******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/D.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:19937632-19937752 1.0000 120 chr3R:17603113-17603233 1.0000 120 chr3L:16017667-16017787 1.0000 120 chr3R:21466131-21466251 1.0000 120 chr3R:8180153-8180273 1.0000 120 chrX:9763814-9763934 1.0000 120 chr2R:8250311-8250431 1.0000 120 chr3R:21654594-21654714 1.0000 120 chr3R:23890617-23890737 1.0000 120 chr3L:20795379-20795499 1.0000 120 chr3L:20687907-20688027 1.0000 120 chr2R:13225942-13226062 1.0000 120 chr2R:11304944-11305064 1.0000 120 chr3R:8689777-8689897 1.0000 120 chr3L:12454199-12454319 1.0000 120 chr3L:20644259-20644379 1.0000 120 chrX:18287710-18287830 1.0000 120 chr2L:14461808-14461928 1.0000 120 chr3L:13412352-13412472 1.0000 120 chr3L:613292-613412 1.0000 120 chr2R:17504163-17504283 1.0000 120 chr2R:6672972-6673092 1.0000 120 chr3R:30198590-30198710 1.0000 120 chr3R:22026313-22026433 1.0000 120 chr3R:11883261-11883381 1.0000 120 chr2R:11787136-11787256 1.0000 120 chr2R:24060795-24060915 1.0000 120 chr3L:11065517-11065637 1.0000 120 chr2L:5399003-5399123 1.0000 120 chr3R:8210269-8210389 1.0000 120 chr2L:10385244-10385364 1.0000 120 chr3L:10998841-10998961 1.0000 120 chr2R:13506642-13506762 1.0000 120 chr3R:19171766-19171886 1.0000 120 chr2L:2181657-2181777 1.0000 120 chrX:18863436-18863556 1.0000 120 chr2R:15356832-15356952 1.0000 120 chr3L:245223-245343 1.0000 120 chr3L:349486-349606 1.0000 120 chr2R:18173951-18174071 1.0000 120 chr2R:21558571-21558691 1.0000 120 chr2L:4384444-4384564 1.0000 120 chr3R:12319112-12319232 1.0000 120 chr3L:1456487-1456607 1.0000 120 chr3R:6647403-6647523 1.0000 120 chr3R:21360607-21360727 1.0000 120 chr2R:19267719-19267839 1.0000 120 chr3R:20285033-20285153 1.0000 120 chr2R:15936896-15937016 1.0000 120 chr2R:14620150-14620270 1.0000 120 chr3L:14952535-14952655 1.0000 120 chr2R:22888240-22888360 1.0000 120 chrX:6746941-6747061 1.0000 120 chr3L:9718574-9718694 1.0000 120 chrX:587951-588071 1.0000 120 chr2R:9703685-9703805 1.0000 120 chr2L:6949823-6949943 1.0000 120 chr2L:19199627-19199747 1.0000 120 chr3L:8341239-8341359 1.0000 120 chr3R:19360012-19360132 1.0000 120 chr3R:8967127-8967247 1.0000 120 chr2R:11979382-11979502 1.0000 120 chr3L:22070975-22071095 1.0000 120 chr3R:16342688-16342808 1.0000 120 chr3L:19805557-19805677 1.0000 120 chr3R:29286607-29286727 1.0000 120 chr2L:8822438-8822558 1.0000 120 chr3R:29295354-29295474 1.0000 120 chr2L:7112375-7112495 1.0000 120 chr3L:4623306-4623426 1.0000 120 chr3R:8284373-8284493 1.0000 120 chr3R:24049892-24050012 1.0000 120 chr2R:13825171-13825291 1.0000 120 chr2L:19577998-19578118 1.0000 120 chr3L:21788039-21788159 1.0000 120 chr3R:13752668-13752788 1.0000 120 chr2R:20054464-20054584 1.0000 120 chr3L:18749614-18749734 1.0000 120 chr2L:15323326-15323446 1.0000 120 chr3L:377008-377128 1.0000 120 chr3R:4344374-4344494 1.0000 120 chr2R:6572604-6572724 1.0000 120 chr3L:6324686-6324806 1.0000 120 chr2L:9612095-9612215 1.0000 120 chr3R:29293610-29293730 1.0000 120 chr2L:11455299-11455419 1.0000 120 chr3L:15807614-15807734 1.0000 120 chr3R:30475359-30475479 1.0000 120 chr2L:5890684-5890804 1.0000 120 chr2L:4464531-4464651 1.0000 120 chr3L:15785477-15785597 1.0000 120 chr3R:25476501-25476621 1.0000 120 chr3R:4354179-4354299 1.0000 120 chr2R:17002819-17002939 1.0000 120 chr3L:18306906-18307026 1.0000 120 chr3L:298046-298166 1.0000 120 chr2L:16444249-16444369 1.0000 120 chr2R:12515594-12515714 1.0000 120 chr3R:4713647-4713767 1.0000 120 chr3R:11363724-11363844 1.0000 120 chr3R:23828377-23828497 1.0000 120 chr3R:4434965-4435085 1.0000 120 chrX:7245929-7246049 1.0000 120 chr3R:5017021-5017141 1.0000 120 chr3L:14950500-14950620 1.0000 120 chr3R:29282410-29282530 1.0000 120 chr2L:12611809-12611929 1.0000 120 chr2L:11349793-11349913 1.0000 120 chr2L:13771479-13771599 1.0000 120 chr3L:11413418-11413538 1.0000 120 chr3R:23118779-23118899 1.0000 120 chr2R:9405261-9405381 1.0000 120 chr3R:8662294-8662414 1.0000 120 chr2R:6669514-6669634 1.0000 120 chr3L:2591430-2591550 1.0000 120 chr3R:23301363-23301483 1.0000 120 chr3R:15233984-15234104 1.0000 120 chr3R:15578417-15578537 1.0000 120 chr2R:9702208-9702328 1.0000 120 chr3R:7473416-7473536 1.0000 120 chr3L:4137291-4137411 1.0000 120 chr3L:12719563-12719683 1.0000 120 chrX:3847274-3847394 1.0000 120 chr2L:1947247-1947367 1.0000 120 chr2R:18709348-18709468 1.0000 120 chr2R:21283006-21283126 1.0000 120 chr3R:29516942-29517062 1.0000 120 chr3R:24162058-24162178 1.0000 120 chr2L:10222165-10222285 1.0000 120 chr2R:11555988-11556108 1.0000 120 chr3R:29306449-29306569 1.0000 120 chr2L:15475162-15475282 1.0000 120 chr3R:27855630-27855750 1.0000 120 chr3L:697347-697467 1.0000 120 chr2L:3633453-3633573 1.0000 120 chr2R:6638826-6638946 1.0000 120 chr3L:3073999-3074119 1.0000 120 chr2L:8153467-8153587 1.0000 120 chr2L:12670538-12670658 1.0000 120 chr2L:157027-157147 1.0000 120 chr3R:9754250-9754370 1.0000 120 chr2L:4457477-4457597 1.0000 120 chr2L:19338084-19338204 1.0000 120 chr3L:273029-273149 1.0000 120 chr3R:14681656-14681776 1.0000 120 chr3R:31615650-31615770 1.0000 120 chr3R:25632930-25633050 1.0000 120 chr3R:28821415-28821535 1.0000 120 chr3R:15350562-15350682 1.0000 120 chr2L:6924107-6924227 1.0000 120 chr2L:8839217-8839337 1.0000 120 chr3L:11404125-11404245 1.0000 120 chr2L:6456542-6456662 1.0000 120 chr2L:9701589-9701709 1.0000 120 