******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CrebB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:21163411-21163531 1.0000 120 chr3R:4746487-4746607 1.0000 120 chr2L:13801311-13801431 1.0000 120 chr3L:18833395-18833515 1.0000 120 chr2L:19548256-19548376 1.0000 120 chr2R:17714497-17714617 1.0000 120 chrX:12667138-12667258 1.0000 120 chr3R:11688312-11688432 1.0000 120 chr3R:23740799-23740919 1.0000 120 chr2L:5547546-5547666 1.0000 120 chr2R:18818495-18818615 1.0000 120 chr2L:6462279-6462399 1.0000 120 chr2R:8131966-8132086 1.0000 120 chr2L:2236788-2236908 1.0000 120 chr3L:12203812-12203932 1.0000 120 chr2R:17086963-17087083 1.0000 120 chr2R:17694642-17694762 1.0000 120 chrX:13088645-13088765 1.0000 120 chr2R:21312438-21312558 1.0000 120 chr2R:11426851-11426971 1.0000 120 chr2L:20840627-20840747 1.0000 120 chr3L:18144772-18144892 1.0000 120 chr3L:17539036-17539156 1.0000 120 chr2L:6792151-6792271 1.0000 120 chr2L:9907343-9907463 1.0000 120 chr3R:23284387-23284507 1.0000 120 chr3L:4355196-4355316 1.0000 120 chr2L:1125483-1125603 1.0000 120 chr3L:17625114-17625234 1.0000 120 chr2L:7215836-7215956 1.0000 120 chr3L:19992085-19992205 1.0000 120 chr2R:21158383-21158503 1.0000 120 chrX:19261867-19261987 1.0000 120 chrX:6694551-6694671 1.0000 120 chrX:18082883-18083003 1.0000 120 chr2R:12441401-12441521 1.0000 120 chr2L:2861583-2861703 1.0000 120 chrX:4956019-4956139 1.0000 120 chr2R:7474748-7474868 1.0000 120 chr2R:22390379-22390499 1.0000 120 chr2R:11706323-11706443 1.0000 120 chr3L:11285814-11285934 1.0000 120 chr2R:22199997-22200117 1.0000 120 chr2L:6082961-6083081 1.0000 120 chr3R:22573691-22573811 1.0000 120 chr3R:20317746-20317866 1.0000 120 chr3L:9614660-9614780 1.0000 120 chr2L:19054336-19054456 1.0000 120 chr3R:4359786-4359906 1.0000 120 chr2R:9862002-9862122 1.0000 120 chr3L:8121706-8121826 1.0000 120 chr3L:20188384-20188504 1.0000 120 chr3L:5753049-5753169 1.0000 120 chrX:515848-515968 1.0000 120 chr2R:23964811-23964931 1.0000 120 chr3R:26185400-26185520 1.0000 120 chr3L:20406444-20406564 1.0000 120 chr2L:1218063-1218183 1.0000 120 chr3R:31220737-31220857 1.0000 120 chr2L:1094879-1094999 1.0000 120 chr2R:7451109-7451229 1.0000 120 chr2R:6686974-6687094 1.0000 120 chr3L:3417868-3417988 1.0000 120 chr3L:12804108-12804228 1.0000 120 chr2R:12670252-12670372 1.0000 120 chr3L:1502556-1502676 1.0000 120 chr2R:13990436-13990556 1.0000 120 chr3L:15689616-15689736 1.0000 120 chr3R:31722108-31722228 1.0000 120 chr2L:11736129-11736249 1.0000 120 chr3R:16626003-16626123 1.0000 120 chr3R:23947128-23947248 1.0000 120 chr3L:11292394-11292514 1.0000 120 chr2R:21702780-21702900 1.0000 120 chr3L:176052-176172 1.0000 120 chr3R:6182652-6182772 1.0000 120 chr2R:17686584-17686704 1.0000 120 chr2L:9908652-9908772 1.0000 120 chr2R:20252226-20252346 1.0000 120 chr3R:16338477-16338597 1.0000 120 chr3L:15548937-15549057 1.0000 120 chr3R:25329196-25329316 1.0000 120 chr3L:20516550-20516670 1.0000 120 chr2R:12644294-12644414 1.0000 120 chr3R:21561443-21561563 1.0000 120 chrX:16783983-16784103 1.0000 120 chr2R:6811153-6811273 1.0000 120 chr2R:25012039-25012159 1.0000 120 chr3L:6140298-6140418 1.0000 120 chr3L:17531540-17531660 1.0000 120 chr3R:17966173-17966293 1.0000 120 chr3R:10605058-10605178 1.0000 120 chr3L:311702-311822 1.0000 120 chr2R:14332305-14332425 1.0000 120 chrX:17159912-17160032 1.0000 120 chr3R:30919064-30919184 1.0000 120 chr3L:8978856-8978976 1.0000 120 chr3L:7868969-7869089 1.0000 120 chr2L:7525436-7525556 1.0000 120 chrX:17294295-17294415 1.0000 120 chr2L:20390156-20390276 1.0000 120 chr2L:19756855-19756975 1.0000 120 chr3R:14569612-14569732 1.0000 120 chr3R:29480092-29480212 1.0000 120 chr3R:26908946-26909066 1.0000 120 chr3R:11648928-11649048 1.0000 120 chr3R:28330922-28331042 1.0000 120 chr2L:2767793-2767913 1.0000 120 chr2R:23378297-23378417 1.0000 120 chrX:5917090-5917210 1.0000 120 chrX:16573797-16573917 1.0000 120 chr3L:3789282-3789402 1.0000 120 chr3L:15500920-15501040 1.0000 120 chr2R:7011470-7011590 1.0000 120 chr3L:19847109-19847229 1.0000 120 chr3R:15342909-15343029 1.0000 120 chrX:8409238-8409358 1.0000 120 chr2L:13190695-13190815 1.0000 120 chrX:12661681-12661801 1.0000 120 chr3L:1884859-1884979 1.0000 120 chr3L:12798911-12799031 1.0000 120 chr2R:9565113-9565233 1.0000 120 chr2R:9554210-9554330 1.0000 120 chr2L:20794035-20794155 1.0000 120 chr3L:4413961-4414081 1.0000 120 chr3R:14019452-14019572 1.0000 120 chr2R:17272590-17272710 1.0000 120 chr2R:15675903-15676023 1.0000 120 chr3L:17740562-17740682 1.0000 120 chr2L:3121913-3122033 1.0000 120 chr2R:21481067-21481187 1.0000 120 chr3R:30198940-30199060 1.0000 120 chr2L:3144903-3145023 1.0000 120 chr2R:5982022-5982142 1.0000 120 chr2R:15480293-15480413 1.0000 120 chr3R:24231264-24231384 1.0000 120 chr3L:17044967-17045087 1.0000 120 chr2L:8088259-8088379 1.0000 120 chr3L:17896030-17896150 1.0000 120 chr3L:10681942-10682062 1.0000 120 chr3R:25275524-25275644 1.0000 120 chr2R:22162272-22162392 1.0000 120 chr2L:3373313-3373433 1.0000 120 chr2R:20835891-20836011 1.0000 120 chr3L:11351390-11351510 1.0000 120 chr2R:24275716-24275836 1.0000 120 chr3L:21065364-21065484 1.0000 120 chr3L:8347487-8347607 1.0000 120 chr2L:1207598-1207718 1.0000 120 chr2R:13545494-13545614 1.0000 120 chr3L:3078925-3079045 1.0000 120 chr3R:22631278-22631398 1.0000 120 chr3R:10054400-10054520 1.0000 120 chr3L:8683952-8684072 1.0000 120 chr3R:24571827-24571947 1.0000 120 chr2L:7388173-7388293 1.0000 120 chr3R:15666130-15666250 1.0000 120 chr2R:24295279-24295399 1.0000 120 chr2R:22312711-22312831 1.0000 120 chr3R:21629853-21629973 1.0000 120 chr2R:24746012-24746132 1.0000 120 chr2L:19549553-19549673 1.0000 120 chr2R:21549085-21549205 1.0000 120 chr3R:17828838-17828958 1.0000 120 chr3L:9430374-9430494 1.0000 120 chr2R:21141905-21142025 1.0000 120 chr4:59065-59185 1.0000 120 chr2R:6236031-6236151 1.0000 120 chr2R:10618561-10618681 1.0000 120 chr3R:20832810-20832930 1.0000 120 chr3R:14479726-14479846 1.0000 120 chr3R:15935086-15935206 1.0000 120 chr3R:17078132-17078252 1.0000 120 chr2L:7434935-7435055 1.0000 120 chr3R:4975382-4975502 1.0000 120 chr2R:11712172-11712292 1.0000 120 chr2L:16315178-16315298 1.0000 120 chrX:13626057-13626177 1.0000 120 chr2R:8600421-8600541 1.0000 120 chr2L:20429085-20429205 1.0000 120 chr2L:7810636-7810756 1.0000 120 chr3R:20263834-20263954 1.0000 120 chr2L:2168327-2168447 1.0000 120 chrX:11350766-11350886 1.0000 120 chr2L:19935259-19935379 1.0000 120 chr2L:143258-143378 1.0000 120 chr3R:29074195-29074315 1.0000 120 chrX:10763262-10763382 1.0000 120 chr2L:12046714-12046834 1.0000 120 chr3R:19153603-19153723 1.0000 120 chr2R:23385749-23385869 1.0000 120 chr3L:7359975-7360095 