******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CoRest.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:4627119-4627239 1.0000 120 chrX:19522784-19522904 1.0000 120 chr2R:11219357-11219477 1.0000 120 chrX:5560670-5560790 1.0000 120 chr3L:7916322-7916442 1.0000 120 chr3R:9214413-9214533 1.0000 120 chr4:989527-989647 1.0000 120 chrX:9250239-9250359 1.0000 120 chr2R:14458119-14458239 1.0000 120 chr2R:24337624-24337744 1.0000 120 chrX:7706623-7706743 1.0000 120 chr2L:10989296-10989416 1.0000 120 chr3R:8190980-8191100 1.0000 120 chr2L:20066264-20066384 1.0000 120 chr3L:10893608-10893728 1.0000 120 chr2R:22420670-22420790 1.0000 120 chr3R:18438904-18439024 1.0000 120 chr2R:6219976-6220096 1.0000 120 chr3R:14308855-14308975 1.0000 120 chr3R:12431061-12431181 1.0000 120 chr2R:8018899-8019019 1.0000 120 chrX:5593991-5594111 1.0000 120 chrX:17768258-17768378 1.0000 120 chr3L:4553499-4553619 1.0000 120 chr3R:13964631-13964751 1.0000 120 chr3R:4852492-4852612 1.0000 120 chr2R:20903610-20903730 1.0000 120 chr3L:1295763-1295883 1.0000 120 chr3L:5828875-5828995 1.0000 120 chr3L:16808251-16808371 1.0000 120 chrX:3455575-3455695 1.0000 120 chr3R:13446652-13446772 1.0000 120 chr2R:7939130-7939250 1.0000 120 chrX:12496961-12497081 1.0000 120 chr3L:10796090-10796210 1.0000 120 chr2R:9711939-9712059 1.0000 120 chr3R:23820432-23820552 1.0000 120 chr3R:12562127-12562247 1.0000 120 chr3R:20824231-20824351 1.0000 120 chr3L:4355388-4355508 1.0000 120 chrX:14234179-14234299 1.0000 120 chr3L:18227483-18227603 1.0000 120 chr2L:4286236-4286356 1.0000 120 chr3L:10428902-10429022 1.0000 120 chr3L:3786929-3787049 1.0000 120 chr3R:4311241-4311361 1.0000 120 chr2L:14537547-14537667 1.0000 120 chr3L:9704246-9704366 1.0000 120 chr3R:13064255-13064375 1.0000 120 chr3R:9237920-9238040 1.0000 120 chr3L:4242554-4242674 1.0000 120 chrX:8624961-8625081 1.0000 120 chrX:4425090-4425210 1.0000 120 chrX:6255555-6255675 1.0000 120 chr2R:18374574-18374694 1.0000 120 chr3R:16215052-16215172 1.0000 120 chr3R:30912487-30912607 1.0000 120 chr3L:11278938-11279058 1.0000 120 chr3R:16948735-16948855 1.0000 120 chr3L:16825325-16825445 1.0000 120 chr3L:14328501-14328621 1.0000 120 chrX:1215174-1215294 1.0000 120 chr2R:8759571-8759691 1.0000 120 chrX:12225447-12225567 1.0000 120 chr3R:21134005-21134125 1.0000 120 chrX:17780437-17780557 1.0000 120 chr2R:12344821-12344941 1.0000 120 chrX:5312155-5312275 1.0000 120 chr2R:12140458-12140578 1.0000 120 chrX:14593214-14593334 1.0000 120 chrX:9082678-9082798 1.0000 120 chr2L:19430443-19430563 1.0000 120 chrX:9693950-9694070 1.0000 120 chr3L:15275610-15275730 1.0000 120 chr3R:21446511-21446631 1.0000 120 chr3L:7510818-7510938 1.0000 120 chr2L:5446003-5446123 1.0000 120 chr2L:17477848-17477968 1.0000 120 chr2R:5293865-5293985 1.0000 120 chr2L:7306904-7307024 1.0000 120 chrX:13320808-13320928 1.0000 120 chr3L:3437213-3437333 