chr2R:24513840-24513960 1.0000 120 chr3L:11259912-11260032 1.0000 120 chr2L:4839488-4839608 1.0000 120 chr3L:5563946-5564066 1.0000 120 chr3R:24917486-24917606 1.0000 120 chr3L:10189317-10189437 1.0000 120 chr2L:19339934-19340054 1.0000 120 chr2R:18677488-18677608 1.0000 120 chr2R:9594842-9594962 1.0000 120 chr2L:12704139-12704259 1.0000 120 chr3L:51011-51131 1.0000 120 chr2R:13507903-13508023 1.0000 120 chr3R:11355555-11355675 1.0000 120 chr3R:29714476-29714596 1.0000 120 chr2R:18211987-18212107 1.0000 120 chr3R:17092770-17092890 1.0000 120 chr2L:8789214-8789334 1.0000 120 chr3R:28809554-28809674 1.0000 120 chr3L:13407498-13407618 1.0000 120 chr2R:11090782-11090902 1.0000 120 chr3L:17353335-17353455 1.0000 120 chr3L:11434272-11434392 1.0000 120 chr3L:13043738-13043858 1.0000 120 chr2R:12757902-12758022 1.0000 120 chr3R:26056873-26056993 1.0000 120 chr2L:12048605-12048725 1.0000 120 chr2L:16444449-16444569 1.0000 120 chr2L:7295520-7295640 1.0000 120 chr3R:29546547-29546667 1.0000 120 chr3R:8681081-8681201 1.0000 120 chr3L:14650135-14650255 1.0000 120 chr2R:16999603-16999723 1.0000 120 chr3R:26024229-26024349 1.0000 120 chr3R:16470272-16470392 1.0000 120 chr2L:10271840-10271960 1.0000 120 chrX:586130-586250 1.0000 120 chr2R:19438110-19438230 1.0000 120 chr2L:10001023-10001143 1.0000 120 chr2R:11537715-11537835 1.0000 120 chr3R:21642160-21642280 1.0000 120 chr3L:14980201-14980321 1.0000 120 chr2L:12730777-12730897 1.0000 120 chr3R:21413190-21413310 1.0000 120 chr2L:14253127-14253247 1.0000 120 chr3R:8825079-8825199 1.0000 120 chr3R:8313462-8313582 1.0000 120 chr3R:29150524-29150644 1.0000 120 chr3R:31958494-31958614 1.0000 120 chrX:417289-417409 1.0000 120 chr2R:11736774-11736894 1.0000 120 chrX:5998061-5998181 1.0000 120 chr3R:15226172-15226292 1.0000 120 chr3L:16134170-16134290 1.0000 120 chr2L:12676407-12676527 1.0000 120 chr2R:10894730-10894850 1.0000 120 chr2L:16225077-16225197 1.0000 120 chr2L:11338053-11338173 1.0000 120 chr2R:24603009-24603129 1.0000 120 chr3R:29289475-29289595 1.0000 120 chrX:8689658-8689778 1.0000 120 chr2L:8092931-8093051 1.0000 120 chrX:9688939-9689059 1.0000 120 chr3R:9764261-9764381 1.0000 120 chr2R:19276696-19276816 1.0000 120 chr2L:5392107-5392227 1.0000 120 chr3R:29994574-29994694 1.0000 120 chr3R:24056989-24057109 1.0000 120 chr3R:8806777-8806897 1.0000 120 chr3L:16018858-16018978 1.0000 120 chr3R:21458586-21458706 1.0000 120 chr2L:2770473-2770593 1.0000 120 chr2L:3854642-3854762 1.0000 120 chr2R:24803101-24803221 1.0000 120 chr3R:13899866-13899986 1.0000 120 chr3R:5473117-5473237 1.0000 120 chr3L:4599920-4600040 1.0000 120 chr2R:23038049-23038169 1.0000 120 chr2L:15744122-15744242 1.0000 120 chr2R:11537501-11537621 1.0000 120 chr2R:21715658-21715778 1.0000 120 chr2R:20048822-20048942 1.0000 120 chr2L:11452740-11452860 1.0000 120 chr2L:18800909-18801029 1.0000 120 chr3L:18012966-18013086 1.0000 120 chr2L:5955996-5956116 1.0000 120 chr2R:19840840-19840960 1.0000 120 chr2L:19883349-19883469 1.0000 120 chr3R:29088585-29088705 1.0000 120 chr2L:6390625-6390745 1.0000 120 chr3L:13485793-13485913 1.0000 120 chr3R:22463986-22464106 1.0000 120 chr3R:29697980-29698100 1.0000 120 chr2L:15482935-15483055 1.0000 120 chr3L:15561375-15561495 1.0000 120 chr3R:12382715-12382835 1.0000 120 chr2L:4597719-4597839 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_D/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/D.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.251 C 0.252 G 0.252 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.251 C 0.252 G 0.252 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACAATGGM MEME-1 width = 8 sites = 48 llr = 406 E-value = 3.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:aa2::3 pos.-specific C :a::::25 probability G :::::782 matrix T ::::83:: bits 2.0 **** 1.8 **** 1.6 **** 1.4 ***** Relative 1.2 ******* Entropy 1.0 ******* (12.2 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAATGGC consensus TCA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29697980-29698100 103 1.56e-05 GCTCGAGTGG ACAATGGC CGGCACAAAG chr2R:19276696-19276816 70 1.56e-05 TGTCGGCTAG ACAATGGC TAGACAACAA chr3R:8284373-8284493 76 1.56e-05 GGACAATGGA ACAATGGC GAGTCCTTTG chr3R:20285033-20285153 44 1.56e-05 ATAAAAAGCA ACAATGGC AACAATAAAG chrX:9763814-9763934 98 1.56e-05 ATCCAACAGC ACAATGGC CGTGCGGTCG chr3R:21466131-21466251 48 1.56e-05 GGCCATACCA ACAATGGC CCTGGAGGCC chr3L:16017667-16017787 17 1.56e-05 TCCGGCTGCA ACAATGGC ATCGTTGTCC chr3R:17603113-17603233 4 1.56e-05 CAC ACAATGGC AAGTGCCATC chr2L:11338053-11338173 7 3.11e-05 GACTTT ACAATGGA ACGACCGTAA chr3L:14650135-14650255 55 3.11e-05 TGAAACCATA ACAATGGA ATTCAAAGGG chr3L:11434272-11434392 55 3.11e-05 ATTGAGTAAA ACAATGGA TCGGTTTTCC chr3L:18749614-18749734 107 3.11e-05 CTGCGAACTG ACAATGGA GGAGAC chr3L:349486-349606 76 3.11e-05 CAGCGGTCGA ACAATGGA CATCCCAGTG chr3R:21413190-21413310 111 4.66e-05 GACATCCAGC ACAATGGG TA chr2L:4457477-4457597 66 4.66e-05 CAGAGTCAAT ACAATGGG TTACAACGGG chr2L:11349793-11349913 57 4.66e-05 AGTTGCCCAA ACAATGGG CAAAGACGAC chr3R:29293610-29293730 90 4.66e-05 ACTGGGACAC ACAATGGG CGTGGCCCTG chr2L:2181657-2181777 38 4.66e-05 CCCTCGGGCA ACAATGGG TAATTGTAAG chr3L:20687907-20688027 43 4.66e-05 TCAAAGCAAA ACAATGGG CAAATTTGTC chr2L:5392107-5392227 34 6.17e-05 CAGGACGAGA ACAATTGC AGGGTTTGTT chr2R:18677488-18677608 35 6.17e-05 TTGAGCCTAG ACAATTGC ATTTCCTGCC chr2R:6638826-6638946 