1.0000 120 chr2R:11190894-11191014 1.0000 120 chr2R:18539967-18540087 1.0000 120 chr3L:11580045-11580165 1.0000 120 chr3L:11493588-11493708 1.0000 120 chrX:16333539-16333659 1.0000 120 chr2L:7811435-7811555 1.0000 120 chr2R:12174123-12174243 1.0000 120 chr3L:20954276-20954396 1.0000 120 chrX:6820908-6821028 1.0000 120 chr3R:10889344-10889464 1.0000 120 chr3R:17655168-17655288 1.0000 120 chr2R:13897596-13897716 1.0000 120 chr2L:8938128-8938248 1.0000 120 chr2R:17458312-17458432 1.0000 120 chr3L:8058479-8058599 1.0000 120 chr3R:15093054-15093174 1.0000 120 chr2R:22669239-22669359 1.0000 120 chr3L:18994641-18994761 1.0000 120 chr3L:11049588-11049708 1.0000 120 chr3L:6218681-6218801 1.0000 120 chr2R:18397647-18397767 1.0000 120 chr3L:11540382-11540502 1.0000 120 chr3R:31608898-31609018 1.0000 120 chr3R:29068942-29069062 1.0000 120 chr3R:29891331-29891451 1.0000 120 chr3L:3038164-3038284 1.0000 120 chrX:6220107-6220227 1.0000 120 chr3R:22464718-22464838 1.0000 120 chr3L:17791642-17791762 1.0000 120 chr2L:10249771-10249891 1.0000 120 chr3L:4614075-4614195 1.0000 120 chr3L:17475167-17475287 1.0000 120 chr3R:5564894-5565014 1.0000 120 chr3R:16441591-16441711 1.0000 120 chr2L:7519041-7519161 1.0000 120 chr3R:27289839-27289959 1.0000 120 chrX:4609882-4610002 1.0000 120 chr3R:18585668-18585788 1.0000 120 chr2R:17586063-17586183 1.0000 120 chr2L:9179359-9179479 1.0000 120 chr2L:2376290-2376410 1.0000 120 chr2L:9570912-9571032 1.0000 120 chr2L:8694370-8694490 1.0000 120 chr3L:9762184-9762304 1.0000 120 chr2R:22657071-22657191 1.0000 120 chr3L:4221346-4221466 1.0000 120 chr3L:18398392-18398512 1.0000 120 chr3R:10888607-10888727 1.0000 120 chr3R:10598358-10598478 1.0000 120 chr2L:7702781-7702901 1.0000 120 chr2R:13171354-13171474 1.0000 120 chr2R:7457701-7457821 1.0000 120 chr2R:8242630-8242750 1.0000 120 chr3L:629596-629716 1.0000 120 chr3R:23725881-23726001 1.0000 120 chr3L:6216118-6216238 1.0000 120 chr2R:21659964-21660084 1.0000 120 chr3L:17047819-17047939 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CrebB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CrebB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.22 G 0.222 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.22 G 0.222 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCAMACAM MEME-1 width = 8 sites = 75 llr = 564 E-value = 1.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 53a6a:a5 pos.-specific C :6:4:a:4 probability G 5::::::: matrix T :2:::::1 bits 2.2 * 2.0 * 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ***** (10.9 bits) 0.9 * ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAAACAA consensus GA C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13171354-13171474 74 8.18e-05 CGGTCAACAG GCAAACAA ATCAGCAGCG chr3R:5564894-5565014 104 8.18e-05 TACTGCCGCA ACAAACAC GGTCATGCC chr3R:15093054-15093174 75 8.18e-05 ATATGTAATA ACAAACAA ACGGCGAGTG chr2R:17458312-17458432 103 8.18e-05 CACGTACCGT ACAAACAA ACAGACGTGC chr4:59065-59185 88 8.18e-05 GCTTACACAT ACAAACAA ATCTGTATGT chr2R:24746012-24746132 110 8.18e-05 GCTATAATAA acaaacaa gca chr2L:7388173-7388293 31 8.18e-05 AAAATAAAAA ACAAACAA CACAAGCTGG chr2R:24275716-24275836 22 8.18e-05 AACTGGCCTC ACAAACAA ACGCCACTTA chr3R:30198940-30199060 38 8.18e-05 TAATGCCAAA GCAAACAA CCAAAGGCTA chr3R:11648928-11649048 17 8.18e-05 GTTGCAATAC ACAAACAA ACGGGATACA chr3R:26908946-26909066 93 8.18e-05 AAGATCTATG GCAAACAA AGATGTTTAA chr2L:20390156-20390276 70 8.18e-05 aaacagacaa acaaacaa acaaacCCTC chr3L:15548937-15549057 50 8.18e-05 AATATGAAAT GCAAACAC AAGTGCAACT chr3R:16338477-16338597 1 8.18e-05 . ACAAACAC AGAGCAGTTC chr3L:15689616-15689736 63 8.18e-05 AGAGCGACAA GCAAACAA TTGCCATTTA chrX:515848-515968 79 8.18e-05 TGTGTacaaa gcaaacaa agaaatcaaa chr3R:23284387-23284507 35 8.18e-05 CTTTGGATAT GCAAACAA ACTACTGATA chr2R:17694642-17694762 76 8.18e-05 TGTAGGAAGT ACAAACAA TGATAGGACA chrX:12667138-12667258 51 8.18e-05 GTTGACAATA ACAAACAA GTTTATTTAT chr3L:629596-629716 82 1.45e-04 AACTAAACTG GCACACAC GCACACCAAC chr2L:8694370-8694490 81 1.45e-04 GACGCTGATA GCACACAC GGCGTATGAT chr2L:9179359-9179479 43 1.45e-04 GAGTCGCGAA ACACACAC GAGCAGTGAC chr3L:4614075-4614195 17 1.45e-04 CGAGGGTCGT GCACACAC TTCTCATGTT chr2R:13897596-13897716 56 1.45e-04 CAGCAAGTCG GCACACAC AGCGGATACG chrX:16333539-16333659 6 1.45e-04 CTCCC GCACACAC GCACACCAGC chr3R:20832810-20832930 19 1.45e-04 GCGATTCCAG ACACACAC TCGAGTTGTA chr3L:3078925-3079045 71 1.45e-04 GTACATATTT ACACACAA TTTACATTTC chr3L:8347487-8347607 76 1.45e-04 CGCCAGCTGT GCACACAA CGTCGCGGTC chr2R:22162272-22162392 105 1.45e-04 TATTATATAA GCACACAC ATCATACT chr2R:5982022-5982142 101 1.45e-04 tcacgcacgc acacacac aggcacACGT chr3R:16626003-16626123 16 1.45e-04 ccgcaaaaca gcacacac agccacactc chr2R:13990436-13990556 26 1.45e-04 cgtaacacac acacacac agacGCTCCG chr2L:1125483-1125603 97 1.45e-04 GTGTAAACAT ACACACAA CCGGTGCCGG chrX:13088645-13088765 51 1.45e-04 ATGTATGTac acacacac acgcgcacat chr2L:6462279-6462399 5 1.45e-04 ATAT GCACACAC AACATTTTTA chr2L:5547546-5547666 38 1.45e-04 ACAAGCGAGT ACACACAC GAAAAACACA chrX:4609882-4610002 110 2.51e-04 TTGTCGCTGG GAAAACAA CAC chrX:11350766-11350886 42 2.51e-04 CGAGAAAAGC AAAAACAC ACAGGGTCGC chr3R:20263834-20263954 106 2.51e-04 CGCGTAAAAG AAAAACAA GCACTCA chr2R:21141905-21142025 50 2.51e-04 ACGGAATATC GAAAACAA ATGAAAACTG chr2R:20835891-20836011 56 2.51e-04 CGAACGATAC GAAAACAA TGATCGAACA chr2R:15675903-15676023 41 2.51e-04 TTCAAGTCTG AAAAACAA CTGATCGCCG chr3R:14019452-14019572 25 2.51e-04 TTCCACCCAC AAAAACAC TCACACCTCT chr2R:9565113-9565233 39 2.51e-04 CACAGATACA AAAAACAC GTGACTGTGT chr3L:19847109-19847229 60 2.51e-04 TGTCTGCCAT AAAAACAA AGCAAATTTA chr3R:17966173-17966293 90 2.51e-04 ACATCTACGA AAAAACAA TAGCTCACAC chr3L:6140298-6140418 36 2.51e-04 CCCCCCAACA AAAAACAA ATATTTGGTC chr3R:25329196-25329316 76 2.51e-04 AAATCGAGCA GAAAACAC ATATACGTCC chr3R:6182652-6182772 13 2.51e-04 AAATAAAAAT GAAAACAA AAGCGTGTGA chr3L:12804108-12804228 105 2.51e-04 GCATCAAAAC GAAAACAA TAACAACG chr2R:6686974-6687094 70 2.51e-04 ACTCCAATCC AAAAACAA TTCAATTGTC chr2R:17714497-17714617 62 2.51e-04 CATATATATG AAAAACAA ATTCAAACGT chr3R:16441591-16441711 63 3.33e-04 TCTTCACGGG GAACACAA GTGTCACAGT chr3R:31608898-31609018 104 3.33e-04 ACAGCCCCTC AAACACAC ATACCACTG chr2L:7810636-7810756 110 3.33e-04 AGGGCTTGAG AAACACAC GAA chr2L:6082961-6083081 107 3.33e-04 AGCAGATAAT AAacacac agaaac chr2R:22669239-22669359 8 4.34e-04 AAGTTCG ATAAACAA TGAAGATCAT chr3R:14479726-14479846 102 4.34e-04 TATGTGGAGT ATAAACAA CAAAGGCAGA chr2R:13545494-13545614 38 4.34e-04 CCGAGCGATT GTAAACAA TGAACGGCCA chr2R:9554210-9554330 105 4.34e-04 CGAAACTTAC GTAAACAC GCATGTCT chr3R:29480092-29480212 59 4.34e-04 GACAGCCAAA GTAAACAA AGCCGCATCG