1.0000 120 chrX:4411599-4411719 1.0000 120 chr3L:19073980-19074100 1.0000 120 chrX:18837184-18837304 1.0000 120 chrX:15066572-15066692 1.0000 120 chr3R:10350046-10350166 1.0000 120 chr2L:6819585-6819705 1.0000 120 chr2L:17588783-17588903 1.0000 120 chr3L:6969192-6969312 1.0000 120 chr3R:21613062-21613182 1.0000 120 chr3L:110095-110215 1.0000 120 chrX:3109031-3109151 1.0000 120 chr2R:11602005-11602125 1.0000 120 chrX:13296850-13296970 1.0000 120 chrX:7968444-7968564 1.0000 120 chr2R:12636512-12636632 1.0000 120 chr3R:22639332-22639452 1.0000 120 chr3R:9039590-9039710 1.0000 120 chrX:12631387-12631507 1.0000 120 chr3R:10520666-10520786 1.0000 120 chr2L:1973981-1974101 1.0000 120 chr2L:16869180-16869300 1.0000 120 chr2L:18881494-18881614 1.0000 120 chr3L:8951142-8951262 1.0000 120 chrX:19521992-19522112 1.0000 120 chr3L:3078572-3078692 1.0000 120 chr3L:16842160-16842280 1.0000 120 chrX:19964347-19964467 1.0000 120 chr3R:4835400-4835520 1.0000 120 chr3R:8867815-8867935 1.0000 120 chr2R:10439075-10439195 1.0000 120 chr3R:26014362-26014482 1.0000 120 chr2R:20257436-20257556 1.0000 120 chrX:15890275-15890395 1.0000 120 chr3R:5660188-5660308 1.0000 120 chr3R:13078429-13078549 1.0000 120 chr3L:18402655-18402775 1.0000 120 chr2R:10681389-10681509 1.0000 120 chr3R:16764110-16764230 1.0000 120 chr3R:6657484-6657604 1.0000 120 chr2R:10075628-10075748 1.0000 120 chr2L:1614203-1614323 1.0000 120 chr2R:20327000-20327120 1.0000 120 chr3R:8181565-8181685 1.0000 120 chr3R:15129054-15129174 1.0000 120 chrX:3019706-3019826 1.0000 120 chr3R:12350664-12350784 1.0000 120 chr3L:3770940-3771060 1.0000 120 chr3R:22639533-22639653 1.0000 120 chrX:8445018-8445138 1.0000 120 chr2L:18484811-18484931 1.0000 120 chr3R:15139642-15139762 1.0000 120 chr2L:5403686-5403806 1.0000 120 chr3L:10767272-10767392 1.0000 120 chr3L:17044998-17045118 1.0000 120 chr3L:18782211-18782331 1.0000 120 chr3L:16381584-16381704 1.0000 120 chr2L:15061499-15061619 1.0000 120 chrX:17696793-17696913 1.0000 120 chr3L:4170029-4170149 1.0000 120 chrX:11081334-11081454 1.0000 120 chrX:14840626-14840746 1.0000 120 chr3L:24723874-24723994 1.0000 120 chr2R:7054359-7054479 1.0000 120 chr3L:10661135-10661255 1.0000 120 chr2R:14305265-14305385 1.0000 120 chr3L:13964802-13964922 1.0000 120 chrX:947648-947768 1.0000 120 chr3R:18311322-18311442 1.0000 120 chr2L:8415399-8415519 1.0000 120 chr2L:14024853-14024973 1.0000 120 chrX:12595787-12595907 1.0000 120 chrX:13274551-13274671 1.0000 120 chr2L:22024566-22024686 1.0000 120 chr3R:8349519-8349639 1.0000 120 chr3R:30304987-30305107 1.0000 120 chr2L:7957097-7957217 1.0000 120 chr3R:28599565-28599685 1.0000 120 chr2R:22886291-22886411 1.0000 120 chr3L:1302780-1302900 1.0000 120 chr2R:10077922-10078042 1.0000 120 chr2L:5520064-5520184 1.0000 120 chr2R:5726936-5727056 1.0000 120 chrX:17709928-17710048 1.0000 120 chr2R:11529616-11529736 