 1.0000 120 chr3L:12703598-12703718 1.0000 120 chr4:211061-211181 1.0000 120 chr3R:21069849-21069969 1.0000 120 chr2L:9198172-9198292 1.0000 120 chr3R:16620080-16620200 1.0000 120 chr3R:9049624-9049744 1.0000 120 chr2R:18193431-18193551 1.0000 120 chr4:83272-83392 1.0000 120 chr3R:25529408-25529528 1.0000 120 chr2L:14479499-14479619 1.0000 120 chr3L:20221055-20221175 1.0000 120 chr4:490251-490371 1.0000 120 chr2L:10055993-10056113 1.0000 120 chr2L:14665133-14665253 1.0000 120 chr3R:25518668-25518788 1.0000 120 chr3R:19566420-19566540 1.0000 120 chr3L:4322338-4322458 1.0000 120 chr4:1251111-1251231 1.0000 120 chr3R:14653750-14653870 1.0000 120 chrX:17517759-17517879 1.0000 120 chr4:853402-853522 1.0000 120 chr4:70574-70694 1.0000 120 chr3R:18027558-18027678 1.0000 120 chr3L:17652881-17653001 1.0000 120 chr2L:20824896-20825016 1.0000 120 chr3R:19569355-19569475 1.0000 120 chr3L:21008614-21008734 1.0000 120 chr3R:26129875-26129995 1.0000 120 chr3R:22564935-22565055 1.0000 120 chr4:554708-554828 1.0000 120 chr2L:16326976-16327096 1.0000 120 chr2L:13547316-13547436 1.0000 120 chr3L:17487722-17487842 1.0000 120 chr3L:21262396-21262516 1.0000 120 chr2R:19419868-19419988 1.0000 120 chr3L:12833989-12834109 1.0000 120 chrX:17455983-17456103 1.0000 120 chr3R:12660970-12661090 1.0000 120 chr2L:20851889-20852009 1.0000 120 chr2R:14884997-14885117 1.0000 120 chr2R:11930066-11930186 1.0000 120 chr3R:15438245-15438365 1.0000 120 chrX:6051357-6051477 1.0000 120 chr3L:20910270-20910390 1.0000 120 chr2R:17616488-17616608 1.0000 120 chrX:6780328-6780448 1.0000 120 chr2L:16532546-16532666 1.0000 120 chr2L:19915367-19915487 1.0000 120 chr2L:10671609-10671729 1.0000 120 chr3L:13101028-13101148 1.0000 120 chr2L:15368579-15368699 1.0000 120 chr3L:16362292-16362412 1.0000 120 chr2L:9207842-9207962 1.0000 120 chr3R:6706492-6706612 1.0000 120 chr3L:10545157-10545277 1.0000 120 chr3R:16233090-16233210 1.0000 120 chr3L:22820033-22820153 1.0000 120 chr4:850556-850676 1.0000 120 chr3L:5356501-5356621 1.0000 120 chr3L:132094-132214 1.0000 120 chr2L:16842014-16842134 1.0000 120 chr3R:7981497-7981617 1.0000 120 chr2R:10108715-10108835 1.0000 120 chrX:8872772-8872892 1.0000 120 chr3R:21310278-21310398 1.0000 120 chr2L:20898469-20898589 1.0000 120 chr2R:25255317-25255437 1.0000 120 chr3R:25459387-25459507 1.0000 120 chr2R:10569674-10569794 1.0000 120 chr2R:6034452-6034572 1.0000 120 chr2L:3657110-3657230 1.0000 120 chr3L:13255834-13255954 1.0000 120 chr3L:18888448-18888568 1.0000 120 chr2L:11155994-11156114 1.0000 120 chr3L:15187941-15188061 1.0000 120 chr3L:12008057-12008177 1.0000 120 chr2R:12536375-12536495 1.0000 120 chr3R:19324374-19324494 1.0000 120 chr2L:16859756-16859876 1.0000 120 chr3L:8395060-8395180 1.0000 120 chr3R:25080292-25080412 1.0000 120 chr3L:14294285-14294405 1.0000 120 chr2L:2888331-2888451 1.0000 120 chr3L:2409440-2409560 1.0000 120 chr2L:14421521-14421641 1.0000 120 chr3L:16875559-16875679 1.0000 120 chrX:12757273-12757393 1.0000 120 chr2L:18319694-18319814 1.0000 120 chr2L:11068596-11068716 1.0000 120 chr3L:16884181-16884301 1.0000 120 chr2L:717897-718017 1.0000 120 chr4:175326-175446 