chr2L:1218063-1218183 34 4.34e-04 AGTAATGTTT GTAAACAC TTATCAAGAG chr2R:12441401-12441521 7 4.34e-04 TTGTTT GTAAACAC CGATCGTGGC chr2R:8131966-8132086 44 4.34e-04 TGTAGCAGAC GTAAACAA ACCCAAATCC chr2R:15480293-15480413 27 4.78e-04 AAACCAGTTT GCAAACAT GTACATGGCT chr3R:20317746-20317866 55 4.78e-04 TTTTTGCTTG GCAAACAT TGACTATATT chr3R:11688312-11688432 100 4.78e-04 TGAATTACTT ACAAACAT AATATCAACA chr2L:10249771-10249891 81 5.57e-04 AAATATGTAC ATACACAC GATTTGTATG chr3R:29891331-29891451 57 5.57e-04 TTTGCCAAAG ATACACAA GTCTGGTTTT chrX:17294295-17294415 3 5.57e-04 gc atacacaa ataaacagca chr3L:19992085-19992205 16 5.57e-04 ATCGAGCTAC ATACACAC TTTAGCCCAT chr3R:17078132-17078252 85 5.91e-04 GTGTGTGTGT GCACACAT GTGCCTGAGT chr3L:12798911-12799031 111 5.91e-04 ACAAGGAAGC GCACACAT CA chr3L:11292394-11292514 29 5.91e-04 GGCTGatgca acacacat gtgtatgcat chr2R:21312438-21312558 113 5.91e-04 TTTAAAATAT GCACACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13171354-13171474 8.2e-05 73_[+1]_39 chr3R:5564894-5565014 8.2e-05 103_[+1]_9 chr3R:15093054-15093174 8.2e-05 74_[+1]_38 chr2R:17458312-17458432 8.2e-05 102_[+1]_10 chr4:59065-59185 8.2e-05 87_[+1]_25 chr2R:24746012-24746132 8.2e-05 109_[+1]_3 chr2L:7388173-7388293 8.2e-05 30_[+1]_82 chr2R:24275716-24275836 8.2e-05 21_[+1]_91 chr3R:30198940-30199060 8.2e-05 37_[+1]_75 chr3R:11648928-11649048 8.2e-05 16_[+1]_96 chr3R:26908946-26909066 8.2e-05 92_[+1]_20 chr2L:20390156-20390276 8.2e-05 69_[+1]_43 chr3L:15548937-15549057 8.2e-05 49_[+1]_63 chr3R:16338477-16338597 8.2e-05 [+1]_112 chr3L:15689616-15689736 8.2e-05 62_[+1]_50 chrX:515848-515968 8.2e-05 78_[+1]_34 chr3R:23284387-23284507 8.2e-05 34_[+1]_78 chr2R:17694642-17694762 8.2e-05 75_[+1]_37 chrX:12667138-12667258 8.2e-05 50_[+1]_62 chr3L:629596-629716 0.00014 81_[+1]_31 chr2L:8694370-8694490 0.00014 80_[+1]_32 chr2L:9179359-9179479 0.00014 42_[+1]_70 chr3L:4614075-4614195 0.00014 16_[+1]_96 chr2R:13897596-13897716 0.00014 55_[+1]_57 chrX:16333539-16333659 0.00014 5_[+1]_107 chr3R:20832810-20832930 0.00014 18_[+1]_94 chr3L:3078925-3079045 0.00014 70_[+1]_42 chr3L:8347487-8347607 0.00014 75_[+1]_37 chr2R:22162272-22162392 0.00014 104_[+1]_8 chr2R:5982022-5982142 0.00014 100_[+1]_12 chr3R:16626003-16626123 0.00014 15_[+1]_97 chr2R:13990436-13990556 0.00014 25_[+1]_87 chr2L:1125483-1125603 0.00014 96_[+1]_16 chrX:13088645-13088765 0.00014 50_[+1]_62 chr2L:6462279-6462399 0.00014 4_[+1]_108 chr2L:5547546-5547666 0.00014 37_[+1]_75 chrX:4609882-4610002 0.00025 109_[+1]_3 chrX:11350766-11350886 0.00025 41_[+1]_71 chr3R:20263834-20263954 0.00025 105_[+1]_7 chr2R:21141905-21142025 0.00025 49_[+1]_63 chr2R:20835891-20836011 0.00025 55_[+1]_57 chr2R:15675903-15676023 0.00025 40_[+1]_72 chr3R:14019452-14019572 0.00025 24_[+1]_88 chr2R:9565113-9565233 0.00025 38_[+1]_74 chr3L:19847109-19847229 0.00025 59_[+1]_53 chr3R:17966173-17966293 0.00025 89_[+1]_23 chr3L:6140298-6140418 0.00025 35_[+1]_77 chr3R:25329196-25329316 0.00025 75_[+1]_37 chr3R:6182652-6182772 0.00025 12_[+1]_100 chr3L:12804108-12804228 0.00025 104_[+1]_8 chr2R:6686974-6687094 0.00025 69_[+1]_43 chr2R:17714497-17714617 0.00025 61_[+1]_51 chr3R:16441591-16441711 0.00033 62_[+1]_50 chr3R:31608898-31609018 0.00033 103_[+1]_9 chr2L:7810636-7810756 0.00033 109_[+1]_3 chr2L:6082961-6083081 0.00033 106_[+1]_6 chr2R:22669239-22669359 0.00043 7_[+1]_105 chr3R:14479726-14479846 0.00043 101_[+1]_11 chr2R:13545494-13545614 0.00043 37_[+1]_75 chr2R:9554210-9554330 0.00043 104_[+1]_8 chr3R:29480092-29480212 0.00043 58_[+1]_54 chr2L:1218063-1218183 0.00043 33_[+1]_79 chr2R:12441401-12441521 0.00043 6_[+1]_106 chr2R:8131966-8132086 0.00043 43_[+1]_69 chr2R:15480293-15480413 0.00048 26_[+1]_86 chr3R:20317746-20317866 0.00048 54_[+1]_58 chr3R:11688312-11688432 0.00048 99_[+1]_13 chr2L:10249771-10249891 0.00056 80_[+1]_32 chr3R:29891331-29891451 0.00056 56_[+1]_56 chrX:17294295-17294415 0.00056 2_[+1]_110 chr3L:19992085-19992205 0.00056 15_[+1]_97 chr3R:17078132-17078252 0.00059 84_[+1]_28 chr3L:12798911-12799031 0.00059 110_[+1]_2 chr3L:11292394-11292514 0.00059 28_[+1]_84 chr2R:21312438-21312558 0.00059 112_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAMACAM width=8 seqs=75 chr2R:13171354-13171474 ( 74) GCAAACAA 1 chr3R:5564894-5565014 ( 104) ACAAACAC 1 chr3R:15093054-15093174 ( 75) ACAAACAA 1 chr2R:17458312-17458432 ( 103) ACAAACAA 1 chr4:59065-59185 ( 88) ACAAACAA 1 chr2R:24746012-24746132 ( 110) ACAAACAA 1 chr2L:7388173-7388293 ( 31) ACAAACAA 1 chr2R:24275716-24275836 ( 22) ACAAACAA 1 chr3R:30198940-30199060 ( 38) GCAAACAA 1 chr3R:11648928-11649048 ( 17) ACAAACAA 1 chr3R:26908946-26909066 ( 93) GCAAACAA 1 chr2L:20390156-20390276 ( 70) ACAAACAA 1 chr3L:15548937-15549057 ( 50) GCAAACAC 1 chr3R:16338477-16338597 ( 1) ACAAACAC 1 chr3L:15689616-15689736 ( 63) GCAAACAA 1 chrX:515848-515968 ( 79) GCAAACAA 1 chr3R:23284387-23284507 ( 35) GCAAACAA 1 chr2R:17694642-17694762 ( 76) ACAAACAA 1 chrX:12667138-12667258 ( 51) ACAAACAA 1 chr3L:629596-629716 ( 82) GCACACAC 1 chr2L:8694370-8694490 ( 81) GCACACAC 1 chr2L:9179359-9179479 ( 43) ACACACAC 1 chr3L:4614075-4614195 ( 17) GCACACAC 1 chr2R:13897596-13897716 ( 56) GCACACAC 1 chrX:16333539-16333659 ( 6) GCACACAC 1 chr3R:20832810-20832930 ( 19) ACACACAC 1 chr3L:3078925-3079045 ( 71) ACACACAA 1 chr3L:8347487-8347607 ( 76) GCACACAA 1 chr2R:22162272-22162392 ( 105) GCACACAC 1 chr2R:5982022-5982142 ( 101) ACACACAC 1 chr3R:16626003-16626123 ( 16) GCACACAC 1 chr2R:13990436-13990556 ( 26) ACACACAC 1 chr2L:1125483-1125603 ( 97) ACACACAA 1 chrX:13088645-13088765 ( 51) ACACACAC 1 chr2L:6462279-6462399 ( 5) GCACACAC 1 chr2L:5547546-5547666 ( 38) ACACACAC 1 chrX:4609882-4610002 ( 110) GAAAACAA 1 chrX:11350766-11350886 ( 42) AAAAACAC 1 chr3R:20263834-20263954 ( 106) AAAAACAA 1 chr2R:21141905-21142025 ( 50) GAAAACAA 1 chr2R:20835891-20836011 ( 56) GAAAACAA 1 chr2R:15675903-15676023 ( 41) AAAAACAA 1 chr3R:14019452-14019572 ( 25) AAAAACAC 1 chr2R:9565113-9565233 ( 39) AAAAACAC 1 chr3L:19847109-19847229 ( 60) AAAAACAA 1 chr3R:17966173-17966293 ( 90) AAAAACAA 1 chr3L:6140298-6140418 ( 36) AAAAACAA 1 chr3R:25329196-25329316 ( 76) GAAAACAC 1 chr3R:6182652-6182772 ( 13) GAAAACAA 1 chr3L:12804108-12804228 ( 105) GAAAACAA 1 chr2R:6686974-6687094 ( 70) AAAAACAA 1 chr2R:17714497-17714617 ( 62) AAAAACAA 1 chr3R:16441591-16441711 ( 63) GAACACAA 1 chr3R:31608898-31609018 ( 104) AAACACAC 1 chr2L:7810636-7810756 ( 110) AAACACAC 1 chr2L:6082961-6083081 ( 107) AAACACAC 1 chr2R:22669239-22669359 ( 8) ATAAACAA 1 chr3R:14479726-14479846 ( 102) ATAAACAA 1 chr2R:13545494-13545614 ( 38) GTAAACAA 1 chr2R:9554210-9554330 ( 105) GTAAACAC 1 chr3R:29480092-29480212 ( 59) GTAAACAA 1 chr2L:1218063-1218183 ( 