1.0000 120 chr3L:6904138-6904258 1.0000 120 chr3L:13356176-13356296 1.0000 120 chr2L:14441035-14441155 1.0000 120 chr3R:6468130-6468250 1.0000 120 chr2R:12468358-12468478 1.0000 120 chrX:17330447-17330567 1.0000 120 chr3L:14172644-14172764 1.0000 120 chr3L:6189266-6189386 1.0000 120 chr3R:16025866-16025986 1.0000 120 chr3L:14363165-14363285 1.0000 120 chr2L:11447780-11447900 1.0000 120 chr3R:23722092-23722212 1.0000 120 chr3R:25184123-25184243 1.0000 120 chr3L:11074543-11074663 1.0000 120 chr3L:16386081-16386201 1.0000 120 chr3R:20259461-20259581 1.0000 120 chr2L:20097296-20097416 1.0000 120 chrX:16944074-16944194 1.0000 120 chr3R:6791499-6791619 1.0000 120 chrX:19166434-19166554 1.0000 120 chr3R:12630444-12630564 1.0000 120 chr2L:5461269-5461389 1.0000 120 chrX:4426918-4427038 1.0000 120 chr3L:14131739-14131859 1.0000 120 chr2L:10850860-10850980 1.0000 120 chrX:8650887-8651007 1.0000 120 chr3R:29556089-29556209 1.0000 120 chr2L:15908554-15908674 1.0000 120 chr2L:15442314-15442434 1.0000 120 chr2L:10858244-10858364 1.0000 120 chr3L:6157771-6157891 1.0000 120 chr3R:15472776-15472896 1.0000 120 chr2L:14021479-14021599 1.0000 120 chr2L:11091248-11091368 1.0000 120 chr2R:10854291-10854411 1.0000 120 chrX:9899841-9899961 1.0000 120 chr3L:16853574-16853694 1.0000 120 chr2R:11275887-11276007 1.0000 120 chr2L:11199186-11199306 1.0000 120 chr2L:7871949-7872069 1.0000 120 chrX:16854872-16854992 1.0000 120 chr2R:14645077-14645197 1.0000 120 chr2L:7395922-7396042 1.0000 120 chr2L:540903-541023 1.0000 120 chr3R:15837191-15837311 1.0000 120 chr3L:6981969-6982089 1.0000 120 chr2R:14576011-14576131 1.0000 120 chr3L:14613972-14614092 1.0000 120 chr2L:14021276-14021396 1.0000 120 chrX:18404950-18405070 1.0000 120 chrX:1270708-1270828 1.0000 120 chr3L:9968394-9968514 1.0000 120 chrX:20631265-20631385 1.0000 120 chr2L:7957299-7957419 1.0000 120 chr3L:5926071-5926191 1.0000 120 chrX:3431815-3431935 1.0000 120 chr3L:13929217-13929337 1.0000 120 chr2R:15034890-15035010 1.0000 120 chrX:9202177-9202297 1.0000 120 chr3L:11350807-11350927 1.0000 120 chr2R:18834917-18835037 1.0000 120 chr2L:12542131-12542251 1.0000 120 chr3R:26888442-26888562 1.0000 120 chr3L:15592671-15592791 1.0000 120 chr2R:20587328-20587448 1.0000 120 chr3R:12980777-12980897 1.0000 120 chr3L:12336450-12336570 1.0000 120 chrX:15297195-15297315 1.0000 120 chr3R:26117761-26117881 1.0000 120 chr3L:6054931-6055051 1.0000 120 chr3R:18366410-18366530 1.0000 120 chr3L:4254473-4254593 1.0000 120 chr3R:27988822-27988942 1.0000 120 chr2L:4847517-4847637 1.0000 120 chrX:7617073-7617193 1.0000 120 chr3L:5813139-5813259 1.0000 120 chr3L:18003506-18003626 1.0000 120 chrX:21117053-21117173 1.0000 120 chr3R:17540179-17540299 1.0000 120 chr2L:15248688-15248808 1.0000 120 chr3R:26937583-26937703 1.0000 120 chr3L:13905664-13905784 1.0000 120 chr2L:20416826-20416946 1.0000 120 chr3R:5470758-5470878 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CoRest/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CoRest.