1.0000 120 chr3R:7326278-7326398 1.0000 120 chr2L:9540164-9540284 1.0000 120 chr3R:10527500-10527620 1.0000 120 chr3L:18167305-18167425 1.0000 120 chr3R:4186727-4186847 1.0000 120 chr3R:13848499-13848619 1.0000 120 chr3L:8058886-8059006 1.0000 120 chr3L:20621257-20621377 1.0000 120 chr2R:13453553-13453673 1.0000 120 chr3L:20168283-20168403 1.0000 120 chr3L:11036135-11036255 1.0000 120 chr3R:9068420-9068540 1.0000 120 chr2L:10389362-10389482 1.0000 120 chr2L:21624481-21624601 1.0000 120 chrX:19160796-19160916 1.0000 120 chr3R:10120145-10120265 1.0000 120 chr2R:21199569-21199689 1.0000 120 chr3R:32047254-32047374 1.0000 120 chr3L:9497806-9497926 1.0000 120 chrX:127671-127791 1.0000 120 chr2R:7765210-7765330 1.0000 120 chr3R:25623989-25624109 1.0000 120 chr2R:19728994-19729114 1.0000 120 chr3L:17849465-17849585 1.0000 120 chr3L:13918908-13919028 1.0000 120 chr3L:21202013-21202133 1.0000 120 chr3R:29273188-29273308 1.0000 120 chr3L:21007369-21007489 1.0000 120 chr3L:13997030-13997150 1.0000 120 chr3L:20453652-20453772 1.0000 120 chrX:16813511-16813631 1.0000 120 chr3L:7837456-7837576 1.0000 120 chr3L:16470276-16470396 1.0000 120 chr3R:31961483-31961603 1.0000 120 chr3L:17669646-17669766 1.0000 120 chr3R:9068665-9068785 1.0000 120 chr3R:8233116-8233236 1.0000 120 chr2L:15096893-15097013 1.0000 120 chr3L:15505060-15505180 1.0000 120 chr3R:14847960-14848080 1.0000 120 chr2L:13268373-13268493 1.0000 120 chr2L:7084440-7084560 1.0000 120 chr4:90015-90135 1.0000 120 chr2L:7200236-7200356 1.0000 120 chr3L:16751779-16751899 1.0000 120 chr4:797072-797192 1.0000 120 chr3L:15808823-15808943 1.0000 120 chr2R:21497949-21498069 1.0000 120 chr4:844653-844773 1.0000 120 chr2L:16587779-16587899 1.0000 120 chr3R:11665623-11665743 1.0000 120 chr3L:14648832-14648952 1.0000 120 chr3R:16978071-16978191 1.0000 120 chr2R:18924921-18925041 1.0000 120 chr2R:6169186-6169306 1.0000 120 chr2R:6167369-6167489 1.0000 120 chrX:12207715-12207835 1.0000 120 chrX:16941069-16941189 1.0000 120 chr2L:21632026-21632146 1.0000 120 chr2L:9386647-9386767 1.0000 120 chr3L:8043790-8043910 1.0000 120 chr2R:13430535-13430655 1.0000 120 chrX:11520479-11520599 1.0000 120 chr3L:14235906-14236026 1.0000 120 chr3L:3947429-3947549 1.0000 120 chr2R:15011471-15011591 1.0000 120 chrX:3343809-3343929 1.0000 120 chr2L:15035281-15035401 1.0000 120 chr3R:29904036-29904156 1.0000 120 chrX:14098354-14098474 1.0000 120 chr2R:7774783-7774903 1.0000 120 chr2R:8665349-8665469 1.0000 120 chr2R:21474586-21474706 1.0000 120 chr3R:22043737-22043857 1.0000 120 chr3L:109101-109221 1.0000 120 chr2L:7968239-7968359 1.0000 120 chr4:980453-980573 1.0000 120 chr2R:15145537-15145657 1.0000 120 chr3R:17449555-17449675 1.0000 120 chr3L:22826395-22826515 1.0000 120 chr2R:8394374-8394494 1.0000 120 chrX:3720726-3720846 1.0000 120 chr2R:15698152-15698272 1.0000 120 chr3L:1586103-1586223 1.0000 120 chr2L:3480512-3480632 1.0000 120 chrX:8747793-8747913 1.0000 120 chr2R:7024650-7024770 1.0000 120 chr3R:13833603-13833723 1.0000 120 chr3R:25094400-25094520 1.0000 120 chr2L:65967-66087 1.0000 120 chr3L:14301016-14301136 1.0000 120 chr3R:20254396-20254516 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_D1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/D1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.347 C 0.152 G 0.154 T 0.347 Background letter frequencies (from file dataset with add-one prior applied): A 0.347 C 0.152 G 0.154 T 0.347 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CSCCGCMC MEME-1 width = 8 sites = 12 llr = 132 E-value = 4.