34) GTAAACAC 1 chr2R:12441401-12441521 ( 7) GTAAACAC 1 chr2R:8131966-8132086 ( 44) GTAAACAA 1 chr2R:15480293-15480413 ( 27) GCAAACAT 1 chr3R:20317746-20317866 ( 55) GCAAACAT 1 chr3R:11688312-11688432 ( 100) ACAAACAT 1 chr2L:10249771-10249891 ( 81) ATACACAC 1 chr3R:29891331-29891451 ( 57) ATACACAA 1 chrX:17294295-17294415 ( 3) ATACACAA 1 chr3L:19992085-19992205 ( 16) ATACACAC 1 chr3R:17078132-17078252 ( 85) GCACACAT 1 chr3L:12798911-12799031 ( 111) GCACACAT 1 chr3L:11292394-11292514 ( 29) ACACACAT 1 chr2R:21312438-21312558 ( 113) GCACACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.98753 E= 1.5e-005 94 -1287 103 -1287 -10 138 -1287 -77 181 -1287 -1287 -1287 110 82 -1287 -1287 181 -1287 -1287 -1287 -1287 219 -1287 -1287 181 -1287 -1287 -1287 87 82 -1287 -155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 1.5e-005 0.546667 0.000000 0.453333 0.000000 0.266667 0.573333 0.000000 0.160000 1.000000 0.000000 0.000000 0.000000 0.613333 0.386667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.520000 0.386667 0.000000 0.093333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMACAM MEME-1 regular expression -------------------------------------------------------------------------------- [AG][CA]A[AC]ACA[AC] -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTRYN MEME-2 width = 8 sites = 72 llr = 549 E-value = 2.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::5:2 pos.-specific C ::::::62 probability G :a:3:5:2 matrix T a:a7a:43 bits 2.2 * 2.0 *** * 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 ******* (11.0 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TGTTTGCT consensus G ATA sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29891331-29891451 45 4.31e-05 GTAATTTCTG TGTTTGCC AAAGATACAC chr3L:20954276-20954396 72 4.31e-05 CCCGAAGATT TGTTTGCT TTACTTTTCT chr3R:29074195-29074315 34 4.31e-05 TCTGTCATTG TGTTTGCT TAGGTAACGC chr4:59065-59185 103 4.31e-05 CAAATCTGTA TGTTTGCT TAACGTACAT chr3R:24571827-24571947 48 4.31e-05 TGATTAGCTT TGTTTGCT TTTTCAGCTA chr2L:8088259-8088379 92 4.31e-05 CGCTCTGTTC TGTTTGCC TCGTTTTGGC chr2R:7011470-7011590 43 4.31e-05 CATTTTTCAT TGTTTGCC AGATAAGATA chrX:16573797-16573917 22 4.31e-05 CATGTTTATG TGTTTGCT TTGCGGTGTC chr3R:30919064-30919184 49 4.31e-05 GTCCTTAGCT TGTTTGCC AAGTTGTTAC chr3L:6140298-6140418 62 4.31e-05 TCAATGCGCG TGTTTGCC TACAAGTAGA chr3L:15548937-15549057 109 4.31e-05 AGTGATCCGG TGTTTGCT TAGT chr3R:16338477-16338597 94 4.31e-05 TTATATAGTT TGTTTGCC AGTGTGGCCG chr3R:23947128-23947248 68 4.31e-05 GCACATCATC TGTTTGCG TTGGTAAATA chr2L:6462279-6462399 72 4.31e-05 ACAAACGCAT TGTTTGCC CAGATGAATG chr3R:22573691-22573811 63 6.02e-05 CTCAGCCGTT TGTTTGCA ATTGGAATTG chr2L:2861583-2861703 22 6.02e-05 CAACATTATG TGTTTGCA CTCTCGGTAC chr2L:7215836-7215956 66 6.02e-05 TAGAAATGAC TGTTTGCA TGTGCCGAGC chr3L:6216118-6216238 103 1.16e-04 TTCAGAGATT TGTTTACT TTTCTGTGTT chr3L:9762184-9762304 31 1.16e-04 GTTTTCTCAT TGTTTACC TATTTCCGCT chr2L:143258-143378 100 1.16e-04 ATTTGTTGTG TGTTTACT TGTCGAAGAT chr2L:2168327-2168447 54 1.16e-04 TATTATGAAA TGTTTACG ATTTGCTTGA chr3L:20516550-20516670 17 1.16e-04 TAGTTTCACT TGTTTACT CAGAAAGGCG chr3R:6182652-6182772 48 1.16e-04 TGGGCTTTAG TGTTTACC CGGTTCTTAT chr3L:12804108-12804228 17 1.16e-04 GCTTTCTGCG TGTTTACC TTTGACAATG chr2R:17086963-17087083 86 1.16e-04 TTACCTCGTA TGTTTACC TTATCGATAC chr2L:13801311-13801431 29 1.16e-04 TCCTTCGTCG TGTTTACT ATTTGTAGTT chr2R:22657071-22657191 71 1.69e-04 GTTGTTCATC TGTTTGTC AAGCCCCCGT chr2L:8938128-8938248 41 1.69e-04 AGGTTATAAA TGTTTGTT TAACTTTGTT chr3R:19153603-19153723 13 1.69e-04 AAATTGTAAA TGTTTGTT ATATTTCTCC chr3R:17828838-17828958 12 1.69e-04 CTAGGTGGAA TGTTTGTG TTTGTATTTG chr3L:10681942-10682062 105 1.69e-04 tcttcgcttt tgtttgtg ttgttgtt chr3L:19847109-19847229 46 1.69e-04 TTTAAACGAC TGTTTGTC TGCCATAAAA chr3R:26908946-26909066 13 1.69e-04 AGTCAAACAC TGTTTGTT GACGTTACCT chr2L:19756855-19756975 43 1.69e-04 AACAACAAAC TGTTTGTG GAGCGCACTT chr2R:6811153-6811273 73 1.69e-04 GCGGAGTTTT TGTTTGTG TGCGTGCGTG chr3R:31220737-31220857 18 1.69e-04 TCGACGTCGG TGTTTGTG TCTACGTCAC chr2L:6792151-6792271 74 1.69e-04 tgtgtgtgtg tgtttgtT AAGAGATCGC chr2R:8242630-8242750 37 1.91e-04 AATATTCTCT TGTTTACA ATGCAAATAA chr3L:6218681-6218801 84 1.91e-04 TCTGAACGTA TGTTTACA AAATCTTTTC chr3L:11049588-11049708 52 1.91e-04 TCAACCGCCT TGTTTACA CCCATCTAAT chr2R:7451109-7451229 64 1.91e-04 CCAACACTCG TGTTTACA CGCGGCTAAT chr2L:1218063-1218183 100 2.12e-04 TATTTTCTAC TGTTTGTA TTTGATGAGT chr2L:2376290-2376410 18 2.47e-04 TGGCTGCGCA TGTGTGCG GCAGTGCGAG chr2L:16315178-16315298 47 2.47e-04 GGCGAGTATC TGTGTGCG CGATCACAAG chr2R:22312711-22312831 15 2.47e-04 TGAGTACTCA TGTGTGCG CCATGTATGC chrX:8409238-8409358 71 2.47e-04 AGACGTATCG TGTGTGCT CAGACTTGTG chr3L:17047819-17047939 55 3.16e-04 TTTGTTTTCG TGTTTATG GAATATTTAT chr3L:4614075-4614195 31 3.16e-04 ACACTTCTCA TGTTTATT TTAGATCGGG chr2R:18397647-18397767 13 3.16e-04 TTTGCCTGAT TGTTTATT AATGTCCGGG chr2R:15480293-15480413 60 3.16e-04 TACATATGAA TGTTTATG ACTGGATAAA chr2L:3121913-3122033 57 3.16e-04 CTCTTGGCTT TGTTTATC TACAAGTTAC chr3L:3789282-3789402 91 3.16e-04 CAATATTTAC TGTTTATC GCATGCGAGA chr2R:12441401-12441521 84 3.16e-04 ATCTAAATAT TGTTTATT TACAATATAT chr3L:17625114-17625234 96 3.16e-04 TCTAGCTTTT TGTTTATG TACAAATTCT chrX:12667138-12667258 73 3.16e-04 ATTTATTGGT TGTTTATT AAAGTGTTTT chr2R:22669239-22669359 26 3.30e-04 TGAAGATCAT TGTGTGCA CTAGATAAAG chr3L:176052-176172 1 3.30e-04 . TGTGTGCA CCCTGTGCTC chr3L:15500920-15501040 88 3.57e-04 TTCGTTCATT TGTTTATA CTCGCGCGGC chr3L:18833395-18833515 66 3.57e-04 GTTGTTATTT TGTTTATA CACATATTGT chr3R:10605058-10605178 55 4.02e-04 TTATCACGTT TGTGTACT TCGGGTATTG chr3L:11540382-11540502 40 4.46e-04 TGCATACTCA TGTGTGTC AATATTTGGT chrX:11350766-11350886 70 4.46e-04 TGTGCATGTG TGTGTGTG GTACAGTTGG chr3R:17078132-17078252 76 4.46e-04 CTTACATATG TGTGTGTG TGCACACATG chr2R:14332305-14332425 5 4.46e-04 AAAA TGTGTGTT TAAGGTCTTT chrX:13626057-13626177 50 4.64e-04 TATGTACATT TGTGTACA TAAGATAAGG chr3L:3078925-3079045 58 4.64e-04 CTTAATTTCG TGTGTACA TATTTACACA chr3R:28330922-28331042 113 4.64e-04 CAGCTGTATA TGTGTACA chr3L:11292394-11292514 87 4.64e-04 GGTTTGGCGG TGTGTACA GCAGAAGCGG chrX:515848-515968 69 4.64e-04 AAATTCGATT TGTGTaca aagcaaacaa chr2L:10249771-10249891 46 5.37e-04 ATAGCGTTCA TGTGTATG CATGCCGTTG chr3R:20263834-20263954 73 5.37e-04 CAAAGTTTGT TGTGTATC TATAGTAAAC chr2R:9862002-9862122 65 5.37e-04 GGTGTGTATA TGTGTATG GCGTATATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29891331-29891451 4.3e-05 44_[+2]_68 chr3L:20954276-20954396 4.3e-05 71_[+2]_41 chr3R:29074195-29074315 4.3e-05 33_[+2]_79 chr4:59065-59185 4.3e-05 102_[+2]_10 chr3R:24571827-24571947 4.3e-05 47_[+2]_65 