******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Crg-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8479275-8479395 1.0000 120 chr2R:17676920-17677040 1.0000 120 chrX:17183628-17183748 1.0000 120 chr2R:7673197-7673317 1.0000 120 chr3R:14734565-14734685 1.0000 120 chr3R:14070217-14070337 1.0000 120 chr2L:7047892-7048012 1.0000 120 chrX:9395039-9395159 1.0000 120 chr3R:9951161-9951281 1.0000 120 chr3R:8654221-8654341 1.0000 120 chr2L:16318411-16318531 1.0000 120 chr3L:16658914-16659034 1.0000 120 chr2R:19304005-19304125 1.0000 120 chr3L:7338999-7339119 1.0000 120 chr2R:19461631-19461751 1.0000 120 chr2R:21236768-21236888 1.0000 120 chr2R:16617518-16617638 1.0000 120 chrX:8473496-8473616 1.0000 120 chr3R:7522761-7522881 1.0000 120 chr2L:5946891-5947011 1.0000 120 chr3L:17401037-17401157 1.0000 120 chr3R:5839072-5839192 1.0000 120 chr3L:13924738-13924858 1.0000 120 chr3R:11429964-11430084 1.0000 120 chr2R:6993999-6994119 1.0000 120 chr2R:17715250-17715370 1.0000 120 chr3R:24566925-24567045 1.0000 120 chrX:9576613-9576733 1.0000 120 chr3L:16804733-16804853 1.0000 120 chr2R:24195510-24195630 1.0000 120 chr3L:11119489-11119609 1.0000 120 chr3R:23519827-23519947 1.0000 120 chr3R:7217323-7217443 1.0000 120 chr3R:24039328-24039448 1.0000 120 chrX:11136996-11137116 1.0000 120 chr3L:22053468-22053588 1.0000 120 chr2L:1122270-1122390 1.0000 120 chrX:9355497-9355617 1.0000 120 chr3L:4411386-4411506 1.0000 120 chr3L:19504817-19504937 1.0000 120 chr2R:8891335-8891455 1.0000 120 chr2R:16127261-16127381 1.0000 120 chr3L:19096172-19096292 1.0000 120 chr2R:7256367-7256487 1.0000 120 chr3L:21908974-21909094 1.0000 120 chr2L:18632556-18632676 1.0000 120 chr3R:17214897-17215017 1.0000 120 chr3R:5271000-5271120 1.0000 120 chr3R:14734770-14734890 1.0000 120 chrX:11373503-11373623 1.0000 120 chr2L:9526623-9526743 1.0000 120 chr2L:8348405-8348525 1.0000 120 chrX:1900288-1900408 1.0000 120 chrX:14805885-14806005 1.0000 120 chr2R:10151174-10151294 1.0000 120 chr2R:17709259-17709379 1.0000 120 chr2L:14501731-14501851 1.0000 120 chrX:20170095-20170215 1.0000 120 chr2L:20431366-20431486 1.0000 120 chr2L:1732314-1732434 1.0000 120 chr3R:29066465-29066585 1.0000 120 chr2L:13808063-13808183 1.0000 120 chr2R:17048874-17048994 1.0000 120 chr2R:13205351-13205471 1.0000 120 chrX:10369962-10370082 1.0000 120 chr3L:7835546-7835666 1.0000 120 chr3L:7841685-7841805 1.0000 120 chrX:13972557-13972677 1.0000 120 chr2L:135126-135246 1.0000 120 chrX:15308590-15308710 1.0000 120 chr2R:14986478-14986598 1.0000 120 chr3R:22518443-22518563 1.0000 120 chr3L:21059608-21059728 1.0000 120 chrX:7691572-7691692 1.0000 120 chr3R:19068015-19068135 1.0000 120 chr3R:7076727-7076847 1.0000 120 chr2R:10556350-10556470 1.0000 120 chrX:8576091-8576211 1.0000 120 chr3R:20955294-20955414 1.0000 120 chr3L:8748996-8749116 1.0000 120 chr3L:8683060-8683180 1.0000 120 chrX:11426037-11426157 1.0000 120 chr2R:13025531-13025651 1.0000 120 chr2R:17271309-17271429 1.0000 120 chrX:5917154-5917274 1.0000 120 chr2L:2039318-2039438 1.0000 120 chr2L:8007405-8007525 1.0000 120 chr3R:9010841-9010961 1.0000 120 chrX:17509755-17509875 1.0000 120 chrX:8484045-8484165 1.0000 120 chrX:11349934-11350054 1.0000 120 chrX:8152835-8152955 1.0000 120 chr3R:21195673-21195793 1.0000 120 chr2R:14361940-14362060 1.0000 120 chrX:16893137-16893257 1.0000 120 chr3R:21522380-21522500 1.0000 120 chr2L:19530241-19530361 1.0000 120 chr2L:18459808-18459928 1.0000 120 chr2R:10052736-10052856 1.0000 120 chr2R:16343632-16343752 1.0000 120 chr3R:14680519-14680639 1.0000 120 chr2L:5304420-5304540 1.0000 120 chr3R:25678690-25678810 1.0000 120 chr2R:6050209-6050329 1.0000 120 chr3L:3209069-3209189 1.0000 120 chr2R:14881264-14881384 1.0000 120 chr2R:16732782-16732902 1.0000 120 chr2L:482613-482733 1.0000 120 chr2R:15304874-15304994 1.0000 120 chr2R:14973136-14973256 1.0000 120 chrX:7969632-7969752 1.0000 120 chr3R:23996344-23996464 1.0000 120 chr3L:18790672-18790792 1.0000 120 chr4:558721-558841 1.0000 120 chrX:1041693-1041813 1.0000 120 chrX:20492725-20492845 1.0000 120 chrX:3447810-3447930 1.0000 120 chrX:11817520-11817640 1.0000 120 chrX:13934684-13934804 1.0000 120 chr3L:21524251-21524371 1.0000 120 chr3L:17419496-17419616 1.0000 120 chr2L:5117189-5117309 1.0000 120 chr3R:18438339-18438459 1.0000 120 chr2R:16867363-16867483 1.0000 120 chrX:10847188-10847308 1.0000 120 chr3R:24265048-24265168 1.0000 120 chr3R:16482329-16482449 1.0000 120 chrX:3675730-3675850 1.0000 120 chr3R:26260999-26261119 1.0000 120 chr3L:17904755-17904875 1.0000 120 chrX:17588098-17588218 1.0000 120 chr3R:28587168-28587288 1.0000 120 chr3R:15839462-15839582 1.0000 120 chr2R:23672669-23672789 1.0000 120 chr3R:29138459-29138579 1.0000 120 chr2R:21649072-21649192 1.0000 120 chr3R:18582342-18582462 1.0000 120 chr4:922808-922928 1.0000 120 chr2R:17420064-17420184 1.0000 120 chr2L:3030408-3030528 1.0000 120 chrX:11806359-11806479 1.0000 120 chr3L:9065064-9065184 1.0000 120 chr2R:13409918-13410038 1.0000 120 chrX:8473695-8473815 1.0000 120 chrX:6698437-6698557 1.0000 120 chr3R:14654545-14654665 1.0000 120 chr2L:6080536-6080656 1.0000 120 chr3L:137098-137218 1.0000 120 chrX:19762379-19762499 1.0000 120 chrX:6333470-6333590 1.0000 120 chr3L:9059898-9060018 1.0000 120 chr3R:21886926-21887046 1.0000 120 chr2R:9098463-9098583 1.0000 120 chr2R:6693161-6693281 1.0000 120 chr2L:13098627-13098747 1.0000 120 chr3R:5262106-5262226 1.0000 120 chr2R:12198854-12198974 1.0000 120 chr3R:9011879-9011999 1.0000 120 chr2R:10530614-10530734 1.0000 120 chr3L:17625132-17625252 1.0000 120 chrX:13814190-13814310 1.0000 120 chr2R:9836859-9836979 1.0000 120 chrX:3667372-3667492 1.0000 120 chr2R:21313155-21313275 1.0000 120 chr3L:2589883-2590003 1.0000 120 chr2L:1970810-1970930 1.0000 120 chr3R:10330795-10330915 1.0000 120 chr2R:10272820-10272940 1.0000 120 chr2R:21720284-21720404 1.0000 120 chr2R:7756360-7756480 1.0000 120 chr3L:14564553-14564673 1.0000 120 chr2R:22666920-22667040 1.0000 120 chr3R:9918940-9919060 1.0000 120 chr2R:23378331-23378451 1.0000 120 chr3R:13714288-13714408 1.0000 120 chr2R:9607137-9607257 1.0000 120 chr3R:10412911-10413031 1.0000 120 chr2R:13940706-13940826 1.0000 120 chr3R:10076814-10076934 1.0000 120 chr2L:14599347-14599467 1.0000 120 chrX:16091832-16091952 1.0000 120 chr3L:17590520-17590640 1.0000 120 chr3R:21589571-21589691 1.0000 120 chr3R:10080994-10081114 1.0000 120 chr3R:19643079-19643199 1.0000 120 chr3R:19135162-19135282 1.0000 120 chr2R:14982022-14982142 1.0000 120 chr3L:5807559-5807679 1.0000 120 chr3L:12798859-12798979 1.0000 120 chr3R:23763217-23763337 1.0000 120 chr2L:2176648-2176768 1.0000 120 chr2L:8196994-8197114 1.0000 120 chr4:557941-558061 1.0000 120 chr3L:11046559-11046679 1.0000 120 chrX:801664-801784 1.0000 120 chr3R:25245516-25245636 1.0000 120 chr3L:18179867-18179987 1.0000 120 chrX:2107957-2108077 1.0000 120 chr2R:16322144-16322264 1.0000 120 chr3R:5694592-5694712 1.0000 120 chr3L:247974-248094 1.0000 120 chr3L:16714254-16714374 1.0000 120 chrX:12577826-12577946 1.0000 120 chr2R:16344393-16344513 1.0000 120 chr3R:26876594-26876714 1.0000 120 chrX:4117487-4117607 1.0000 120 chr2R:20640821-20640941 1.0000 120 chr3R:21193744-21193864 1.0000 120 chr2L:4915772-4915892 1.0000 120 chr3L:607073-607193 1.0000 120 chr3L:11689923-11690043 1.0000 120 chr3L:3159676-3159796 1.0000 120 chrX:11350530-11350650 1.0000 120 chrX:9047126-9047246 1.0000 