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:23::4: pos.-specific C 8778:a6a probability G :32:a::: matrix T :::::::: bits 2.7 ** * 2.4 ** * 2.2 ** * 1.9 ** ** * Relative 1.6 ** *** * Entropy 1.4 ******** (15.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCGCCC consensus G A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:980453-980573 80 2.89e-07 caactttttg ccccgccc tctctaaccc chr2L:2888331-2888451 39 5.81e-07 ATACAAATCG CGCCGCCC AACCGAATAT chrX:14098354-14098474 10 1.53e-06 GCCGCGTTC CCGCGCCC CACACTGAGA chrX:16813511-16813631 68 1.53e-06 ATCTCGATTT CCGCGCCC CTTCTCCAGT chr2R:8992384-8992504 23 2.20e-06 CGTGTAAATT CGCCGCAC AACAGATGGT chr2L:15035281-15035401 38 2.86e-06 AATTTTAAGT CCCAGCCC ATCGCAATAA chr2L:10389362-10389482 31 3.81e-06 CCAACACTTG CCACGCCC ACTTTTAGGA chr3R:25094400-25094520 39 4.47e-06 TCATGTTCCG ACCCGCCC ACAATTCATA chr2L:21754119-21754239 23 8.65e-06 AAATTTTTCT CCCAGCAC TTCtgcatgt chrX:9685377-9685497 70 1.15e-05 TCACCGATTG CCACGCAC TAAATTTCTA chr3R:4186727-4186847 96 1.52e-05 CGGGAAACTC CGCAGCAC ATCTGACTTC chr3L:14301016-14301136 15 2.04e-05 TTCCAACTCT AGCCGCAC AGTGGAGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:980453-980573 2.9e-07 79_[+1]_33 chr2L:2888331-2888451 5.8e-07 38_[+1]_74 chrX:14098354-14098474 1.5e-06 9_[+1]_103 chrX:16813511-16813631 1.5e-06 67_[+1]_45 chr2R:8992384-8992504 2.2e-06 22_[+1]_90 chr2L:15035281-15035401 2.9e-06 37_[+1]_75 chr2L:10389362-10389482 3.8e-06 30_[+1]_82 chr3R:25094400-25094520 4.5e-06 38_[+1]_74 chr2L:21754119-21754239 8.6e-06 22_[+1]_90 chrX:9685377-9685497 1.1e-05 69_[+1]_43 chr3R:4186727-4186847 1.5e-05 95_[+1]_17 chr3L:14301016-14301136 2e-05 14_[+1]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCCGCMC width=8 seqs=12 chr4:980453-980573 ( 80) CCCCGCCC 1 chr2L:2888331-2888451 ( 39) CGCCGCCC 1 chrX:14098354-14098474 ( 10) CCGCGCCC 1 chrX:16813511-16813631 ( 68) CCGCGCCC 1 chr2R:8992384-8992504 ( 23) CGCCGCAC 1 chr2L:15035281-15035401 ( 38) CCCAGCCC 1 chr2L:10389362-10389482 ( 31) CCACGCCC 1 chr3R:25094400-25094520 ( 39) ACCCGCCC 1 chr2L:21754119-21754239 ( 23) CCCAGCAC 1 chrX:9685377-9685497 ( 70) CCACGCAC 1 chr3R:4186727-4186847 ( 96) CGCAGCAC 1 chr3L:14301016-14301136 ( 15) AGCCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.3e-001 -105 245 -1023 -1023 -1023 213 111 -1023 -105 213 11 -1023 -47 230 -1023 -1023 -1023 -1023 270 -1023 -1023 271 -1023 -1023 27 194 -1023 -1023 -1023 271 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.3e-001 0.166667 0.833333 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.166667 0.666667 0.166667 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.583333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCGCMC MEME-1 