chr2L:8088259-8088379 4.3e-05 91_[+2]_21 chr2R:7011470-7011590 4.3e-05 42_[+2]_70 chrX:16573797-16573917 4.3e-05 21_[+2]_91 chr3R:30919064-30919184 4.3e-05 48_[+2]_64 chr3L:6140298-6140418 4.3e-05 61_[+2]_51 chr3L:15548937-15549057 4.3e-05 108_[+2]_4 chr3R:16338477-16338597 4.3e-05 93_[+2]_19 chr3R:23947128-23947248 4.3e-05 67_[+2]_45 chr2L:6462279-6462399 4.3e-05 71_[+2]_41 chr3R:22573691-22573811 6e-05 62_[+2]_50 chr2L:2861583-2861703 6e-05 21_[+2]_91 chr2L:7215836-7215956 6e-05 65_[+2]_47 chr3L:6216118-6216238 0.00012 102_[+2]_10 chr3L:9762184-9762304 0.00012 30_[+2]_82 chr2L:143258-143378 0.00012 99_[+2]_13 chr2L:2168327-2168447 0.00012 53_[+2]_59 chr3L:20516550-20516670 0.00012 16_[+2]_96 chr3R:6182652-6182772 0.00012 47_[+2]_65 chr3L:12804108-12804228 0.00012 16_[+2]_96 chr2R:17086963-17087083 0.00012 85_[+2]_27 chr2L:13801311-13801431 0.00012 28_[+2]_84 chr2R:22657071-22657191 0.00017 70_[+2]_42 chr2L:8938128-8938248 0.00017 40_[+2]_72 chr3R:19153603-19153723 0.00017 12_[+2]_100 chr3R:17828838-17828958 0.00017 11_[+2]_101 chr3L:10681942-10682062 0.00017 104_[+2]_8 chr3L:19847109-19847229 0.00017 45_[+2]_67 chr3R:26908946-26909066 0.00017 12_[+2]_100 chr2L:19756855-19756975 0.00017 42_[+2]_70 chr2R:6811153-6811273 0.00017 72_[+2]_40 chr3R:31220737-31220857 0.00017 17_[+2]_95 chr2L:6792151-6792271 0.00017 73_[+2]_39 chr2R:8242630-8242750 0.00019 36_[+2]_76 chr3L:6218681-6218801 0.00019 83_[+2]_29 chr3L:11049588-11049708 0.00019 51_[+2]_61 chr2R:7451109-7451229 0.00019 63_[+2]_49 chr2L:1218063-1218183 0.00021 99_[+2]_13 chr2L:2376290-2376410 0.00025 17_[+2]_95 chr2L:16315178-16315298 0.00025 46_[+2]_66 chr2R:22312711-22312831 0.00025 14_[+2]_98 chrX:8409238-8409358 0.00025 70_[+2]_42 chr3L:17047819-17047939 0.00032 54_[+2]_58 chr3L:4614075-4614195 0.00032 30_[+2]_82 chr2R:18397647-18397767 0.00032 12_[+2]_100 chr2R:15480293-15480413 0.00032 59_[+2]_53 chr2L:3121913-3122033 0.00032 56_[+2]_56 chr3L:3789282-3789402 0.00032 90_[+2]_22 chr2R:12441401-12441521 0.00032 83_[+2]_29 chr3L:17625114-17625234 0.00032 95_[+2]_17 chrX:12667138-12667258 0.00032 72_[+2]_40 chr2R:22669239-22669359 0.00033 25_[+2]_87 chr3L:176052-176172 0.00033 [+2]_112 chr3L:15500920-15501040 0.00036 87_[+2]_25 chr3L:18833395-18833515 0.00036 65_[+2]_47 chr3R:10605058-10605178 0.0004 54_[+2]_58 chr3L:11540382-11540502 0.00045 39_[+2]_73 chrX:11350766-11350886 0.00045 69_[+2]_43 chr3R:17078132-17078252 0.00045 75_[+2]_37 chr2R:14332305-14332425 0.00045 4_[+2]_108 chrX:13626057-13626177 0.00046 49_[+2]_63 chr3L:3078925-3079045 0.00046 57_[+2]_55 chr3R:28330922-28331042 0.00046 112_[+2] chr3L:11292394-11292514 0.00046 86_[+2]_26 chrX:515848-515968 0.00046 68_[+2]_44 chr2L:10249771-10249891 0.00054 45_[+2]_67 chr3R:20263834-20263954 0.00054 72_[+2]_40 chr2R:9862002-9862122 0.00054 64_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTRYN width=8 seqs=72 chr3R:29891331-29891451 ( 45) TGTTTGCC 1 chr3L:20954276-20954396 ( 72) TGTTTGCT 1 chr3R:29074195-29074315 ( 34) TGTTTGCT 1 chr4:59065-59185 ( 103) TGTTTGCT 1 chr3R:24571827-24571947 ( 48) TGTTTGCT 1 chr2L:8088259-8088379 ( 92) TGTTTGCC 1 chr2R:7011470-7011590 ( 43) TGTTTGCC 1 chrX:16573797-16573917 ( 22) TGTTTGCT 1 chr3R:30919064-30919184 ( 49) TGTTTGCC 1 chr3L:6140298-6140418 ( 62) TGTTTGCC 1 chr3L:15548937-15549057 ( 109) TGTTTGCT 1 chr3R:16338477-16338597 ( 94) TGTTTGCC 1 chr3R:23947128-23947248 ( 68) TGTTTGCG 1 chr2L:6462279-6462399 ( 72) TGTTTGCC 1 chr3R:22573691-22573811 ( 63) TGTTTGCA 1 chr2L:2861583-2861703 ( 22) TGTTTGCA 1 chr2L:7215836-7215956 ( 66) TGTTTGCA 1 chr3L:6216118-6216238 ( 103) TGTTTACT 1 chr3L:9762184-9762304 ( 31) TGTTTACC 1 chr2L:143258-143378 ( 100) TGTTTACT 1 chr2L:2168327-2168447 ( 54) TGTTTACG 1 chr3L:20516550-20516670 ( 17) TGTTTACT 1 chr3R:6182652-6182772 ( 48) TGTTTACC 1 chr3L:12804108-12804228 ( 17) TGTTTACC 1 chr2R:17086963-17087083 ( 86) TGTTTACC 1 chr2L:13801311-13801431 ( 29) TGTTTACT 1 chr2R:22657071-22657191 ( 71) TGTTTGTC 1 chr2L:8938128-8938248 ( 41) TGTTTGTT 1 chr3R:19153603-19153723 ( 13) TGTTTGTT 1 chr3R:17828838-17828958 ( 12) TGTTTGTG 1 chr3L:10681942-10682062 ( 105) TGTTTGTG 1 chr3L:19847109-19847229 ( 46) TGTTTGTC 1 chr3R:26908946-26909066 ( 13) TGTTTGTT 1 chr2L:19756855-19756975 ( 43) TGTTTGTG 1 chr2R:6811153-6811273 ( 73) TGTTTGTG 1 chr3R:31220737-31220857 ( 18) TGTTTGTG 1 chr2L:6792151-6792271 ( 74) TGTTTGTT 1 chr2R:8242630-8242750 ( 37) TGTTTACA 1 chr3L:6218681-6218801 ( 84) TGTTTACA 1 chr3L:11049588-11049708 ( 52) TGTTTACA 1 chr2R:7451109-7451229 ( 64) TGTTTACA 1 chr2L:1218063-1218183 ( 100) TGTTTGTA 1 chr2L:2376290-2376410 ( 18) TGTGTGCG 1 chr2L:16315178-16315298 ( 47) TGTGTGCG 1 chr2R:22312711-22312831 ( 15) TGTGTGCG 1 chrX:8409238-8409358 ( 71) TGTGTGCT 1 chr3L:17047819-17047939 ( 55) TGTTTATG 1 chr3L:4614075-4614195 ( 31) TGTTTATT 1 chr2R:18397647-18397767 ( 13) TGTTTATT 1 chr2R:15480293-15480413 ( 60) TGTTTATG 1 chr2L:3121913-3122033 ( 57) TGTTTATC 1 chr3L:3789282-3789402 ( 91) TGTTTATC 1 chr2R:12441401-12441521 ( 84) TGTTTATT 1 chr3L:17625114-17625234 ( 96) TGTTTATG 1 chrX:12667138-12667258 ( 73) TGTTTATT 1 chr2R:22669239-22669359 ( 26) TGTGTGCA 1 chr3L:176052-176172 ( 1) TGTGTGCA 1 chr3L:15500920-15501040 ( 88) TGTTTATA 1 chr3L:18833395-18833515 ( 66) TGTTTATA 1 chr3R:10605058-10605178 ( 55) TGTGTACT 1 chr3L:11540382-11540502 ( 40) TGTGTGTC 1 chrX:11350766-11350886 ( 70) TGTGTGTG 1 chr3R:17078132-17078252 ( 76) TGTGTGTG 1 chr2R:14332305-14332425 ( 5) TGTGTGTT 1 chrX:13626057-13626177 ( 50) TGTGTACA 1 chr3L:3078925-3079045 ( 58) TGTGTACA 1 chr3R:28330922-28331042 ( 113) TGTGTACA 1 chr3L:11292394-11292514 ( 87) TGTGTACA 1 chrX:515848-515968 ( 69) TGTGTACA 1 chr2L:10249771-10249891 ( 46) TGTGTATG 1 chr3R:20263834-20263954 ( 73) TGTGTATC 1 chr2R:9862002-9862122 ( 65) TGTGTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4064 E= 2.1e-008 -1281 -1281 -1281 187 -1281 -1281 217 -1281 -1281 -1281 -1281 187 -1281 -1281 25 143 -1281 -1281 -1281 187 68 -1281 129 -1281 -1281 141 -1281 61 -27 10 9 9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 2.1e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.263889 0.736111 0.000000 0.000000 0.000000 1.000000 0.458333 0.000000 0.541667 0.000000 0.000000 0.583333 0.000000 0.416667 0.236111 0.236111 0.236111 0.291667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRYN MEME-2 regular expression -------------------------------------------------------------------------------- TGT[TG]T[GA][CT][TACG] -------------------------------------------------------------------------------- Time 13.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGWK MEME-3 width = 8 sites = 17 llr = 168 E-value = 8.