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.341 C 0.165 G 0.162 T 0.332 Background letter frequencies (from file dataset with add-one prior applied): A 0.341 C 0.165 G 0.162 T 0.332 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TSKCGCWC MEME-1 width = 8 sites = 33 llr = 297 E-value = 1.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:1:3: pos.-specific C :7:a:a29 probability G 134:8::1 matrix T 9:5:::5: bits 2.6 * * 2.4 * * * 2.1 * * * 1.8 *** * Relative 1.6 * *** * Entropy 1.3 ** *** * (13.0 bits) 1.0 ** *** * 0.8 ** *** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel TCTCGCTC consensus GG A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5403686-5403806 32 2.14e-06 GCGCTCTCTT TCGCGCTC CCTTGCTTCT chrX:4426918-4427038 10 9.81e-06 ctctctccc tctcgctc tctctcgctT chr2L:11447780-11447900 65 9.81e-06 CATCGCTGCG TCTCGCTC TTCGACTGCC chr3L:6904138-6904258 36 9.81e-06 TTTAGTGTCA TCTCGCTC TGGCCATCGC chr2R:11529616-11529736 31 9.81e-06 ACTGTGCGCT TCTCGCTC ACTCTGCCCT chr3R:16764110-16764230 64 9.81e-06 CGGTTAGCCT TCTCGCTC GGATCGCTCT chr3R:21446511-21446631 27 9.81e-06 GGTAGTGTCA TCTCGCTC TGCTCGGCTC chrX:17768258-17768378 101 9.81e-06 TGAATTTCCC TCTCGCTC GCACGCTCTC chr3R:8190980-8191100 95 9.81e-06 ACTGTGTTGG TCTCGCTC TAGCGACAGC chr2R:14458119-14458239 10 9.81e-06 GTGGCGCCA TCTCGCTC TCGCCCACGA chrX:8650887-8651007 110 1.86e-05 gcggcatctc tctcGCAC GCC chr3R:23722092-23722212 78 1.86e-05 AGTCAACAGA TGGCGCTC TAAAATCTTT chrX:5560670-5560790 71 1.86e-05 GCCGTGCTCT TCTCGCAC ACGCGTAACC chr3R:18366410-18366530 3 1.97e-05 AT TGGCGCCC CACATTTTGG chr3L:9968394-9968514 65 2.18e-05 CTGGTTAAAA TGGCGCAC CCACAAGCAG chr2L:7306904-7307024 79 2.18e-05 GGTGCTCTTC TGGCGCAC GCAGCTGCAA chr3R:30912487-30912607 12 2.18e-05 agCACAGCAA TGGCGCAC TGCAAACACC chrX:5593991-5594111 99 2.61e-05 ACTGCAGCGC TGTCGCTC GTGCCATCCC chr2R:8018899-8019019 8 2.83e-05 CTCTCCC TGTCGCCC TGTCTCCCTC chr2L:18881494-18881614 63 3.27e-05 CAGGTGTTTT TGTCGCAC TCGCTCTGCG chr3R:4852492-4852612 81 3.27e-05 TTCTTAGAGT TGTCGCAC TCGCACCCAT chr2L:7957299-7957419 72 3.43e-05 TTTTCAGTCT GCGCGCCC AGTGTCAGTG chr3R:26937583-26937703 53 5.59e-05 TATCTGATGA TCACGCAC TTGTTTATTT chr2R:5726936-5727056 103 5.59e-05 AGTAGCTCGT TCCCGCTC TAGAGCACAG chr3R:8181565-8181685 40 6.22e-05 TACAAGATGG TCGCGCTG TCAAGCAGTG chr3R:4835400-4835520 110 7.77e-05 CCGTCCGCAT TCGCACCC TAG chrX:4411599-4411719 58 7.77e-05 GCCGTCTTTT TCGCACCC ATGCGAAAGT chr2L:10858244-10858364 13 1.17e-04 AATATACGCT TCTCACCC GTAGGAGAAT chr3R:30304987-30305107 77 1.26e-04 CAAAAAATTA TCGCCCTC TCACAAATTC chr3R:16948735-16948855 58 1.44e-04 GGCGGCGGCA TGGCGCCG CAGAAGAGCA chr3L:4242554-4242674 89 1.99e-04 TATTCAAATG GCACGCAC TGTACATAGC chr3R:13064255-13064375 17 1.99e-04 TACGTATTAC