regular expression -------------------------------------------------------------------------------- C[CG]C[CA]GC[CA]C -------------------------------------------------------------------------------- Time 7.60 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGCAGC MEME-2 width = 8 sites = 2 llr = 28 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C aa::a::a probability G ::aa::a: matrix T :::::::: bits 2.7 ***** ** 2.4 ***** ** 2.2 ***** ** 1.9 ***** ** Relative 1.6 ******** Entropy 1.4 ******** (20.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14421521-14421641 75 6.76e-07 CCAACAAACA CCGGCAGC AGCAGCCCAT chr3R:25518668-25518788 21 6.76e-07 AATACGAAAA CCGGCAGC GAACTATACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14421521-14421641 6.8e-07 74_[+2]_38 chr3R:25518668-25518788 6.8e-07 20_[+2]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGCAGC width=8 seqs=2 chr2L:14421521-14421641 ( 75) CCGGCAGC 1 chr3R:25518668-25518788 ( 21) CCGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.2e+003 -765 271 -765 -765 -765 271 -765 -765 -765 -765 269 -765 -765 -765 269 -765 -765 271 -765 -765 152 -765 -765 -765 -765 -765 269 -765 -765 271 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.2e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCAGC MEME-2 regular expression -------------------------------------------------------------------------------- CCGGCAGC -------------------------------------------------------------------------------- Time 13.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCAAAA MEME-3 width = 8 sites = 6 llr = 71 E-value = 8.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::aaaa pos.-specific C :aaa:::: probability G a::::::: matrix T :::::::: bits 2.7 **** 2.4 **** 2.2 **** 1.9 **** Relative 1.6 ******** Entropy 1.4 ******** (17.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3343809-3343929 71 7.84e-06 GCTGCACTCA GCCCAAAA GTATGCTGCA chr3L:11036135-11036255 75 7.84e-06 ATCAATATGT GCCCAAAA GTATGCAACC chr2R:25255317-25255437 49 7.84e-06 AACGATCTGT GCCCAAAA GCAATCAAAG chr3L:16496542-16496662 99 7.84e-06 ATTTTGGAAT GCCCAAAA GTATGCAGCA chr3R:8922303-8922423 64 7.84e-06 TCAATGTACT GCCCAAAA AGCGATACAA chr2L:21754119-21754239 80 7.84e-06 TTGAATATTT GCCCAAAA ACAGCAACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3343809-3343929 7.8e-06 70_[+3]_42 chr3L:11036135-11036255 7.8e-06 74_[+3]_38 chr2R:25255317-25255437 7.8e-06 48_[+3]_64 chr3L:16496542-16496662 7.8e-06 98_[+3]_14 chr3R:8922303-8922423 7.8e-06 63_[+3]_49 chr2L:21754119-21754239 7.8e-06 79_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCAAAA width=8 seqs=6 chrX:3343809-3343929 ( 71) GCCCAAAA 1 chr3L:11036135-11036255 ( 75) GCCCAAAA 1 chr2R:25255317-25255437 ( 49) GCCCAAAA 1 chr3L:16496542-16496662 ( 99) GCCCAAAA 1 chr3R:8922303-8922423 ( 64) GCCCAAAA 1 chr2L:21754119-21754239 ( 80) GCCCAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 8.9e+003 -923 -923 270 -923 -923 271 -923 -923 -923 271 -923 -923 -923 271 -923 -923 153 -923 -923 -923 153 -923 -923 -923 153 -923 -923 -923 153 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCAAAA MEME-3 regular expression -------------------------------------------------------------------------------- GCCCAAAA -------------------------------------------------------------------------------- Time 20.18 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCGCC MEME-4 width = 8 sites = 2 llr = 28 E-value = 9.