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::6: pos.-specific C a::a:::: probability G ::a::a:4 matrix T ::::a:46 bits 2.2 * ** * 2.0 * **** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** * (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGAT consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13171354-13171474 33 1.44e-05 AGTTGGCCGG CAGCTGAT AAATGAGCAC chr2L:2376290-2376410 71 1.44e-05 TTGTCAAAAA CAGCTGAT CCAGACCAAG chr2R:17586063-17586183 62 1.44e-05 CAACAAAAAA CAGCTGAT TACAATTAAC chr2R:10618561-10618681 53 1.44e-05 GTATGCAAGA CAGCTGAT TGTCAGAATG chr3L:4413961-4414081 87 1.44e-05 AACGTCAGAG CAGCTGAT CGGAGAGCGA chr2L:5547546-5547666 9 1.44e-05 CGGCTTAT CAGCTGAT TTGGACAATA chr3R:16441591-16441711 81 2.83e-05 GTGTCACAGT CAGCTGTT GCTTCCGCCC chr3L:11493588-11493708 33 2.83e-05 GCTGATTTTC CAGCTGTT GTTGCCAGGT chr3L:11580045-11580165 110 2.83e-05 GATAATAACA CAGCTGTT CAA chr3R:15935086-15935206 28 2.83e-05 CGACAGCAGT CAGCTGTT CGATGGGCAG chr2L:13190695-13190815 31 2.83e-05 GGTTGGTGGC CAGCTGTT GGGCCAAAGC chr2R:22312711-22312831 35 4.00e-05 ATGTATGCGG CAGCTGAG TGGCAAAACT chr3R:24571827-24571947 111 4.00e-05 TTCGACCGAG CAGCTGAG CG chr2R:13545494-13545614 98 4.00e-05 GGTTGGAAAT CAGCTGAG CGCAGCCACG chr3L:17531540-17531660 100 4.00e-05 GATTGCCAAA CAGCTGAG TCGTGTAGAT chr2R:22162272-22162392 55 5.13e-05 ATTGCGATAC CAGCTGTG GGTAAAAACA chr2L:20390156-20390276 99 5.13e-05 GCAAAGAGCC CAGCTGTG AAAAAAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13171354-13171474 1.4e-05 32_[+3]_80 chr2L:2376290-2376410 1.4e-05 70_[+3]_42 chr2R:17586063-17586183 1.4e-05 61_[+3]_51 chr2R:10618561-10618681 1.4e-05 52_[+3]_60 chr3L:4413961-4414081 1.4e-05 86_[+3]_26 chr2L:5547546-5547666 1.4e-05 8_[+3]_104 chr3R:16441591-16441711 2.8e-05 80_[+3]_32 chr3L:11493588-11493708 2.8e-05 32_[+3]_80 chr3L:11580045-11580165 2.8e-05 109_[+3]_3 chr3R:15935086-15935206 2.8e-05 27_[+3]_85 chr2L:13190695-13190815 2.8e-05 30_[+3]_82 chr2R:22312711-22312831 4e-05 34_[+3]_78 chr3R:24571827-24571947 4e-05 110_[+3]_2 chr2R:13545494-13545614 4e-05 97_[+3]_15 chr3L:17531540-17531660 4e-05 99_[+3]_13 chr2R:22162272-22162392 5.1e-05 54_[+3]_58 chr2L:20390156-20390276 5.1e-05 98_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGWK width=8 seqs=17 chr2R:13171354-13171474 ( 33) CAGCTGAT 1 chr2L:2376290-2376410 ( 71) CAGCTGAT 1 chr2R:17586063-17586183 ( 62) CAGCTGAT 1 chr2R:10618561-10618681 ( 53) CAGCTGAT 1 chr3L:4413961-4414081 ( 87) CAGCTGAT 1 chr2L:5547546-5547666 ( 9) CAGCTGAT 1 chr3R:16441591-16441711 ( 81) CAGCTGTT 1 chr3L:11493588-11493708 ( 33) CAGCTGTT 1 chr3L:11580045-11580165 ( 110) CAGCTGTT 1 chr3R:15935086-15935206 ( 28) CAGCTGTT 1 chr2L:13190695-13190815 ( 31) CAGCTGTT 1 chr2R:22312711-22312831 ( 35) CAGCTGAG 1 chr3R:24571827-24571947 ( 111) CAGCTGAG 1 chr2R:13545494-13545614 ( 98) CAGCTGAG 1 chr3L:17531540-17531660 ( 100) CAGCTGAG 1 chr2R:22162272-22162392 ( 55) CAGCTGTG 1 chr2L:20390156-20390276 ( 99) CAGCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 8.9e+001 -1073 219 -1073 -1073 181 -1073 -1073 -1073 -1073 -1073 217 -1073 -1073 219 -1073 -1073 -1073 -1073 -1073 187 -1073 -1073 217 -1073 104 -1073 -1073 59 -1073 -1073 67 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 8.9e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.588235 0.000000 0.000000 0.411765 0.000000 0.000000 0.352941 0.647059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-3 regular expression -------------------------------------------------------------------------------- CAGCTG[AT][TG] -------------------------------------------------------------------------------- Time 19.50 secs. ******************************************************************************** ******************************************************************************** MOTIF BYGSCAGC MEME-4 width = 8 sites = 24 llr = 215 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::a:: pos.-specific C 35:6a::a probability G 3:a4::a: matrix T 35:::::: bits 2.2 * * ** 2.0 * * ** 1.7 * **** 1.5 * **** Relative 1.3 ****** Entropy 1.1 ******* (12.9 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TCGCCAGC consensus GT G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21549085-21549205 100 7.30e-06 TGCGCATTGT GCGCCAGC AACTGTGCAA chr2L:9908652-9908772 1 7.30e-06 . GCGCCAGC CGAAAGCTCT chr2R:18539967-18540087 63 1.63e-05 AGAGCGGCAG TCGCCAGC GGAAACGGAA chrX:11350766-11350886 4 1.63e-05 ATT TCGCCAGC AAAACGCCGA chr2R:23964811-23964931 102 2.35e-05 AACCGCTTCA CCGCCAGC TTCATCCGCA chr2L:7702781-7702901 28 4.37e-05 GAGAAATCAG TTGCCAGC GAGCTTTCAA chr2R:5982022-5982142 28 4.37e-05 TTTTTGTTGG TTGCCAGC AGTCCAGCAT chr3R:30919064-30919184 29 4.37e-05 ctatttttTA TTGCCAGC TAGTCCTTAG chr3R:25329196-25329316 26 4.37e-05 ATCGGGTATT TTGCCAGC CGCCATTGTA chr2L:8694370-8694490 24 6.01e-05 TCGCAGCTCC GCGGCAGC GACTCAATAA chr3L:3038164-3038284 92 6.01e-05 aacaacggcg gcggcagc gacagcggtt chr2L:19935259-19935379 10 6.01e-05 CCAATCCGA CTGCCAGC GGAGCAgcac chrX:5917090-5917210 26 6.01e-05 AGCAACATTG CTGCCAGC CAAAGTCTAT chr2R:23378297-23378417 30 6.01e-05 TCATCATTAG CTGCCAGC CATATAAGAG chr3L:20516550-20516670 58 6.01e-05 CCACTGTGCG GCGGCAGC GGCTCTAAAA chr3L:11292394-11292514 101 6.01e-05 TACAGCAGAA GCGGCAGC GCAAATCAAA chr3R:16626003-16626123 48 6.01e-05 acgacgtaca cTGCCAGC GCATAAACAA chrX:19261867-19261987 60 6.92e-05 TCTGAGCAAC TCGGCAGC CGCAAGCACT chr2R:13897596-13897716 42 7.65e-05 ATTTCGTTCA CCGGCAGC AAGTCGGCAC chr3L:9430374-9430494 50 8.56e-05 ATATTGCACG GTGGCAGC AGAGAAAGAG chr3L:176052-176172 77 9.69e-05 GGTCGAGCTT TTGGCAGC CACAGTCGCT chr3L:8347487-8347607 65 1.15e-04 TCGTTGCCCA ACGCCAGC TGTGCACACA chr2R:17272590-17272710 30 1.27e-04 AAAAATTCAG ATGCCAGC ACAGCTGCCT chr3L:15500920-15501040 45 1.36e-04 GTTTGTTGTT ACGGCAGC CGCCAGTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21549085-21549205 7.3e-06 99_[+4]_13 chr2L:9908652-9908772 7.3e-06 [+4]_112 chr2R:18539967-18540087 1.6e-05 62_[+4]_50 chrX:11350766-11350886 1.6e-05 3_[+4]_109 chr2R:23964811-23964931 2.4e-05 101_[+4]_11 chr2L:7702781-7702901 4.4e-05 27_[+4]_85 chr2R:5982022-5982142 4.4e-05 27_[+4]_85 chr3R:30919064-30919184 4.4e-05 28_[+4]_84 chr3R:25329196-25329316 4.4e-05 25_[+4]_87 chr2L:8694370-8694490 6e-05 23_[+4]_89 chr3L:3038164-3038284 6e-05 91_[+4]_21 chr2L:19935259-19935379 6e-05 9_[+4]_103 chrX:5917090-5917210 6e-05 25_[+4]_87 chr2R:23378297-23378417 6e-05 29_[+4]_83 chr3L:20516550-20516670 6e-05 57_[+4]_55 chr3L:11292394-11292514 6e-05 100_[+4]_12 chr3R:16626003-16626123 6e-05 47_[+4]_65 chrX:19261867-19261987 6.9e-05 59_[+4]_53 chr2R:13897596-13897716 7.6e-05 41_[+4]_71 chr3L:9430374-9430494 8.6e-05 49_[+4]_63 chr3L:176052-176172 9.7e-05 76_[+4]_36 chr3L:8347487-8347607 