******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CrebA.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:14382020-14382140 1.0000 120 chr2R:22568981-22569101 1.0000 120 chr3R:23715007-23715127 1.0000 120 chrM:18546-18666 1.0000 120 chrX:5092057-5092177 1.0000 120 chrX:16072355-16072475 1.0000 120 chr3R:14443517-14443637 1.0000 120 chr3R:10434696-10434816 1.0000 120 chr2L:429534-429654 1.0000 120 chr2R:15739043-15739163 1.0000 120 chr3R:16111040-16111160 1.0000 120 chr2R:8737980-8738100 1.0000 120 chr3R:25634547-25634667 1.0000 120 chr3L:3425614-3425734 1.0000 120 chr3R:14398760-14398880 1.0000 120 chrM:16653-16773 1.0000 120 chr2L:5298835-5298955 1.0000 120 chrX:14936464-14936584 1.0000 120 chrM:17661-17781 1.0000 120 chr3L:16477304-16477424 1.0000 120 chr3L:3249378-3249498 1.0000 120 chr2R:12263871-12263991 1.0000 120 chr2L:11965746-11965866 1.0000 120 chr2R:14088777-14088897 1.0000 120 chr2R:12382822-12382942 1.0000 120 chr2R:21570431-21570551 1.0000 120 chrX:12732606-12732726 1.0000 120 chr2R:8463813-8463933 1.0000 120 chr3R:7978521-7978641 1.0000 120 chr3R:7523805-7523925 1.0000 120 chr3R:10595944-10596064 1.0000 120 chr2L:5145090-5145210 1.0000 120 chr2R:8234295-8234415 1.0000 120 chr2R:24285995-24286115 1.0000 120 chr2R:8721773-8721893 1.0000 120 chr3R:20260361-20260481 1.0000 120 chr3L:20926946-20927066 1.0000 120 chr3R:18472815-18472935 1.0000 120 chrX:3139186-3139306 1.0000 120 chr3R:27199008-27199128 1.0000 120 chr2R:9794054-9794174 1.0000 120 chr3R:30314530-30314650 1.0000 120 chr3L:10343470-10343590 1.0000 120 chr3R:26894450-26894570 1.0000 120 chr3R:7322670-7322790 1.0000 120 chr3L:1090144-1090264 1.0000 120 chr2R:12786702-12786822 1.0000 120 chr3L:488217-488337 1.0000 120 chr3R:5813349-5813469 1.0000 120 chr2R:8443025-8443145 1.0000 120 chr2L:7970323-7970443 1.0000 120 chr3R:18445239-18445359 1.0000 120 chr2R:12368431-12368551 1.0000 120 chr3L:21385321-21385441 1.0000 120 chr3R:31437872-31437992 1.0000 120 chr2R:21378273-21378393 1.0000 120 chr3L:607704-607824 1.0000 120 chr2R:14338367-14338487 1.0000 120 chr3L:15648313-15648433 1.0000 120 chr3L:18019090-18019210 1.0000 120 chr3L:10712113-10712233 1.0000 120 chr3L:16167901-16168021 1.0000 120 chr2L:2795563-2795683 1.0000 120 chr3L:14402820-14402940 1.0000 120 chr2L:18789087-18789207 1.0000 120 chr3R:20265959-20266079 1.0000 120 chrX:3151263-3151383 1.0000 120 chr3L:3776892-3777012 1.0000 120 chr3R:17825553-17825673 1.0000 120 chr3L:10223530-10223650 1.0000 120 chr3L:15221141-15221261 1.0000 120 chr3L:1379834-1379954 1.0000 120 chrX:11496542-11496662 1.0000 120 chr3R:19925722-19925842 1.0000 120 chr2R:14315660-14315780 1.0000 120 chr3R:19312463-19312583 1.0000 120 chr2L:9126173-9126293 1.0000 120 chr3L:16155102-16155222 1.0000 120 chrX:16334719-16334839 1.0000 120 chr2R:6867802-6867922 1.0000 120 chr3R:19071362-19071482 1.0000 120 chr2L:669896-670016 1.0000 120 chr3L:7530595-7530715 1.0000 120 chr2L:3307328-3307448 1.0000 120 chr2L:5195708-5195828 1.0000 120 chr3L:13946194-13946314 1.0000 120 chr3R:21851969-21852089 1.0000 120 chr2L:4037093-4037213 1.0000 120 chr3R:30248056-30248176 1.0000 120 chrX:5005671-5005791 1.0000 120 chr3L:19941092-19941212 1.0000 120 chr2L:8327030-8327150 1.0000 120 chr2L:2804009-2804129 1.0000 120 chr3R:23496154-23496274 1.0000 120 chr2L:3770603-3770723 1.0000 120 chr3R:9968369-9968489 1.0000 120 chr2R:13602306-13602426 1.0000 120 chr2R:6173113-6173233 1.0000 120 chr2L:8352008-8352128 1.0000 120 chr2L:18559288-18559408 1.0000 120 chr2R:9443950-9444070 1.0000 120 chr3R:12743768-12743888 1.0000 120 chr3R:19065647-19065767 1.0000 120 chr3L:2801581-2801701 1.0000 120 chr2L:14010529-14010649 1.0000 120 chr3R:14024090-14024210 1.0000 120 chr3R:21007094-21007214 1.0000 120 chr3L:20735545-20735665 1.0000 120 chrM:19285-19405 1.0000 120 chrX:2653956-2654076 1.0000 120 chr3R:17702089-17702209 1.0000 120 chr2L:3305468-3305588 1.0000 120 chr2L:13434985-13435105 1.0000 120 chr2R:22150660-22150780 1.0000 120 chr2R:11607236-11607356 1.0000 120 chr3L:11773092-11773212 1.0000 120 chr2L:7005598-7005718 1.0000 120 chr3L:16984193-16984313 1.0000 120 chr3L:2402344-2402464 1.0000 120 chrM:16006-16126 1.0000 120 chr3R:10683273-10683393 1.0000 120 chr3L:9097486-9097606 1.0000 120 chr3R:19309244-19309364 1.0000 120 chr3L:4365318-4365438 1.0000 120 chr2R:24336638-24336758 1.0000 120 chr3R:21649165-21649285 1.0000 120 chr3R:24278880-24279000 1.0000 120 chr2R:7614306-7614426 1.0000 120 chr3L:9063697-9063817 1.0000 120 chr3L:14618923-14619043 1.0000 120 chr3R:11805618-11805738 1.0000 120 chr2L:3354454-3354574 1.0000 120 chr2R:11340177-11340297 1.0000 120 chr3L:3096742-3096862 1.0000 120 chr3L:7792873-7792993 1.0000 120 chrX:2301760-2301880 1.0000 120 chr3L:11320233-11320353 1.0000 120 chrX:17109771-17109891 1.0000 120 chrX:11819645-11819765 1.0000 120 chrM:17226-17346 1.0000 120 chr2L:2810791-2810911 1.0000 120 chr2L:9187687-9187807 1.0000 120 chr3L:11526911-11527031 1.0000 120 chr2R:10531563-10531683 1.0000 120 chr2L:12495341-12495461 1.0000 120 chr3L:8369096-8369216 1.0000 120 chr2L:15035224-15035344 1.0000 120 chr2R:13431934-13432054 1.0000 120 chr2R:7759912-7760032 1.0000 120 chr3R:21954326-21954446 1.0000 120 chr3R:31435609-31435729 1.0000 120 chr3L:22135164-22135284 1.0000 120 chr3R:12720614-12720734 1.0000 120 chrX:3772869-3772989 1.0000 120 chrX:7339189-7339309 1.0000 120 chr2L:19321958-19322078 1.0000 120 chr2L:2009327-2009447 1.0000 120 chr2R:13918687-13918807 1.0000 120 chrX:3751163-3751283 1.0000 120 chr3R:7541420-7541540 1.0000 120 chrX:16703929-16704049 1.0000 120 chr2R:14338566-14338686 1.0000 120 chr3R:4761517-4761637 1.0000 120 chr3L:13952841-13952961 1.0000 120 chr3L:15761743-15761863 1.0000 120 chr3R:19225478-19225598 1.0000 120 chr2R:17834066-17834186 1.0000 120 chrX:17732208-17732328 1.0000 120 chr2R:11107499-11107619 1.0000 120 chrX:10113694-10113814 1.0000 120 chrX:7694333-7694453 1.0000 120 chr2R:11405276-11405396 1.0000 120 chr3R:17379995-17380115 1.0000 120 chr3R:10599695-10599815 1.0000 120 chr2L:5253685-5253805 1.0000 120 chr2L:21030387-21030507 1.0000 120 chr2L:13069900-13070020 1.0000 120 chrX:18974691-18974811 1.0000 120 chr3L:11369964-11370084 1.0000 120 chr3L:1548136-1548256 1.0000 120 chr2R:6162682-6162802 1.0000 120 chr3R:5307570-5307690 1.0000 120 chr2L:12522047-12522167 1.0000 120 chr3L:16895774-16895894 1.0000 120 chrX:12658511-12658631 1.0000 120 chr3R:21180132-21180252 1.0000 120 chr2L:9451625-9451745 1.0000 120 chr3L:5852557-5852677 1.0000 120 chr2L:11969264-11969384 1.0000 120 chr2L:3561160-3561280 1.0000 120 chr2R:6522709-6522829 1.0000 120 chrX:19149409-19149529 1.0000 120 chrX:17623031-17623151 1.0000 120 chr3L:10530946-10531066 1.0000 120 chr3L:17925307-17925427 1.0000 120 chr2L:20316696-20316816 1.0000 120 chr2R:7750448-7750568 1.0000 120 chr3R:20765384-20765504 1.0000 120 chrX:18926246-18926366 1.0000 120 chr3R:17132299-17132419 1.0000 120 chrX:11430262-11430382 1.0000 120 chr3R:21977151-21977271 1.0000 120 chr3R:7472059-7472179 1.0000 120 chrX:1826789-1826909 1.0000 120 chr3L:11428487-11428607 1.0000 120 chr3R:14736230-14736350 1.0000 120 chr3R:7536465-7536585 1.0000 120 chr4:315394-315514 1.0000 120 chr3L:14619123-14619243 1.0000 120 chr2R:18312383-18312503 1.0000 120 chr2R:22740562-22740682 1.0000 120 