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:aa probability G a:aa:a:: matrix T :a:::::: bits 2.7 * ****** 2.4 * ****** 2.2 * ****** 1.9 * ****** Relative 1.6 ******** Entropy 1.4 ******** (20.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11665623-11665743 53 6.85e-07 ATCGTAGGTA GTGGCGCC AATGTGCAAT chr2R:13453553-13453673 40 6.85e-07 ACATTACCTG GTGGCGCC ATCTAGGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11665623-11665743 6.9e-07 52_[+4]_60 chr2R:13453553-13453673 6.9e-07 39_[+4]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCGCC width=8 seqs=2 chr3R:11665623-11665743 ( 53) GTGGCGCC 1 chr2R:13453553-13453673 ( 40) GTGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 9.9e+003 -765 -765 269 -765 -765 -765 -765 152 -765 -765 269 -765 -765 -765 269 -765 -765 271 -765 -765 -765 -765 269 -765 -765 271 -765 -765 -765 271 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 regular expression -------------------------------------------------------------------------------- GTGGCGCC -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGCKG MEME-5 width = 8 sites = 2 llr = 28 E-value = 2.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:::a:: probability G a:aaa:5a matrix T ::::::5: bits 2.7 ****** * 2.4 ****** * 2.2 ****** * 1.9 ****** * Relative 1.6 ****** * Entropy 1.4 ****** * (20.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGGCGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3343809-3343929 24 3.08e-07 TTATTTCTGC GCGGGCGG TTCGAAAATC chr2L:21396868-21396988 61 1.00e-06 TTCTATGAAT GCGGGCTG TCATTTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3343809-3343929 3.1e-07 23_[+5]_89 chr2L:21396868-21396988 1e-06 60_[+5]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGCKG width=8 seqs=2 chrX:3343809-3343929 ( 24) GCGGGCGG 1 chr2L:21396868-21396988 ( 61) GCGGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 2.8e+004 -765 -765 269 -765 -765 271 -765 -765 -765 -765 269 -765 -765 -765 269 -765 -765 -765 269 -765 -765 271 -765 -765 -765 -765 169 52 -765 -765 269 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCKG MEME-5 regular expression -------------------------------------------------------------------------------- GCGGGC[GT]G -------------------------------------------------------------------------------- Time 31.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11579012-11579132 9.94e-01 120 chr2L:21754119-21754239 2.23e-04 22_[+1(8.65e-06)]_49_[+3(7.84e-06)]_\ 33 chr4:55975-56095 4.82e-01 120 chr3R:4970432-4970552 9.30e-01 120 chr2L:3806793-3806913 9.69e-01 120 chr3R:8922303-8922423 8.89e-02 63_[+3(7.84e-06)]_49 chr2L:18513556-18513676 5.94e-01 120 chr2L:13500547-13500667 7.66e-01 120 chr2L:16267653-16267773 1.01e-02 120 chr4:798323-798443 1.00e+00 120 chr4:133043-133163 9.90e-01 120 chr3L:17407232-17407352 9.23e-01 