0.00012 64_[+4]_48 chr2R:17272590-17272710 0.00013 29_[+4]_83 chr3L:15500920-15501040 0.00014 44_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BYGSCAGC width=8 seqs=24 chr2R:21549085-21549205 ( 100) GCGCCAGC 1 chr2L:9908652-9908772 ( 1) GCGCCAGC 1 chr2R:18539967-18540087 ( 63) TCGCCAGC 1 chrX:11350766-11350886 ( 4) TCGCCAGC 1 chr2R:23964811-23964931 ( 102) CCGCCAGC 1 chr2L:7702781-7702901 ( 28) TTGCCAGC 1 chr2R:5982022-5982142 ( 28) TTGCCAGC 1 chr3R:30919064-30919184 ( 29) TTGCCAGC 1 chr3R:25329196-25329316 ( 26) TTGCCAGC 1 chr2L:8694370-8694490 ( 24) GCGGCAGC 1 chr3L:3038164-3038284 ( 92) GCGGCAGC 1 chr2L:19935259-19935379 ( 10) CTGCCAGC 1 chrX:5917090-5917210 ( 26) CTGCCAGC 1 chr2R:23378297-23378417 ( 30) CTGCCAGC 1 chr3L:20516550-20516670 ( 58) GCGGCAGC 1 chr3L:11292394-11292514 ( 101) GCGGCAGC 1 chr3R:16626003-16626123 ( 48) CTGCCAGC 1 chrX:19261867-19261987 ( 60) TCGGCAGC 1 chr2R:13897596-13897716 ( 42) CCGGCAGC 1 chr3L:9430374-9430494 ( 50) GTGGCAGC 1 chr3L:176052-176172 ( 77) TTGGCAGC 1 chr3L:8347487-8347607 ( 65) ACGCCAGC 1 chr2R:17272590-17272710 ( 30) ATGCCAGC 1 chr3L:15500920-15501040 ( 45) ACGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 1.7e+004 -119 19 39 29 -1123 130 -1123 75 -1123 -1123 217 -1123 -1123 151 76 -1123 -1123 219 -1123 -1123 181 -1123 -1123 -1123 -1123 -1123 217 -1123 -1123 219 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.7e+004 0.125000 0.250000 0.291667 0.333333 0.000000 0.541667 0.000000 0.458333 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGSCAGC MEME-4 regular expression -------------------------------------------------------------------------------- [TGC][CT]G[CG]CAGC -------------------------------------------------------------------------------- Time 25.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGCC MEME-5 width = 8 sites = 2 llr = 24 E-value = 4.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aa:aa probability G ::a::a:: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16573797-16573917 82 5.59e-06 AACATTCGAA CCGCCGCC AACAACAATT chr2L:19054336-19054456 68 5.59e-06 Cccccgccac ccgccgcc cgcgcacccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16573797-16573917 5.6e-06 81_[+5]_31 chr2L:19054336-19054456 5.6e-06 67_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGCC width=8 seqs=2 chrX:16573797-16573917 ( 82) CCGCCGCC 1 chr2L:19054336-19054456 ( 68) CCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 4.3e+004 -765 218 -765 -765 -765 218 -765 -765 -765 -765 217 -765 -765 218 -765 -765 -765 218 -765 -765 -765 -765 217 -765 -765 218 -765 -765 -765 218 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- CCGCCGCC -------------------------------------------------------------------------------- Time 31.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21163411-21163531 7.78e-01 120 chr3R:4746487-4746607 2.89e-01 120 chr2L:13801311-13801431 2.79e-01 120 chr3L:18833395-18833515 2.30e-01 120 chr2L:19548256-19548376 7.39e-01 120 chr2R:17714497-17714617 3.29e-01 120 chrX:12667138-12667258 1.37e-02 50_[+1(8.18e-05)]_62 chr3R:11688312-11688432 5.04e-01 120 chr3R:23740799-23740919 7.81e-01 120 chr2L:5547546-5547666 1.07e-02 8_[+3(1.44e-05)]_104 chr2R:18818495-18818615 9.74e-01 120 chr2L:6462279-6462399 5.11e-03 71_[+2(4.31e-05)]_41 chr2R:8131966-8132086 1.05e-01 120 chr2L:2236788-2236908 6.51e-01 120 chr3L:12203812-12203932 3.21e-01 120 chr2R:17086963-17087083 4.50e-02 120 chr2R:17694642-17694762 2.53e-01 75_[+1(8.18e-05)]_37 chrX:13088645-13088765 7.58e-02 120 chr2R:21312438-21312558 7.48e-01 120 chr2R:11426851-11426971 9.50e-01 120 chr2L:20840627-20840747 7.69e-01 120 chr3L:18144772-18144892 4.18e-01 120 chr3L:17539036-17539156 8.37e-01 120 chr2L:6792151-6792271 5.05e-01 120 chr2L:9907343-9907463 8.07e-01 120 chr3R:23284387-23284507 2.23e-01 34_[+1(8.18e-05)]_78 chr3L:4355196-4355316 3.00e-01 120 chr2L:1125483-1125603 1.63e-01 120 chr3L:17625114-17625234 4.70e-01 120 chr2L:7215836-7215956 1.86e-01 65_[+2(6.02e-05)]_47 chr3L:19992085-19992205 3.50e-01 120 chr2R:21158383-21158503 4.65e-01 120 chrX:19261867-19261987 2.28e-02 59_[+4(6.92e-05)]_53 chrX:6694551-6694671 2.03e-02 120 chrX:18082883-18083003 4.78e-01 120 chr2R:12441401-12441521 1.06e-01 120 chr2L:2861583-2861703 9.13e-03 21_[+2(6.02e-05)]_91 chrX:4956019-4956139 7.74e-01 120 chr2R:7474748-7474868 4.15e-01 120 chr2R:22390379-22390499 6.43e-01 120 chr2R:11706323-11706443 7.82e-02 120 chr3L:11285814-11285934 4.52e-01 120 chr2R:22199997-22200117 3.35e-01 120 chr2L:6082961-6083081 6.54e-02 120 chr3R:22573691-22573811 3.38e-02 62_[+2(6.02e-05)]_50 chr3R:20317746-20317866 1.25e-01 120 chr3L:9614660-9614780 4.23e-01 120 chr2L:19054336-19054456 1.43e-02 67_[+5(5.59e-06)]_45 chr3R:4359786-4359906 7.74e-01 120 chr2R:9862002-9862122 3.97e-01 120 chr3L:8121706-8121826 2.94e-01 120 chr3L:20188384-20188504 2.25e-01 120 chr3L:5753049-5753169 7.58e-01 120 chrX:515848-515968 7.31e-02 78_[+1(8.18e-05)]_34 chr2R:23964811-23964931 4.99e-02 101_[+4(2.35e-05)]_11 chr3R:26185400-26185520 7.51e-01 120 chr3L:20406444-20406564 9.71e-01 120 chr2L:1218063-1218183 1.29e-01 120 chr3R:31220737-31220857 6.32e-02 120 chr2L:1094879-1094999 6.02e-01 120 chr2R:7451109-7451229 1.07e-01 120 chr2R:6686974-6687094 2.82e-01 120 chr3L:3417868-3417988 3.31e-01 120 chr3L:12804108-12804228 8.38e-02 120 chr2R:12670252-12670372 7.06e-01 120 chr3L:1502556-1502676 9.83e-01 120 chr2R:13990436-13990556 1.74e-01 120 chr3L:15689616-15689736 2.49e-01 62_[+1(8.18e-05)]_50 chr3R:31722108-31722228 8.69e-01 120 chr2L:11736129-11736249 5.78e-01 120 chr3R:16626003-16626123 1.98e-03 47_[+4(6.01e-05)]_65 chr3R:23947128-23947248 2.19e-02 67_[+2(4.31e-05)]_45 chr3L:11292394-11292514 1.00e-03 100_[+4(6.01e-05)]_12 chr2R:21702780-21702900 6.52e-01 120 chr3L:176052-176172 2.32e-02 76_[+4(9.69e-05)]_36 chr3R:6182652-6182772 8.41e-02 120 chr2R:17686584-17686704 2.71e-01 120 chr2L:9908652-9908772 4.25e-03 [+4(7.30e-06)]_112 chr2R:20252226-20252346 9.50e-01 120 chr3R:16338477-16338597 1.80e-04 [+1(8.18e-05)]_25_[+3(7.37e-05)]_52_\ [+2(4.31e-05)]_19 chr3L:15548937-15549057 3.83e-03 49_[+1(8.18e-05)]_51_[+2(4.31e-05)]_\ 4 chr3R:25329196-25329316 7.10e-04 25_[+4(4.37e-05)]_87 chr3L:20516550-20516670 1.02e-02 57_[+4(6.01e-05)]_55 chr2R:12644294-12644414 6.54e-01 120 chr3R:21561443-21561563 2.79e-01 120 chrX:16783983-16784103 8.68e-01 120 chr2R:6811153-6811273 2.66e-01 120 chr2R:25012039-25012159 9.01e-01 120 chr3L:6140298-6140418 2.62e-02 61_[+2(4.31e-05)]_51 chr3L:17531540-17531660 2.85e-02 99_[+3(4.00e-05)]_13 chr3R:17966173-17966293 2.18e-01 120 chr3R:10605058-10605178 3.54e-01 120 chr3L:311702-311822 9.45e-01 120 chr2R:14332305-14332425 4.86e-01 120 chrX:17159912-17160032 