chr3L:15547531-15547651 1.0000 120 chr3L:14202457-14202577 1.0000 120 chr3R:21151842-21151962 1.0000 120 chr2R:12336317-12336437 1.0000 120 chr3R:23333193-23333313 1.0000 120 chr2R:19249588-19249708 1.0000 120 chr3R:8876167-8876287 1.0000 120 chr2R:10778299-10778419 1.0000 120 chr3L:21389821-21389941 1.0000 120 chr3L:3924011-3924131 1.0000 120 chr3L:16194519-16194639 1.0000 120 chr2L:3642629-3642749 1.0000 120 chr2R:9028922-9029042 1.0000 120 chr3R:12960374-12960494 1.0000 120 chr3L:9379916-9380036 1.0000 120 chr3L:17570642-17570762 1.0000 120 chrX:3412858-3412978 1.0000 120 chr2L:3356914-3357034 1.0000 120 chr3L:17921662-17921782 1.0000 120 chr3L:16914245-16914365 1.0000 120 chr3L:6831845-6831965 1.0000 120 chr3L:4161013-4161133 1.0000 120 chr2R:23721828-23721948 1.0000 120 chr3R:11982705-11982825 1.0000 120 chr3R:7058147-7058267 1.0000 120 chrX:1271254-1271374 1.0000 120 chrX:10783584-10783704 1.0000 120 chr2L:9012022-9012142 1.0000 120 chr3L:8842495-8842615 1.0000 120 chr2L:4588730-4588850 1.0000 120 chr3R:29282955-29283075 1.0000 120 chr2L:634934-635054 1.0000 120 chr2L:20773797-20773917 1.0000 120 chr2R:14220791-14220911 1.0000 120 chr3R:11449825-11449945 1.0000 120 chr2L:6194245-6194365 1.0000 120 chr3R:7475235-7475355 1.0000 120 chr2L:20887456-20887576 1.0000 120 chr3L:21108980-21109100 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CrebA/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CrebA.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.324 C 0.194 G 0.191 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.324 C 0.194 G 0.191 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 79 llr = 620 E-value = 5.8e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::11::: pos.-specific C ::1::::: probability G :::3:::1 matrix T 9a969aa9 bits 2.4 2.2 1.9 1.7 * ** Relative 1.4 *** **** Entropy 1.2 *** **** (11.3 bits) 1.0 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6194245-6194365 34 5.14e-05 TGTTTGCCTC tttttttt ttgtattttt chr3R:29282955-29283075 77 5.14e-05 TTCCTTTACT TTTTTTTT GCGCCTTTTT chr2L:4588730-4588850 50 5.14e-05 TCTGGCCGGG TTTTTTTT GGCAACCCGC chrX:10783584-10783704 93 5.14e-05 GCCACGGTTT TTTTTTTT GGCAGTTGGC chr3L:16194519-16194639 45 5.14e-05 GTCGCCGTTT TTTTTTTT GTTTTTGCTG chr3L:15547531-15547651 68 5.14e-05 GAAATCAGTT TTTTTTTT TATACAATAT chr3L:5852557-5852677 48 5.14e-05 ttgttgcatt tttttttt tttgatcttt chr2L:21030387-21030507 100 5.14e-05 GTTTGTATCT TTTTTTTT AGTCCGGCTT chr3R:10599695-10599815 82 5.14e-05 CTGTATTTCT TTTTTTTT ATCATTAAAA chr3R:4761517-4761637 22 5.14e-05 tttttttcct tttttttt tatttatttt chr3R:21954326-21954446 10 5.14e-05 TTTTCCTTC TTTTTTTT GTGTAACAAA chr2R:13431934-13432054 20 5.14e-05 GCAAAAAAAT TTTTTTTT AATGCACCGT chr3L:8369096-8369216 33 5.14e-05 gtgtgtgttt tttttttt tGGTTTGCCA chr2R:10531563-10531683 38 5.14e-05 TTTCATATTG TTTTTTTT TTCTCTGCGC chr3L:9097486-9097606 23 5.14e-05 TTATTCGTTT TTTTTTTT CTGGACCGAA chrM:16006-16126 65 5.14e-05 TAAAAAATAT TTTTTTTT AAAAAAAAAT chr3L:11773092-11773212 65 5.14e-05 TTTTGGTTTT TTTTTTTT TAATAATTTG chr3L:2801581-2801701 18 5.14e-05 CTGTCTGCTC TTTTTTTT CTGCAGCGTC chr2L:8327030-8327150 113 5.14e-05 TTTATTTACT TTTTTTTT chrX:5005671-5005791 61 5.14e-05 ttttgttttt tttttttt taattttttC chr3R:30248056-30248176 45 5.14e-05 AAAATGTACA TTTTTTTT TCTAAAAATA chr2L:4037093-4037213 10 5.14e-05 TTCAGCACT TTTTTTTT TCTTTGCCCA chr3L:16155102-16155222 37 5.14e-05 TATGATACCC TTTTTTTT TCTTCGATTT chrX:3151263-3151383 108 5.14e-05 GCTCCCtttt tttttttt ttttt chr3L:10712113-10712233 94 5.14e-05 tttcgttttt tttttttt atatttGGAC chr3R:26894450-26894570 113 5.14e-05 GTTGTTATTC TTTTTTTT chr3L:20926946-20927066 45 5.14e-05 ATAAATATCC TTTTTTTT ATCTTCGTCT chr2R:8234295-8234415 41 5.14e-05 ctttctttcc tttttttt cttATTCCCG chr2R:21570431-21570551 55 5.14e-05 AGGCGTATAA tttttttt tttttttttt chr3L:16477304-16477424 96 5.14e-05 GTTTGTGGCT TTTTTTTT GCTGCGGCTT chrM:17661-17781 48 5.14e-05 AAAAAATAAT TTTTTTTT AAAAAAAAAC chr3R:14398760-14398880 16 5.14e-05 TGTGCGGGTT TTTTTTTT TTACGAAGGT chr3R:16111040-16111160 98 5.14e-05 tttgtttttt tttttttt tttttGGGCT chrM:18546-18666 92 5.14e-05 AAAAAATAAT TTTTTTTT AAAAAAACTA chr3R:11449825-11449945 79 8.52e-05 TTCACTTTGT TTTGTTTT TATTCAACTG chr3L:17570642-17570762 81 8.52e-05 TTTCCGATGA TTTGTTTT TATTTCGGCT chr2R:22740562-22740682 63 8.52e-05 TGTTGGCGCT TTTGTTTT GGGCCCCCAA chr3R:7536465-7536585 75 8.52e-05 GTATTTGGTT TTTGTTTT TTCACAAAAG chrX:18974691-18974811 48 8.52e-05 TGCCGTTTTG TTTGTTTT TGTGTCCGCT chr3L:9063697-9063817 78 8.52e-05 AAATGCGAAT TTTGTTTT GCACATGTGC chr3L:7530595-7530715 1 8.52e-05 . TTTGTTTT GATACCAACA chr2R:6867802-6867922 43 8.52e-05 GTTGCTTCGT TTTGTTTT GCTCAAAGAT chrX:16334719-16334839 25 8.52e-05 GCGTCTCGCT TTTGTTTT TAGTTATTAA chrX:16072355-16072475 10 8.52e-05 CGTGTTTAT TTTGTTTT TGTATACGTT chr2R:23721828-23721948 108 1.76e-04 TTGTTTGCCT TTTATTTT TGGCA chr3L:14202457-14202577 87 1.76e-04 GCTGTTGGAA TTTATTTT TTCGCTCATC chrX:1826789-1826909 18 1.76e-04 CTTTTTTCGA TTTTTTTG GCAATGGCAT chr2R:6522709-6522829 50 1.76e-04 AAATATTCTT TTTATTTT AATGCGACGG chr3L:16895774-16895894 67 1.76e-04 GACCTTCTTT TTTATTTT TGTAATACTC chr2R:6162682-6162802 113 1.76e-04 atttttaata tttttttg chrX:7339189-7339309 9 1.76e-04 TGTTTCTC TTTATTTT CGAGACGCGC chr2L:3354454-3354574 90 1.76e-04 TCGTCAGCAC TTTTTTTG CAATTTAAAT chr3L:15648313-15648433 52 1.76e-04 AAAATTGTAA TTTATTTT AATTATTGAC chr2R:14338367-14338487 7 1.76e-04 CCACGT TTTATTTT GGGTGATTTT chr3R:25634547-25634667 45 1.76e-04 TTTGCTTTGC TTTATTTT AGATGCTCTT chr2R:14338566-14338686 73 2.33e-04 ATCGGTCGAA TTTGTTTG GATTTATTGC chr2L:9187687-9187807 4 2.33e-04 TGT TTCTTTTT ACTGTTTGTG chr3L:4365318-4365438 23 2.33e-04 AATGTTTGTC TTTGTTTG GTTTATGGCG chr3L:16984193-16984313 69 2.33e-04 TGCTTATCAG TTTGTTTG GGTTTGCTTA chr3L:4161013-4161133 37 2.55e-04 GCCGGGCGCT TTCGTTTT CTATCAGCCG chr3L:6831845-6831965 48 2.55e-04 GCACCTTGAC TTCGTTTT GGGTTTTGGT chr2R:24285995-24286115 47 2.55e-04 TTGCCAACGT TTCGTTTT GTGCGCTCGA chr3R:11982705-11982825 92 3.12e-04 GAGGGAGTGG ATTTTTTT AAGGGAAAGT chr4:315394-315514 14 3.12e-04 TTGTAACACT ATTTTTTT ATTAGTTACT chr2L:3770603-3770723 3 3.12e-04 TT ATTTTTTT CCAAGTTCCC chrX:17109771-17109891 20 3.70e-04 CTATACGGTT TTTTATTT GCCTTTTTTT chr3R:21007094-21007214 50 3.70e-04 CGAACCGTGC TTTTATTT ACGACGGCCA chr3L:8842495-8842615 73 4.07e-04 TCAATTGTTT ATTGTTTT GATAATGCGT chr2R:7614306-7614426 23 4.07e-04 CAGGCGTTTG ATTGTTTT ACGAGTGCCG chr2R:9443950-9444070 46 4.07e-04 TTTCTCACTC ATTGTTTT ATAAGGCGAA chr3R:14736230-14736350 98 4.45e-04 CTTGAATGAG TTTGATTT CCTTACGACC chr2R:8721773-8721893 19 4.45e-04 CTTCGCCTGA TTTGATTT GCAGCCTGTG chr3R:7978521-7978641 7 4.45e-04 CTCGAG TTTGATTT AATTATACCT chr2R:7750448-7750568 17 5.17e-04 GCTTACATAC TTTATTTG TATAGTAGGT chr3R:21851969-21852089 69 5.17e-04 GGTGTTTCGC TTTTTCTT CTTTCTTATC chr3R:18445239-18445359 106 5.17e-04 AGCTCAAAGC tttttctt tattatt chr3L:7792873-7792993 45 6.00e-04 TTCACACAAT TTCATTTT GGTTCTAGTC chr3R:11805618-11805738 72 6.00e-04 TTTAAGGAGG TTCTTTTG TAATACTCCA chrX:11496542-11496662 40 6.00e-04 AAGAAATGCC TTCTTTTG GCTACAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6194245-6194365 5.1e-05 33_[+1]_79 chr3R:29282955-29283075 5.1e-05 76_[+1]_36 chr2L:4588730-4588850 5.1e-05 49_[+1]_63 chrX:10783584-10783704 5.1e-05 92_[+1]_20 chr3L:16194519-16194639 5.1e-05 44_[+1]_68 