49 6.17e-05 TGCCGCAGGT ACAATTGC CACCAATCGC chr3R:29306449-29306569 21 6.17e-05 TCAATTGCAC ACAATTGC GGACTCGAGT chr3L:6324686-6324806 22 6.17e-05 GTACACACAC ACAATTGC CTGCTGTCCC chr2R:15356832-15356952 80 6.17e-05 AGCAGCAACA ACAATTGC AGGTGCCCCT chr3R:8210269-8210389 43 6.17e-05 TCAGCCGGTC ACAATTGC CATTGTCTGA chr3R:8180153-8180273 56 6.17e-05 TGTAGTCCCA ACAATTGC ATTGTCACAA chrX:417289-417409 68 7.72e-05 GTCCACGAGA ACAATGCC ATTTGGGACC chr3L:21788039-21788159 104 7.72e-05 GGGACTGCTG ACAatgcc caatgctcg chr3R:29282410-29282530 72 9.33e-05 CAATTTTCGC ACAAAGGC CAAAGGATGT chr2L:5890684-5890804 23 9.33e-05 TTCAATCGGA ACAAAGGC ACCGCAGGAT chr3L:19805557-19805677 58 9.33e-05 CGCTTCCCCC ACAAAGGC GGCAACATCG chrX:18287710-18287830 41 9.33e-05 TGCCAGCGGG ACAAAGGC GGTACTCACA chr2R:19937632-19937752 5 9.33e-05 GCCA ACAAAGgc agcaacagca chr3R:22463986-22464106 91 1.08e-04 CAAGATTATC ACAATTGA ATTTAACGAG chr3L:4623306-4623426 96 1.08e-04 AGAGCGATGA ACAATTGA GTTTTCTACT chr2R:13825171-13825291 44 1.23e-04 TTGCAGTTGG ACAATTGG GCAGTCCGGC chr2R:24803101-24803221 55 1.39e-04 CAAAGCCAGC ACAATGCA ACAAGTGTTG chrX:3847274-3847394 10 1.39e-04 CAGCCGACG ACAATGCA TTAGAATAGT chr3R:8967127-8967247 13 1.39e-04 caaacaacag acaatgca aaatgcaatt chr2R:11736774-11736894 69 1.55e-04 GTTAAAGGCA ACAAAGGA TCGCCCTGCA chr2L:12670538-12670658 5 1.55e-04 GAGC ACAAAGGA TAAAGGATAT chr3R:8689777-8689897 100 1.70e-04 TCAAATGAGG ACAATGCG GCAGGGACTC chr3L:20795379-20795499 96 1.70e-04 GAAACGGCCA ACAATGCG TTTTGCAAGG chr2L:15475162-15475282 3 1.86e-04 AA ACAAAGGG CGGAAGACTT chr2L:14461808-14461928 84 2.33e-04 GTCAAACGAA ACAAAGCC CAAACTAAAG chr2R:19840840-19840960 18 2.48e-04 TGGTATCCAG ACAATTCA CACAAGAAAT chr3R:22026313-22026433 85 2.78e-04 TATCTGTAAG ACAATTCG AACATTAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29697980-29698100 1.6e-05 102_[+1]_10 chr2R:19276696-19276816 1.6e-05 69_[+1]_43 chr3R:8284373-8284493 1.6e-05 75_[+1]_37 chr3R:20285033-20285153 1.6e-05 43_[+1]_69 chrX:9763814-9763934 1.6e-05 97_[+1]_15 chr3R:21466131-21466251 1.6e-05 47_[+1]_65 chr3L:16017667-16017787 1.6e-05 16_[+1]_96 chr3R:17603113-17603233 1.6e-05 3_[+1]_109 chr2L:11338053-11338173 3.1e-05 6_[+1]_106 chr3L:14650135-14650255 3.1e-05 54_[+1]_58 chr3L:11434272-11434392 3.1e-05 54_[+1]_58 chr3L:18749614-18749734 3.1e-05 106_[+1]_6 chr3L:349486-349606 3.1e-05 75_[+1]_37 chr3R:21413190-21413310 4.7e-05 110_[+1]_2 chr2L:4457477-4457597 4.7e-05 65_[+1]_47 chr2L:11349793-11349913 4.7e-05 56_[+1]_56 chr3R:29293610-29293730 4.7e-05 89_[+1]_23 chr2L:2181657-2181777 4.7e-05 37_[+1]_75 chr3L:20687907-20688027 4.7e-05 42_[+1]_70 chr2L:5392107-5392227 6.2e-05 33_[+1]_79 chr2R:18677488-18677608 6.2e-05 34_[+1]_78 chr2R:6638826-6638946 6.2e-05 48_[+1]_64 chr3R:29306449-29306569 6.2e-05 20_[+1]_92 chr3L:6324686-6324806 6.2e-05 21_[+1]_91 chr2R:15356832-15356952 6.2e-05 79_[+1]_33 chr3R:8210269-8210389 6.2e-05 42_[+1]_70 chr3R:8180153-8180273 6.2e-05 55_[+1]_57 chrX:417289-417409 7.7e-05 67_[+1]_45 chr3L:21788039-21788159 7.7e-05 103_[+1]_9 chr3R:29282410-29282530 9.3e-05 71_[+1]_41 chr2L:5890684-5890804 9.3e-05 22_[+1]_90 chr3L:19805557-19805677 9.3e-05 57_[+1]_55 chrX:18287710-18287830 9.3e-05 40_[+1]_72 chr2R:19937632-19937752 9.3e-05 4_[+1]_108 chr3R:22463986-22464106 0.00011 90_[+1]_22 chr3L:4623306-4623426 0.00011 95_[+1]_17 chr2R:13825171-13825291 0.00012 43_[+1]_69 chr2R:24803101-24803221 0.00014 54_[+1]_58 chrX:3847274-3847394 0.00014 9_[+1]_103 chr3R:8967127-8967247 0.00014 12_[+1]_100 chr2R:11736774-11736894 0.00015 68_[+1]_44 chr2L:12670538-12670658 0.00015 4_[+1]_108 chr3R:8689777-8689897 0.00017 99_[+1]_13 chr3L:20795379-20795499 0.00017 95_[+1]_17 chr2L:15475162-15475282 0.00019 2_[+1]_110 chr2L:14461808-14461928 0.00023 83_[+1]_29 chr2R:19840840-19840960 0.00025 17_[+1]_95 chr3R:22026313-22026433 0.00028 84_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAATGGM width=8 seqs=48 chr3R:29697980-29698100 ( 103) ACAATGGC 1 chr2R:19276696-19276816 ( 70) ACAATGGC 1 chr3R:8284373-8284493 ( 76) ACAATGGC 1 chr3R:20285033-20285153 ( 44) ACAATGGC 1 chrX:9763814-9763934 ( 98) ACAATGGC 1 chr3R:21466131-21466251 ( 48) ACAATGGC 1 chr3L:16017667-16017787 ( 17) ACAATGGC 1 chr3R:17603113-17603233 ( 4) ACAATGGC 1 chr2L:11338053-11338173 ( 7) ACAATGGA 1 chr3L:14650135-14650255 ( 55) ACAATGGA 1 chr3L:11434272-11434392 ( 55) ACAATGGA 1 chr3L:18749614-18749734 ( 107) ACAATGGA 1 chr3L:349486-349606 ( 76) ACAATGGA 1 chr3R:21413190-21413310 ( 111) ACAATGGG 1 chr2L:4457477-4457597 ( 66) ACAATGGG 1 chr2L:11349793-11349913 ( 57) ACAATGGG 1 chr3R:29293610-29293730 ( 90) ACAATGGG 1 chr2L:2181657-2181777 ( 38) ACAATGGG 1 chr3L:20687907-20688027 ( 43) ACAATGGG 1 chr2L:5392107-5392227 ( 34) ACAATTGC 1 chr2R:18677488-18677608 ( 35) ACAATTGC 1 chr2R:6638826-6638946 ( 49) ACAATTGC 1 chr3R:29306449-29306569 ( 21) ACAATTGC 1 chr3L:6324686-6324806 ( 22) ACAATTGC 1 chr2R:15356832-15356952 ( 80) ACAATTGC 1 chr3R:8210269-8210389 ( 43) ACAATTGC 1 chr3R:8180153-8180273 ( 56) ACAATTGC 1 chrX:417289-417409 ( 68) ACAATGCC 1 chr3L:21788039-21788159 ( 104) ACAATGCC 1 chr3R:29282410-29282530 ( 72) ACAAAGGC 1 chr2L:5890684-5890804 ( 23) ACAAAGGC 1 chr3L:19805557-19805677 ( 58) ACAAAGGC 1 chrX:18287710-18287830 ( 41) ACAAAGGC 1 chr2R:19937632-19937752 ( 5) ACAAAGGC 1 chr3R:22463986-22464106 ( 91) ACAATTGA 1 chr3L:4623306-4623426 ( 96) ACAATTGA 1 chr2R:13825171-13825291 ( 44) ACAATTGG 1 chr2R:24803101-24803221 ( 55) ACAATGCA 1 chrX:3847274-3847394 ( 10) ACAATGCA 1 chr3R:8967127-8967247 ( 13) ACAATGCA 1 chr2R:11736774-11736894 ( 69) ACAAAGGA 1 chr2L:12670538-12670658 ( 5) ACAAAGGA 1 chr3R:8689777-8689897 ( 100) ACAATGCG 1 chr3L:20795379-20795499 ( 96) ACAATGCG 1 chr2L:15475162-15475282 ( 3) ACAAAGGG 1 chr2L:14461808-14461928 ( 84) ACAAAGCC 1 chr2R:19840840-19840960 ( 18) ACAATTCA 1 chr3R:22026313-22026433 ( 85) ACAATTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 3.5e-008 199 -1223 -1223 -1223 -1223 199 -1223 -1223 199 -1223 -1223 -1223 199 -1223 -1223 -1223 -42 -1223 -1223 173 -1223 -1223 153 15 -1223 -28 165 -1223 11 99 -14 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 3.