120 chrX:8243325-8243445 1.0000 120 chr3L:21412277-21412397 1.0000 120 chrX:6759376-6759496 1.0000 120 chr3R:25493416-25493536 1.0000 120 chr3R:28580594-28580714 1.0000 120 chr3L:11528774-11528894 1.0000 120 chr2L:3058314-3058434 1.0000 120 chrX:6344391-6344511 1.0000 120 chr2R:6715775-6715895 1.0000 120 chr2L:8198878-8198998 1.0000 120 chr3R:10131162-10131282 1.0000 120 chr2L:5325085-5325205 1.0000 120 chr3R:19924472-19924592 1.0000 120 chr2R:24571734-24571854 1.0000 120 chr2L:5724557-5724677 1.0000 120 chrX:6220344-6220464 1.0000 120 chr3R:23164298-23164418 1.0000 120 chr2R:7653920-7654040 1.0000 120 chr2R:6115399-6115519 1.0000 120 chrX:3720408-3720528 1.0000 120 chr3L:11070472-11070592 1.0000 120 chr2R:16162581-16162701 1.0000 120 chr2R:7731366-7731486 1.0000 120 chrX:1476988-1477108 1.0000 120 chr2L:4829191-4829311 1.0000 120 chr2R:21481823-21481943 1.0000 120 chr3R:12439513-12439633 1.0000 120 chr3R:30802959-30803079 1.0000 120 chr2R:14175135-14175255 1.0000 120 chr3R:24651268-24651388 1.0000 120 chr2R:17686727-17686847 1.0000 120 chr2L:435521-435641 1.0000 120 chrX:4918616-4918736 1.0000 120 chrX:11441163-11441283 1.0000 120 chrX:11359125-11359245 1.0000 120 chr3R:24046748-24046868 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Crg-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Crg-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.298 C 0.208 G 0.202 T 0.292 Background letter frequencies (from file dataset with add-one prior applied): A 0.298 C 0.208 G 0.202 T 0.292 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGTGYTG MEME-1 width = 8 sites = 26 llr = 250 E-value = 1.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::1: pos.-specific C a::::5:1 probability G ::a1a::9 matrix T :::9:59: bits 2.3 * * * 2.1 * * * 1.8 * * * * 1.6 *** * * Relative 1.4 ***** ** Entropy 1.2 ***** ** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1476988-1477108 74 9.06e-06 CGAGATAAAC CAGTGCTG TAAAGCGCCG chr2R:6115399-6115519 95 9.06e-06 CATTATCAGT CAGTGCTG GTATCTACAA chr3R:25493416-25493536 51 9.06e-06 TCGCAATGTA CAGTGCTG CATAATCCAT chr3R:10080994-10081114 49 9.06e-06 gcTACCTACA CAGTGCTG GCGAAATGTT chr3L:19096172-19096292 40 9.06e-06 GCGAGAAGAC CAGTGCTG CAAAACACCA chrX:11136996-11137116 84 9.06e-06 GCAGCGCAAA CAGTGCTG GCAATCAGCC chr2R:16322144-16322264 18 2.18e-05 TCGTTATCGG CAGTGTTG GTAAAGGCCC chrX:801664-801784 80 2.18e-05 GGTAAACTGA CAGTGTTG GTTAGCGTTC chr3R:19643079-19643199 53 2.18e-05 TCGCCATCGC CAGTGTTG AGCACCGATG chr2R:9607137-9607257 100 2.18e-05 AGCATAAAAC CAGTGTTG CAAGGTGACA chrX:11806359-11806479 95 2.18e-05 AGTGGTAGAT CAGTGTTG GAAAGCACGC chr3R:23996344-23996464 54 2.18e-05 TGTTGTCTGG CAGTGTTG TAAAACTCGC chr2L:19530241-19530361 60 2.18e-05 CTGTCTATTA CAGTGTTG CATGATAACC chr2R:13205351-13205471 21 2.18e-05 AAACGGGCGG CAGTGTTG GCTAACGACT chr2L:1732314-1732434 12 2.18e-05 CGTGCAAGTA CAGTGTTG AACAGCGTTC chr2L:8348405-8348525 42 2.18e-05 GCAATTACGC CAGTGTTG CCACGCCGAT chr2R:8891335-8891455 63 2.18e-05 ACGAAAACTA CAGTGTTG ACTAACTTAG chrX:4117487-4117607 39 3.74e-05 ACAACAGCCG CAGGGCTG CCAACTCGAT chr3R:26876594-26876714 38 3.74e-05 GGCTGAGCAC CAGGGCTG CATTATTGTT chr3R:19135162-19135282 61 3.74e-05 TAAAAGTTCG CAGTGCTC TATCATTAAT chr2L:20431366-20431486 66 3.74e-05 GTGGGCGCTC CAGTGCTC GTACTCTGGG chr3R:29138459-29138579 52 7.73e-05 GTAATGTAAA CAGTGTTC AAATGCATTT chr3R:7076727-7076847 26 7.73e-05 CAAGATTTGC CAGTGGTG GGGTGATGTC chr3L:4411386-4411506 61 7.73e-05 AAATTCCACT CAGTGCAG CTGAAAAATG chr3R:14070217-14070337 44 7.73e-05 TGCAATTGAC CAGTGCAG CTCTGCAAAT chr2R:10151174-10151294 111 8.35e-05 ATTTGCATTT CGGTGCTG AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1476988-1477108 9.1e-06 73_[+1]_39 chr2R:6115399-6115519 9.1e-06 94_[+1]_18 chr3R:25493416-25493536 9.1e-06 50_[+1]_62 chr3R:10080994-10081114 9.1e-06 48_[+1]_64 chr3L:19096172-19096292 9.1e-06 39_[+1]_73 chrX:11136996-11137116 9.1e-06 83_[+1]_29 chr2R:16322144-16322264 2.2e-05 17_[+1]_95 chrX:801664-801784 2.2e-05 79_[+1]_33 chr3R:19643079-19643199 2.2e-05 52_[+1]_60 chr2R:9607137-9607257 2.2e-05 99_[+1]_13 chrX:11806359-11806479 2.2e-05 94_[+1]_18 chr3R:23996344-23996464 2.2e-05 53_[+1]_59 chr2L:19530241-19530361 2.2e-05 59_[+1]_53 chr2R:13205351-13205471 2.2e-05 20_[+1]_92 chr2L:1732314-1732434 2.2e-05 11_[+1]_101 chr2L:8348405-8348525 2.2e-05 41_[+1]_71 chr2R:8891335-8891455 2.2e-05 62_[+1]_50 chrX:4117487-4117607 3.7e-05 38_[+1]_74 chr3R:26876594-26876714 3.7e-05 37_[+1]_75 chr3R:19135162-19135282 3.7e-05 60_[+1]_52 chr2L:20431366-20431486 3.7e-05 65_[+1]_47 chr3R:29138459-29138579 7.7e-05 51_[+1]_61 chr3R:7076727-7076847 7.7e-05 25_[+1]_87 chr3L:4411386-4411506 7.7e-05 60_[+1]_52 chr3R:14070217-14070337 7.7e-05 43_[+1]_69 chr2R:10151174-10151294 8.3e-05 110_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGYTG width=8 seqs=26 chrX:1476988-1477108 ( 74) CAGTGCTG 1 chr2R:6115399-6115519 ( 95) CAGTGCTG 1 chr3R:25493416-25493536 ( 51) CAGTGCTG 1 chr3R:10080994-10081114 ( 49) CAGTGCTG 1 chr3L:19096172-19096292 ( 40) CAGTGCTG 1 chrX:11136996-11137116 ( 84) CAGTGCTG 1 chr2R:16322144-16322264 ( 18) CAGTGTTG 1 chrX:801664-801784 ( 80) CAGTGTTG 1 chr3R:19643079-19643199 ( 53) CAGTGTTG 1 chr2R:9607137-9607257 ( 100) CAGTGTTG 1 chrX:11806359-11806479 ( 95) CAGTGTTG 1 chr3R:23996344-23996464 ( 54) CAGTGTTG 1 chr2L:19530241-19530361 ( 60) CAGTGTTG 1 chr2R:13205351-13205471 ( 21) CAGTGTTG 1 chr2L:1732314-1732434 ( 12) CAGTGTTG 1 chr2L:8348405-8348525 ( 42) CAGTGTTG 1 chr2R:8891335-8891455 ( 63) CAGTGTTG 1 chrX:4117487-4117607 ( 39) CAGGGCTG 1 chr3R:26876594-26876714 ( 38) CAGGGCTG 1 chr3R:19135162-19135282 ( 61) CAGTGCTC 1 chr2L:20431366-20431486 ( 66) CAGTGCTC 1 chr3R:29138459-29138579 ( 52) CAGTGTTC 1 chr3R:7076727-7076847 ( 26) CAGTGGTG 1 chr3L:4411386-4411506 ( 61) CAGTGCAG 1 chr3R:14070217-14070337 ( 44) CAGTGCAG 1 chr2R:10151174-10151294 ( 111) CGGTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 1.5e-005 -1134 227 -1134 -1134 169 -1134 -239 -1134 -1134 -1134 231 -1134 -1134 -1134 -139 166 -1134 -1134 231 -1134 -1134 127 -239 66 -195 -1134 -1134 166 -1134 -85 213 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.5e-005 0.000000 1.000000 0.000000 0.000000 0.961538 0.000000 0.038462 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.038462 0.461538 0.076923 0.000000 0.000000 0.923077 0.000000 0.115385 0.884615 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-1 regular expression -------------------------------------------------------------------------------- CAGTG[CT]TG -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TRTTTRYW MEME-2 width = 8 sites = 110 llr = 744 E-value = 6.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4:::5:3 pos.