chr3L:15547531-15547651 5.1e-05 67_[+1]_45 chr3L:5852557-5852677 5.1e-05 47_[+1]_65 chr2L:21030387-21030507 5.1e-05 99_[+1]_13 chr3R:10599695-10599815 5.1e-05 81_[+1]_31 chr3R:4761517-4761637 5.1e-05 21_[+1]_91 chr3R:21954326-21954446 5.1e-05 9_[+1]_103 chr2R:13431934-13432054 5.1e-05 19_[+1]_93 chr3L:8369096-8369216 5.1e-05 32_[+1]_80 chr2R:10531563-10531683 5.1e-05 37_[+1]_75 chr3L:9097486-9097606 5.1e-05 22_[+1]_90 chrM:16006-16126 5.1e-05 64_[+1]_48 chr3L:11773092-11773212 5.1e-05 64_[+1]_48 chr3L:2801581-2801701 5.1e-05 17_[+1]_95 chr2L:8327030-8327150 5.1e-05 112_[+1] chrX:5005671-5005791 5.1e-05 60_[+1]_52 chr3R:30248056-30248176 5.1e-05 44_[+1]_68 chr2L:4037093-4037213 5.1e-05 9_[+1]_103 chr3L:16155102-16155222 5.1e-05 36_[+1]_76 chrX:3151263-3151383 5.1e-05 107_[+1]_5 chr3L:10712113-10712233 5.1e-05 93_[+1]_19 chr3R:26894450-26894570 5.1e-05 112_[+1] chr3L:20926946-20927066 5.1e-05 44_[+1]_68 chr2R:8234295-8234415 5.1e-05 40_[+1]_72 chr2R:21570431-21570551 5.1e-05 54_[+1]_58 chr3L:16477304-16477424 5.1e-05 95_[+1]_17 chrM:17661-17781 5.1e-05 47_[+1]_65 chr3R:14398760-14398880 5.1e-05 15_[+1]_97 chr3R:16111040-16111160 5.1e-05 97_[+1]_15 chrM:18546-18666 5.1e-05 91_[+1]_21 chr3R:11449825-11449945 8.5e-05 78_[+1]_34 chr3L:17570642-17570762 8.5e-05 80_[+1]_32 chr2R:22740562-22740682 8.5e-05 62_[+1]_50 chr3R:7536465-7536585 8.5e-05 74_[+1]_38 chrX:18974691-18974811 8.5e-05 47_[+1]_65 chr3L:9063697-9063817 8.5e-05 77_[+1]_35 chr3L:7530595-7530715 8.5e-05 [+1]_112 chr2R:6867802-6867922 8.5e-05 42_[+1]_70 chrX:16334719-16334839 8.5e-05 24_[+1]_88 chrX:16072355-16072475 8.5e-05 9_[+1]_103 chr2R:23721828-23721948 0.00018 107_[+1]_5 chr3L:14202457-14202577 0.00018 86_[+1]_26 chrX:1826789-1826909 0.00018 17_[+1]_95 chr2R:6522709-6522829 0.00018 49_[+1]_63 chr3L:16895774-16895894 0.00018 66_[+1]_46 chr2R:6162682-6162802 0.00018 112_[+1] chrX:7339189-7339309 0.00018 8_[+1]_104 chr2L:3354454-3354574 0.00018 89_[+1]_23 chr3L:15648313-15648433 0.00018 51_[+1]_61 chr2R:14338367-14338487 0.00018 6_[+1]_106 chr3R:25634547-25634667 0.00018 44_[+1]_68 chr2R:14338566-14338686 0.00023 72_[+1]_40 chr2L:9187687-9187807 0.00023 3_[+1]_109 chr3L:4365318-4365438 0.00023 22_[+1]_90 chr3L:16984193-16984313 0.00023 68_[+1]_44 chr3L:4161013-4161133 0.00026 36_[+1]_76 chr3L:6831845-6831965 0.00026 47_[+1]_65 chr2R:24285995-24286115 0.00026 46_[+1]_66 chr3R:11982705-11982825 0.00031 91_[+1]_21 chr4:315394-315514 0.00031 13_[+1]_99 chr2L:3770603-3770723 0.00031 2_[+1]_110 chrX:17109771-17109891 0.00037 19_[+1]_93 chr3R:21007094-21007214 0.00037 49_[+1]_63 chr3L:8842495-8842615 0.00041 72_[+1]_40 chr2R:7614306-7614426 0.00041 22_[+1]_90 chr2R:9443950-9444070 0.00041 45_[+1]_67 chr3R:14736230-14736350 0.00044 97_[+1]_15 chr2R:8721773-8721893 0.00044 18_[+1]_94 chr3R:7978521-7978641 0.00044 6_[+1]_106 chr2R:7750448-7750568 0.00052 16_[+1]_96 chr3R:21851969-21852089 0.00052 68_[+1]_44 chr3R:18445239-18445359 0.00052 105_[+1]_7 chr3L:7792873-7792993 0.0006 44_[+1]_68 chr3R:11805618-11805738 0.0006 71_[+1]_41 chrX:11496542-11496662 0.0006 39_[+1]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=79 chr2L:6194245-6194365 ( 34) TTTTTTTT 1 chr3R:29282955-29283075 ( 77) TTTTTTTT 1 chr2L:4588730-4588850 ( 50) TTTTTTTT 1 chrX:10783584-10783704 ( 93) TTTTTTTT 1 chr3L:16194519-16194639 ( 45) TTTTTTTT 1 chr3L:15547531-15547651 ( 68) TTTTTTTT 1 chr3L:5852557-5852677 ( 48) TTTTTTTT 1 chr2L:21030387-21030507 ( 100) TTTTTTTT 1 chr3R:10599695-10599815 ( 82) TTTTTTTT 1 chr3R:4761517-4761637 ( 22) TTTTTTTT 1 chr3R:21954326-21954446 ( 10) TTTTTTTT 1 chr2R:13431934-13432054 ( 20) TTTTTTTT 1 chr3L:8369096-8369216 ( 33) TTTTTTTT 1 chr2R:10531563-10531683 ( 38) TTTTTTTT 1 chr3L:9097486-9097606 ( 23) TTTTTTTT 1 chrM:16006-16126 ( 65) TTTTTTTT 1 chr3L:11773092-11773212 ( 65) TTTTTTTT 1 chr3L:2801581-2801701 ( 18) TTTTTTTT 1 chr2L:8327030-8327150 ( 113) TTTTTTTT 1 chrX:5005671-5005791 ( 61) TTTTTTTT 1 chr3R:30248056-30248176 ( 45) TTTTTTTT 1 chr2L:4037093-4037213 ( 10) TTTTTTTT 1 chr3L:16155102-16155222 ( 37) TTTTTTTT 1 chrX:3151263-3151383 ( 108) TTTTTTTT 1 chr3L:10712113-10712233 ( 94) TTTTTTTT 1 chr3R:26894450-26894570 ( 113) TTTTTTTT 1 chr3L:20926946-20927066 ( 45) TTTTTTTT 1 chr2R:8234295-8234415 ( 41) TTTTTTTT 1 chr2R:21570431-21570551 ( 55) TTTTTTTT 1 chr3L:16477304-16477424 ( 96) TTTTTTTT 1 chrM:17661-17781 ( 48) TTTTTTTT 1 chr3R:14398760-14398880 ( 16) TTTTTTTT 1 chr3R:16111040-16111160 ( 98) TTTTTTTT 1 chrM:18546-18666 ( 92) TTTTTTTT 1 chr3R:11449825-11449945 ( 79) TTTGTTTT 1 chr3L:17570642-17570762 ( 81) TTTGTTTT 1 chr2R:22740562-22740682 ( 63) TTTGTTTT 1 chr3R:7536465-7536585 ( 75) TTTGTTTT 1 chrX:18974691-18974811 ( 48) TTTGTTTT 1 chr3L:9063697-9063817 ( 78) TTTGTTTT 1 chr3L:7530595-7530715 ( 1) TTTGTTTT 1 chr2R:6867802-6867922 ( 43) TTTGTTTT 1 chrX:16334719-16334839 ( 25) TTTGTTTT 1 chrX:16072355-16072475 ( 10) TTTGTTTT 1 chr2R:23721828-23721948 ( 108) TTTATTTT 1 chr3L:14202457-14202577 ( 87) TTTATTTT 1 chrX:1826789-1826909 ( 18) TTTTTTTG 1 chr2R:6522709-6522829 ( 50) TTTATTTT 1 chr3L:16895774-16895894 ( 67) TTTATTTT 1 chr2R:6162682-6162802 ( 113) TTTTTTTG 1 chrX:7339189-7339309 ( 9) TTTATTTT 1 chr2L:3354454-3354574 ( 90) TTTTTTTG 1 chr3L:15648313-15648433 ( 52) TTTATTTT 1 chr2R:14338367-14338487 ( 7) TTTATTTT 1 chr3R:25634547-25634667 ( 45) TTTATTTT 1 chr2R:14338566-14338686 ( 73) TTTGTTTG 1 chr2L:9187687-9187807 ( 4) TTCTTTTT 1 chr3L:4365318-4365438 ( 23) TTTGTTTG 1 chr3L:16984193-16984313 ( 69) TTTGTTTG 1 chr3L:4161013-4161133 ( 37) TTCGTTTT 1 chr3L:6831845-6831965 ( 48) TTCGTTTT 1 chr2R:24285995-24286115 ( 47) TTCGTTTT 1 chr3R:11982705-11982825 ( 92) ATTTTTTT 1 chr4:315394-315514 ( 14) ATTTTTTT 1 chr2L:3770603-3770723 ( 3) ATTTTTTT 1 chrX:17109771-17109891 ( 20) TTTTATTT 1 chr3R:21007094-21007214 ( 50) TTTTATTT 1 chr3L:8842495-8842615 ( 73) ATTGTTTT 1 chr2R:7614306-7614426 ( 23) ATTGTTTT 1 chr2R:9443950-9444070 ( 46) ATTGTTTT 1 chr3R:14736230-14736350 ( 98) TTTGATTT 1 chr2R:8721773-8721893 ( 19) TTTGATTT 1 chr3R:7978521-7978641 ( 7) TTTGATTT 1 chr2R:7750448-7750568 ( 17) TTTATTTG 1 chr3R:21851969-21852089 ( 69) TTTTTCTT 1 chr3R:18445239-18445359 ( 106) TTTTTCTT 1 chr3L:7792873-7792993 ( 45) TTCATTTT 1 chr3R:11805618-11805738 ( 72) TTCTTTTG 1 chrX:11496542-11496662 ( 40) TTCTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.94656 E= 5.8e-020 -209 -1295 -1295 167 -1295 -1295 -1295 178 -1295 -113 -1295 165 -136 -1295 55 103 -236 -1295 -1295 169 -1295 -294 -1295 174 -1295 -1295 -1295 178 -1295 -1295 -74 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 5.8e-020 0.075949 0.000000 0.000000 0.924051 0.000000 0.000000 0.000000 1.000000 0.000000 0.088608 0.000000 0.911392 0.126582 0.000000 0.278481 0.594937 0.063291 0.000000 0.000000 0.936709 0.000000 0.025316 0.000000 0.974684 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.113924 0.886076 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTT[TG]TTTT -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 103 llr = 734 E-value = 1.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9aa68aaa pos.