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187500 0.000000 0.000000 0.812500 0.000000 0.000000 0.729167 0.270833 0.000000 0.208333 0.791667 0.000000 0.270833 0.500000 0.229167 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAATGGM MEME-1 regular expression -------------------------------------------------------------------------------- ACAAT[GT][GC][CAG] -------------------------------------------------------------------------------- Time 7.32 secs. ******************************************************************************** ******************************************************************************** MOTIF CATTGTBY MEME-2 width = 8 sites = 37 llr = 320 E-value = 5.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1a:::::: pos.-specific C 9:::::44 probability G ::::a:42 matrix T ::aa:a35 bits 2.0 ***** 1.8 ***** 1.6 ***** 1.4 ****** Relative 1.2 ****** Entropy 1.0 ****** (12.5 bits) 0.8 ****** 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATTGTCT consensus GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6456542-6456662 60 1.42e-05 TTGTGGTTGT CATTGTCT CGGGGCTCCA chr2R:9405261-9405381 58 1.42e-05 AGATCAGTGG CATTGTCT GGATGAGTTT chrX:7245929-7246049 108 1.42e-05 tgcaagtgca cattgtct ttgca chr2L:15323326-15323446 85 1.42e-05 CTGAGTTGGG CATTGTCT GCACGCTGGG chr3R:8210269-8210389 51 1.42e-05 TCACAATTGC CATTGTCT GAGTGTAGGA chr2R:11787136-11787256 50 1.42e-05 CACAAATCGC CATTGTCT CGTCGAACAA chr3R:13899866-13899986 14 2.85e-05 CGGGCTGCTG CATTGTGT TCCTCTTTAT chr2L:8839217-8839337 57 2.85e-05 TCACACGCTT CATTGTGT CGAACCAGGG chr2L:12611809-12611929 31 2.85e-05 CCAGATTTGC CATTGTGT GGAATCGGGT chr2R:9703685-9703805 21 2.85e-05 TTATCCGCAG CATTGTGT TAGCCTGCTT chrX:417289-417409 54 4.32e-05 GCGGTCAAAA CATTGTCC ACGAGAACAA chr3R:11355555-11355675 40 4.32e-05 TTCGGCATCC CATTGTCC TGACGGCGAC chr3L:11404125-11404245 71 4.32e-05 ttgccattgc cattgtcc ttgccGAGTG chr2L:15475162-15475282 110 4.32e-05 GCGTTCTAGC CATTGTCC ACC chr3L:21788039-21788159 75 4.32e-05 TATCGAGAAA CATTGTCC CTTTGTTGAA chr3R:17603113-17603233 45 4.32e-05 TTGTCAGTGT CATTGTCC AGGCATCGCC chr2L:11452740-11452860 109 5.79e-05 TGATCGCGCT CATTGTGC CCTG chr3R:29289475-29289595 43 5.79e-05 AAATCGCAGG CATTGTGC CCGGATAGAT chr3R:25632930-25633050 105 5.79e-05 TTTGCCCTGC CATTGTGC TCGAAATG chr2R:9702208-9702328 81 5.79e-05 TAAACAATCT CATTGTGC GCACTCGAAC chr2R:22888240-22888360 29 5.79e-05 TGCGGCGGCC CATTGTGC ACCATGGTCT chr3R:8681081-8681201 3 7.17e-05 AT CATTGTTT TAAAACTGAA chr2R:11555988-11556108 29 7.17e-05 ACACATGCGA CATTGTTT GTTTTTATTT chr3L:4623306-4623426 5 7.17e-05 TGCG CATTGTTT GCTGGCTAAG chr2L:5399003-5399123 102 7.17e-05 TACCGATTTT CATTGTTT TCCGCTTGGC chr2L:3633453-3633573 92 8.59e-05 GCTTCTTGGC CATTGTTC GCTCGAGTCG chr3R:23890617-23890737 69 1.01e-04 AGAGTCCAGA CATTGTCG CAGAAGCGGT chr3R:21413190-21413310 53 1.15e-04 CATAACTAAT CATTGTGG CAGGCGGCGG chr2L:14253127-14253247 57 1.30e-04 ACCTGATCCC CATTGTTG TTGTGGCAGG chr2L:16444449-16444569 38 1.30e-04 ATCCCCATCG CATTGTTG TGACTGTCGT chr2R:6669514-6669634 98 1.30e-04 AGGCGGACCT CATTGTTG GCTTTCCGCC chr3L:20644259-20644379 39 1.30e-04 ATTATGCGTG CATTGTTG TGGTCGTTTT chr3L:273029-273149 60 1.58e-04 CCTTTCTGGT AATTGTGT CGTAGAAATA chr2L:10222165-10222285 18 1.58e-04 ATAGTTAGTA AATTGTGT TTTTCTTGCA chr2R:19937632-19937752 86 1.73e-04 ATCTACGAGG AATTGTCC CTGGTCCCCG chr3L:51011-51131 98 1.87e-04 CGACTGCAAA AATTGTGC GCCTGTGCCA chr2R:18211987-18212107 88 2.01e-04 AAAGCTTGCA AATTGTTT GAAGCATCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6456542-6456662 1.4e-05 59_[+2]_53 chr2R:9405261-9405381 1.4e-05 57_[+2]_55 chrX:7245929-7246049 1.4e-05 107_[+2]_5 chr2L:15323326-15323446 1.4e-05 84_[+2]_28 chr3R:8210269-8210389 1.4e-05 50_[+2]_62 chr2R:11787136-11787256 1.4e-05 49_[+2]_63 chr3R:13899866-13899986 2.8e-05 13_[+2]_99 chr2L:8839217-8839337 2.8e-05 56_[+2]_56 chr2L:12611809-12611929 2.8e-05 30_[+2]_82 chr2R:9703685-9703805 2.8e-05 20_[+2]_92 chrX:417289-417409 4.3e-05 53_[+2]_59 chr3R:11355555-11355675 4.3e-05 39_[+2]_73 chr3L:11404125-11404245 4.3e-05 70_[+2]_42 chr2L:15475162-15475282 4.3e-05 109_[+2]_3 chr3L:21788039-21788159 4.3e-05 74_[+2]_38 chr3R:17603113-17603233 4.3e-05 44_[+2]_68 chr2L:11452740-11452860 5.8e-05 108_[+2]_4 chr3R:29289475-29289595 5.8e-05 42_[+2]_70 chr3R:25632930-25633050 5.8e-05 104_[+2]_8 chr2R:9702208-9702328 5.8e-05 80_[+2]_32 chr2R:22888240-22888360 5.8e-05 28_[+2]_84 chr3R:8681081-8681201 7.2e-05 2_[+2]_110 chr2R:11555988-11556108 7.2e-05 28_[+2]_84 chr3L:4623306-4623426 7.2e-05 4_[+2]_108 chr2L:5399003-5399123 7.2e-05 101_[+2]_11 chr2L:3633453-3633573 8.6e-05 91_[+2]_21 chr3R:23890617-23890737 0.0001 68_[+2]_44 chr3R:21413190-21413310 