-specific C ::::::62 probability G :5::15:: matrix T a1aa9:45 bits 2.3 2.1 1.8 * ** 1.6 * ** Relative 1.4 * *** Entropy 1.2 * *** * (9.8 bits) 0.9 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTACT consensus A GTA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15304874-15304994 6 1.80e-05 AGTTT TGTTTGCT TGTCTTTTAT chr2R:10052736-10052856 69 1.80e-05 GGCGTCTGTT TGTTTGCT CGGTTAATTG chr2L:20431366-20431486 16 1.80e-05 ATAACAATCT TGTTTGCT GTTTGCACTT chr2L:9526623-9526743 2 1.80e-05 T TGTTTGCT TCTGGCTTCC chr2L:19530241-19530361 34 4.46e-05 TTACTTCGTT TGTTTACT GGAAACAGCT chr2R:14361940-14362060 51 4.46e-05 TTCGGGCGCT TGTTTACT CATTTTTTAA chr3R:19068015-19068135 31 4.46e-05 CCGCTTAACT TGTTTACT TTTGCATCAA chrX:9355497-9355617 89 4.46e-05 CCATTTGAGT TGTTTACT TTATTTTAAA chrX:8473496-8473616 45 4.46e-05 AAAACTAAAA TGTTTACT TTCCGTTCGC chr2R:19304005-19304125 94 4.46e-05 TTTGGCCAAA TGTTTACT TTTAGCCCCT chr3R:9918940-9919060 97 7.58e-05 TTGTTGGCCA TGTTTGCC TGTATTTACT chr2R:21649072-21649192 85 7.58e-05 TGCACTTCCC TGTTTGCA TTGCCGTTTA chr2R:16732782-16732902 24 7.58e-05 CTCAAGTTTC TGTTTGCA CAACTGCATT chr2L:5304420-5304540 31 7.58e-05 AACAACTCGT TGTTTGCC TAGTGTAGTA chr2L:18459808-18459928 21 7.58e-05 CTGCGGAAAA TGTTTGCA AATTGAGTTT chr2R:13025531-13025651 95 7.58e-05 GATTAGGTAA TGTTTGCC ATACTCGAAG chr3R:9951161-9951281 63 7.58e-05 GAGGTGGGGG TGTTTGCC GAGTGGGAAA chr3L:11528774-11528894 61 1.02e-04 TGTTCCCCAT TATTTGCT GGGAGGCGGC chr3L:3159676-3159796 40 1.02e-04 TTTTTTGGAA TATTTGCT TAAATGATTT chr3L:12798859-12798979 24 1.02e-04 GTGGTCGCCT TATTTGCT TTCAACTTAA chr3R:22518443-22518563 79 1.02e-04 GGCGTGTCAA TATTTGCT TTATTTAACT chr3R:7217323-7217443 93 1.02e-04 AAGGTGACAA TATTTGCT TAAGATTGGC chr3R:5839072-5839192 79 1.02e-04 TCGAAGCCCC TATTTGCT TGGGTATTTG chr2L:7047892-7048012 1 1.02e-04 . TATTTGCT TTCGATATAC chr3R:26876594-26876714 52 1.28e-04 GCTGCATTAT TGTTTGTT AGTTTTGCTG chr2R:9098463-9098583 89 1.28e-04 TACCCATCAC TGTTTGTT TGGAATAGAT chrX:3675730-3675850 73 1.28e-04 GGGCACTTGT TGTTTGTT CGTAGAGAGA chr2L:482613-482733 45 1.28e-04 ACACAGTTTC TGTTTGTT GGCCTCTGCT chr2L:135126-135246 56 1.28e-04 CAGTTAGCGG TGTTTGTT TGGCTCTGCT chr2R:7256367-7256487 33 1.28e-04 TCAGCAGTTC TGTTTGTT TTTCTGGGCT chr2L:5946891-5947011 47 1.28e-04 TACTTTAAGT TGTTTGTT TTATGTAAGG chrX:4918616-4918736 84 1.74e-04 TGATGAAACG TGTTTACA TTAATTACGA chr2L:3058314-3058434 62 1.74e-04 TTGTCACCCG TGTTTACA TATCCAATGA chr3R:28580594-28580714 80 1.74e-04 CCTGGTTGTT TGTTTACC TTCTTGTTCC chr2R:14982022-14982142 96 1.74e-04 TACAAAAATA TGTTTACA ACTTACAAGC chr3L:3209069-3209189 5 1.74e-04 TCGG TGTTTACA CACGGCAATG chr2L:8007405-8007525 44 1.74e-04 ACCCCGGCTT TGTTTACA TGGCTGACCC chrX:8576091-8576211 31 1.74e-04 CCCTCTTTGT TGTTTACA CTGGTTTTAT chrX:15308590-15308710 13 1.74e-04 TTATGACCGC TGTTTACC CGCCACTCGA chr3R:29066465-29066585 34 1.74e-04 GTTTTGGCAG TGTTTACA TTGGAAACGT chr3R:23519827-23519947 110 1.74e-04 AATATCTCAG TGTTTACC ATC chr2R:24195510-24195630 51 1.74e-04 AATCCATTGT TGTTTACA CAGCGCTTTA chr2R:6993999-6994119 44 1.74e-04 AGACAGCATT TGTTTACA AACCCTCGAG chrX:9395039-9395159 30 2.13e-04 GCAGTATTGA TATTTACT GAGCTGTGCA chr3R:21522380-21522500 41 2.50e-04 CTTTGCCAGT TGTTTATT CTGAGAGATT chrX:11426037-11426157 1 2.50e-04 . TGTTTATT TGGAATCGAA chr3L:17401037-17401157 65 2.50e-04 TTTGCTTTCT TGTTTATT TAGCTGCTCC chr2R:16617518-16617638 9 2.50e-04 CGATTTGT TGTTTATT TGATATGTTT chr3R:8654221-8654341 28 2.50e-04 GCGCCCACGC TGTTTATT ATTTCAAAAT chr2R:16162581-16162701 83 2.96e-04 AAGAAGTGTT TATTTGCC CCGAGCGATC chrX:801664-801784 55 2.96e-04 TGCACAATGC TATTTGCA TGTGTGCGGT chr2L:1970810-1970930 88 2.96e-04 CGTGTGTACA TATTTGCA CTGCAATTTG chrX:13814190-13814310 53 2.96e-04 ACTAAGTCAA TATTTGCC CACTGCTTTC chrX:11373503-11373623 50 2.96e-04 CTCATAAAAA TATTTGCA TATTGAAGAA chr3L:19504817-19504937 76 2.96e-04 CTGCACTAAT TATTTGCC TTGTCTCACT chr2R:19461631-19461751 17 3.40e-04 TTAGTTTGTG TGTTTGTA TCCGACATGC chr3L:18179867-18179987 113 3.77e-04 TACACGAGCT TATTTGTT chr3R:21193744-21193864 71 4.45e-04 ATATAGTTTA TATTTACC GAGTGCACAC chr2R:20640821-20640941 89 4.45e-04 AATTACCCGC TATTTACC ACAGACGTTT chr3R:28587168-28587288 89 4.45e-04 AATGTGtact tatttacc tttagtcatt chr3R:18438339-18438459 26 4.45e-04 TTGCAGTTTT TATTTACA CTTGCGCTTT chr2R:14986478-14986598 84 4.45e-04 GTTTTTATGA TATTTACC CATTGGAGAA chrX:14805885-14806005 51 4.45e-04 TCAACGCCTC TATTTACA CGTTCCCTGG chr2L:8348405-8348525 69 4.45e-04 TAGGTGACTC TATTTACC TGTTGGCACC chrX:9576613-9576733 23 4.45e-04 GTATGCCCCA TATTTACA TTTGCCAAAC chr2R:17715250-17715370 103 4.45e-04 ATAATGGGCT TATTTACC ATATTCGATA chr3R:14734565-14734685 36 4.45e-04 GCATCTTGGA TATTTACA TTTGATAATG chr2R:6115399-6115519 22 5.36e-04 TACTGTATTT TGTTTATA TTAGGAACAA chr3R:21589571-21589691 47 5.36e-04 GTGGTTTTGT TGTTTATC AAAGTGTTAA chr3R:10330795-10330915 49 5.36e-04 ATATTGCTAT TTTTTGCT GTGTGGGTTC chr3R:25678690-25678810 39 5.36e-04 TTTTGAGAAC TTTTTGCT TCGTAGTTGT chr3L:7338999-7339119 49 5.36e-04 TTTACTGCAA TGTTTATA TATATTAAAT chr3R:5694592-5694712 74 5.91e-04 ATTTATTGGG TATTTATT TATCATGAAC chrX:3667372-3667492 10 5.91e-04 TAACATACC TATTTATT AATCCCAATG chr3R:5262106-5262226 100 5.91e-04 AATACTCGCT TATTTATT TTGCTTTGCA chrX:19762379-19762499 59 5.91e-04 GGAATTTAAA TATTTATT TGAAAACAAA chr3R:21195673-21195793 59 5.91e-04 CACTTTTATA TATTTATT TCACTTTTTC chr3R:17214897-17215017 86 5.91e-04 GCGAGCTTCT TATTTATT TTTTTCTATT chr3L:21908974-21909094 87 5.91e-04 AATGGCTGCT TATTTATT TAATAACAGT chr3R:9010841-9010961 18 6.42e-04 CTCTATCAGC TGTTGGCT TAGTGCCAGC chr3R:19924472-19924592 2 7.07e-04 T TATTTGTC GAGGGCAAAT chr2R:6050209-6050329 77 7.07e-04 AGATTGTACA TATTTGTA ACGCTGTTCT chr2R:17271309-17271429 62 7.07e-04 GCGTGTAGAA TATTTGTA AGTTATTACT chrX:13972557-13972677 84 7.07e-04 GGAATTAGAA TATTTGTA AGAAAATTTA chr2R:17686727-17686847 32 7.70e-04 GCTATTGGCT TGTTGACT TATCAGAATC chr3L:11689923-11690043 70 7.70e-04 CCTGGTTAGG TGTTGACT GATCCCCTTC chrX:2107957-2108077 34 7.70e-04 TTGCCTTTGG TTTTTGCC AGATGTTGGG chr3L:18790672-18790792 12 7.70e-04 TGCCGCAACA TTTTTGCA AAGCAGCGCG chr2R:21236768-21236888 27 7.70e-04 TACATTTGTC TTTTTGCA AATTAATTTA chr2L:16318411-16318531 27 7.70e-04 GGACTCGCCT TGTTGACT TTCTTTCGAG chr2R:6693161-6693281 23 8.66e-04 AAATTTTAAT TATTTATC AAGAACTACA chr2L:3030408-3030528 3 8.66e-04 AT TATTTATA ACACAATTCT chrX:7691572-7691692 113 8.66e-04 TTTTATATCT TATTTATA chrX:1900288-1900408 22 8.66e-04 CAATTCACAA TATTTATA ATTTAGCTAA chrX:6220344-6220464 100 9.02e-04 ACGATTGTCG TTTTTGTT CAGTTTAAAT chrX:16091832-16091952 89 9.02e-04 TTTTAATCAA TTTTTGTT TTGATAAATT chr2R:10272820-10272940 55 9.02e-04 AAAGTCAAAA TTTTTGTT ATTACCCTAT chr3L:17625132-17625252 74 9.02e-04 TTAGTCTAGC TTTTTGTT TATGTACAAA chr3R:14654545-14654665 100 9.02e-04 TTCTTTTAGC TTTTTGTT TAGTTTTGTT chr2R:16867363-16867483 90 9.02e-04 ACTTGTTTTT TTTTTGTT CTGTTTGACC chr3R:20955294-20955414 86 9.02e-04 GAACAGACCT TTTTTGTT TAGGACACTC chr2R:16127261-16127381 72 9.02e-04 TCGCACAAGG TTTTTGTT TTGCCATTTC chr2R:13409918-13410038 65 9.90e-04 GAAAGTATCA TTTTTACC TATTTAGTAA chr3R:14680519-14680639 5 9.90e-04 CCAC TGTTGGCC TCGTCATCAA chr3L:9059898-9060018 36 1.11e-03 ATTTCGTTAC TGTTGACA CACAGTTGAG chr4:558721-558841 4 1.17e-03 AAC TGTTTTCT TGGGTAGTCG chr2L:14501731-14501851 92 1.17e-03 GCAACGTCTG TGTTTTCT TTAATAACAT chr3R:7522761-7522881 38 1.17e-03 ATCTAATAAT TATTGACT CACAACGAGT chrX:4117487-4117607 101 1.25e-03 GGCAATCTCG TGTTGATT AGTAAGATGC chrX:17183628-17183748 57 1.53e-03 CATATGCATG TGTTTTCA GCTGGAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15304874-15304994 1.8e-05 5_[+2]_107 chr2R:10052736-10052856 1.8e-05 68_[+2]_44 chr2L:20431366-20431486 1.8e-05 15_[+2]_97 chr2L:9526623-9526743 1.8e-05 1_[+2]_111 chr2L:19530241-19530361 4.5e-05 33_[+2]_79 chr2R:14361940-14362060 4.5e-05 50_[+2]_62 chr3R:19068015-19068135 4.5e-05 30_[+2]_82 chrX:9355497-9355617 4.5e-05 88_[+2]_24 chrX:8473496-8473616 4.5e-05 44_[+2]_68 chr2R:19304005-19304125 4.5e-05 93_[+2]_19 chr3R:9918940-9919060 7.6e-05 96_[+2]_16 chr2R:21649072-21649192 7.6e-05 84_[+2]_28 chr2R:16732782-16732902 7.6e-05 23_[+2]_89 chr2L:5304420-5304540 7.6e-05 30_[+2]_82 chr2L:18459808-18459928 