-specific C 1::21::: probability G ::::1::: matrix T :::2:::: bits 2.4 2.2 1.9 1.7 ** Relative 1.4 *** *** Entropy 1.2 *** *** (10.3 bits) 1.0 *** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14220791-14220911 49 1.21e-04 TGGCcaaaaa aaaaaaaa aaaacacaca chr2L:20773797-20773917 16 1.21e-04 CCACaaaaaa aaaaaaaa aaaGAGTTCT chr2L:4588730-4588850 20 1.21e-04 AAAACGGAAA AAAAAAAA ATAACACTAA chr3L:4161013-4161133 59 1.21e-04 CAGCCGGGGC AAAAAAAA AAAAAAGGGT chr3L:6831845-6831965 112 1.21e-04 CTGTGGCTGG AAAAAAAA G chrX:3412858-3412978 104 1.21e-04 aaaaaaaaaa aaaaaaaa GGGTTAAGA chr2R:18312383-18312503 40 1.21e-04 GGAAAGACAA AAAAAAAA AAGAAGAAAA chr3L:11428487-11428607 113 1.21e-04 CAAAAAATTG AAAAAAAA chrX:18926246-18926366 67 1.21e-04 aaaaaaaaaa aaaaaaaa ccgaaacaca chr3R:20765384-20765504 113 1.21e-04 AGCaaaaagc aaaaaaaa chr2L:9451625-9451745 63 1.21e-04 AACACGAACG AAAAAAAA AACTGGTAAC chr2L:21030387-21030507 25 1.21e-04 AAAAAACCGC AAAAAAAA GTTTTTTCTC chr3R:17379995-17380115 61 1.21e-04 ACAAAAGTAA AAAAAAAA TATATATATT chr3L:15761743-15761863 17 1.21e-04 TTTCCATACA AAAAAAAA TACACAAAGC chr2L:19321958-19322078 111 1.21e-04 CAGTGAGCCA AAAAAAAA AG chrX:7339189-7339309 98 1.21e-04 TGTTTACGAA AAAAAAAA CACCGAAAAA chr2L:9187687-9187807 61 1.21e-04 GGCGGGCaaa aaaaaaaa aaatacaaaa chrX:17109771-17109891 93 1.21e-04 GTCTGAGCTC AAAAAAAA AAAAAGGCAC chrM:16006-16126 73 1.21e-04 ATTTTTTTTT AAAAAAAA ATTATTTATT chr2L:7005598-7005718 74 1.21e-04 TCCAAGTTAA AAAAAAAA CAGGTTACGA chr2R:22150660-22150780 25 1.21e-04 AATTCAACCA AAAAAAAA GCACCAACAC chr3R:14024090-14024210 61 1.21e-04 GAAATTATCA AAAAAAAA GTCAAACAGC chr2L:3307328-3307448 39 1.21e-04 TAGaaacaaa aaaaaaaa aaaaacaaaa chr2L:9126173-9126293 43 1.21e-04 CATTTCCCTA AAAAAAAA ATACGCAGTG chr3R:17825553-17825673 51 1.21e-04 ACGAGCAAAA AAAAAAAA CTACAAACAA chr3R:20265959-20266079 33 1.21e-04 GTCGCCCAAA AAAAAAAA AATAAAGCAA chr3L:10343470-10343590 36 1.21e-04 CTGAAACATG AAAAAAAA AAAATTCAAA chr3R:30314530-30314650 15 1.21e-04 aaacaaaaag aaaaaaaa aGCACACATG chr3R:27199008-27199128 53 1.21e-04 CCCTaaaaaa aaaaaaaa taaaacacaa chrX:3139186-3139306 19 1.21e-04 GTAAACTTCA AAAAAAAA AATAAAAAAG chr3R:7523805-7523925 47 1.21e-04 AATATTATAG AAAAAAAA TATACTACAT chrX:12732606-12732726 29 1.21e-04 aaaaaaatat aaaaaaaa TTGTGACTGA chr2R:12382822-12382942 38 1.21e-04 taaacaaagc aaaaaaaa agcaaaaaaa chr2L:11965746-11965866 38 1.21e-04 TGCAAAAGCC AAAAAAAA AAAATGAATA chrM:17661-17781 57 1.21e-04 TTTTTTTTTA AAAAAAAA CTATATACTA chr2R:8737980-8738100 69 1.21e-04 GGGGGTTAAA AAAAAAAA AATTGAAAAT chr2R:15739043-15739163 39 1.21e-04 CAAAAGGTGT AAAAAAAA GCGAAAGTTT chr3R:14443517-14443637 110 1.21e-04 AAATAGAAGA AAAAAAAA ACG chrX:5092057-5092177 93 1.21e-04 CTGCAGACTC AAAAAAAA ACTCTGGACG chrM:18546-18666 79 1.21e-04 AAAATTTTTT AAAAAAAA ATAATTTTTT chr2R:22568981-22569101 47 1.21e-04 aaaaaaaaag aaaaaaaa aTCAGACGAA chr2L:6194245-6194365 4 1.94e-04 GAT AAACAAAA TATATTTGGC chrX:1271254-1271374 21 1.94e-04 ACGaaacgaa aaacaaaa ttaacaaaaa chr3L:3924011-3924131 68 1.94e-04 GCAGTGGTAA AAACAAAA AAGTTTAATT chr3L:17925307-17925427 111 1.94e-04 TGAAATGGCA AAACAAAA AT chr3R:5307570-5307690 48 1.94e-04 GTCTTATCaa aaacaaaa aagaaatata chr2L:13069900-13070020 19 1.94e-04 gcgacaagtc aaacaaaa AGTTGAGCAC chrX:17732208-17732328 43 1.94e-04 aaaaaacaaa aaacaaaa agccccaaac chr3L:13952841-13952961 58 1.94e-04 AATATTTTGT AAACAAAA ACACTCCCTC chr2L:18559288-18559408 88 1.94e-04 accacgggga aaacaaaa tgaacaaaaa chr2L:2804009-2804129 101 1.94e-04 ATCTCAAGGT AAACAAAA CTCGGAACGG chrX:16334719-16334839 104 1.94e-04 GTATGCATAC AAACAAAA AAGCGACGC chr2R:14315660-14315780 71 1.94e-04 CCAGAAAATG AAACAAAA GTGAAGGCTC chr2R:21378273-21378393 102 1.94e-04 CATTATAATA AAACAAAA TCGCACTTGG chr3L:3249378-3249498 28 1.94e-04 TTAAAAAGTC AAACAAAA TAATAAAATG chr3L:17921662-17921782 70 3.03e-04 AACTCAACTG AAATAAAA TCAAACTGAT chr2R:9028922-9029042 4 3.03e-04 AAA AAATAAAA AGACAGCGTC chr2R:7750448-7750568 58 3.03e-04 AGTACAATGA AAATAAAA CGAGATCGTG chr2L:20316696-20316816 50 3.03e-04 TTTTGTAAGT AAATAAAA CACCTATATT chr3R:10599695-10599815 52 3.03e-04 ACCAAATTCC AAATAAAA AGGTAAAGGT chrM:17226-17346 79 3.03e-04 ATTAATAATT AAATAAAA TCTATTCATT chrM:19285-19405 82 3.03e-04 ATATATAGAA AAATAAAA TTATTTAAAT chr2L:14010529-14010649 13 3.03e-04 AAAGAGTTAC AAATAAAA AAGCGAGTTC chr2R:9443950-9444070 7 3.03e-04 TTAGCC AAATAAAA TGCATGAAAC chr3L:19941092-19941212 67 3.03e-04 GAATAAGTGA AAATAAAA ACCAAATCAA chr3R:30248056-30248176 15 3.03e-04 GCCGTCTAGA AAATAAAA GGTTCTTAAC chr3R:19312463-19312583 16 3.03e-04 AAGTAAGAAA AAATAAAA GAAGGCAGCA chr3L:21385321-21385441 68 3.03e-04 aataaaaatg aaataaaa tggcataaaa chr2L:7970323-7970443 60 3.03e-04 TCAAATGGCA AAATAAAA TATTTTTTAA chr3R:18472815-18472935 84 3.03e-04 aacaataaac aaataaaa aaacaaatac chr2L:20887456-20887576 92 3.75e-04 GTAAATATAT AAAAGAAA TTTATGCAGC chr3R:7472059-7472179 113 3.75e-04 TATAAAATTA AAAAGAAA chrX:7694333-7694453 86 3.75e-04 AAACAGCGAA AAAAGAAA AGCAGCAGCA chr3R:7322670-7322790 111 3.75e-04 TGAAATGaaa aaaagaaa aa chr3R:26894450-26894570 30 3.75e-04 CGAAAATCGA AAAAGAAA ATAACGAACC chr3R:7475235-7475355 55 4.18e-04 GGGCTCGAGC AAACGAAA GATTCTTCAA chrX:10113694-10113814 107 4.18e-04 AAAGGCAACG AAACGAAA GAAAAA chrX:3772869-3772989 50 4.18e-04 ATAATAACTG aaacgaaa aacacgcgca chr2L:2009327-2009447 67 5.63e-04 GGTGTTTGAA CAAAAAAA CGTCGATTTT chr2R:13431934-13432054 11 5.63e-04 TAAGTGTTAG CAAAAAAA TTTTTTTTTA chr3L:9063697-9063817 63 5.63e-04 ATTTTTTTGC CAAAAAAA TGCGAATTTT chr3L:16167901-16168021 27 5.63e-04 AGAAAAGTAA AAAACAAA GGCAAATGGC chr3R:7978521-7978641 94 5.63e-04 GAGCCGGGCC CAAAAAAA CTACCTGTCT chr2L:5298835-5298955 53 5.63e-04 GTAAATGATG AAAACAAA CTCATAAATG chr3L:15547531-15547651 54 6.27e-04 AAATCAAATC AAATGAAA TCAGTTTTTT chr3R:19309244-19309364 70 6.27e-04 GAAACACACA AAATGAAA TAATCCCATG chr3L:20926946-20927066 104 6.27e-04 AATTGACTCG AAATGAAA ACCGAAAAA chrM:16653-16773 53 6.27e-04 ATATATAAAA AAATGAAA ATAAATTTAT chr3L:18019090-18019210 29 7.14e-04 GCAAAACCGA AAACCAAA CTTTTTTGGC chr2L:5145090-5145210 72 7.14e-04 GCACCATAAA AAACCAAA GTGCAATCGT chr2R:13602306-13602426 68 8.45e-04 ACGCCCTGAT AAATCAAA ACATAAACCT chr3L:7530595-7530715 44 8.45e-04 ATTTTTTTGG CAATAAAA CGAAGCGGTG chr3L:1379834-1379954 23 8.45e-04 ATAATCTCCA AAATCAAA CGAACGAGCA chr2R:12368431-12368551 96 8.45e-04 ATCCGATATC CAATAAAA ATCGTTTTCT chr3R:20260361-20260481 36 8.45e-04 GGCAATTTTG CAATAAAA TTTATTACTT chr3R:21977151-21977271 70 9.91e-04 GAAATTATTG AACAAAAA ATGTATATGT chrX:19149409-19149529 66 9.91e-04 CAAAGTTTAT AACAAAAA TCAAAAAATT chr2L:13434985-13435105 3 9.91e-04 AT ACAAAAAA TATATAAACA chrX:11496542-11496662 51 9.91e-04 TCTTTTGGCT ACAAAAAA GCTTTAATTT chr3R:8876167-8876287 93 1.19e-03 AATCTGCAGC AAAGAAAA GGCTGCCACG chr3R:7541420-7541540 3 1.19e-03 CA ACACAAAA AGCTATATTC chr2R:10778299-10778419 35 1.32e-03 agttgaactg aactaaaA CGGAGGAGCT chr3R:19071362-19071482 38 1.46e-03 aaagaaacat aaaaacaa cacacaataa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14220791-14220911 0.00012 48_[+2]_64 chr2L:20773797-20773917 0.00012 15_[+2]_97 chr2L:4588730-4588850 0.00012 19_[+2]_93 chr3L:4161013-4161133 0.00012 58_[+2]_54 chr3L:6831845-6831965 0.00012 111_[+2]_1 chrX:3412858-3412978 0.00012 103_[+2]_9 chr2R:18312383-18312503 0.00012 39_[+2]_73 chr3L:11428487-11428607 0.00012 112_[+2] chrX:18926246-18926366 0.00012 66_[+2]_46 chr3R:20765384-20765504 0.00012 112_[+2] chr2L:9451625-9451745 0.00012 62_[+2]_50 chr2L:21030387-21030507 0.00012 24_[+2]_88 chr3R:17379995-17380115 0.00012 60_[+2]_52 chr3L:15761743-15761863 0.00012 16_[+2]_96 