0.00012 52_[+2]_60 chr2L:14253127-14253247 0.00013 56_[+2]_56 chr2L:16444449-16444569 0.00013 37_[+2]_75 chr2R:6669514-6669634 0.00013 97_[+2]_15 chr3L:20644259-20644379 0.00013 38_[+2]_74 chr3L:273029-273149 0.00016 59_[+2]_53 chr2L:10222165-10222285 0.00016 17_[+2]_95 chr2R:19937632-19937752 0.00017 85_[+2]_27 chr3L:51011-51131 0.00019 97_[+2]_15 chr2R:18211987-18212107 0.0002 87_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATTGTBY width=8 seqs=37 chr2L:6456542-6456662 ( 60) CATTGTCT 1 chr2R:9405261-9405381 ( 58) CATTGTCT 1 chrX:7245929-7246049 ( 108) CATTGTCT 1 chr2L:15323326-15323446 ( 85) CATTGTCT 1 chr3R:8210269-8210389 ( 51) CATTGTCT 1 chr2R:11787136-11787256 ( 50) CATTGTCT 1 chr3R:13899866-13899986 ( 14) CATTGTGT 1 chr2L:8839217-8839337 ( 57) CATTGTGT 1 chr2L:12611809-12611929 ( 31) CATTGTGT 1 chr2R:9703685-9703805 ( 21) CATTGTGT 1 chrX:417289-417409 ( 54) CATTGTCC 1 chr3R:11355555-11355675 ( 40) CATTGTCC 1 chr3L:11404125-11404245 ( 71) CATTGTCC 1 chr2L:15475162-15475282 ( 110) CATTGTCC 1 chr3L:21788039-21788159 ( 75) CATTGTCC 1 chr3R:17603113-17603233 ( 45) CATTGTCC 1 chr2L:11452740-11452860 ( 109) CATTGTGC 1 chr3R:29289475-29289595 ( 43) CATTGTGC 1 chr3R:25632930-25633050 ( 105) CATTGTGC 1 chr2R:9702208-9702328 ( 81) CATTGTGC 1 chr2R:22888240-22888360 ( 29) CATTGTGC 1 chr3R:8681081-8681201 ( 3) CATTGTTT 1 chr2R:11555988-11556108 ( 29) CATTGTTT 1 chr3L:4623306-4623426 ( 5) CATTGTTT 1 chr2L:5399003-5399123 ( 102) CATTGTTT 1 chr2L:3633453-3633573 ( 92) CATTGTTC 1 chr3R:23890617-23890737 ( 69) CATTGTCG 1 chr3R:21413190-21413310 ( 53) CATTGTGG 1 chr2L:14253127-14253247 ( 57) CATTGTTG 1 chr2L:16444449-16444569 ( 38) CATTGTTG 1 chr2R:6669514-6669634 ( 98) CATTGTTG 1 chr3L:20644259-20644379 ( 39) CATTGTTG 1 chr3L:273029-273149 ( 60) AATTGTGT 1 chr2L:10222165-10222285 ( 18) AATTGTGT 1 chr2R:19937632-19937752 ( 86) AATTGTCC 1 chr3L:51011-51131 ( 98) AATTGTGC 1 chr2R:18211987-18212107 ( 88) AATTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.73988 E= 5.2e-002 -90 178 -1185 -1185 199 -1185 -1185 -1185 -1185 -1185 -1185 203 -1185 -1185 -1185 203 -1185 -1185 199 -1185 -1185 -1185 -1185 203 -1185 58 48 15 -1185 58 -64 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 5.2e-002 0.135135 0.864865 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.378378 0.351351 0.270270 0.000000 0.378378 0.162162 0.459459 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTGTBY MEME-2 regular expression -------------------------------------------------------------------------------- CATTGT[CGT][TC] -------------------------------------------------------------------------------- Time 13.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TYCTTTKB MEME-3 width = 8 sites = 30 llr = 261 E-value = 5.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :7a::::3 probability G ::::::34 matrix T a3:aaa72 bits 2.0 * *** 1.8 * **** 1.6 * **** 1.4 * **** Relative 1.2 * **** Entropy 1.0 ******* (12.6 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTTTTG consensus T GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25632930-25633050 85 1.38e-05 AGGACCAGTG TCCTTTTG TCTTTGCCCT chr3L:12719563-12719683 76 1.38e-05 CGCCACAATA TCCTTTTG CGACAATGAG chr2R:20054464-20054584 83 1.38e-05 CATCAGCCGC TCCTTTTG ATCCTGGCTA chrX:9688939-9689059 103 2.77e-05 GAGTAGAGGA TCCTTTTC GTTGGTTTTC chr3R:14681656-14681776 82 2.77e-05 ACGCTGTGTT TCCTTTTC TTTTCTTTCC chr3L:273029-273149 10 2.77e-05 GCATTCCTA TCCTTTTC TCGGTGGTGG chr3R:25476501-25476621 45 2.77e-05 GCGCATCTGC TCCTTTTC GGCATGAAGC chr3R:13899866-13899986 89 4.11e-05 CGGTTTTCAT TCCTTTTT GCGAACTCTG chrX:7245929-7246049 29 4.11e-05 TTTCAATGCA TCCTTTTT GGTGCGAGCG chr2R:19840840-19840960 2 5.45e-05 T TTCTTTTG GTATCCAGAC chr2R:21715658-21715778 16 5.45e-05 CCACGATATC TTCTTTTG ATTCGCTTAG chr2L:5392107-5392227 99 5.45e-05 AGAAGATCGT TTCTTTTG CGAGGCCATA chr2L:8092931-8093051 44 5.45e-05 ACTGTTTTGC TTCTTTTG CGCAAACATT chr2L:14253127-14253247 84 5.45e-05 GGATCATGTC TTCTTTTG GGCCAACTTA chr2L:19883349-19883469 10 6.88e-05 CACTCTTAA TCCTTTGG CGGAGCCTCG chr3L:11404125-11404245 111 6.88e-05 TAGGTACAAG TCCTTTGG CC chr3R:19171766-19171886 15 6.88e-05 TTGGGCACGA TCCTTTGG CGAATGTGGA chr3L:16017667-16017787 73 6.88e-05 CTTTTGAAGG TCCTTTGG GCCAAAGTTC chr3R:12382715-12382835 81 8.22e-05 AAGATCCCAC TTCTTTTC TAATCCCTAA chr3L:18012966-18013086 100 8.22e-05 TTATTTGATT TTCTTTTC GCACATGGGC chr3R:23301363-23301483 89 8.22e-05 ttgcctgttg ttcttttc gtattccctt chr3R:4354179-4354299 111 8.22e-05 TCAACTCGGA TTCTTTTC TC chr2L:4839488-4839608 37 9.65e-05 GAACGTGAAT TCCTTTGC AACAACACTT chr3L:10998841-10998961 41 9.65e-05 GGGAGTCGTC TCCTTTGC AGACTGCTCC chr2R:13506642-13506762 24 1.09e-04 TGTGCAGATT TTCTTTTT GTTTTGTCCG chr2R:11537501-11537621 37 1.23e-04 AGGTCGTGTG TCCTTTGT GTCATCGCTC chr3R:29546547-29546667 65 1.23e-04 CCGGATTTGG TCCTTTGT GCCGAGCAGA chr2R:11555988-11556108 82 1.23e-04 AGGCTGCTGC TCCTTTGT TGGCCAAATG chr3R:8284373-8284493 87 1.23e-04 CAATGGCGAG TCCTTTGT GAAACAAAGG chr2R:8250311-8250431 92 1.78e-04 TGGTCAGCTA TCGTTTTG GAATCCGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25632930-25633050 1.4e-05 84_[+3]_28 chr3L:12719563-12719683 1.4e-05 75_[+3]_37 chr2R:20054464-20054584 1.4e-05 82_[+3]_30 chrX:9688939-9689059 2.8e-05 102_[+3]_10 chr3R:14681656-14681776 2.8e-05 81_[+3]_31 chr3L:273029-273149 2.8e-05 9_[+3]_103 chr3R:25476501-25476621 2.8e-05 44_[+3]_68 