7.6e-05 20_[+2]_92 chr2R:13025531-13025651 7.6e-05 94_[+2]_18 chr3R:9951161-9951281 7.6e-05 62_[+2]_50 chr3L:11528774-11528894 0.0001 60_[+2]_52 chr3L:3159676-3159796 0.0001 39_[+2]_73 chr3L:12798859-12798979 0.0001 23_[+2]_89 chr3R:22518443-22518563 0.0001 78_[+2]_34 chr3R:7217323-7217443 0.0001 92_[+2]_20 chr3R:5839072-5839192 0.0001 78_[+2]_34 chr2L:7047892-7048012 0.0001 [+2]_112 chr3R:26876594-26876714 0.00013 51_[+2]_61 chr2R:9098463-9098583 0.00013 88_[+2]_24 chrX:3675730-3675850 0.00013 72_[+2]_40 chr2L:482613-482733 0.00013 44_[+2]_68 chr2L:135126-135246 0.00013 55_[+2]_57 chr2R:7256367-7256487 0.00013 32_[+2]_80 chr2L:5946891-5947011 0.00013 46_[+2]_66 chrX:4918616-4918736 0.00017 83_[+2]_29 chr2L:3058314-3058434 0.00017 61_[+2]_51 chr3R:28580594-28580714 0.00017 79_[+2]_33 chr2R:14982022-14982142 0.00017 95_[+2]_17 chr3L:3209069-3209189 0.00017 4_[+2]_108 chr2L:8007405-8007525 0.00017 43_[+2]_69 chrX:8576091-8576211 0.00017 30_[+2]_82 chrX:15308590-15308710 0.00017 12_[+2]_100 chr3R:29066465-29066585 0.00017 33_[+2]_79 chr3R:23519827-23519947 0.00017 109_[+2]_3 chr2R:24195510-24195630 0.00017 50_[+2]_62 chr2R:6993999-6994119 0.00017 43_[+2]_69 chrX:9395039-9395159 0.00021 29_[+2]_83 chr3R:21522380-21522500 0.00025 40_[+2]_72 chrX:11426037-11426157 0.00025 [+2]_112 chr3L:17401037-17401157 0.00025 64_[+2]_48 chr2R:16617518-16617638 0.00025 8_[+2]_104 chr3R:8654221-8654341 0.00025 27_[+2]_85 chr2R:16162581-16162701 0.0003 82_[+2]_30 chrX:801664-801784 0.0003 54_[+2]_58 chr2L:1970810-1970930 0.0003 87_[+2]_25 chrX:13814190-13814310 0.0003 52_[+2]_60 chrX:11373503-11373623 0.0003 49_[+2]_63 chr3L:19504817-19504937 0.0003 75_[+2]_37 chr2R:19461631-19461751 0.00034 16_[+2]_96 chr3L:18179867-18179987 0.00038 112_[+2] chr3R:21193744-21193864 0.00045 70_[+2]_42 chr2R:20640821-20640941 0.00045 88_[+2]_24 chr3R:28587168-28587288 0.00045 88_[+2]_24 chr3R:18438339-18438459 0.00045 25_[+2]_87 chr2R:14986478-14986598 0.00045 83_[+2]_29 chrX:14805885-14806005 0.00045 50_[+2]_62 chr2L:8348405-8348525 0.00045 68_[+2]_44 chrX:9576613-9576733 0.00045 22_[+2]_90 chr2R:17715250-17715370 0.00045 102_[+2]_10 chr3R:14734565-14734685 0.00045 35_[+2]_77 chr2R:6115399-6115519 0.00054 21_[+2]_91 chr3R:21589571-21589691 0.00054 46_[+2]_66 chr3R:10330795-10330915 0.00054 48_[+2]_64 chr3R:25678690-25678810 0.00054 38_[+2]_74 chr3L:7338999-7339119 0.00054 48_[+2]_64 chr3R:5694592-5694712 0.00059 73_[+2]_39 chrX:3667372-3667492 0.00059 9_[+2]_103 chr3R:5262106-5262226 0.00059 99_[+2]_13 chrX:19762379-19762499 0.00059 58_[+2]_54 chr3R:21195673-21195793 0.00059 58_[+2]_54 chr3R:17214897-17215017 0.00059 85_[+2]_27 chr3L:21908974-21909094 0.00059 86_[+2]_26 chr3R:9010841-9010961 0.00064 17_[+2]_95 chr3R:19924472-19924592 0.00071 1_[+2]_111 chr2R:6050209-6050329 0.00071 76_[+2]_36 chr2R:17271309-17271429 0.00071 61_[+2]_51 chrX:13972557-13972677 0.00071 83_[+2]_29 chr2R:17686727-17686847 0.00077 31_[+2]_81 chr3L:11689923-11690043 0.00077 69_[+2]_43 chrX:2107957-2108077 0.00077 33_[+2]_79 chr3L:18790672-18790792 0.00077 11_[+2]_101 chr2R:21236768-21236888 0.00077 26_[+2]_86 chr2L:16318411-16318531 0.00077 26_[+2]_86 chr2R:6693161-6693281 0.00087 22_[+2]_90 chr2L:3030408-3030528 0.00087 2_[+2]_110 chrX:7691572-7691692 0.00087 112_[+2] chrX:1900288-1900408 0.00087 21_[+2]_91 chrX:6220344-6220464 0.0009 99_[+2]_13 chrX:16091832-16091952 0.0009 88_[+2]_24 chr2R:10272820-10272940 0.0009 54_[+2]_58 chr3L:17625132-17625252 0.0009 73_[+2]_39 chr3R:14654545-14654665 0.0009 99_[+2]_13 chr2R:16867363-16867483 0.0009 89_[+2]_23 chr3R:20955294-20955414 0.0009 85_[+2]_27 chr2R:16127261-16127381 0.0009 71_[+2]_41 chr2R:13409918-13410038 0.00099 64_[+2]_48 chr3R:14680519-14680639 0.00099 4_[+2]_108 chr3L:9059898-9060018 0.0011 35_[+2]_77 chr4:558721-558841 0.0012 3_[+2]_109 chr2L:14501731-14501851 0.0012 91_[+2]_21 chr3R:7522761-7522881 0.0012 37_[+2]_75 chrX:4117487-4117607 0.0013 100_[+2]_12 chrX:17183628-17183748 0.0015 56_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTTTRYW width=8 seqs=110 chr2R:15304874-15304994 ( 6) TGTTTGCT 1 chr2R:10052736-10052856 ( 69) TGTTTGCT 1 chr2L:20431366-20431486 ( 16) TGTTTGCT 1 chr2L:9526623-9526743 ( 2) TGTTTGCT 1 chr2L:19530241-19530361 ( 34) TGTTTACT 1 chr2R:14361940-14362060 ( 51) TGTTTACT 1 chr3R:19068015-19068135 ( 31) TGTTTACT 1 chrX:9355497-9355617 ( 89) TGTTTACT 1 chrX:8473496-8473616 ( 45) TGTTTACT 1 chr2R:19304005-19304125 ( 94) TGTTTACT 1 chr3R:9918940-9919060 ( 97) TGTTTGCC 1 chr2R:21649072-21649192 ( 85) TGTTTGCA 1 chr2R:16732782-16732902 ( 24) TGTTTGCA 1 chr2L:5304420-5304540 ( 31) TGTTTGCC 1 chr2L:18459808-18459928 ( 21) TGTTTGCA 1 chr2R:13025531-13025651 ( 95) TGTTTGCC 1 chr3R:9951161-9951281 ( 63) TGTTTGCC 1 chr3L:11528774-11528894 ( 61) TATTTGCT 1 chr3L:3159676-3159796 ( 40) TATTTGCT 1 chr3L:12798859-12798979 ( 24) TATTTGCT 1 chr3R:22518443-22518563 ( 79) TATTTGCT 1 chr3R:7217323-7217443 ( 93) TATTTGCT 1 chr3R:5839072-5839192 ( 79) TATTTGCT 1 chr2L:7047892-7048012 ( 1) TATTTGCT 1 chr3R:26876594-26876714 ( 52) TGTTTGTT 1 chr2R:9098463-9098583 ( 89) TGTTTGTT 1 chrX:3675730-3675850 ( 73) TGTTTGTT 1 chr2L:482613-482733 ( 45) TGTTTGTT 1 chr2L:135126-135246 ( 56) TGTTTGTT 1 chr2R:7256367-7256487 ( 33) TGTTTGTT 1 chr2L:5946891-5947011 ( 47) TGTTTGTT 1 chrX:4918616-4918736 ( 84) TGTTTACA 1 chr2L:3058314-3058434 ( 62) TGTTTACA 1 chr3R:28580594-28580714 ( 80) TGTTTACC 1 chr2R:14982022-14982142 ( 96) TGTTTACA 1 chr3L:3209069-3209189 ( 5) TGTTTACA 1 chr2L:8007405-8007525 ( 44) TGTTTACA 1 chrX:8576091-8576211 ( 31) TGTTTACA 1 chrX:15308590-15308710 ( 13) TGTTTACC 1 chr3R:29066465-29066585 ( 34) TGTTTACA 1 chr3R:23519827-23519947 ( 110) TGTTTACC 1 chr2R:24195510-24195630 ( 51) TGTTTACA 1 chr2R:6993999-6994119 ( 44) TGTTTACA 1 chrX:9395039-9395159 ( 30) TATTTACT 1 chr3R:21522380-21522500 ( 41) TGTTTATT 1 chrX:11426037-11426157 ( 1) TGTTTATT 1 chr3L:17401037-17401157 ( 65) TGTTTATT 1 chr2R:16617518-16617638 ( 9) TGTTTATT 1 chr3R:8654221-8654341 ( 28) TGTTTATT 1 chr2R:16162581-16162701 ( 83) TATTTGCC 1 chrX:801664-801784 ( 55) TATTTGCA 1 chr2L:1970810-1970930 ( 88) TATTTGCA 1 chrX:13814190-13814310 ( 53) TATTTGCC 1 chrX:11373503-11373623 ( 50) TATTTGCA 1 chr3L:19504817-19504937 ( 76) TATTTGCC 1 chr2R:19461631-19461751 ( 17) TGTTTGTA 1 chr3L:18179867-18179987 ( 113) TATTTGTT 1 chr3R:21193744-21193864 ( 71) TATTTACC 1 chr2R:20640821-20640941 ( 89) TATTTACC 1 chr3R:28587168-28587288 ( 89) TATTTACC 1 chr3R:18438339-18438459 ( 26) TATTTACA 1 chr2R:14986478-14986598 ( 84) TATTTACC 1 chrX:14805885-14806005 ( 51) TATTTACA 1 chr2L:8348405-8348525 ( 69) TATTTACC 1 chrX:9576613-9576733 ( 23) TATTTACA 1 chr2R:17715250-17715370 ( 103) TATTTACC 1 chr3R:14734565-14734685 ( 36) TATTTACA 1 chr2R:6115399-6115519 ( 22) TGTTTATA 1 chr3R:21589571-21589691 ( 47) TGTTTATC 1 chr3R:10330795-10330915 ( 49) TTTTTGCT 1 chr3R:25678690-25678810 ( 39) TTTTTGCT 1 chr3L:7338999-7339119 ( 49) TGTTTATA 1 chr3R:5694592-5694712 ( 74) TATTTATT 1 chrX:3667372-3667492 ( 10) TATTTATT 1 chr3R:5262106-5262226 ( 100) TATTTATT 1 chrX:19762379-19762499 ( 59) TATTTATT 1 chr3R:21195673-21195793 ( 59) TATTTATT 1 chr3R:17214897-17215017 ( 86) TATTTATT 1 chr3L:21908974-21909094 ( 87) TATTTATT 1 chr3R:9010841-9010961 ( 18) TGTTGGCT 1 chr3R:19924472-19924592 ( 2) TATTTGTC 1 chr2R:6050209-6050329 ( 77) TATTTGTA 1 chr2R:17271309-17271429 ( 62) TATTTGTA 1 chrX:13972557-13972677 ( 84) TATTTGTA 1 chr2R:17686727-17686847 ( 32) TGTTGACT 1 chr3L:11689923-11690043 ( 70) TGTTGACT 1 chrX:2107957-2108077 ( 34) TTTTTGCC 1 chr3L:18790672-18790792 ( 12) TTTTTGCA 1 chr2R:21236768-21236888 ( 27) TTTTTGCA 1 chr2L:16318411-16318531 ( 27) TGTTGACT 1 chr2R:6693161-6693281 ( 23) TATTTATC 1 chr2L:3030408-3030528 ( 3) TATTTATA 1 chrX:7691572-7691692 ( 113) TATTTATA 1 chrX:1900288-1900408 ( 22) TATTTATA 1 chrX:6220344-6220464 ( 100) TTTTTGTT 1 chrX:16091832-16091952 ( 89) TTTTTGTT 1 chr2R:10272820-10272940 ( 55) TTTTTGTT 1 chr3L:17625132-17625252 ( 74) TTTTTGTT 1 chr3R:14654545-14654665 ( 100) TTTTTGTT 1 chr2R:16867363-16867483 ( 90) TTTTTGTT 1 chr3R:20955294-20955414 ( 86) TTTTTGTT 1 chr2R:16127261-16127381 ( 72) TTTTTGTT 1 chr2R:13409918-13410038 ( 65) TTTTTACC 1 chr3R:14680519-14680639 ( 5) TGTTGGCC 1 chr3L:9059898-9060018 ( 36) TGTTGACA 1 chr4:558721-558841 ( 4) TGTTTTCT 1 chr2L:14501731-14501851 ( 92) TGTTTTCT 1 chr3R:7522761-7522881 ( 38) TATTGACT 1 chrX:4117487-4117607 ( 101) TGTTGATT 1 chrX:17183628-17183748 ( 57) TGTTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.21064 E= 6.5e-002 -1343 -1343 -1343 177 32 -1343 131 -120 -1343 -1343 -1343 177 -1343 -1343 -1343 177 -1343 -1343 -147 167 75 -1343 123 -342 -1343 159 -1343 35 -4 -6 -1343 80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 6.5e-002 0.000000 0.000000 0.000000 1.000000 0.372727 0.000000 0.500000 0.127273 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.072727 0.927273 0.500000 0.000000 0.472727 0.027273 0.000000 0.627273 0.000000 0.372727 0.290909 0.200000 0.000000 0.509091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYW MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]TTT[AG][CT][TAC] -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF RYAAACAR MEME-3 width = 8 sites = 108 llr = 738 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3199a:a5 pos.-specific C :411:8:2 probability G 7::::::3 matrix T :5:::2:: bits 2.3 2.1 1.8 * * 1.6 * * Relative 1.4 **** Entropy 1.2 * ***** (9.9 bits) 0.9 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTAAACAA consensus AC T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7756360-7756480 28 2.05e-05 TGGCCAAAAG GCAAACAA ACACGGGACA chr3L:2589883-2590003 95 2.05e-05 TGATTGGAAT GCAAACAA GTTGAAAACC chr2R:23672669-23672789 53 2.05e-05 CGGAGCTTAT GCAAACAA CTTGTTATTG chr3R:24265048-24265168 51 2.05e-05 TAATCACTAT GCAAACAA ACAGGTAAAC chr2L:1122270-1122390 71 2.05e-05 CCGCAGCTAA GCAAACAA AGCTGCTCCT chr3R:23519827-23519947 40 2.05e-05 AATAGACAGC GCAAACAA TGGCTTTCGT chr3L:13924738-13924858 93 2.05e-05 AAACACGAGA GCAAACAA ATGTTGCAGG chr3R:8654221-8654341 94 2.05e-05 AATTTATCTG GCAAACAA ACAACGACAA chr3R:9951161-9951281 95 2.05e-05 ATGCACCCCA GCAAACAA TGGATGTGCC chr3L:17419496-17419616 72 3.45e-05 AGTGTGCCAC GCAAACAG GTAAACACTC chrX:16893137-16893257 76 3.45e-05 TGAACGATGT GCAAACAG GGTACTTGGC chr2L:13808063-13808183 104 3.45e-05 ACAAAATGCA GCAAACAG GGGAACAGC chr3L:14564553-14564673 68 6.33e-05 CAAAATTCGT GTAAACAA GGCGGCAATG chr2L:6080536-6080656 98 6.33e-05 TTATCTAGGC GTAAACAA CGTTAACAAG chrX:6698437-6698557 34 6.33e-05 AATGTGGCGA GTAAACAA CAAAAGCGAC chr2R:6050209-6050329 17 6.33e-05 CTGTCTAATA GTAAACAA ATATAAGTTG chr2L:19530241-19530361 2 6.33e-05 C GTAAACAA TTGTGGAATA chr2R:17709259-17709379 33 6.33e-05 GAAAGCTTTG GTAAACAA CACTCGCGAA chr3L:22053468-22053588 73 6.33e-05 AGTTGGCTGA GTAAACAA CTTAAGGCAA chr3L:18790672-18790792 97 8.28e-05 GAAAGGAAGT GTAAACAG AAAGTGCAAT chr2L:14501731-14501851 7 8.28e-05 ACTTAT GTAAACAG CACCTTCGGA chr2L:4829191-4829311 53 9.72e-05 ATTTACGTGT GCAAACAC AACAGCTCAC chr3R:18438339-18438459 65 9.72e-05 TGCTATGAAT GCAAACAC AAAGTTGTTG chr3R:19068015-19068135 81 9.72e-05 AATGGGTTAA GCAAACAC ACTCTCACAA chr3L:5807559-5807679 54 1.17e-04 AATAGCTGTT GTAAACAC TTCTGGGTCC chr2R:14881264-14881384 51 1.17e-04 GTAGAACACT GTAAACAC CTATGACATC chr2R:17676920-17677040 16 1.17e-04 AGCTTAAAAA GTAAACAC TTGTTAGCAA chr3L:16714254-16714374 101 1.48e-04 tacacaaata acaaacaa acgaacaCAG chrX:11426037-11426157 107 1.48e-04 AATTCCCAAT ACAAACAA GAAAAG chr3L:11046559-11046679 63 1.68e-04 GCACGGTTTG ACAAACAG AACAAGAATG chr2R:23378331-23378451 109 1.68e-04 AATGACCACG ACAAACAG TCGA chr2R:10530614-10530734 90 1.68e-04 acacacgcac acaaacaG CTTACAGAGG chrX:8473695-8473815 20 1.68e-04 GAAAACAAAA ACAAACAG AGTGGCCAAG chr3L:21908974-21909094 51 1.68e-04 GCGTCTTTAA ACAAACAG ATAGATAAGC chr3L:11070472-11070592 97 2.11e-04 AATTTAGTTT ATAAACAA CGCTCGCCGG chr2L:3058314-3058434 9 2.11e-04 CCGAGTGC ATAAACAA ACACAGTTTA chrX:12577826-12577946 49 2.11e-04 ATTAGATAAG ATAAACAA AACAGCTGTG chr2R:13940706-13940826 36 2.11e-04 CATTATCCGT ATAAACAA CAAAGGATGG chr3R:14654545-14654665 10 2.11e-04 ATGTCGCCA ATAAACAA ATTTCCAAAA chr3R:15839462-15839582 9 2.11e-04 CTCAAAAT ATAAACAA TAACATTCGC chr3R:17214897-17215017 29 2.11e-04 TCTACAATCA ATAAACAA CAGACAGTTG chr2R:16127261-16127381 47 2.11e-04 GAAAACTCAT ATAAACAA TGGTCGGTCG chr3L:16804733-16804853 53 2.11e-04 TTTGCAGTCA ATAAACAA GCAACATCGC chr3R:24046748-24046868 71 2.54e-04 AAAGCGAATG GCCAACAA TTGACAATAG chr3R:9918940-9919060 19 2.54e-04 GTTTGTGCAA ATAAACAG CCGCAAAATC chr3R:23996344-23996464 93 2.54e-04 GGTGCAACTT ATAAACAG CGTTTTGTGT chr2R:10151174-10151294 86 2.54e-04 TAGAGTGAGA ATAAACAG AATTAAAATT chr3L:16658914-16659034 88 2.54e-04 ATTGGTTTCG ATAAACAG CAAAGTTGTT chrX:17183628-17183748 96 2.54e-04 ACAGAATACA ATAAACAG ACGGTCTGGA chr2R:17420064-17420184 71 2.64e-04 CAACCCAACA GCCAACAG CGCTTCGCAA chr2R:10272820-10272940 101 3.13e-04 TTTTGGCTTG GCAAATAA AACACACAAA chrX:13814190-13814310 76 3.13e-04 CTTTCTATTC GCAAATAA AGTCTTTATC chr3R:18582342-18582462 75 3.13e-04 TGCGAACTGT GTCAACAA TTAATGCGAA chr3R:26260999-26261119 49 3.13e-04 CGGTGCATAG GTCAACAA CACTCGAGAG chr3R:14680519-14680639 72 3.13e-04 TGGACAAAAG GTCAACAA GGCGATTACA chr3L:7835546-7835666 73 3.13e-04 GCATAGATGT GCAAATAA AGCAAATTGT chr3R:28587168-28587288 52 3.46e-04 TAGACTCTCT GCAAATAG TAATGCCAGG chr3R:24039328-24039448 80 3.46e-04 TGCCCCAAAT GTCAACAG GAGTAGGGTT chr2L:16318411-16318531 60 3.46e-04 AATGCGAAAT GCAAATAG CACCCAGCCA chr3R:14070217-14070337 56 3.46e-04 GTGCAGCTCT GCAAATAG GCTGCACCAA chr2R:7673197-7673317 21 3.46e-04 ACCGAGAAAG GCAAATAG TAGGGATCAC chr2R:14175135-14175255 58 4.37e-04 TGGCGAGCaa gtaaataa ataaatagca chr3L:247974-248094 108 4.37e-04 GATAAGCACT GTAAATAA CAGTT chr2R:16322144-16322264 113 4.37e-04 AATTAGTAAA GTAAATAA chr2R:9836859-9836979 113 4.37e-04 ATACTTATCG GAAAACAA chrX:19762379-19762499 68 4.37e-04 ATATTTATTT GAAAACAA ACGTTAAAAC chrX:3447810-3447930 14 4.37e-04 TGCACTGCAA GAAAACAA ATCGAATTAG chrX:8152835-8152955 107 4.37e-04 CCCCCTTGAA ACAAACAC TTACAA chrX:5917154-5917274 84 4.37e-04 GAAAATATTA ACAAACAC ATGAGCCTAA chr2R:13205351-13205471 54 4.37e-04 GGGTATCTTT GAAAACAA GTGTGAAAAG chr3R:11429964-11430084 94 4.37e-04 TAAATAAGTG GTAAATAA ATAGAATAAT chr2R:19461631-19461751 63 4.37e-04 CGTGGTGTAG GTAAATAA GCTTAACTAG chr3R:23164298-23164418 88 4.84e-04 atccagattc gaaaacag atacagatac chr3R:10076814-10076934 2 4.84e-04 A GAAAACAG GATGGCAGCC chr3R:29138459-29138579 73 4.84e-04 TGCATTTTCT GTAAATAG TTAAACAACA chr2R:10556350-10556470 107 4.84e-04 TTTTCGTCGG GTAAATAG GTGCAC chr3L:7841685-7841805 66 4.84e-04 GGCGGATAGG GTAAATAG ACAAAGTAGT chrX:6759376-6759496 79 5.28e-04 ACTGCCAAAC GCACACAA CTGTCGCGTG chr2R:9098463-9098583 7 5.28e-04 TAATTA GCACACAA TTTAATTAAC chrX:11817520-11817640 106 5.28e-04 TAAGAAGCAT