chr2L:19321958-19322078 0.00012 110_[+2]_2 chrX:7339189-7339309 0.00012 97_[+2]_15 chr2L:9187687-9187807 0.00012 60_[+2]_52 chrX:17109771-17109891 0.00012 92_[+2]_20 chrM:16006-16126 0.00012 72_[+2]_40 chr2L:7005598-7005718 0.00012 73_[+2]_39 chr2R:22150660-22150780 0.00012 24_[+2]_88 chr3R:14024090-14024210 0.00012 60_[+2]_52 chr2L:3307328-3307448 0.00012 38_[+2]_74 chr2L:9126173-9126293 0.00012 42_[+2]_70 chr3R:17825553-17825673 0.00012 50_[+2]_62 chr3R:20265959-20266079 0.00012 32_[+2]_80 chr3L:10343470-10343590 0.00012 35_[+2]_77 chr3R:30314530-30314650 0.00012 14_[+2]_98 chr3R:27199008-27199128 0.00012 52_[+2]_60 chrX:3139186-3139306 0.00012 18_[+2]_94 chr3R:7523805-7523925 0.00012 46_[+2]_66 chrX:12732606-12732726 0.00012 28_[+2]_84 chr2R:12382822-12382942 0.00012 37_[+2]_75 chr2L:11965746-11965866 0.00012 37_[+2]_75 chrM:17661-17781 0.00012 56_[+2]_56 chr2R:8737980-8738100 0.00012 68_[+2]_44 chr2R:15739043-15739163 0.00012 38_[+2]_74 chr3R:14443517-14443637 0.00012 109_[+2]_3 chrX:5092057-5092177 0.00012 92_[+2]_20 chrM:18546-18666 0.00012 78_[+2]_34 chr2R:22568981-22569101 0.00012 46_[+2]_66 chr2L:6194245-6194365 0.00019 3_[+2]_109 chrX:1271254-1271374 0.00019 20_[+2]_92 chr3L:3924011-3924131 0.00019 67_[+2]_45 chr3L:17925307-17925427 0.00019 110_[+2]_2 chr3R:5307570-5307690 0.00019 47_[+2]_65 chr2L:13069900-13070020 0.00019 18_[+2]_94 chrX:17732208-17732328 0.00019 42_[+2]_70 chr3L:13952841-13952961 0.00019 57_[+2]_55 chr2L:18559288-18559408 0.00019 87_[+2]_25 chr2L:2804009-2804129 0.00019 100_[+2]_12 chrX:16334719-16334839 0.00019 103_[+2]_9 chr2R:14315660-14315780 0.00019 70_[+2]_42 chr2R:21378273-21378393 0.00019 101_[+2]_11 chr3L:3249378-3249498 0.00019 27_[+2]_85 chr3L:17921662-17921782 0.0003 69_[+2]_43 chr2R:9028922-9029042 0.0003 3_[+2]_109 chr2R:7750448-7750568 0.0003 57_[+2]_55 chr2L:20316696-20316816 0.0003 49_[+2]_63 chr3R:10599695-10599815 0.0003 51_[+2]_61 chrM:17226-17346 0.0003 78_[+2]_34 chrM:19285-19405 0.0003 81_[+2]_31 chr2L:14010529-14010649 0.0003 12_[+2]_100 chr2R:9443950-9444070 0.0003 6_[+2]_106 chr3L:19941092-19941212 0.0003 66_[+2]_46 chr3R:30248056-30248176 0.0003 14_[+2]_98 chr3R:19312463-19312583 0.0003 15_[+2]_97 chr3L:21385321-21385441 0.0003 67_[+2]_45 chr2L:7970323-7970443 0.0003 59_[+2]_53 chr3R:18472815-18472935 0.0003 83_[+2]_29 chr2L:20887456-20887576 0.00037 91_[+2]_21 chr3R:7472059-7472179 0.00037 112_[+2] chrX:7694333-7694453 0.00037 85_[+2]_27 chr3R:7322670-7322790 0.00037 110_[+2]_2 chr3R:26894450-26894570 0.00037 29_[+2]_83 chr3R:7475235-7475355 0.00042 54_[+2]_58 chrX:10113694-10113814 0.00042 106_[+2]_6 chrX:3772869-3772989 0.00042 49_[+2]_63 chr2L:2009327-2009447 0.00056 66_[+2]_46 chr2R:13431934-13432054 0.00056 10_[+2]_102 chr3L:9063697-9063817 0.00056 62_[+2]_50 chr3L:16167901-16168021 0.00056 26_[+2]_86 chr3R:7978521-7978641 0.00056 93_[+2]_19 chr2L:5298835-5298955 0.00056 52_[+2]_60 chr3L:15547531-15547651 0.00063 53_[+2]_59 chr3R:19309244-19309364 0.00063 69_[+2]_43 chr3L:20926946-20927066 0.00063 103_[+2]_9 chrM:16653-16773 0.00063 52_[+2]_60 chr3L:18019090-18019210 0.00071 28_[+2]_84 chr2L:5145090-5145210 0.00071 71_[+2]_41 chr2R:13602306-13602426 0.00085 67_[+2]_45 chr3L:7530595-7530715 0.00085 43_[+2]_69 chr3L:1379834-1379954 0.00085 22_[+2]_90 chr2R:12368431-12368551 0.00085 95_[+2]_17 chr3R:20260361-20260481 0.00085 35_[+2]_77 chr3R:21977151-21977271 0.00099 69_[+2]_43 chrX:19149409-19149529 0.00099 65_[+2]_47 chr2L:13434985-13435105 0.00099 2_[+2]_110 chrX:11496542-11496662 0.00099 50_[+2]_62 chr3R:8876167-8876287 0.0012 92_[+2]_20 chr3R:7541420-7541540 0.0012 2_[+2]_110 chr2R:10778299-10778419 0.0013 34_[+2]_78 chr3R:19071362-19071482 0.0015 37_[+2]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=103 chr2R:14220791-14220911 ( 49) AAAAAAAA 1 chr2L:20773797-20773917 ( 16) AAAAAAAA 1 chr2L:4588730-4588850 ( 20) AAAAAAAA 1 chr3L:4161013-4161133 ( 59) AAAAAAAA 1 chr3L:6831845-6831965 ( 112) AAAAAAAA 1 chrX:3412858-3412978 ( 104) AAAAAAAA 1 chr2R:18312383-18312503 ( 40) AAAAAAAA 1 chr3L:11428487-11428607 ( 113) AAAAAAAA 1 chrX:18926246-18926366 ( 67) AAAAAAAA 1 chr3R:20765384-20765504 ( 113) AAAAAAAA 1 chr2L:9451625-9451745 ( 63) AAAAAAAA 1 chr2L:21030387-21030507 ( 25) AAAAAAAA 1 chr3R:17379995-17380115 ( 61) AAAAAAAA 1 chr3L:15761743-15761863 ( 17) AAAAAAAA 1 chr2L:19321958-19322078 ( 111) AAAAAAAA 1 chrX:7339189-7339309 ( 98) AAAAAAAA 1 chr2L:9187687-9187807 ( 61) AAAAAAAA 1 chrX:17109771-17109891 ( 93) AAAAAAAA 1 chrM:16006-16126 ( 73) AAAAAAAA 1 chr2L:7005598-7005718 ( 74) AAAAAAAA 1 chr2R:22150660-22150780 ( 25) AAAAAAAA 1 chr3R:14024090-14024210 ( 61) AAAAAAAA 1 chr2L:3307328-3307448 ( 39) AAAAAAAA 1 chr2L:9126173-9126293 ( 43) AAAAAAAA 1 chr3R:17825553-17825673 ( 51) AAAAAAAA 1 chr3R:20265959-20266079 ( 33) AAAAAAAA 1 chr3L:10343470-10343590 ( 36) AAAAAAAA 1 chr3R:30314530-30314650 ( 15) AAAAAAAA 1 chr3R:27199008-27199128 ( 53) AAAAAAAA 1 chrX:3139186-3139306 ( 19) AAAAAAAA 1 chr3R:7523805-7523925 ( 47) AAAAAAAA 1 chrX:12732606-12732726 ( 29) AAAAAAAA 1 chr2R:12382822-12382942 ( 38) AAAAAAAA 1 chr2L:11965746-11965866 ( 38) AAAAAAAA 1 chrM:17661-17781 ( 57) AAAAAAAA 1 chr2R:8737980-8738100 ( 69) AAAAAAAA 1 chr2R:15739043-15739163 ( 39) AAAAAAAA 1 chr3R:14443517-14443637 ( 110) AAAAAAAA 1 chrX:5092057-5092177 ( 93) AAAAAAAA 1 chrM:18546-18666 ( 79) AAAAAAAA 1 chr2R:22568981-22569101 ( 47) AAAAAAAA 1 chr2L:6194245-6194365 ( 4) AAACAAAA 1 chrX:1271254-1271374 ( 21) AAACAAAA 1 chr3L:3924011-3924131 ( 68) AAACAAAA 1 chr3L:17925307-17925427 ( 111) AAACAAAA 1 chr3R:5307570-5307690 ( 48) AAACAAAA 1 chr2L:13069900-13070020 ( 19) AAACAAAA 1 chrX:17732208-17732328 ( 43) AAACAAAA 1 chr3L:13952841-13952961 ( 58) AAACAAAA 1 chr2L:18559288-18559408 ( 88) AAACAAAA 1 chr2L:2804009-2804129 ( 101) AAACAAAA 1 chrX:16334719-16334839 ( 104) AAACAAAA 1 chr2R:14315660-14315780 ( 71) AAACAAAA 1 chr2R:21378273-21378393 ( 102) AAACAAAA 1 chr3L:3249378-3249498 ( 28) AAACAAAA 1 chr3L:17921662-17921782 ( 70) AAATAAAA 1 chr2R:9028922-9029042 ( 4) AAATAAAA 1 chr2R:7750448-7750568 ( 58) AAATAAAA 1 chr2L:20316696-20316816 ( 50) AAATAAAA 1 chr3R:10599695-10599815 ( 52) AAATAAAA 1 chrM:17226-17346 ( 79) AAATAAAA 1 chrM:19285-19405 ( 82) AAATAAAA 1 chr2L:14010529-14010649 ( 13) AAATAAAA 1 chr2R:9443950-9444070 ( 7) AAATAAAA 1 chr3L:19941092-19941212 ( 67) AAATAAAA 1 chr3R:30248056-30248176 ( 15) AAATAAAA 1 chr3R:19312463-19312583 ( 16) AAATAAAA 1 chr3L:21385321-21385441 ( 68) AAATAAAA 1 chr2L:7970323-7970443 ( 60) AAATAAAA 1 chr3R:18472815-18472935 ( 84) AAATAAAA 1 chr2L:20887456-20887576 ( 92) AAAAGAAA 1 chr3R:7472059-7472179 ( 113) AAAAGAAA 1 chrX:7694333-7694453 ( 86) AAAAGAAA 1 chr3R:7322670-7322790 ( 111) AAAAGAAA 1 chr3R:26894450-26894570 ( 30) AAAAGAAA 1 chr3R:7475235-7475355 ( 55) AAACGAAA 1 chrX:10113694-10113814 ( 107) AAACGAAA 1 chrX:3772869-3772989 ( 50) AAACGAAA 1 chr2L:2009327-2009447 ( 67) CAAAAAAA 1 chr2R:13431934-13432054 ( 11) CAAAAAAA 1 chr3L:9063697-9063817 ( 63) CAAAAAAA 1 chr3L:16167901-16168021 ( 27) AAAACAAA 1 chr3R:7978521-7978641 ( 94) CAAAAAAA 1 chr2L:5298835-5298955 ( 53) AAAACAAA 1 chr3L:15547531-15547651 ( 54) AAATGAAA 1 chr3R:19309244-19309364 ( 70) AAATGAAA 1 chr3L:20926946-20927066 ( 104) AAATGAAA 1 chrM:16653-16773 ( 53) AAATGAAA 1 chr3L:18019090-18019210 ( 