2.18e-01 120 chr3R:30919064-30919184 5.24e-03 28_[+4(4.37e-05)]_12_[+2(4.31e-05)]_\ 64 chr3L:8978856-8978976 2.96e-01 120 chr3L:7868969-7869089 1.23e-01 120 chr2L:7525436-7525556 8.45e-01 120 chrX:17294295-17294415 2.30e-01 120 chr2L:20390156-20390276 1.39e-02 65_[+1(8.18e-05)]_[+1(8.18e-05)]_17_\ [+3(5.13e-05)]_14 chr2L:19756855-19756975 7.58e-02 120 chr3R:14569612-14569732 5.91e-01 120 chr3R:29480092-29480212 2.34e-02 120 chr3R:26908946-26909066 1.53e-03 92_[+1(8.18e-05)]_20 chr3R:11648928-11649048 3.30e-01 16_[+1(8.18e-05)]_96 chr3R:28330922-28331042 1.57e-02 120 chr2L:2767793-2767913 7.22e-01 120 chr2R:23378297-23378417 1.07e-01 29_[+4(6.01e-05)]_83 chrX:5917090-5917210 1.32e-01 25_[+4(6.01e-05)]_87 chrX:16573797-16573917 1.27e-04 1_[+2(4.31e-05)]_12_[+2(4.31e-05)]_\ 52_[+5(5.59e-06)]_31 chr3L:3789282-3789402 1.66e-01 120 chr3L:15500920-15501040 8.12e-03 120 chr2R:7011470-7011590 6.24e-02 42_[+2(4.31e-05)]_70 chr3L:19847109-19847229 1.50e-02 120 chr3R:15342909-15343029 2.09e-01 120 chrX:8409238-8409358 5.62e-01 120 chr2L:13190695-13190815 1.70e-02 30_[+3(2.83e-05)]_82 chrX:12661681-12661801 5.51e-01 120 chr3L:1884859-1884979 5.04e-02 41_[+3(1.44e-05)]_4_[+3(1.44e-05)]_\ 59 chr3L:12798911-12799031 1.42e-01 120 chr2R:9565113-9565233 1.77e-01 120 chr2R:9554210-9554330 9.35e-02 120 chr2L:20794035-20794155 7.17e-01 120 chr3L:4413961-4414081 8.71e-02 86_[+3(1.44e-05)]_26 chr3R:14019452-14019572 1.56e-01 120 chr2R:17272590-17272710 1.18e-02 120 chr2R:15675903-15676023 2.58e-02 120 chr3L:17740562-17740682 9.39e-01 120 chr2L:3121913-3122033 3.18e-02 120 chr2R:21481067-21481187 6.35e-01 120 chr3R:30198940-30199060 1.06e-01 37_[+1(8.18e-05)]_75 chr2L:3144903-3145023 3.37e-01 120 chr2R:5982022-5982142 2.26e-03 27_[+4(4.37e-05)]_85 chr2R:15480293-15480413 5.53e-02 120 chr3R:24231264-24231384 3.56e-01 120 chr3L:17044967-17045087 5.06e-01 120 chr2L:8088259-8088379 1.18e-01 91_[+2(4.31e-05)]_21 chr3L:17896030-17896150 4.64e-01 120 chr3L:10681942-10682062 2.27e-03 120 chr3R:25275524-25275644 7.76e-01 120 chr2R:22162272-22162392 1.19e-02 54_[+3(5.13e-05)]_58 chr2L:3373313-3373433 3.68e-01 120 chr2R:20835891-20836011 6.11e-02 120 chr3L:11351390-11351510 3.02e-01 120 chr2R:24275716-24275836 6.45e-02 21_[+1(8.18e-05)]_91 chr3L:21065364-21065484 8.30e-01 120 chr3L:8347487-8347607 4.90e-04 68_[+3(5.13e-05)]_44 chr2L:1207598-1207718 9.96e-01 120 chr2R:13545494-13545614 3.72e-03 97_[+3(4.00e-05)]_15 chr3L:3078925-3079045 9.02e-02 120 chr3R:22631278-22631398 6.64e-01 120 chr3R:10054400-10054520 3.71e-01 120 chr3L:8683952-8684072 3.84e-01 120 chr3R:24571827-24571947 9.21e-03 47_[+2(4.31e-05)]_55_[+3(4.00e-05)]_\ 2 chr2L:7388173-7388293 1.08e-01 30_[+1(8.18e-05)]_82 chr3R:15666130-15666250 5.81e-01 120 chr2R:24295279-24295399 8.78e-02 120 chr2R:22312711-22312831 1.25e-03 34_[+3(4.00e-05)]_78 chr3R:21629853-21629973 7.46e-01 120 chr2R:24746012-24746132 8.56e-02 109_[+1(8.18e-05)]_3 chr2L:19549553-19549673 8.32e-01 120 chr2R:21549085-21549205 1.95e-02 99_[+4(7.30e-06)]_13 chr3R:17828838-17828958 3.49e-01 120 chr3L:9430374-9430494 4.62e-02 49_[+4(8.56e-05)]_63 chr2R:21141905-21142025 4.88e-01 120 chr4:59065-59185 2.20e-03 87_[+1(8.18e-05)]_7_[+2(4.31e-05)]_\ 10 chr2R:6236031-6236151 9.45e-01 120 chr2R:10618561-10618681 9.16e-03 52_[+3(1.44e-05)]_60 chr3R:20832810-20832930 1.21e-01 120 chr3R:14479726-14479846 3.55e-01 120 chr3R:15935086-15935206 4.58e-03 27_[+3(2.83e-05)]_85 chr3R:17078132-17078252 1.71e-01 120 chr2L:7434935-7435055 7.99e-01 120 chr3R:4975382-4975502 4.62e-01 120 chr2R:11712172-11712292 3.87e-01 120 chr2L:16315178-16315298 1.79e-01 120 chrX:13626057-13626177 2.95e-01 120 chr2R:8600421-8600541 2.73e-01 120 chr2L:20429085-20429205 5.03e-01 120 chr2L:7810636-7810756 3.67e-01 120 chr3R:20263834-20263954 2.07e-02 120 chr2L:2168327-2168447 9.08e-02 120 chrX:11350766-11350886 1.45e-03 3_[+4(1.63e-05)]_109 chr2L:19935259-19935379 3.99e-02 9_[+4(6.01e-05)]_103 chr2L:143258-143378 4.40e-02 120 chr3R:29074195-29074315 1.62e-02 33_[+2(4.31e-05)]_79 chrX:10763262-10763382 4.59e-01 120 chr2L:12046714-12046834 7.00e-01 120 chr3R:19153603-19153723 2.32e-03 120 chr2R:23385749-23385869 8.77e-01 120 chr3L:7359975-7360095 1.93e-01 120 chr2R:11190894-11191014 5.10e-01 120 chr2R:18539967-18540087 5.01e-04 17_[+5(5.59e-06)]_37_[+4(1.63e-05)]_\ 50 chr3L:11580045-11580165 9.87e-02 109_[+3(2.83e-05)]_3 chr3L:11493588-11493708 4.77e-03 32_[+3(2.83e-05)]_80 chrX:16333539-16333659 2.18e-01 120 chr2L:7811435-7811555 9.82e-01 120 chr2R:12174123-12174243 4.79e-01 120 chr3L:20954276-20954396 1.54e-01 71_[+2(4.31e-05)]_41 chrX:6820908-6821028 7.64e-01 120 chr3R:10889344-10889464 4.47e-01 120 chr3R:17655168-17655288 4.96e-01 120 chr2R:13897596-13897716 4.03e-03 41_[+4(7.65e-05)]_71 chr2L:8938128-8938248 1.70e-01 120 chr2R:17458312-17458432 1.10e-01 102_[+1(8.18e-05)]_10 chr3L:8058479-8058599 5.96e-01 120 chr3R:15093054-15093174 1.55e-02 74_[+1(8.18e-05)]_38 chr2R:22669239-22669359 7.40e-02 120 chr3L:18994641-18994761 2.05e-01 120 chr3L:11049588-11049708 4.19e-02 120 chr3L:6218681-6218801 7.52e-02 120 chr2R:18397647-18397767 3.01e-01 120 chr3L:11540382-11540502 3.76e-01 120 chr3R:31608898-31609018 3.33e-01 120 chr3R:29068942-29069062 9.38e-01 120 chr3R:29891331-29891451 1.01e-02 44_[+2(4.31e-05)]_68 chr3L:3038164-3038284 1.33e-02 91_[+4(6.01e-05)]_21 chrX:6220107-6220227 9.19e-01 120 chr3R:22464718-22464838 5.73e-01 120 chr3L:17791642-17791762 5.60e-01 120 chr2L:10249771-10249891 1.04e-01 120 chr3L:4614075-4614195 2.64e-02 120 chr3L:17475167-17475287 6.29e-02 120 chr3R:5564894-5565014 4.81e-02 103_[+1(8.18e-05)]_9 chr3R:16441591-16441711 5.05e-03 80_[+3(2.83e-05)]_32 chr2L:7519041-7519161 5.47e-01 120 chr3R:27289839-27289959 9.93e-01 120 chrX:4609882-4610002 1.96e-01 120 chr3R:18585668-18585788 9.63e-01 120 chr2R:17586063-17586183 1.07e-02 61_[+3(1.44e-05)]_51 chr2L:9179359-9179479 5.63e-02 120 chr2L:2376290-2376410 7.93e-04 70_[+3(1.44e-05)]_42 chr2L:9570912-9571032 7.90e-01 120 chr2L:8694370-8694490 7.66e-03 23_[+4(6.01e-05)]_89 chr3L:9762184-9762304 2.12e-01 120 chr2R:22657071-22657191 8.06e-02 120 chr3L:4221346-4221466 9.93e-01 120 chr3L:18398392-18398512 1.21e-01 120 chr3R:10888607-10888727 1.04e-01 120 chr3R:10598358-10598478 7.12e-01 120 chr2L:7702781-7702901 5.04e-02 27_[+4(4.37e-05)]_85 chr2R:13171354-13171474 1.62e-05 32_[+3(1.44e-05)]_33_[+1(8.18e-05)]_\ 39 chr2R:7457701-7457821 1.24e-01 120 chr2R:8242630-8242750 3.29e-02 120 chr3L:629596-629716 6.91e-02 120 chr3R:23725881-23726001 9.14e-01 120 chr3L:6216118-6216238 2.30e-01 120 chr2R:21659964-21660084 4.83e-01 120 chr3L:17047819-17047939 2.93e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************