ATAAACAC AACATAA chr2R:21236768-21236888 44 5.28e-04 AAATTAATTT ATAAACAC AATTGACATT chr3R:21193744-21193864 83 5.48e-04 TTTACCGAGT GCACACAG TGGGTTTTTG chrX:11806359-11806479 22 5.48e-04 TTCTACGTAC GCACACAG TCATACGCTG chr3L:7338999-7339119 12 5.48e-04 TCGGTCGTTT GCCAACAC ATGCCAGATC chr3L:18179867-18179987 94 5.68e-04 TGCCTTTGGC GTACACAA TTACACGAGC chr2R:6993999-6994119 67 5.68e-04 TCGAGCACAA GTACACAA GTCAGTCTCA chr3R:30802959-30803079 78 6.16e-04 ACTACACTGT GTACACAG ATTTACTAAA chr3L:19096172-19096292 54 6.37e-04 GCTGCAAAAC ACCAACAA CCGAACGGAA chr2L:4915772-4915892 72 7.00e-04 TTAAAAAAAT GTAAATAC GAATCTTAAT chr3R:13714288-13714408 63 7.00e-04 TTCGTTCAGT GTAAATAC GAAACGGATG chr2L:18459808-18459928 69 7.00e-04 AATGTGAAAA GTAAATAC ACGGAGAGAA chr2R:7256367-7256487 80 7.00e-04 TACTTCCAAA GAAAACAC AGTTTAGGCG chr2R:17715250-17715370 12 7.00e-04 AATCGTTTAT GTAAATAC ATGTACAGCA chr2L:435521-435641 106 7.72e-04 TATGGAACTT ATCAACAA CAACAAC chr2R:16162581-16162701 110 7.72e-04 CTGTACAAAT ATCAACAA ATA chr3R:24651268-24651388 39 8.31e-04 TTTCAGATTT GCACACAC ACagagaaag chr3R:21589571-21589691 80 8.31e-04 CAGCGGTTAA ATCAACAG CAACTGTCAA chrX:10847188-10847308 97 8.31e-04 TATAGTTGTA GCACACAC GTACACACTC chrX:7969632-7969752 43 8.31e-04 GGCCGGCGAT ACAAATAG CGCAACTTCG chr2L:8196994-8197114 78 9.34e-04 TTTTAAGCTT ATAAATaa taaaataaaa chr3L:17625132-17625252 31 9.34e-04 AATGAGCGAG ATAAATAA GGAAAAAGTT chr2R:17048874-17048994 59 9.34e-04 ACATTTCCGA ATAAATAA CACAAAGAGG chrX:20492725-20492845 3 1.04e-03 AC AAAAACAG ATTGTTCAGA chrX:11349934-11350054 50 1.04e-03 CATATTCCTC GCCAATAA GCGCACTTTC chr2R:24571734-24571854 111 1.15e-03 TTGACCGTTA ACCAACAC TG chrX:1900288-1900408 108 1.15e-03 ATAAACATTT ACCAACAC AAGCA chr3L:19504817-19504937 25 1.15e-03 GCTTGGCAAA GACAACAA GTAATAAAAT chrX:4117487-4117607 28 1.21e-03 TGTTGCCACT GACAACAG CCGCAGGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7756360-7756480 2.1e-05 27_[+3]_85 chr3L:2589883-2590003 2.1e-05 94_[+3]_18 chr2R:23672669-23672789 2.1e-05 52_[+3]_60 chr3R:24265048-24265168 2.1e-05 50_[+3]_62 chr2L:1122270-1122390 2.1e-05 70_[+3]_42 chr3R:23519827-23519947 2.1e-05 39_[+3]_73 chr3L:13924738-13924858 2.1e-05 92_[+3]_20 chr3R:8654221-8654341 2.1e-05 93_[+3]_19 chr3R:9951161-9951281 2.1e-05 94_[+3]_18 chr3L:17419496-17419616 3.4e-05 71_[+3]_41 chrX:16893137-16893257 3.4e-05 75_[+3]_37 chr2L:13808063-13808183 3.4e-05 103_[+3]_9 chr3L:14564553-14564673 6.3e-05 67_[+3]_45 chr2L:6080536-6080656 6.3e-05 97_[+3]_15 chrX:6698437-6698557 6.3e-05 33_[+3]_79 chr2R:6050209-6050329 6.3e-05 16_[+3]_96 chr2L:19530241-19530361 6.3e-05 1_[+3]_111 chr2R:17709259-17709379 6.3e-05 32_[+3]_80 chr3L:22053468-22053588 6.3e-05 72_[+3]_40 chr3L:18790672-18790792 8.3e-05 96_[+3]_16 chr2L:14501731-14501851 8.3e-05 6_[+3]_106 chr2L:4829191-4829311 9.7e-05 52_[+3]_60 chr3R:18438339-18438459 9.7e-05 64_[+3]_48 chr3R:19068015-19068135 9.7e-05 80_[+3]_32 chr3L:5807559-5807679 0.00012 53_[+3]_59 chr2R:14881264-14881384 0.00012 50_[+3]_62 chr2R:17676920-17677040 0.00012 15_[+3]_97 chr3L:16714254-16714374 0.00015 100_[+3]_12 chrX:11426037-11426157 0.00015 106_[+3]_6 chr3L:11046559-11046679 0.00017 62_[+3]_50 chr2R:23378331-23378451 0.00017 108_[+3]_4 chr2R:10530614-10530734 0.00017 89_[+3]_23 chrX:8473695-8473815 0.00017 19_[+3]_93 chr3L:21908974-21909094 0.00017 50_[+3]_62 chr3L:11070472-11070592 0.00021 96_[+3]_16 chr2L:3058314-3058434 0.00021 8_[+3]_104 chrX:12577826-12577946 0.00021 48_[+3]_64 chr2R:13940706-13940826 0.00021 35_[+3]_77 chr3R:14654545-14654665 0.00021 9_[+3]_103 chr3R:15839462-15839582 0.00021 8_[+3]_104 chr3R:17214897-17215017 0.00021 28_[+3]_84 chr2R:16127261-16127381 0.00021 46_[+3]_66 chr3L:16804733-16804853 0.00021 52_[+3]_60 chr3R:24046748-24046868 0.00025 70_[+3]_42 chr3R:9918940-9919060 0.00025 18_[+3]_94 chr3R:23996344-23996464 0.00025 92_[+3]_20 chr2R:10151174-10151294 0.00025 85_[+3]_27 chr3L:16658914-16659034 0.00025 87_[+3]_25 chrX:17183628-17183748 0.00025 95_[+3]_17 chr2R:17420064-17420184 0.00026 70_[+3]_42 chr2R:10272820-10272940 0.00031 100_[+3]_12 chrX:13814190-13814310 0.00031 75_[+3]_37 chr3R:18582342-18582462 0.00031 74_[+3]_38 chr3R:26260999-26261119 0.00031 48_[+3]_64 chr3R:14680519-14680639 0.00031 71_[+3]_41 chr3L:7835546-7835666 0.00031 72_[+3]_40 chr3R:28587168-28587288 0.00035 51_[+3]_61 chr3R:24039328-24039448 0.00035 79_[+3]_33 chr2L:16318411-16318531 0.00035 59_[+3]_53 chr3R:14070217-14070337 0.00035 55_[+3]_57 chr2R:7673197-7673317 0.00035 20_[+3]_92 chr2R:14175135-14175255 0.00044 57_[+3]_55 chr3L:247974-248094 0.00044 107_[+3]_5 chr2R:16322144-16322264 0.00044 112_[+3] chr2R:9836859-9836979 0.00044 112_[+3] chrX:19762379-19762499 0.00044 67_[+3]_45 chrX:3447810-3447930 0.00044 13_[+3]_99 chrX:8152835-8152955 0.00044 106_[+3]_6 chrX:5917154-5917274 0.00044 83_[+3]_29 chr2R:13205351-13205471 0.00044 53_[+3]_59 chr3R:11429964-11430084 0.00044 93_[+3]_19 chr2R:19461631-19461751 0.00044 62_[+3]_50 chr3R:23164298-23164418 0.00048 87_[+3]_25 chr3R:10076814-10076934 0.00048 1_[+3]_111 chr3R:29138459-29138579 0.00048 72_[+3]_40 chr2R:10556350-10556470 0.00048 106_[+3]_6 chr3L:7841685-7841805 0.00048 65_[+3]_47 chrX:6759376-6759496 0.00053 78_[+3]_34 chr2R:9098463-9098583 0.00053 6_[+3]_106 chrX:11817520-11817640 0.00053 105_[+3]_7 chr2R:21236768-21236888 0.00053 43_[+3]_69 chr3R:21193744-21193864 0.00055 82_[+3]_30 chrX:11806359-11806479 0.00055 21_[+3]_91 chr3L:7338999-7339119 0.00055 11_[+3]_101 chr3L:18179867-18179987 0.00057 93_[+3]_19 chr2R:6993999-6994119 0.00057 66_[+3]_46 chr3R:30802959-30803079 0.00062 77_[+3]_35 chr3L:19096172-19096292 0.00064 53_[+3]_59 chr2L:4915772-4915892 0.0007 71_[+3]_41 chr3R:13714288-13714408 0.0007 62_[+3]_50 chr2L:18459808-18459928 0.0007 68_[+3]_44 chr2R:7256367-7256487 0.0007 79_[+3]_33 chr2R:17715250-17715370 0.0007 11_[+3]_101 chr2L:435521-435641 0.00077 105_[+3]_7 chr2R:16162581-16162701 0.00077 109_[+3]_3 chr3R:24651268-24651388 0.00083 38_[+3]_74 chr3R:21589571-21589691 0.00083 79_[+3]_33 chrX:10847188-10847308 0.00083 96_[+3]_16 chrX:7969632-7969752 0.00083 42_[+3]_70 chr2L:8196994-8197114 0.00093 77_[+3]_35 chr3L:17625132-17625252 0.00093 30_[+3]_82 chr2R:17048874-17048994 0.00093 58_[+3]_54 chrX:20492725-20492845 0.001 2_[+3]_110 chrX:11349934-11350054 0.001 49_[+3]_63 chr2R:24571734-24571854 0.0012 110_[+3]_2 chrX:1900288-1900408 0.0012 107_[+3]_5 chr3L:19504817-19504937 0.0012 24_[+3]_88 chrX:4117487-4117607 0.0012 27_[+3]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RYAAACAR width=8 seqs=108 chr2R:7756360-7756480 ( 28) GCAAACAA 1 chr3L:2589883-2590003 ( 95) GCAAACAA 1 chr2R:23672669-23672789 ( 53) GCAAACAA 1 chr3R:24265048-24265168 ( 51) GCAAACAA 1 chr2L:1122270-1122390 ( 71) GCAAACAA 1 chr3R:23519827-23519947 ( 40) GCAAACAA 1 chr3L:13924738-13924858 ( 93) GCAAACAA 1 chr3R:8654221-8654341 ( 94) GCAAACAA 1 chr3R:9951161-9951281 ( 95) GCAAACAA 1 chr3L:17419496-17419616 ( 72) GCAAACAG 1 chrX:16893137-16893257 ( 76) GCAAACAG 1 chr2L:13808063-13808183 ( 104) GCAAACAG 1 chr3L:14564553-14564673 ( 68) GTAAACAA 1 chr2L:6080536-6080656 ( 98) GTAAACAA 1 chrX:6698437-6698557 ( 34) GTAAACAA 1 chr2R:6050209-6050329 ( 17) GTAAACAA 1 chr2L:19530241-19530361 ( 2) GTAAACAA 1 chr2R:17709259-17709379 ( 33) GTAAACAA 1 chr3L:22053468-22053588 ( 73) GTAAACAA 1 chr3L:18790672-18790792 ( 97) GTAAACAG 1 chr2L:14501731-14501851 ( 7) GTAAACAG 1 chr2L:4829191-4829311 ( 