chr3R:13899866-13899986 4.1e-05 88_[+3]_24 chrX:7245929-7246049 4.1e-05 28_[+3]_84 chr2R:19840840-19840960 5.4e-05 1_[+3]_111 chr2R:21715658-21715778 5.4e-05 15_[+3]_97 chr2L:5392107-5392227 5.4e-05 98_[+3]_14 chr2L:8092931-8093051 5.4e-05 43_[+3]_69 chr2L:14253127-14253247 5.4e-05 83_[+3]_29 chr2L:19883349-19883469 6.9e-05 9_[+3]_103 chr3L:11404125-11404245 6.9e-05 110_[+3]_2 chr3R:19171766-19171886 6.9e-05 14_[+3]_98 chr3L:16017667-16017787 6.9e-05 72_[+3]_40 chr3R:12382715-12382835 8.2e-05 80_[+3]_32 chr3L:18012966-18013086 8.2e-05 99_[+3]_13 chr3R:23301363-23301483 8.2e-05 88_[+3]_24 chr3R:4354179-4354299 8.2e-05 110_[+3]_2 chr2L:4839488-4839608 9.6e-05 36_[+3]_76 chr3L:10998841-10998961 9.6e-05 40_[+3]_72 chr2R:13506642-13506762 0.00011 23_[+3]_89 chr2R:11537501-11537621 0.00012 36_[+3]_76 chr3R:29546547-29546667 0.00012 64_[+3]_48 chr2R:11555988-11556108 0.00012 81_[+3]_31 chr3R:8284373-8284493 0.00012 86_[+3]_26 chr2R:8250311-8250431 0.00018 91_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYCTTTKB width=8 seqs=30 chr3R:25632930-25633050 ( 85) TCCTTTTG 1 chr3L:12719563-12719683 ( 76) TCCTTTTG 1 chr2R:20054464-20054584 ( 83) TCCTTTTG 1 chrX:9688939-9689059 ( 103) TCCTTTTC 1 chr3R:14681656-14681776 ( 82) TCCTTTTC 1 chr3L:273029-273149 ( 10) TCCTTTTC 1 chr3R:25476501-25476621 ( 45) TCCTTTTC 1 chr3R:13899866-13899986 ( 89) TCCTTTTT 1 chrX:7245929-7246049 ( 29) TCCTTTTT 1 chr2R:19840840-19840960 ( 2) TTCTTTTG 1 chr2R:21715658-21715778 ( 16) TTCTTTTG 1 chr2L:5392107-5392227 ( 99) TTCTTTTG 1 chr2L:8092931-8093051 ( 44) TTCTTTTG 1 chr2L:14253127-14253247 ( 84) TTCTTTTG 1 chr2L:19883349-19883469 ( 10) TCCTTTGG 1 chr3L:11404125-11404245 ( 111) TCCTTTGG 1 chr3R:19171766-19171886 ( 15) TCCTTTGG 1 chr3L:16017667-16017787 ( 73) TCCTTTGG 1 chr3R:12382715-12382835 ( 81) TTCTTTTC 1 chr3L:18012966-18013086 ( 100) TTCTTTTC 1 chr3R:23301363-23301483 ( 89) TTCTTTTC 1 chr3R:4354179-4354299 ( 111) TTCTTTTC 1 chr2L:4839488-4839608 ( 37) TCCTTTGC 1 chr3L:10998841-10998961 ( 41) TCCTTTGC 1 chr2R:13506642-13506762 ( 24) TTCTTTTT 1 chr2R:11537501-11537621 ( 37) TCCTTTGT 1 chr3R:29546547-29546667 ( 65) TCCTTTGT 1 chr2R:11555988-11556108 ( 82) TCCTTTGT 1 chr3R:8284373-8284493 ( 87) TCCTTTGT 1 chr2R:8250311-8250431 ( 92) TCGTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 5.8e+002 -1155 -1155 -1155 203 -1155 140 -1155 45 -1155 194 -292 -1155 -1155 -1155 -1155 203 -1155 -1155 -1155 203 -1155 -1155 -1155 203 -1155 -1155 40 145 -1155 40 78 -6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.8e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.966667 0.033333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.333333 0.433333 0.233333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTTKB MEME-3 regular expression -------------------------------------------------------------------------------- T[CT]CTTT[TG][GCT] -------------------------------------------------------------------------------- Time 19.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGTTTG MEME-4 width = 8 sites = 2 llr = 22 E-value = 3.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :::a:::a matrix T aaa:aaa: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16444449-16444569 105 1.34e-05 TCTTCGCTGC TTTGTTTG GGGTATTT chr3R:25632930-25633050 18 1.34e-05 CGCAAGCAAA TTTGTTTG CCGCTCGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16444449-16444569 1.3e-05 104_[+4]_8 chr3R:25632930-25633050 1.3e-05 17_[+4]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGTTTG width=8 seqs=2 chr2L:16444449-16444569 ( 105) TTTGTTTG 1 chr3R:25632930-25633050 ( 18) TTTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.8e+005 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 -765 198 -765 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 -765 198 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.8e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTG MEME-4 regular expression -------------------------------------------------------------------------------- TTTGTTTG -------------------------------------------------------------------------------- Time 25.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGTTTT MEME-5 width = 8 sites = 2 llr = 22 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :::a:::: matrix T aaa:aaaa bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5392107-5392227 46 1.30e-05 AATTGCAGGG TTTGTTTT GGGCCATTTT chr2L:157027-157147 33 1.30e-05 GTCACAGCTG TTTGTTTT GGTGACACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5392107-5392227 1.3e-05 45_[+5]_67 chr2L:157027-157147 1.3e-05 32_[+5]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGTTTT width=8 seqs=2 chr2L:5392107-5392227 ( 46) TTTGTTTT 1 chr2L:157027-157147 ( 33) TTTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.4e+005 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 -765 198 -765 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 regular expression -------------------------------------------------------------------------------- TTTGTTTT -------------------------------------------------------------------------------- Time 31.