29) AAACCAAA 1 chr2L:5145090-5145210 ( 72) AAACCAAA 1 chr2R:13602306-13602426 ( 68) AAATCAAA 1 chr3L:7530595-7530715 ( 44) CAATAAAA 1 chr3L:1379834-1379954 ( 23) AAATCAAA 1 chr2R:12368431-12368551 ( 96) CAATAAAA 1 chr3R:20260361-20260481 ( 36) CAATAAAA 1 chr3R:21977151-21977271 ( 70) AACAAAAA 1 chrX:19149409-19149529 ( 66) AACAAAAA 1 chr2L:13434985-13435105 ( 3) ACAAAAAA 1 chrX:11496542-11496662 ( 51) ACAAAAAA 1 chr3R:8876167-8876287 ( 93) AAAGAAAA 1 chr3R:7541420-7541540 ( 3) ACACAAAA 1 chr2R:10778299-10778419 ( 35) AACTAAAA 1 chr3R:19071362-19071482 ( 38) AAAAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.25378 E= 1.1e-012 152 -151 -1333 -1333 158 -273 -1333 -1333 158 -273 -1333 -1333 77 0 -429 -26 135 -173 -71 -1333 161 -432 -1333 -1333 162 -1333 -1333 -1333 162 -1333 -1333 -1333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 1.1e-012 0.932039 0.067961 0.000000 0.000000 0.970874 0.029126 0.000000 0.000000 0.970874 0.029126 0.000000 0.000000 0.553398 0.194175 0.009709 0.242718 0.825243 0.058252 0.116505 0.000000 0.990291 0.009709 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAA[AT]AAAA -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TTWTGGCC MEME-3 width = 8 sites = 44 llr = 377 E-value = 6.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C ::1:3:77 probability G ::::7a33 matrix T aa4a1::: bits 2.4 * 2.2 * 1.9 * 1.7 ** * * Relative 1.4 ** * *** Entropy 1.2 ** ***** (12.4 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTATGGCC consensus T C GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10778299-10778419 101 1.10e-05 TACTATAATA TTATGGCC AAGTGAGTGG chr3R:17132299-17132419 45 1.10e-05 CCAGCAATCT TTATGGCC ATTCGCAGTC chrX:10113694-10113814 28 1.10e-05 TTTTCGGTTG TTATGGCC ACTTGCAACA chr3L:3776892-3777012 102 1.10e-05 TTCGGTTCGA TTATGGCC CCATAAATGC chr2R:14220791-14220911 36 2.08e-05 CAAAAACGGG TTTTGGCc aaaaaaaaaa chr2R:22740562-22740682 16 2.08e-05 ACGTCATCGT TTTTGGCC CGATCTCGGC chrX:18926246-18926366 16 2.08e-05 CCCCCGCCCA TTTTGGCC AAGTTAACTG chr2R:24336638-24336758 92 2.08e-05 TAATTGGGAG TTTTGGCC AATGATTTCT chr3L:11773092-11773212 108 2.08e-05 GTATCATTTT TTTTGGCC AGTGC chr3R:12743768-12743888 92 2.08e-05 TAAGCATTAC TTTTGGCC TGCAAACACA chr3R:26894450-26894570 57 2.08e-05 CCAAAACTTG TTTTGGCC ACAGAAACTG chr3L:10343470-10343590 112 2.08e-05 ACCTTTACTG TTTTGGCC C chr3L:17921662-17921782 87 5.35e-05 ATCAAACTGA TTATGGGC CAATCTGACA chr2L:12495341-12495461 45 5.35e-05 AAGGAAACTC TTATCGCC GAGCTGATAA chr2R:7614306-7614426 101 5.35e-05 TCCTTTCGAA TTATCGCC GCCGAGTCTA chr3L:4365318-4365438 33 5.35e-05 TTTGTTTGGT TTATGGCG CCCAATCGGA chr3R:21851969-21852089 82 5.35e-05 TTCTTCTTTC TTATCGCC CTGGAATTAT chr3R:19925722-19925842 60 5.35e-05 TTACTTTACG TTATCGCC GTTTGCCATT chr2R:12368431-12368551 71 5.35e-05 CGTGCCTATC TTATCGCC ATTTACGATC chr2R:21570431-21570551 87 5.35e-05 CAGTCTTCGT TTATGGCG CACAATTTCT chr2R:12263871-12263991 91 5.35e-05 ATTCTTTGGC TTATCGCC GTAGAGCGAG chr3R:23715007-23715127 82 5.35e-05 ATAAGGAAAT TTATGGGC CAACTTAGCG chr3R:29282955-29283075 5 8.29e-05 GAAA TTTTGGCG CCAAAATGCA chrX:17109771-17109891 47 8.29e-05 TCGTTTCGTT TTTTGGGC TGCAAAATTT chr3L:1379834-1379954 77 8.29e-05 TGAAGTTGGC TTTTGGCG CGCCACGTAT chr3R:20260361-20260481 105 8.29e-05 GTGCTACGCT TTTTGGCG TCTAATGA chr3R:16111040-16111160 107 8.29e-05 tttttttttt ttttGGGC TGACAA chr3R:5813349-5813469 13 8.95e-05 TGCACTGGGT TTCTGGCC AGCAGGGGGC chr3L:16477304-16477424 113 8.95e-05 TGCTGCGGCT TTCTGGCC chr3R:14398760-14398880 49 8.95e-05 TCATAAATTC TTCTGGCC TGCGTGTCCT chr3L:14619123-14619243 98 1.22e-04 GAACAAAGTG TTATCGCG TGTTGCCAAT chr3R:21180132-21180252 61 1.22e-04 CACTTGAGGC TTATCGGC GGCAAGAACT chrX:16703929-16704049 43 1.22e-04 CGACTTGAAT TTATGGGG GTAACAATCG chr2L:13434985-13435105 25 1.22e-04 TAAACACTTC TTATCGGC GTCTACGAAA chr2L:669896-670016 21 1.22e-04 CAGCATATAT TTATGGGG ATCGAAGATC chr2R:14338367-14338487 24 1.22e-04 TGGGTGATTT TTATGGGG CATAATCCGT chrX:12732606-12732726 70 1.22e-04 CAGAAGCGCA TTATCGCG TCTGCGATTA chr2L:634934-635054 93 1.51e-04 TGAGCTTGTG TTTTGGGG CAtttctgtt chr3R:23496154-23496274 67 1.51e-04 CACTGGCCAC TTTTCGGC CATTGTCAGC chr2R:15739043-15739163 70 1.51e-04 AGCCTCAGCT TTTTGGGG GATAAGGAGG chr3R:4761517-4761637 82 1.68e-04 ACCGTCAAGG TTATTGCC GATTGTCTGT chr3L:2801581-2801701 65 1.68e-04 TTTGTTTTAA TTATTGCC AGGCATGCCA chr3L:16155102-16155222 52 2.03e-04 TTTTCTTCGA TTTTTGCC ATATTTAGCT chr3L:488217-488337 14 2.03e-04 CTAAAACACG TTTTTGCC CAACTTAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10778299-10778419 1.1e-05 100_[+3]_12 chr3R:17132299-17132419 1.1e-05 44_[+3]_68 chrX:10113694-10113814 1.1e-05 27_[+3]_85 chr3L:3776892-3777012 1.1e-05 101_[+3]_11 chr2R:14220791-14220911 2.1e-05 35_[+3]_77 chr2R:22740562-22740682 2.1e-05 15_[+3]_97 chrX:18926246-18926366 2.1e-05 15_[+3]_97 chr2R:24336638-24336758 2.1e-05 91_[+3]_21 chr3L:11773092-11773212 2.1e-05 107_[+3]_5 chr3R:12743768-12743888 2.1e-05 91_[+3]_21 chr3R:26894450-26894570 2.1e-05 56_[+3]_56 chr3L:10343470-10343590 2.1e-05 111_[+3]_1 chr3L:17921662-17921782 5.4e-05 86_[+3]_26 chr2L:12495341-12495461 5.4e-05 44_[+3]_68 chr2R:7614306-7614426 5.4e-05 100_[+3]_12 chr3L:4365318-4365438 5.4e-05 32_[+3]_80 chr3R:21851969-21852089 5.4e-05 81_[+3]_31 chr3R:19925722-19925842 5.4e-05 59_[+3]_53 chr2R:12368431-12368551 5.4e-05 70_[+3]_42 chr2R:21570431-21570551 5.4e-05 86_[+3]_26 chr2R:12263871-12263991 5.4e-05 90_[+3]_22 chr3R:23715007-23715127 5.4e-05 81_[+3]_31 chr3R:29282955-29283075 8.3e-05 4_[+3]_108 chrX:17109771-17109891 8.3e-05 46_[+3]_66 chr3L:1379834-1379954 8.3e-05 76_[+3]_36 chr3R:20260361-20260481 8.3e-05 104_[+3]_8 chr3R:16111040-16111160 8.3e-05 106_[+3]_6 chr3R:5813349-5813469 8.9e-05 12_[+3]_100 chr3L:16477304-16477424 8.9e-05 112_[+3] chr3R:14398760-14398880 8.9e-05 48_[+3]_64 chr3L:14619123-14619243 0.00012 97_[+3]_15 chr3R:21180132-21180252 0.00012 60_[+3]_52 chrX:16703929-16704049 0.00012 42_[+3]_70 chr2L:13434985-13435105 0.00012 24_[+3]_88 chr2L:669896-670016 0.00012 20_[+3]_92 chr2R:14338367-14338487 0.00012 23_[+3]_89 chrX:12732606-12732726 0.00012 69_[+3]_43 chr2L:634934-635054 0.00015 92_[+3]_20 chr3R:23496154-23496274 0.00015 66_[+3]_46 chr2R:15739043-15739163 0.00015 69_[+3]_43 chr3R:4761517-4761637 0.00017 81_[+3]_31 chr3L:2801581-2801701 0.00017 64_[+3]_48 chr3L:16155102-16155222 0.0002 51_[+3]_61 chr3L:488217-488337 0.0002 13_[+3]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTWTGGCC width=8 seqs=44 chr2R:10778299-10778419 ( 101) TTATGGCC 1 chr3R:17132299-17132419 ( 45) TTATGGCC 1 chrX:10113694-10113814 ( 28) TTATGGCC 1 chr3L:3776892-3777012 ( 102) TTATGGCC 1 chr2R:14220791-14220911 ( 36) TTTTGGCC 1 chr2R:22740562-22740682 ( 16) TTTTGGCC 1 chrX:18926246-18926366 ( 16) TTTTGGCC 1 chr2R:24336638-24336758 ( 92) TTTTGGCC 1 chr3L:11773092-11773212 ( 108) TTTTGGCC 1 chr3R:12743768-12743888 ( 92) TTTTGGCC 1 chr3R:26894450-26894570 ( 57) TTTTGGCC 1 chr3L:10343470-10343590 ( 112) TTTTGGCC 1 chr3L:17921662-17921782 ( 87) TTATGGGC 1 chr2L:12495341-12495461 ( 45) TTATCGCC 1 chr2R:7614306-7614426 ( 101) TTATCGCC 1 chr3L:4365318-4365438 ( 33) TTATGGCG 1 chr3R:21851969-21852089 ( 82) TTATCGCC 1 chr3R:19925722-19925842 ( 60) TTATCGCC 1 chr2R:12368431-12368551 ( 71) TTATCGCC 1 chr2R:21570431-21570551 ( 87) TTATGGCG 1 chr2R:12263871-12263991 ( 91) TTATCGCC 1 