53) GCAAACAC 1 chr3R:18438339-18438459 ( 65) GCAAACAC 1 chr3R:19068015-19068135 ( 81) GCAAACAC 1 chr3L:5807559-5807679 ( 54) GTAAACAC 1 chr2R:14881264-14881384 ( 51) GTAAACAC 1 chr2R:17676920-17677040 ( 16) GTAAACAC 1 chr3L:16714254-16714374 ( 101) ACAAACAA 1 chrX:11426037-11426157 ( 107) ACAAACAA 1 chr3L:11046559-11046679 ( 63) ACAAACAG 1 chr2R:23378331-23378451 ( 109) ACAAACAG 1 chr2R:10530614-10530734 ( 90) ACAAACAG 1 chrX:8473695-8473815 ( 20) ACAAACAG 1 chr3L:21908974-21909094 ( 51) ACAAACAG 1 chr3L:11070472-11070592 ( 97) ATAAACAA 1 chr2L:3058314-3058434 ( 9) ATAAACAA 1 chrX:12577826-12577946 ( 49) ATAAACAA 1 chr2R:13940706-13940826 ( 36) ATAAACAA 1 chr3R:14654545-14654665 ( 10) ATAAACAA 1 chr3R:15839462-15839582 ( 9) ATAAACAA 1 chr3R:17214897-17215017 ( 29) ATAAACAA 1 chr2R:16127261-16127381 ( 47) ATAAACAA 1 chr3L:16804733-16804853 ( 53) ATAAACAA 1 chr3R:24046748-24046868 ( 71) GCCAACAA 1 chr3R:9918940-9919060 ( 19) ATAAACAG 1 chr3R:23996344-23996464 ( 93) ATAAACAG 1 chr2R:10151174-10151294 ( 86) ATAAACAG 1 chr3L:16658914-16659034 ( 88) ATAAACAG 1 chrX:17183628-17183748 ( 96) ATAAACAG 1 chr2R:17420064-17420184 ( 71) GCCAACAG 1 chr2R:10272820-10272940 ( 101) GCAAATAA 1 chrX:13814190-13814310 ( 76) GCAAATAA 1 chr3R:18582342-18582462 ( 75) GTCAACAA 1 chr3R:26260999-26261119 ( 49) GTCAACAA 1 chr3R:14680519-14680639 ( 72) GTCAACAA 1 chr3L:7835546-7835666 ( 73) GCAAATAA 1 chr3R:28587168-28587288 ( 52) GCAAATAG 1 chr3R:24039328-24039448 ( 80) GTCAACAG 1 chr2L:16318411-16318531 ( 60) GCAAATAG 1 chr3R:14070217-14070337 ( 56) GCAAATAG 1 chr2R:7673197-7673317 ( 21) GCAAATAG 1 chr2R:14175135-14175255 ( 58) GTAAATAA 1 chr3L:247974-248094 ( 108) GTAAATAA 1 chr2R:16322144-16322264 ( 113) GTAAATAA 1 chr2R:9836859-9836979 ( 113) GAAAACAA 1 chrX:19762379-19762499 ( 68) GAAAACAA 1 chrX:3447810-3447930 ( 14) GAAAACAA 1 chrX:8152835-8152955 ( 107) ACAAACAC 1 chrX:5917154-5917274 ( 84) ACAAACAC 1 chr2R:13205351-13205471 ( 54) GAAAACAA 1 chr3R:11429964-11430084 ( 94) GTAAATAA 1 chr2R:19461631-19461751 ( 63) GTAAATAA 1 chr3R:23164298-23164418 ( 88) GAAAACAG 1 chr3R:10076814-10076934 ( 2) GAAAACAG 1 chr3R:29138459-29138579 ( 73) GTAAATAG 1 chr2R:10556350-10556470 ( 107) GTAAATAG 1 chr3L:7841685-7841805 ( 66) GTAAATAG 1 chrX:6759376-6759496 ( 79) GCACACAA 1 chr2R:9098463-9098583 ( 7) GCACACAA 1 chrX:11817520-11817640 ( 106) ATAAACAC 1 chr2R:21236768-21236888 ( 44) ATAAACAC 1 chr3R:21193744-21193864 ( 83) GCACACAG 1 chrX:11806359-11806479 ( 22) GCACACAG 1 chr3L:7338999-7339119 ( 12) GCCAACAC 1 chr3L:18179867-18179987 ( 94) GTACACAA 1 chr2R:6993999-6994119 ( 67) GTACACAA 1 chr3R:30802959-30803079 ( 78) GTACACAG 1 chr3L:19096172-19096292 ( 54) ACCAACAA 1 chr2L:4915772-4915892 ( 72) GTAAATAC 1 chr3R:13714288-13714408 ( 63) GTAAATAC 1 chr2L:18459808-18459928 ( 69) GTAAATAC 1 chr2R:7256367-7256487 ( 80) GAAAACAC 1 chr2R:17715250-17715370 ( 12) GTAAATAC 1 chr2L:435521-435641 ( 106) ATCAACAA 1 chr2R:16162581-16162701 ( 110) ATCAACAA 1 chr3R:24651268-24651388 ( 39) GCACACAC 1 chr3R:21589571-21589691 ( 80) ATCAACAG 1 chrX:10847188-10847308 ( 97) GCACACAC 1 chrX:7969632-7969752 ( 43) ACAAATAG 1 chr2L:8196994-8197114 ( 78) ATAAATAA 1 chr3L:17625132-17625252 ( 31) ATAAATAA 1 chr2R:17048874-17048994 ( 59) ATAAATAA 1 chrX:20492725-20492845 ( 3) AAAAACAG 1 chrX:11349934-11350054 ( 50) GCCAATAA 1 chr2R:24571734-24571854 ( 111) ACCAACAC 1 chrX:1900288-1900408 ( 108) ACCAACAC 1 chr3L:19504817-19504937 ( 25) GACAACAA 1 chrX:4117487-4117607 ( 28) GACAACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.22284 E= 1.2e-003 16 -1340 172 -1340 -169 100 -1340 75 151 -49 -1340 -1340 162 -132 -1340 -1340 175 -1340 -1340 -1340 -1340 190 -1340 -40 175 -1340 -1340 -1340 77 -17 60 -1340 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 1.2e-003 0.333333 0.000000 0.666667 0.000000 0.092593 0.416667 0.000000 0.490741 0.851852 0.148148 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.777778 0.000000 0.222222 1.000000 0.000000 0.000000 0.000000 0.509259 0.185185 0.305556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAR MEME-3 regular expression -------------------------------------------------------------------------------- [GA][TC]AAA[CT]A[AG] -------------------------------------------------------------------------------- Time 19.67 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-4 width = 8 sites = 13 llr = 135 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a6:a:::: pos.-specific C ::a::a:: probability G :1::a::a matrix T :3::::a: bits 2.3 * ** * 2.1 * ** * 1.8 * ****** 1.6 * ****** Relative 1.4 * ****** Entropy 1.2 * ****** (15.0 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26876594-26876714 21 1.36e-05 TAGCAGCAGA AACAGCTG GCTGAGCACC chrX:12577826-12577946 57 1.36e-05 AGATAAACAA AACAGCTG TGTGTACTGA chr2R:16322144-16322264 66 1.36e-05 TGAACTGCAA AACAGCTG GCGTTTTGAT chr2R:9098463-9098583 22 1.36e-05 CAATTTAATT AACAGCTG TTGCACCTTA chr2R:17420064-17420184 109 1.36e-05 GCCCCAATCA AACAGCTG AGCG chr4:558721-558841 47 1.36e-05 TGCGATGGTG AACAGCTG ATACATGTCA chr2L:19530241-19530361 45 1.36e-05 GTTTACTGGA AACAGCTG TCTATTACAG chr2R:17048874-17048994 92 1.36e-05 AAATTATGGG AACAGCTG ATAACTGATA chr2R:24571734-24571854 90 2.70e-05 AATCATTTGA ATCAGCTG CTTTTGACCG chr3R:25493416-25493536 12 2.70e-05 AATAACAAAA ATCAGCTG TGCGTAGGTG chrX:8152835-8152955 69 2.70e-05 CAACACTACC ATCAGCTG GGGAAAACCA chr2L:9526623-9526743 104 2.70e-05 CTTTTGTTTT ATCAGCTG CAGAAAGTA chr3R:19643079-19643199 102 3.63e-05 CTTATCACGC AGCAGCTG ACTGCAGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26876594-26876714 1.4e-05 20_[+4]_92 chrX:12577826-12577946 1.4e-05 56_[+4]_56 chr2R:16322144-16322264 1.4e-05 65_[+4]_47 chr2R:9098463-9098583 1.4e-05 21_[+4]_91 chr2R:17420064-17420184 1.4e-05 108_[+4]_4 chr4:558721-558841 1.4e-05 46_[+4]_66 chr2L:19530241-19530361 1.4e-05 44_[+4]_68 chr2R:17048874-17048994 1.4e-05 91_[+4]_21 chr2R:24571734-24571854 2.7e-05 89_[+4]_23 chr3R:25493416-25493536 2.7e-05 11_[+4]_101 chrX:8152835-8152955 2.7e-05 68_[+4]_44 chr2L:9526623-9526743 2.7e-05 103_[+4]_9 chr3R:19643079-19643199 3.6e-05 101_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=13 chr3R:26876594-26876714 ( 21) AACAGCTG 1 chrX:12577826-12577946 ( 57) AACAGCTG 1 chr2R:16322144-16322264 ( 66) AACAGCTG 1 chr2R:9098463-9098583 ( 22) AACAGCTG 1 chr2R:17420064-17420184 ( 109) AACAGCTG 1 chr4:558721-558841 ( 47) AACAGCTG 1 chr2L:19530241-19530361 ( 45) AACAGCTG 1 chr2R:17048874-17048994 ( 92) AACAGCTG 1 chr2R:24571734-24571854 ( 90) ATCAGCTG 1 chr3R:25493416-25493536 ( 12) ATCAGCTG 1 chrX:8152835-8152955 ( 69) ATCAGCTG 1 chr2L:9526623-9526743 ( 104) ATCAGCTG 1 chr3R:19643079-19643199 ( 102) AGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 3.5e+002 175 -1035 -1035 -1035 105 -1035 -139 7 -1035 227 -1035 -1035 175 -1035 -1035 -1035 -1035 -1035 231 -1035 -1035 227 -1035 -1035 -1035 -1035 -1035 177 -1035 -1035 231 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.5e+002 1.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.076923 0.307692 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-4 regular expression -------------------------------------------------------------------------------- A[AT]CAGCTG -------------------------------------------------------------------------------- Time 25.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCCCCA MEME-5 width = 8 sites = 14 llr = 144 E-value = 7.