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19937632-19937752 3.57e-02 4_[+1(9.33e-05)]_108 chr3R:17603113-17603233 1.17e-04 3_[+1(1.56e-05)]_33_[+2(4.32e-05)]_\ 68 chr3L:16017667-16017787 2.57e-03 16_[+1(1.56e-05)]_48_[+3(6.88e-05)]_\ 40 chr3R:21466131-21466251 1.67e-03 47_[+1(1.56e-05)]_65 chr3R:8180153-8180273 1.29e-02 55_[+1(6.17e-05)]_57 chrX:9763814-9763934 1.28e-01 97_[+1(1.56e-05)]_15 chr2R:8250311-8250431 3.29e-01 120 chr3R:21654594-21654714 1.35e-04 92_[+4(9.29e-05)]_20 chr3R:23890617-23890737 1.36e-02 120 chr3L:20795379-20795499 2.06e-01 120 chr3L:20687907-20688027 1.38e-01 42_[+1(4.66e-05)]_70 chr2R:13225942-13226062 2.99e-01 120 chr2R:11304944-11305064 5.93e-02 120 chr3R:8689777-8689897 4.40e-01 120 chr3L:12454199-12454319 2.97e-02 120 chr3L:20644259-20644379 2.97e-02 120 chrX:18287710-18287830 4.90e-01 40_[+1(9.33e-05)]_72 chr2L:14461808-14461928 5.77e-02 120 chr3L:13412352-13412472 5.88e-01 120 chr3L:613292-613412 4.64e-01 120 chr2R:17504163-17504283 6.88e-01 120 chr2R:6672972-6673092 8.33e-01 120 chr3R:30198590-30198710 8.01e-01 120 chr3R:22026313-22026433 5.87e-01 120 chr3R:11883261-11883381 2.23e-01 120 chr2R:11787136-11787256 3.09e-02 49_[+2(1.42e-05)]_63 chr2R:24060795-24060915 9.55e-01 120 chr3L:11065517-11065637 9.59e-01 120 chr2L:5399003-5399123 1.40e-03 101_[+2(7.17e-05)]_11 chr3R:8210269-8210389 2.68e-03 42_[+1(6.17e-05)]_[+2(1.42e-05)]_62 chr2L:10385244-10385364 9.88e-01 120 chr3L:10998841-10998961 1.99e-01 40_[+3(9.65e-05)]_72 chr2R:13506642-13506762 4.17e-05 28_[+5(1.30e-05)]_84 chr3R:19171766-19171886 7.01e-02 14_[+3(6.88e-05)]_98 chr2L:2181657-2181777 1.84e-01 37_[+1(4.66e-05)]_75 chrX:18863436-18863556 1.26e-01 120 chr2R:15356832-15356952 2.91e-01 79_[+1(6.17e-05)]_33 chr3L:245223-245343 1.87e-01 120 chr3L:349486-349606 8.93e-02 75_[+1(3.11e-05)]_37 chr2R:18173951-18174071 9.28e-01 120 chr2R:21558571-21558691 9.97e-01 120 chr2L:4384444-4384564 2.31e-01 120 chr3R:12319112-12319232 3.43e-02 120 chr3L:1456487-1456607 4.12e-01 120 chr3R:6647403-6647523 4.07e-01 120 chr3R:21360607-21360727 9.40e-01 120 chr2R:19267719-19267839 7.27e-01 120 chr3R:20285033-20285153 2.39e-01 43_[+1(1.56e-05)]_69 chr2R:15936896-15937016 8.48e-01 120 chr2R:14620150-14620270 2.68e-01 120 chr3L:14952535-14952655 9.74e-03 120 chr2R:22888240-22888360 3.54e-02 28_[+2(5.79e-05)]_84 chrX:6746941-6747061 6.33e-01 120 chr3L:9718574-9718694 8.48e-01 120 chrX:587951-588071 1.37e-01 120 chr2R:9703685-9703805 2.90e-02 20_[+2(2.85e-05)]_83_[+2(8.59e-05)]_\ 1 chr2L:6949823-6949943 8.81e-01 120 chr2L:19199627-19199747 9.96e-01 120 chr3L:8341239-8341359 8.18e-01 120 chr3R:19360012-19360132 7.83e-01 120 chr3R:8967127-8967247 2.19e-01 120 chr2R:11979382-11979502 7.88e-01 120 chr3L:22070975-22071095 9.84e-01 120 chr3R:16342688-16342808 9.49e-01 120 chr3L:19805557-19805677 9.39e-04 57_[+1(9.33e-05)]_22_[+4(9.29e-05)]_\ 25 chr3R:29286607-29286727 9.95e-01 120 chr2L:8822438-8822558 5.82e-01 120 chr3R:29295354-29295474 6.86e-01 120 chr2L:7112375-7112495 1.42e-01 120 chr3L:4623306-4623426 1.98e-04 4_[+2(7.17e-05)]_108 chr3R:8284373-8284493 1.02e-02 67_[+1(3.11e-05)]_[+1(1.56e-05)]_14_\ [+1(9.33e-05)]_15 chr3R:24049892-24050012 8.17e-02 120 chr2R:13825171-13825291 2.99e-03 120 chr2L:19577998-19578118 7.22e-01 120 chr3L:21788039-21788159 6.54e-04 74_[+2(4.32e-05)]_21_[+1(7.72e-05)]_\ 9 chr3R:13752668-13752788 7.97e-01 120 chr2R:20054464-20054584 6.44e-05 14_[+5(5.14e-05)]_60_[+3(1.38e-05)]_\ 30 chr3L:18749614-18749734 3.20e-01 106_[+1(3.11e-05)]_6 chr2L:15323326-15323446 3.35e-02 84_[+2(1.42e-05)]_28 chr3L:377008-377128 9.70e-01 120 chr3R:4344374-4344494 5.97e-01 120 chr2R:6572604-6572724 9.60e-01 120 chr3L:6324686-6324806 2.26e-01 21_[+1(6.17e-05)]_91 chr2L:9612095-9612215 9.96e-01 120 chr3R:29293610-29293730 1.37e-01 89_[+1(4.66e-05)]_23 chr2L:11455299-11455419 2.85e-01 120 chr3L:15807614-15807734 4.94e-01 120 chr3R:30475359-30475479 6.75e-01 120 chr2L:5890684-5890804 1.02e-03 22_[+1(9.33e-05)]_90 chr2L:4464531-4464651 8.72e-01 120 chr3L:15785477-15785597 3.12e-01 120 chr3R:25476501-25476621 8.36e-02 44_[+3(2.77e-05)]_68 chr3R:4354179-4354299 8.33e-02 110_[+3(8.22e-05)]_2 chr2R:17002819-17002939 2.31e-01 120 chr3L:18306906-18307026 7.39e-01 120 chr3L:298046-298166 8.49e-01 120 chr2L:16444249-16444369 1.44e-01 120 chr2R:12515594-12515714 9.64e-01 120 chr3R:4713647-4713767 9.67e-01 120 chr3R:11363724-11363844 8.76e-01 120 chr3R:23828377-23828497 6.87e-01 120 chr3R:4434965-4435085 6.65e-02 120 chrX:7245929-7246049 4.82e-04 28_[+3(4.11e-05)]_71_[+2(1.42e-05)]_\ 5 chr3R:5017021-5017141 1.34e-01 120 chr3L:14950500-14950620 3.52e-01 120 chr3R:29282410-29282530 2.51e-01 71_[+1(9.33e-05)]_41 chr2L:12611809-12611929 3.31e-02 30_[+2(2.85e-05)]_82 chr2L:11349793-11349913 1.82e-03 56_[+1(4.66e-05)]_56 chr2L:13771479-13771599 6.18e-01 120 chr3L:11413418-11413538 3.36e-01 120 chr3R:23118779-23118899 6.80e-01 120 chr2R:9405261-9405381 1.19e-02 57_[+2(1.42e-05)]_55 chr3R:8662294-8662414 5.02e-01 120 chr2R:6669514-6669634 1.39e-01 120 chr3L:2591430-2591550 9.90e-01 120 chr3R:23301363-23301483 1.08e-02 88_[+3(8.22e-05)]_24 chr3R:15233984-15234104 2.37e-01 120 chr3R:15578417-15578537 2.15e-02 120 chr2R:9702208-9702328 8.39e-02 80_[+2(5.79e-05)]_32 chr3R:7473416-7473536 4.88e-01 120 chr3L:4137291-4137411 6.80e-01 120 chr3L:12719563-12719683 1.24e-02 75_[+3(1.38e-05)]_37 chrX:3847274-3847394 9.00e-03 120 chr2L:1947247-1947367 1.07e-01 120 chr2R:18709348-18709468 4.57e-03 62_[+5(5.14e-05)]_50 chr2R:21283006-21283126 8.96e-01 120 chr3R:29516942-29517062 4.66e-01 120 chr3R:24162058-24162178 9.89e-01 120 chr2L:10222165-10222285 1.25e-02 120 chr2R:11555988-11556108 4.03e-06 