120 chr3L:18799921-18800041 7.89e-01 120 chr3R:21938022-21938142 2.97e-01 120 chrX:10789410-10789530 7.65e-01 120 chr3L:16496542-16496662 5.67e-02 98_[+3(7.84e-06)]_14 chr3L:16358015-16358135 9.32e-01 120 chr4:1022301-1022421 8.37e-01 120 chrX:3099690-3099810 2.16e-01 120 chr3R:6335059-6335179 2.43e-02 120 chrX:9202781-9202901 9.12e-01 120 chr3L:14437799-14437919 5.66e-01 120 chrX:9685377-9685497 4.60e-03 69_[+1(1.15e-05)]_43 chr3R:16279707-16279827 5.06e-01 120 chr4:89815-89935 5.14e-02 21_[+4(2.85e-05)]_91 chr3L:17591220-17591340 3.62e-02 120 chr3L:3090330-3090450 1.00e+00 120 chr3L:3071552-3071672 9.46e-01 120 chr3L:22982147-22982267 7.89e-01 120 chr3L:16741789-16741909 5.02e-01 120 chr3R:19152814-19152934 5.29e-01 120 chr3L:21052685-21052805 9.99e-01 120 chr3L:18082500-18082620 7.10e-01 120 chr2L:20175182-20175302 5.55e-03 120 chr2R:11194021-11194141 7.16e-01 120 chr2L:12547127-12547247 5.19e-01 120 chr3L:14609960-14610080 2.26e-01 120 chrX:14874944-14875064 9.85e-01 120 chr3L:5836351-5836471 3.99e-02 15_[+2(7.76e-05)]_97 chr3R:6683783-6683903 2.65e-01 120 chr2R:6171221-6171341 8.47e-01 120 chr3R:3750808-3750928 6.29e-01 120 chr3L:16042070-16042190 8.48e-01 120 chr2L:10721659-10721779 2.02e-02 120 chr2R:12611964-12612084 8.63e-01 120 chr3L:14464609-14464729 8.31e-01 120 chrX:21036069-21036189 7.51e-02 35_[+3(6.69e-05)]_77 chr2L:21396868-21396988 9.58e-05 60_[+5(1.00e-06)]_25_[+2(2.82e-05)]_\ 19 chr3R:12383951-12384071 8.75e-01 120 chr2L:16852664-16852784 7.17e-01 120 chr3L:18075120-18075240 5.93e-01 120 chr2L:4346146-4346266 5.83e-01 120 chr3L:18846583-18846703 1.35e-01 120 chr2L:9521878-9521998 8.54e-01 120 chr2R:15485600-15485720 2.73e-02 120 chrX:185291-185411 6.48e-01 120 chr3L:9359936-9360056 9.85e-01 120 chr2L:11172095-11172215 3.22e-01 120 chr4:129424-129544 8.90e-01 120 chr3R:26472477-26472597 9.30e-01 120 chr4:196621-196741 9.41e-01 120 chr3L:11487056-11487176 1.00e+00 120 chrX:16372015-16372135 2.16e-01 120 chr2R:8992384-8992504 2.50e-04 22_[+1(2.20e-06)]_77_[+4(2.85e-05)]_\ 5 chr2L:162355-162475 1.00e+00 120 chr3R:19239254-19239374 4.59e-01 120 chr3L:12703598-12703718 9.62e-01 120 chr4:211061-211181 7.51e-01 120 chr3R:21069849-21069969 8.54e-01 120 chr2L:9198172-9198292 2.05e-01 120 chr3R:16620080-16620200 9.65e-01 120 chr3R:9049624-9049744 2.52e-01 120 chr2R:18193431-18193551 9.85e-01 120 chr4:83272-83392 4.19e-01 120 chr3R:25529408-25529528 7.66e-02 40_[+1(5.01e-05)]_72 chr2L:14479499-14479619 8.74e-02 120 chr3L:20221055-20221175 3.30e-02 63_[+3(6.69e-05)]_49 chr4:490251-490371 7.73e-03 85_[+5(4.07e-05)]_27 chr2L:10055993-10056113 3.06e-01 120 chr2L:14665133-14665253 7.49e-02 120 chr3R:25518668-25518788 1.90e-03 20_[+2(6.76e-07)]_92 chr3R:19566420-19566540 7.23e-01 120 chr3L:4322338-4322458 9.88e-01 120 chr4:1251111-1251231 6.86e-01 120 chr3R:14653750-14653870 6.33e-01 120 chrX:17517759-17517879 9.43e-01 120 chr4:853402-853522 5.28e-02 120 chr4:70574-70694 2.12e-01 120 chr3R:18027558-18027678 1.00e+00 120 chr3L:17652881-17653001 9.82e-01 120 chr2L:20824896-20825016 4.51e-01 120 chr3R:19569355-19569475 6.94e-02 71_[+2(7.76e-05)]_41 chr3L:21008614-21008734 