chr3R:23715007-23715127 ( 82) TTATGGGC 1 chr3R:29282955-29283075 ( 5) TTTTGGCG 1 chrX:17109771-17109891 ( 47) TTTTGGGC 1 chr3L:1379834-1379954 ( 77) TTTTGGCG 1 chr3R:20260361-20260481 ( 105) TTTTGGCG 1 chr3R:16111040-16111160 ( 107) TTTTGGGC 1 chr3R:5813349-5813469 ( 13) TTCTGGCC 1 chr3L:16477304-16477424 ( 113) TTCTGGCC 1 chr3R:14398760-14398880 ( 49) TTCTGGCC 1 chr3L:14619123-14619243 ( 98) TTATCGCG 1 chr3R:21180132-21180252 ( 61) TTATCGGC 1 chrX:16703929-16704049 ( 43) TTATGGGG 1 chr2L:13434985-13435105 ( 25) TTATCGGC 1 chr2L:669896-670016 ( 21) TTATGGGG 1 chr2R:14338367-14338487 ( 24) TTATGGGG 1 chrX:12732606-12732726 ( 70) TTATCGCG 1 chr2L:634934-635054 ( 93) TTTTGGGG 1 chr3R:23496154-23496274 ( 67) TTTTCGGC 1 chr2R:15739043-15739163 ( 70) TTTTGGGG 1 chr3R:4761517-4761637 ( 82) TTATTGCC 1 chr3L:2801581-2801701 ( 65) TTATTGCC 1 chr3L:16155102-16155222 ( 52) TTTTTGCC 1 chr3L:488217-488337 ( 14) TTTTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 6.6e-007 -1210 -1210 -1210 178 -1210 -1210 -1210 178 69 -151 -1210 49 -1210 -1210 -1210 178 -1210 37 179 -168 -1210 -1210 239 -1210 -1210 191 52 -1210 -1210 191 52 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 6.6e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.522727 0.068182 0.000000 0.409091 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.659091 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.727273 0.272727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWTGGCC MEME-3 regular expression -------------------------------------------------------------------------------- TT[AT]T[GC]G[CG][CG] -------------------------------------------------------------------------------- Time 19.80 secs. ******************************************************************************** ******************************************************************************** MOTIF TGKCWGCB MEME-4 width = 8 sites = 26 llr = 235 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C ::2a::a3 probability G :a3:1a:4 matrix T a:5:5::2 bits 2.4 * * ** 2.2 * * ** 1.9 * * ** 1.7 ** * ** Relative 1.4 ** * ** Entropy 1.2 ** * ** (13.0 bits) 1.0 ** * ** 0.7 ** * *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTCAGCG consensus G T C sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13069900-13070020 64 6.46e-06 GACAGCGAAA TGTCTGCG AGTATctcag chr3R:7978521-7978641 107 6.46e-06 AAAAACTACC TGTCTGCG TGGCAG chr2L:14382020-14382140 32 6.46e-06 GGCTTGATTT TGTCTGCG TGGCAGGGCG chr3L:16914245-16914365 104 1.37e-05 ACATTGACTT TGTCAGCG AGTGATAAA chr3R:10683273-10683393 49 1.37e-05 GAATGTGCCT TGTCAGCG GGCCATAAAT chr3R:30314530-30314650 31 1.37e-05 aaaGCACACA TGTCAGCG TCATTTGCAT chr2R:9794054-9794174 5 1.37e-05 GAGC TGTCAGCG CCATACAAAT chr2L:634934-635054 65 2.45e-05 CAGATGCCTG TGTCTGCC CGAATCCATG chr2R:17834066-17834186 103 2.45e-05 AAAAATGAAT TGGCTGCG ATACAAAGTC chrX:11430262-11430382 43 4.51e-05 ATACTTAGTA TGCCTGCG AACGTCTAGA chrX:3151263-3151383 18 4.51e-05 CATGAGATCT TGGCTGCC CGAAAAGCGT chrX:3751163-3751283 2 5.47e-05 t tgGCAGCC TTCGTGGCAA chr2R:9443950-9444070 108 5.47e-05 TGCAATAAAA TGGCAGCC GAAGC chr3R:17825553-17825673 80 5.47e-05 GAAACGGGTT TGCCAGCG ACTGGTTCGC chr2R:12786702-12786822 48 5.47e-05 TGCCAAGTTT TGGCAGCC GACAGCAGGA chr3R:8876167-8876287 1 5.91e-05 . TGCCTGCC TGTTAGCCCG chr3R:20765384-20765504 77 5.91e-05 CAAATGTGGA TGCCTGCC TGTACGTTAG chr3L:14619123-14619243 36 6.40e-05 GTTTCTTTTC TGCCAGCC ATTTGCCTTG chrX:2301760-2301880 67 7.38e-05 CGTTCTCTTT TGTCTGCT GCGCTtgtgt chr3L:2801581-2801701 9 7.38e-05 TCCATCTC TGTCTGCT CTTTTTTTTC chr3R:17702089-17702209 50 8.48e-05 TATGTCTGGC TGTCAGCT GCTGCCGATG chr3R:23496154-23496274 78 8.48e-05 TTTCGGCCAT TGTCAGCT TCGCAAAAAT chr3R:14398760-14398880 96 9.12e-05 TATCTCAGTT TGGCTGCT TCACGAGTTT chr3R:31435609-31435729 94 1.24e-04 GTTGTCAGAT TGTCGGCC TGCGTTGTCG chrX:5092057-5092177 77 1.24e-04 CGTGTTCCAA TGCCAGCT GCAGACTCAA chr3R:23715007-23715127 64 1.24e-04 TACACTTTAT TGGCGGCG ATAAGGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13069900-13070020 6.5e-06 63_[+4]_49 chr3R:7978521-7978641 6.5e-06 106_[+4]_6 chr2L:14382020-14382140 6.5e-06 31_[+4]_81 chr3L:16914245-16914365 1.4e-05 103_[+4]_9 chr3R:10683273-10683393 1.4e-05 48_[+4]_64 chr3R:30314530-30314650 1.4e-05 30_[+4]_82 chr2R:9794054-9794174 1.4e-05 4_[+4]_108 chr2L:634934-635054 2.4e-05 64_[+4]_48 chr2R:17834066-17834186 2.4e-05 102_[+4]_10 chrX:11430262-11430382 4.5e-05 42_[+4]_70 chrX:3151263-3151383 4.5e-05 17_[+4]_95 chrX:3751163-3751283 5.5e-05 1_[+4]_111 chr2R:9443950-9444070 5.5e-05 107_[+4]_5 chr3R:17825553-17825673 5.5e-05 79_[+4]_33 chr2R:12786702-12786822 5.5e-05 47_[+4]_65 chr3R:8876167-8876287 5.9e-05 [+4]_112 chr3R:20765384-20765504 5.9e-05 76_[+4]_36 chr3L:14619123-14619243 6.4e-05 35_[+4]_77 chrX:2301760-2301880 7.4e-05 66_[+4]_46 chr3L:2801581-2801701 7.4e-05 8_[+4]_104 chr3R:17702089-17702209 8.5e-05 49_[+4]_63 chr3R:23496154-23496274 8.5e-05 77_[+4]_35 chr3R:14398760-14398880 9.1e-05 95_[+4]_17 chr3R:31435609-31435729 0.00012 93_[+4]_19 chrX:5092057-5092177 0.00012 76_[+4]_36 chr3R:23715007-23715127 0.00012 63_[+4]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGKCWGCB width=8 seqs=26 chr2L:13069900-13070020 ( 64) TGTCTGCG 1 chr3R:7978521-7978641 ( 107) TGTCTGCG 1 chr2L:14382020-14382140 ( 32) TGTCTGCG 1 chr3L:16914245-16914365 ( 104) TGTCAGCG 1 chr3R:10683273-10683393 ( 49) TGTCAGCG 1 chr3R:30314530-30314650 ( 31) TGTCAGCG 1 chr2R:9794054-9794174 ( 5) TGTCAGCG 1 chr2L:634934-635054 ( 65) TGTCTGCC 1 chr2R:17834066-17834186 ( 103) TGGCTGCG 1 chrX:11430262-11430382 ( 43) TGCCTGCG 1 chrX:3151263-3151383 ( 18) TGGCTGCC 1 chrX:3751163-3751283 ( 2) TGGCAGCC 1 chr2R:9443950-9444070 ( 108) TGGCAGCC 1 chr3R:17825553-17825673 ( 80) TGCCAGCG 1 chr2R:12786702-12786822 ( 48) TGGCAGCC 1 chr3R:8876167-8876287 ( 1) TGCCTGCC 1 chr3R:20765384-20765504 ( 77) TGCCTGCC 1 chr3L:14619123-14619243 ( 36) TGCCAGCC 1 chrX:2301760-2301880 ( 67) TGTCTGCT 1 chr3L:2801581-2801701 ( 9) TGTCTGCT 1 chr3R:17702089-17702209 ( 50) TGTCAGCT 1 chr3R:23496154-23496274 ( 78) TGTCAGCT 1 chr3R:14398760-14398880 ( 96) TGGCTGCT 1 chr3R:31435609-31435729 ( 94) TGTCGGCC 1 chrX:5092057-5092177 ( 77) TGCCAGCT 1 chr3R:23715007-23715127 ( 64) TGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 2.4e+002 -1134 -1134 -1134 178 -1134 -1134 239 -1134 -1134 25 50 78 -1134 237 -1134 -1134 51 -1134 -131 66 -1134 -1134 239 -1134 -1134 237 -1134 -1134 -1134 84 115 -34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.269231 0.500000 0.000000 1.000000 0.000000 0.000000 0.461538 0.000000 0.076923 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.346154 0.423077 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGKCWGCB MEME-4 regular expression -------------------------------------------------------------------------------- TG[TGC]C[AT]GC[GCT] -------------------------------------------------------------------------------- Time 25.