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::1:::a pos.-specific C 1aa79aa: probability G :::11::: matrix T 9::::::: bits 2.3 ** ** 2.1 ** ** 1.8 ** *** 1.6 ** **** Relative 1.4 ** **** Entropy 1.2 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCCCCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14175135-14175255 82 7.05e-06 agcaataaat TCCCCCCA CAGGCAAATC chr3R:10131162-10131282 103 7.05e-06 TAGCGCtcta tcccccca cctactatta chr2L:13098627-13098747 99 7.05e-06 ATTTAATGCA TCCCCCCA ACAGTGGGGA chr3R:9010841-9010961 75 7.05e-06 TTGCTCCAGC TCCCCCCA ATCCGCCAGT chr3L:8683060-8683180 91 7.05e-06 CATTCCCAAT TCCCCCCA CTTCCATTTC chr3L:7841685-7841805 102 7.05e-06 CGGTCTGAAA TCCCCCCA GCGCCGGTCA chr3R:21193744-21193864 9 1.21e-05 GGTCTCCA CCCCCCCA AAATGTATCT chr3R:26260999-26261119 19 1.21e-05 GTTCGCGTAG CCCCCCCA CTCCTTCAAC chrX:1041693-1041813 110 1.89e-05 catctattca tccgccca cac chr3L:21059608-21059728 36 1.89e-05 CCTGGAAAAA TCCGCCCA CGCTGACCGC chr2L:6080536-6080656 24 2.58e-05 TGCGAACCAC TCCCGCCA GCCCCCCGCG chr3L:19096172-19096292 89 2.58e-05 CTTAGCTTTT TCCCGCCA ATACCTTTAA chrX:2107957-2108077 102 3.58e-05 TTCATAGAGT TCCACCCA CTGAGTAAAG chrX:13934684-13934804 87 3.58e-05 CACCCACCAG TCCACCCA TACCCCGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14175135-14175255 7e-06 81_[+5]_31 chr3R:10131162-10131282 7e-06 102_[+5]_10 chr2L:13098627-13098747 7e-06 98_[+5]_14 chr3R:9010841-9010961 7e-06 74_[+5]_38 chr3L:8683060-8683180 7e-06 90_[+5]_22 chr3L:7841685-7841805 7e-06 101_[+5]_11 chr3R:21193744-21193864 1.2e-05 8_[+5]_104 chr3R:26260999-26261119 1.2e-05 18_[+5]_94 chrX:1041693-1041813 1.9e-05 109_[+5]_3 chr3L:21059608-21059728 1.9e-05 35_[+5]_77 chr2L:6080536-6080656 2.6e-05 23_[+5]_89 chr3L:19096172-19096292 2.6e-05 88_[+5]_24 chrX:2107957-2108077 3.6e-05 101_[+5]_11 chrX:13934684-13934804 3.6e-05 86_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCCCCA width=8 seqs=14 chr2R:14175135-14175255 ( 82) TCCCCCCA 1 chr3R:10131162-10131282 ( 103) TCCCCCCA 1 chr2L:13098627-13098747 ( 99) TCCCCCCA 1 chr3R:9010841-9010961 ( 75) TCCCCCCA 1 chr3L:8683060-8683180 ( 91) TCCCCCCA 1 chr3L:7841685-7841805 ( 102) TCCCCCCA 1 chr3R:21193744-21193864 ( 9) CCCCCCCA 1 chr3R:26260999-26261119 ( 19) CCCCCCCA 1 chrX:1041693-1041813 ( 110) TCCGCCCA 1 chr3L:21059608-21059728 ( 36) TCCGCCCA 1 chr2L:6080536-6080656 ( 24) TCCCGCCA 1 chr3L:19096172-19096292 ( 89) TCCCGCCA 1 chrX:2107957-2108077 ( 102) TCCACCCA 1 chrX:13934684-13934804 ( 87) TCCACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 7.5e+002 -1045 -54 -1045 155 -1045 227 -1045 -1045 -1045 227 -1045 -1045 -106 178 -50 -1045 -1045 204 -50 -1045 -1045 227 -1045 -1045 -1045 227 -1045 -1045 175 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.5e+002 0.000000 0.142857 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.714286 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCCCA MEME-5 regular expression -------------------------------------------------------------------------------- TCCCCCCA -------------------------------------------------------------------------------- Time 31.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8479275-8479395 3.22e-01 120 chr2R:17676920-17677040 5.08e-02 120 chrX:17183628-17183748 7.49e-03 120 chr2R:7673197-7673317 1.05e-01 120 chr3R:14734565-14734685 5.35e-01 120 chr3R:14070217-14070337 4.62e-02 43_[+1(7.73e-05)]_69 chr2L:7047892-7048012 4.87e-01 120 chrX:9395039-9395159 9.42e-02 120 chr3R:9951161-9951281 1.23e-04 62_[+2(7.58e-05)]_24_[+3(2.05e-05)]_\ 18 chr3R:8654221-8654341 6.71e-03 93_[+3(2.05e-05)]_19 chr2L:16318411-16318531 6.06e-03 69_[+5(8.10e-05)]_43 chr3L:16658914-16659034 2.23e-01 120 chr2R:19304005-19304125 9.60e-02 93_[+2(4.46e-05)]_19 chr3L:7338999-7339119 1.50e-01 120 chr2R:19461631-19461751 1.07e-01 120 chr2R:21236768-21236888 2.75e-01 120 chr2R:16617518-16617638 2.52e-01 120 chrX:8473496-8473616 9.14e-02 44_[+2(4.46e-05)]_68 chr3R:7522761-7522881 8.04e-01 120 chr2L:5946891-5947011 4.25e-01 120 chr3L:17401037-17401157 1.81e-01 120 chr3R:5839072-5839192 1.02e-01 120 chr3L:13924738-13924858 4.18e-02 92_[+3(2.05e-05)]_20 chr3R:11429964-11430084 2.40e-01 120 chr2R:6993999-6994119 1.08e-01 120 chr2R:17715250-17715370 8.44e-02 120 chr3R:24566925-24567045 3.00e-01 120 chrX:9576613-9576733 6.93e-02 120 chr3L:16804733-16804853 9.26e-02 120 chr2R:24195510-24195630 4.77e-02 120 chr3L:11119489-11119609 8.97e-01 120 chr3R:23519827-23519947 3.53e-03 39_[+3(2.05e-05)]_73 chr3R:7217323-7217443 2.21e-01 120 chr3R:24039328-24039448 6.01e-02 120 chrX:11136996-11137116 2.04e-05 83_[+1(9.06e-06)]_29 chr3L:22053468-22053588 5.53e-02 72_[+3(6.33e-05)]_40 chr2L:1122270-1122390 2.37e-02 70_[+3(2.05e-05)]_42 chrX:9355497-9355617 6.42e-02 54_[+2(4.46e-05)]_26_[+2(4.46e-05)]_\ 24 chr3L:4411386-4411506 3.39e-02 60_[+1(7.73e-05)]_52 chr3L:19504817-19504937 1.96e-01 120 chr2R:8891335-8891455 6.16e-04 62_[+1(2.18e-05)]_50 chr2R:16127261-16127381 9.91e-02 120 chr3L:19096172-19096292 1.77e-04 39_[+1(9.06e-06)]_41_[+5(2.58e-05)]_\ 24 chr2R:7256367-7256487 3.98e-03 120 chr3L:21908974-21909094 4.66e-02 120 chr2L:18632556-18632676 1.23e-01 120 chr3R:17214897-17215017 4.08e-02 120 chr3R:5271000-5271120 8.19e-01 120 chr3R:14734770-14734890 5.70e-01 120 chrX:11373503-11373623 2.50e-01 120 chr2L:9526623-9526743 2.00e-03 1_[+2(1.80e-05)]_94_[+4(2.70e-05)]_\ 9 chr2L:8348405-8348525 1.17e-02 41_[+1(2.18e-05)]_71 chrX:1900288-1900408 4.72e-01 120 chrX:14805885-14806005 1.18e-01 120 chr2R:10151174-10151294 3.35e-02 110_[+1(8.35e-05)]_2 chr2R:17709259-17709379 1.03e-01 32_[+3(6.33e-05)]_80 chr2L:14501731-14501851 5.85e-02 6_[+3(8.28e-05)]_106 chrX:20170095-20170215 2.82e-01 120 chr2L:20431366-20431486 1.30e-03 15_[+2(1.80e-05)]_42_[+1(3.74e-05)]_\ 47 chr2L:1732314-1732434 1.80e-02 11_[+1(2.18e-05)]_101 chr3R:29066465-29066585 3.29e-02 120 chr2L:13808063-13808183 2.83e-02 103_[+3(3.45e-05)]_9 chr2R:17048874-17048994 4.49e-02 91_[+4(1.36e-05)]_21 chr2R:13205351-13205471 3.35e-03 20_[+1(2.18e-05)]_92 chrX:10369962-10370082 4.87e-01 120 chr3L:7835546-7835666 3.86e-01 120 chr3L:7841685-7841805 1.23e-02 101_[+5(7.05e-06)]_11 chrX:13972557-13972677 6.99e-01 120 chr2L:135126-135246 1.54e-01 120 chrX:15308590-15308710 1.21e-02 120 chr2R:14986478-14986598 4.85e-01 120 chr3R:22518443-22518563 3.10e-03 120 chr3L:21059608-21059728 5.27e-02 35_[+5(1.89e-05)]_77 chrX:7691572-7691692 6.99e-01 120 chr3R:19068015-19068135 1.26e-02 30_[+2(4.46e-05)]_42_[+3(9.72e-05)]_\ 32 chr3R:7076727-7076847 1.82e-01 25_[+1(7.73e-05)]_87 chr2R:10556350-10556470 1.48e-01 120 chrX:8576091-8576211 5.20e-01 120 chr3R:20955294-20955414 1.76e-01 120 chr3L:8748996-8749116 4.11e-01 120 chr3L:8683060-8683180 5.89e-02 90_[+5(7.05e-06)]_22 chrX:11426037-11426157 1.08e-01 120 chr2R:13025531-13025651 1.52e-01 94_[+2(7.58e-05)]_18 chr2R:17271309-17271429 5.93e-01 120 chrX:5917154-5917274 3.79e-01 120 chr2L:2039318-2039438 2.52e-01 120 chr2L:8007405-8007525 2.19e-01 120 chr3R:9010841-9010961 1.85e-04 11_[+4(2.70e-05)]_55_[+5(7.05e-06)]_\ 38 chrX:17509755-17509875 3.57e-01 120 chrX:8484045-8484165 7.42e-01 120 chrX:11349934-11350054 1.64e-01 120 chrX:8152835-8152955 9.61e-03 68_[+4(2.70e-05)]_44 chr3R:21195673-21195793 1.24e-01 120 chr2R:14361940-14362060 1.05e-01 50_[+2(4.46e-05)]_62 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(5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************