9.91e-01 120 chr3R:26129875-26129995 6.72e-01 120 chr3R:22564935-22565055 8.83e-01 120 chr4:554708-554828 9.34e-01 120 chr2L:16326976-16327096 3.24e-03 120 chr2L:13547316-13547436 1.41e-05 79_[+5(1.39e-05)]_33 chr3L:17487722-17487842 4.03e-01 120 chr3L:21262396-21262516 3.61e-01 120 chr2R:19419868-19419988 2.23e-02 120 chr3L:12833989-12834109 3.16e-01 120 chrX:17455983-17456103 1.26e-02 53_[+3(6.69e-05)]_59 chr3R:12660970-12661090 5.04e-01 120 chr2L:20851889-20852009 3.70e-01 120 chr2R:14884997-14885117 9.99e-01 120 chr2R:11930066-11930186 6.39e-01 120 chr3R:15438245-15438365 8.64e-01 120 chrX:6051357-6051477 6.91e-01 120 chr3L:20910270-20910390 8.36e-01 120 chr2R:17616488-17616608 9.98e-01 120 chrX:6780328-6780448 4.91e-01 120 chr2L:16532546-16532666 6.24e-01 120 chr2L:19915367-19915487 7.64e-03 120 chr2L:10671609-10671729 4.40e-01 120 chr3L:13101028-13101148 9.97e-01 120 chr2L:15368579-15368699 8.37e-01 120 chr3L:16362292-16362412 1.00e+00 120 chr2L:9207842-9207962 2.11e-02 29_[+5(1.39e-05)]_83 chr3R:6706492-6706612 9.98e-01 120 chr3L:10545157-10545277 9.42e-01 120 chr3R:16233090-16233210 9.37e-01 120 chr3L:22820033-22820153 9.84e-01 120 chr4:850556-850676 9.70e-01 120 chr3L:5356501-5356621 9.83e-01 120 chr3L:132094-132214 3.39e-01 120 chr2L:16842014-16842134 9.58e-01 120 chr3R:7981497-7981617 6.04e-01 120 chr2R:10108715-10108835 1.00e+00 120 chrX:8872772-8872892 1.00e+00 120 chr3R:21310278-21310398 1.00e+00 120 chr2L:20898469-20898589 9.61e-01 120 chr2R:25255317-25255437 2.80e-02 48_[+3(7.84e-06)]_64 chr3R:25459387-25459507 9.82e-01 120 chr2R:10569674-10569794 6.61e-01 120 chr2R:6034452-6034572 9.78e-01 120 chr2L:3657110-3657230 9.99e-01 120 chr3L:13255834-13255954 2.02e-02 120 chr3L:18888448-18888568 9.91e-01 120 chr2L:11155994-11156114 5.30e-01 120 chr3L:15187941-15188061 9.59e-01 120 chr3L:12008057-12008177 3.24e-01 120 chr2R:12536375-12536495 8.76e-01 120 chr3R:19324374-19324494 5.92e-01 120 chr2L:16859756-16859876 2.87e-02 120 chr3L:8395060-8395180 2.83e-02 120 chr3R:25080292-25080412 1.15e-01 120 chr3L:14294285-14294405 2.01e-02 120 chr2L:2888331-2888451 5.51e-06 38_[+1(5.81e-07)]_74 chr3L:2409440-2409560 5.26e-02 52_[+4(2.85e-05)]_60 chr2L:14421521-14421641 1.74e-06 57_[+2(7.76e-05)]_9_[+2(6.76e-07)]_\ [+1(3.02e-05)]_30 chr3L:16875559-16875679 6.11e-01 120 chrX:12757273-12757393 9.68e-01 120 chr2L:18319694-18319814 5.14e-02 120 chr2L:11068596-11068716 9.71e-01 120 chr3L:16884181-16884301 2.74e-01 120 chr2L:717897-718017 9.05e-01 120 chr4:175326-175446 4.37e-01 120 chr3R:7326278-7326398 9.17e-01 120 chr2L:9540164-9540284 9.58e-01 120 chr3R:10527500-10527620 1.22e-01 11_[+2(7.76e-05)]_101 chr3L:18167305-18167425 8.33e-01 120 chr3R:4186727-4186847 1.24e-02 95_[+1(1.52e-05)]_17 chr3R:13848499-13848619 3.36e-02 70_[+5(4.07e-05)]_42 chr3L:8058886-8059006 8.94e-01 120 chr3L:20621257-20621377 7.84e-01 120 chr2R:13453553-13453673 1.23e-03 39_[+4(6.85e-07)]_73 chr3L:20168283-20168403 7.73e-01 120 chr3L:11036135-11036255 8.40e-02 74_[+3(7.84e-06)]_38 chr3R:9068420-9068540 2.39e-01 120 chr2L:10389362-10389482 6.53e-03 30_[+1(3.81e-06)]_82 chr2L:21624481-21624601 