33_[+5(1.30e-05)]_79 chr3R:29306449-29306569 2.44e-01 20_[+1(6.17e-05)]_92 chr2L:15475162-15475282 4.02e-02 109_[+2(4.32e-05)]_3 chr3R:27855630-27855750 7.80e-01 120 chr3L:697347-697467 7.84e-01 120 chr2L:3633453-3633573 1.47e-01 91_[+2(8.59e-05)]_21 chr2R:6638826-6638946 2.07e-01 48_[+1(6.17e-05)]_64 chr3L:3073999-3074119 8.09e-01 120 chr2L:8153467-8153587 4.53e-01 120 chr2L:12670538-12670658 5.72e-01 120 chr2L:157027-157147 1.49e-04 32_[+5(1.30e-05)]_80 chr3R:9754250-9754370 8.62e-02 120 chr2L:4457477-4457597 9.78e-02 65_[+1(4.66e-05)]_47 chr2L:19338084-19338204 1.89e-01 120 chr3L:273029-273149 2.40e-02 9_[+3(2.77e-05)]_103 chr3R:14681656-14681776 3.34e-04 81_[+3(2.77e-05)]_31 chr3R:31615650-31615770 7.66e-01 120 chr3R:25632930-25633050 5.81e-06 17_[+4(1.34e-05)]_59_[+3(1.38e-05)]_\ 12_[+2(5.79e-05)]_8 chr3R:28821415-28821535 9.88e-01 120 chr3R:15350562-15350682 4.40e-01 120 chr2L:6924107-6924227 9.92e-01 120 chr2L:8839217-8839337 3.55e-05 6_[+4(9.29e-05)]_[+4(1.34e-05)]_11_\ [+4(1.34e-05)]_15_[+2(2.85e-05)]_56 chr3L:11404125-11404245 3.28e-04 70_[+2(4.32e-05)]_32_[+3(6.88e-05)]_\ 2 chr2L:6456542-6456662 2.30e-04 59_[+2(1.42e-05)]_23_[+4(9.29e-05)]_\ 22 chr2L:9701589-9701709 8.44e-01 120 chr2R:24513840-24513960 1.29e-01 120 chr3L:11259912-11260032 1.36e-01 120 chr2L:4839488-4839608 6.76e-02 36_[+3(9.65e-05)]_76 chr3L:5563946-5564066 4.21e-01 120 chr3R:24917486-24917606 3.65e-01 120 chr3L:10189317-10189437 1.91e-02 120 chr2L:19339934-19340054 8.30e-01 120 chr2R:18677488-18677608 2.27e-01 34_[+1(6.17e-05)]_78 chr2R:9594842-9594962 2.55e-01 120 chr2L:12704139-12704259 9.87e-01 120 chr3L:51011-51131 1.80e-01 120 chr2R:13507903-13508023 6.88e-01 120 chr3R:11355555-11355675 1.01e-01 39_[+2(4.32e-05)]_73 chr3R:29714476-29714596 9.17e-01 120 chr2R:18211987-18212107 2.23e-02 120 chr3R:17092770-17092890 9.91e-01 120 chr2L:8789214-8789334 4.74e-01 120 chr3R:28809554-28809674 3.52e-01 120 chr3L:13407498-13407618 1.03e-01 120 chr2R:11090782-11090902 9.38e-01 120 chr3L:17353335-17353455 4.08e-01 120 chr3L:11434272-11434392 7.40e-02 54_[+1(3.11e-05)]_58 chr3L:13043738-13043858 6.17e-01 120 chr2R:12757902-12758022 4.34e-01 120 chr3R:26056873-26056993 9.99e-01 120 chr2L:12048605-12048725 8.48e-01 120 chr2L:16444449-16444569 9.87e-05 104_[+4(1.34e-05)]_8 chr2L:7295520-7295640 3.75e-01 120 chr3R:29546547-29546667 5.89e-02 120 chr3R:8681081-8681201 3.44e-03 2_[+2(7.17e-05)]_110 chr3L:14650135-14650255 7.69e-02 54_[+1(3.11e-05)]_58 chr2R:16999603-16999723 9.98e-01 120 chr3R:26024229-26024349 8.40e-01 120 chr3R:16470272-16470392 9.61e-01 120 chr2L:10271840-10271960 4.30e-01 120 chrX:586130-586250 8.77e-01 120 chr2R:19438110-19438230 9.99e-01 120 chr2L:10001023-10001143 7.04e-01 120 chr2R:11537715-11537835 9.54e-01 120 chr3R:21642160-21642280 9.95e-01 120 chr3L:14980201-14980321 7.50e-01 120 chr2L:12730777-12730897 4.54e-01 120 chr3R:21413190-21413310 2.76e-02 110_[+1(4.66e-05)]_2 chr2L:14253127-14253247 1.05e-03 83_[+3(5.45e-05)]_29 chr3R:8825079-8825199 7.28e-01 120 chr3R:8313462-8313582 9.58e-01 120 chr3R:29150524-29150644 5.00e-01 120 chr3R:31958494-31958614 1.01e-01 120 chrX:417289-417409 9.97e-05 53_[+2(4.32e-05)]_6_[+1(7.72e-05)]_\ 45 chr2R:11736774-11736894 3.59e-01 120 chrX:5998061-5998181 8.36e-01 120 chr3R:15226172-15226292 9.90e-01 120 chr3L:16134170-16134290 7.63e-01 120 chr2L:12676407-12676527 2.46e-03 51_[+5(5.14e-05)]_61 chr2R:10894730-10894850 1.00e+00 120 chr2L:16225077-16225197 1.17e-01 120 chr2L:11338053-11338173 3.89e-02 6_[+1(3.11e-05)]_106 chr2R:24603009-24603129 1.98e-01 120 chr3R:29289475-29289595 1.29e-01 42_[+2(5.79e-05)]_70 chrX:8689658-8689778 2.53e-04 109_[+4(1.34e-05)]_3 chr2L:8092931-8093051 1.36e-02 43_[+3(5.45e-05)]_69 chrX:9688939-9689059 4.21e-05 22_[+5(5.14e-05)]_72_[+3(2.77e-05)]_\ 10 chr3R:9764261-9764381 3.80e-01 120 chr2R:19276696-19276816 5.05e-02 69_[+1(1.56e-05)]_43 chr2L:5392107-5392227 3.30e-06 9_[+1(6.17e-05)]_16_[+1(6.17e-05)]_\ 4_[+5(1.30e-05)]_44_[+5(5.14e-05)]_15 chr3R:29994574-29994694 7.62e-01 120 chr3R:24056989-24057109 5.79e-01 120 chr3R:8806777-8806897 1.00e+00 120 chr3L:16018858-16018978 4.79e-01 120 chr3R:21458586-21458706 7.76e-01 120 chr2L:2770473-2770593 7.24e-01 120 chr2L:3854642-3854762 3.09e-01 120 chr2R:24803101-24803221 1.18e-02 120 chr3R:13899866-13899986 1.25e-04 13_[+2(2.85e-05)]_67_[+3(4.11e-05)]_\ 24 chr3R:5473117-5473237 1.81e-01 120 chr3L:4599920-4600040 9.69e-01 120 chr2R:23038049-23038169 9.18e-01 120 chr2L:15744122-15744242 1.88e-01 120 chr2R:11537501-11537621 2.06e-02 120 chr2R:21715658-21715778 2.23e-02 15_[+3(5.45e-05)]_97 chr2R:20048822-20048942 5.72e-01 120 chr2L:11452740-11452860 1.60e-02 108_[+2(5.79e-05)]_4 chr2L:18800909-18801029 7.17e-01 120 chr3L:18012966-18013086 2.96e-04 88_[+4(9.29e-05)]_2_[+5(5.14e-05)]_\ 14 chr2L:5955996-5956116 7.99e-01 120 chr2R:19840840-19840960 9.93e-05 [+5(5.14e-05)]_112 chr2L:19883349-19883469 5.57e-02 9_[+3(6.88e-05)]_103 chr3R:29088585-29088705 8.43e-01 120 chr2L:6390625-6390745 5.70e-04 24_[+4(1.34e-05)]_88 chr3L:13485793-13485913 7.24e-01 120 chr3R:22463986-22464106 2.51e-01 120 chr3R:29697980-29698100 6.46e-03 50_[+1(7.72e-05)]_44_[+1(1.56e-05)]_\ 10 chr2L:15482935-15483055 2.05e-02 120 chr3L:15561375-15561495 9.96e-01 120 chr3R:12382715-12382835 1.01e-03 80_[+3(8.22e-05)]_32 chr2L:4597719-4597839 3.01e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************