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGGCC MEME-5 width = 8 sites = 4 llr = 51 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:::a8 probability G a::aaa:3 matrix T :::::::: bits 2.4 ******* 2.2 ******* 1.9 ******* 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6162682-6162802 65 1.89e-06 GACTGAGCTA GCCGGGCC TCTTGGTGTG chr3R:7978521-7978641 86 1.89e-06 TTGAGATTGA GCCGGGCC CAAAAAAACT chr2L:11965746-11965866 89 1.89e-06 CCAACTTTGA GCCGGGCC AAGGAAAAAG chr3L:4161013-4161133 27 3.74e-06 CCACCCGAGT GCCGGGCG CTTTCGTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6162682-6162802 1.9e-06 64_[+5]_48 chr3R:7978521-7978641 1.9e-06 85_[+5]_27 chr2L:11965746-11965866 1.9e-06 88_[+5]_24 chr3L:4161013-4161133 3.7e-06 26_[+5]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGGCC width=8 seqs=4 chr2R:6162682-6162802 ( 65) GCCGGGCC 1 chr3R:7978521-7978641 ( 86) GCCGGGCC 1 chr2L:11965746-11965866 ( 89) GCCGGGCC 1 chr3L:4161013-4161133 ( 27) GCCGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.2e+003 -865 -865 239 -865 -865 236 -865 -865 -865 236 -865 -865 -865 -865 239 -865 -865 -865 239 -865 -865 -865 239 -865 -865 236 -865 -865 -865 195 39 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGGCC MEME-5 regular expression -------------------------------------------------------------------------------- GCCGGGC[CG] -------------------------------------------------------------------------------- Time 31.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14382020-14382140 5.95e-04 31_[+4(6.46e-06)]_81 chr2R:22568981-22569101 5.16e-01 120 chr3R:23715007-23715127 1.11e-02 81_[+3(5.35e-05)]_31 chrM:18546-18666 4.16e-02 90_[+1(5.14e-05)]_22 chrX:5092057-5092177 4.02e-02 120 chrX:16072355-16072475 2.17e-01 9_[+1(8.52e-05)]_103 chr3R:14443517-14443637 4.87e-02 120 chr3R:10434696-10434816 2.95e-01 120 chr2L:429534-429654 5.34e-01 120 chr2R:15739043-15739163 2.05e-03 120 chr3R:16111040-16111160 5.15e-03 91_[+1(5.14e-05)]_[+1(5.14e-05)]_13 chr2R:8737980-8738100 2.12e-01 120 chr3R:25634547-25634667 4.21e-02 120 chr3L:3425614-3425734 1.31e-01 120 chr3R:14398760-14398880 1.00e-03 13_[+1(5.14e-05)]_27_[+3(8.95e-05)]_\ 39_[+4(9.12e-05)]_17 chrM:16653-16773 4.00e-01 120 chr2L:5298835-5298955 1.48e-01 120 chrX:14936464-14936584 8.97e-01 120 chrM:17661-17781 4.16e-02 46_[+1(5.14e-05)]_66 chr3L:16477304-16477424 2.28e-03 94_[+1(5.14e-05)]_10_[+3(8.95e-05)] chr3L:3249378-3249498 4.43e-01 120 chr2R:12263871-12263991 1.22e-01 90_[+3(5.35e-05)]_22 chr2L:11965746-11965866 1.53e-03 88_[+5(1.89e-06)]_24 chr2R:14088777-14088897 2.81e-01 120 chr2R:12382822-12382942 8.22e-02 120 chr2R:21570431-21570551 1.09e-02 54_[+1(5.14e-05)]_[+1(5.14e-05)]_16_\ [+3(5.35e-05)]_26 chrX:12732606-12732726 3.98e-03 120 chr2R:8463813-8463933 1.24e-01 120 chr3R:7978521-7978641 5.55e-07 85_[+5(1.89e-06)]_13_[+4(6.46e-06)]_\ 6 chr3R:7523805-7523925 5.15e-01 120 chr3R:10595944-10596064 6.33e-01 120 chr2L:5145090-5145210 1.08e-01 120 chr2R:8234295-8234415 2.86e-02 40_[+1(5.14e-05)]_72 chr2R:24285995-24286115 3.47e-02 120 chr2R:8721773-8721893 1.94e-01 120 chr3R:20260361-20260481 5.78e-02 104_[+3(8.29e-05)]_8 chr3L:20926946-20927066 7.92e-03 44_[+1(5.14e-05)]_68 chr3R:18472815-18472935 6.23e-01 120 chrX:3139186-3139306 3.32e-02 120 chr3R:27199008-27199128 3.11e-02 120 chr2R:9794054-9794174 1.14e-02 4_[+4(1.37e-05)]_108 chr3R:30314530-30314650 8.22e-03 30_[+4(1.37e-05)]_82 chr3L:10343470-10343590 2.28e-03 111_[+3(2.08e-05)]_1 chr3R:26894450-26894570 5.08e-04 56_[+3(2.08e-05)]_48_[+1(5.14e-05)] chr3R:7322670-7322790 3.96e-02 120 chr3L:1090144-1090264 6.63e-01 120 chr2R:12786702-12786822 3.85e-03 15_[+5(6.52e-05)]_24_[+4(5.47e-05)]_\ 65 chr3L:488217-488337 3.26e-02 120 chr3R:5813349-5813469 1.51e-01 12_[+3(8.95e-05)]_100 chr2R:8443025-8443145 2.47e-01 120 chr2L:7970323-7970443 1.09e-01 120 chr3R:18445239-18445359 7.89e-03 62_[+4(5.47e-05)]_50 chr2R:12368431-12368551 3.53e-03 70_[+3(5.35e-05)]_42 chr3L:21385321-21385441 1.61e-01 120 chr3R:31437872-31437992 8.38e-01 120 chr2R:21378273-21378393 2.59e-01 120 chr3L:607704-607824 6.93e-01 120 chr2R:14338367-14338487 1.80e-02 120 chr3L:15648313-15648433 9.71e-02 120 chr3L:18019090-18019210 1.47e-01 120 chr3L:10712113-10712233 1.11e-01 88_[+1(5.14e-05)]_24 chr3L:16167901-16168021 1.61e-01 120 chr2L:2795563-2795683 4.74e-01 120 chr3L:14402820-14402940 9.40e-01 120 chr2L:18789087-18789207 3.82e-01 120 chr3R:20265959-20266079 2.40e-01 120 chrX:3151263-3151383 4.44e-03 17_[+4(4.51e-05)]_78_[+1(5.14e-05)]_\ [+1(5.14e-05)]_1 chr3L:3776892-3777012 4.46e-02 101_[+3(1.10e-05)]_11 chr3R:17825553-17825673 2.70e-02 79_[+4(5.47e-05)]_33 chr3L:10223530-10223650 1.38e-01 120 chr3L:15221141-15221261 7.14e-01 120 chr3L:1379834-1379954 3.87e-02 76_[+3(8.29e-05)]_36 chrX:11496542-11496662 1.88e-02 120 chr3R:19925722-19925842 2.25e-02 59_[+3(5.35e-05)]_53 chr2R:14315660-14315780 4.77e-02 120 chr3R:19312463-19312583 3.54e-02 120 chr2L:9126173-9126293 1.65e-01 120 chr3L:16155102-16155222 4.91e-03 36_[+1(5.14e-05)]_76 chrX:16334719-16334839 3.29e-02 24_[+1(8.52e-05)]_88 chr2R:6867802-6867922 7.86e-02 42_[+1(8.52e-05)]_70 chr3R:19071362-19071482 6.35e-01 120 chr2L:669896-670016 1.47e-01 120 chr3L:7530595-7530715 1.38e-02 [+1(8.52e-05)]_112 chr2L:3307328-3307448 4.28e-01 120 chr2L:5195708-5195828 8.79e-01 120 chr3L:13946194-13946314 1.37e-01 120 chr3R:21851969-21852089 1.26e-02 81_[+3(5.35e-05)]_31 chr2L:4037093-4037213 3.52e-02 8_[+1(5.14e-05)]_87_[+1(8.52e-05)]_\ 9 chr3R:30248056-30248176 5.20e-02 44_[+1(5.14e-05)]_68 chrX:5005671-5005791 1.66e-01 55_[+1(5.14e-05)]_57 chr3L:19941092-19941212 3.58e-01 120 chr2L:8327030-8327150 3.00e-02 111_[+1(5.14e-05)]_1 chr2L:2804009-2804129 2.33e-01 120 chr3R:23496154-23496274 1.42e-02 77_[+4(8.48e-05)]_35 chr2L:3770603-3770723 1.18e-01 120 chr3R:9968369-9968489 4.20e-01 120 chr2R:13602306-13602426 1.91e-01 120 chr2R:6173113-6173233 8.63e-01 120 chr2L:8352008-8352128 4.64e-03 120 chr2L:18559288-18559408 3.57e-01 120 chr2R:9443950-9444070 3.98e-03 107_[+4(5.47e-05)]_5 chr3R:12743768-12743888 1.31e-01 91_[+3(2.08e-05)]_21 chr3R:19065647-19065767 3.82e-01 120 chr3L:2801581-2801701 1.42e-04 8_[+4(7.38e-05)]_1_[+1(5.14e-05)]_\ 29_[+1(8.52e-05)]_58 chr2L:14010529-14010649 6.54e-01 120 chr3R:14024090-14024210 2.01e-01 120 chr3R:21007094-21007214 1.23e-01 120 chr3L:20735545-20735665 8.92e-01 120 chrM:19285-19405 6.70e-01 120 chrX:2653956-2654076 9.93e-01 120 chr3R:17702089-17702209 1.77e-01 49_[+4(8.48e-05)]_63 chr2L:3305468-3305588 1.98e-01 120 chr2L:13434985-13435105 7.58e-02 120 chr2R:22150660-22150780 4.65e-02 120 chr2R:11607236-11607356 4.96e-01 120 chr3L:11773092-11773212 6.26e-03 60_[+1(5.14e-05)]_39_[+3(2.08e-05)]_\ 5 chr2L:7005598-7005718 3.71e-01 120 chr3L:16984193-16984313 6.70e-02 120 chr3L:2402344-2402464 3.03e-01 120 chrM:16006-16126 2.08e-02 63_[+1(5.14e-05)]_49 chr3R:10683273-10683393 7.99e-03 48_[+4(1.37e-05)]_64 chr3L:9097486-9097606 2.04e-02 19_[+1(5.14e-05)]_93 chr3R:19309244-19309364 3.31e-01 120 chr3L:4365318-4365438 2.07e-02 32_[+3(5.35e-05)]_80 chr2R:24336638-24336758 4.19e-02 91_[+3(2.08e-05)]_21 chr3R:21649165-21649285 7.34e-01 120 chr3R:24278880-24279000 2.81e-01 120 chr2R:7614306-7614426 1.73e-03 36_[+5(6.52e-05)]_56_[+3(5.35e-05)]_\ 12 chr3L:9063697-9063817 1.02e-03 77_[+1(8.52e-05)]_35 chr3L:14618923-14619043 7.98e-01 120 chr3R:11805618-11805738 6.60e-01 120 chr2L:3354454-3354574 1.35e-01 120 chr2R:11340177-11340297 4.65e-01 120 chr3L:3096742-3096862 2.93e-01 120 chr3L:7792873-7792993 2.09e-01 120 chrX:2301760-2301880 4.41e-02 66_[+4(7.38e-05)]_46 chr3L:11320233-11320353 9.68e-02 120 chrX:17109771-17109891 5.18e-04 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************