1.28e-02 83_[+2(7.76e-05)]_29 chrX:19160796-19160916 9.75e-01 120 chr3R:10120145-10120265 9.90e-01 120 chr2R:21199569-21199689 1.67e-01 120 chr3R:32047254-32047374 7.97e-01 120 chr3L:9497806-9497926 1.00e+00 120 chrX:127671-127791 9.29e-01 120 chr2R:7765210-7765330 9.66e-01 120 chr3R:25623989-25624109 6.32e-01 120 chr2R:19728994-19729114 8.99e-01 120 chr3L:17849465-17849585 8.42e-01 120 chr3L:13918908-13919028 5.54e-01 120 chr3L:21202013-21202133 7.04e-01 120 chr3R:29273188-29273308 8.21e-01 120 chr3L:21007369-21007489 3.20e-02 120 chr3L:13997030-13997150 1.00e+00 120 chr3L:20453652-20453772 9.96e-01 120 chrX:16813511-16813631 1.77e-03 67_[+1(1.53e-06)]_45 chr3L:7837456-7837576 9.51e-01 120 chr3L:16470276-16470396 7.64e-01 120 chr3R:31961483-31961603 6.73e-02 120 chr3L:17669646-17669766 4.94e-01 120 chr3R:9068665-9068785 6.45e-01 120 chr3R:8233116-8233236 6.32e-01 120 chr2L:15096893-15097013 7.69e-01 120 chr3L:15505060-15505180 4.71e-01 120 chr3R:14847960-14848080 8.42e-01 120 chr2L:13268373-13268493 9.48e-01 120 chr2L:7084440-7084560 6.33e-01 120 chr4:90015-90135 6.54e-01 120 chr2L:7200236-7200356 9.90e-01 120 chr3L:16751779-16751899 1.00e+00 120 chr4:797072-797192 1.92e-02 120 chr3L:15808823-15808943 8.24e-01 120 chr2R:21497949-21498069 7.35e-04 68_[+4(7.84e-05)]_19_[+4(2.85e-05)]_\ 17 chr4:844653-844773 1.02e-01 120 chr2L:16587779-16587899 1.75e-01 88_[+5(7.93e-05)]_24 chr3R:11665623-11665743 5.15e-03 52_[+4(6.85e-07)]_60 chr3L:14648832-14648952 9.36e-01 120 chr3R:16978071-16978191 6.68e-01 120 chr2R:18924921-18925041 5.12e-02 120 chr2R:6169186-6169306 7.80e-01 120 chr2R:6167369-6167489 9.91e-01 120 chrX:12207715-12207835 6.35e-01 120 chrX:16941069-16941189 9.99e-01 120 chr2L:21632026-21632146 1.72e-03 98_[+2(7.76e-05)]_14 chr2L:9386647-9386767 2.47e-01 120 chr3L:8043790-8043910 8.53e-01 120 chr2R:13430535-13430655 9.76e-01 120 chrX:11520479-11520599 1.04e-01 120 chr3L:14235906-14236026 7.68e-01 120 chr3L:3947429-3947549 3.40e-01 120 chr2R:15011471-15011591 1.33e-02 120 chrX:3343809-3343929 8.51e-07 23_[+5(3.08e-07)]_39_[+3(7.84e-06)]_\ 42 chr2L:15035281-15035401 2.58e-03 37_[+1(2.86e-06)]_75 chr3R:29904036-29904156 2.35e-01 120 chrX:14098354-14098474 3.27e-04 9_[+1(1.53e-06)]_103 chr2R:7774783-7774903 7.31e-02 120 chr2R:8665349-8665469 7.96e-01 120 chr2R:21474586-21474706 5.20e-01 120 chr3R:22043737-22043857 3.33e-02 120 chr3L:109101-109221 4.98e-03 63_[+2(7.76e-05)]_49 chr2L:7968239-7968359 1.00e+00 120 chr4:980453-980573 8.86e-05 79_[+1(2.89e-07)]_33 chr2R:15145537-15145657 2.14e-01 120 chr3R:17449555-17449675 1.47e-02 120 chr3L:22826395-22826515 4.79e-01 120 chr2R:8394374-8394494 2.21e-01 120 chrX:3720726-3720846 1.17e-01 120 chr2R:15698152-15698272 9.77e-01 120 chr3L:1586103-1586223 5.86e-01 120 chr2L:3480512-3480632 8.96e-01 120 chrX:8747793-8747913 9.86e-01 120 chr2R:7024650-7024770 1.00e+00 120 chr3R:13833603-13833723 4.48e-01 120 chr3R:25094400-25094520 1.15e-04 38_[+1(4.47e-06)]_74 chr2L:65967-66087 6.71e-01 120 chr3L:14301016-14301136 1.96e-02 14_[+1(2.04e-05)]_98 chr3R:20254396-20254516 4.66e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************