GCACGCAC TCACACCAAT chrX:4425090-4425210 43 2.10e-04 TGGTTAAACT TGTCACAC AAGCAAAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5403686-5403806 2.1e-06 31_[+1]_81 chrX:4426918-4427038 9.8e-06 9_[+1]_103 chr2L:11447780-11447900 9.8e-06 64_[+1]_48 chr3L:6904138-6904258 9.8e-06 35_[+1]_77 chr2R:11529616-11529736 9.8e-06 30_[+1]_82 chr3R:16764110-16764230 9.8e-06 63_[+1]_49 chr3R:21446511-21446631 9.8e-06 26_[+1]_86 chrX:17768258-17768378 9.8e-06 100_[+1]_12 chr3R:8190980-8191100 9.8e-06 94_[+1]_18 chr2R:14458119-14458239 9.8e-06 9_[+1]_103 chrX:8650887-8651007 1.9e-05 109_[+1]_3 chr3R:23722092-23722212 1.9e-05 77_[+1]_35 chrX:5560670-5560790 1.9e-05 70_[+1]_42 chr3R:18366410-18366530 2e-05 2_[+1]_110 chr3L:9968394-9968514 2.2e-05 64_[+1]_48 chr2L:7306904-7307024 2.2e-05 78_[+1]_34 chr3R:30912487-30912607 2.2e-05 11_[+1]_101 chrX:5593991-5594111 2.6e-05 98_[+1]_14 chr2R:8018899-8019019 2.8e-05 7_[+1]_105 chr2L:18881494-18881614 3.3e-05 62_[+1]_50 chr3R:4852492-4852612 3.3e-05 80_[+1]_32 chr2L:7957299-7957419 3.4e-05 71_[+1]_41 chr3R:26937583-26937703 5.6e-05 52_[+1]_60 chr2R:5726936-5727056 5.6e-05 102_[+1]_10 chr3R:8181565-8181685 6.2e-05 39_[+1]_73 chr3R:4835400-4835520 7.8e-05 109_[+1]_3 chrX:4411599-4411719 7.8e-05 57_[+1]_55 chr2L:10858244-10858364 0.00012 12_[+1]_100 chr3R:30304987-30305107 0.00013 76_[+1]_36 chr3R:16948735-16948855 0.00014 57_[+1]_55 chr3L:4242554-4242674 0.0002 88_[+1]_24 chr3R:13064255-13064375 0.0002 16_[+1]_96 chrX:4425090-4425210 0.00021 42_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSKCGCWC width=8 seqs=33 chr2L:5403686-5403806 ( 32) TCGCGCTC 1 chrX:4426918-4427038 ( 10) TCTCGCTC 1 chr2L:11447780-11447900 ( 65) TCTCGCTC 1 chr3L:6904138-6904258 ( 36) TCTCGCTC 1 chr2R:11529616-11529736 ( 31) TCTCGCTC 1 chr3R:16764110-16764230 ( 64) TCTCGCTC 1 chr3R:21446511-21446631 ( 27) TCTCGCTC 1 chrX:17768258-17768378 ( 101) TCTCGCTC 1 chr3R:8190980-8191100 ( 95) TCTCGCTC 1 chr2R:14458119-14458239 ( 10) TCTCGCTC 1 chrX:8650887-8651007 ( 110) TCTCGCAC 1 chr3R:23722092-23722212 ( 78) TGGCGCTC 1 chrX:5560670-5560790 ( 71) TCTCGCAC 1 chr3R:18366410-18366530 ( 3) TGGCGCCC 1 chr3L:9968394-9968514 ( 65) TGGCGCAC 1 chr2L:7306904-7307024 ( 79) TGGCGCAC 1 chr3R:30912487-30912607 ( 12) TGGCGCAC 1 chrX:5593991-5594111 ( 99) TGTCGCTC 1 chr2R:8018899-8019019 ( 8) TGTCGCCC 1 chr2L:18881494-18881614 ( 63) TGTCGCAC 1 chr3R:4852492-4852612 ( 81) TGTCGCAC 1 chr2L:7957299-7957419 ( 72) GCGCGCCC 1 chr3R:26937583-26937703 ( 53) TCACGCAC 1 chr2R:5726936-5727056 ( 103) TCCCGCTC 1 chr3R:8181565-8181685 ( 40) TCGCGCTG 1 chr3R:4835400-4835520 ( 110) TCGCACCC 1 chrX:4411599-4411719 ( 58) TCGCACCC 1 chr2L:10858244-10858364 ( 13) TCTCACCC 1 chr3R:30304987-30305107 ( 77) TCGCCCTC 1 chr3R:16948735-16948855 ( 58) TGGCGCCG 1 chr3L:4242554-4242674 ( 89) GCACGCAC 1 chr3R:13064255-13064375 ( 17) GCACGCAC 1 chrX:4425090-4425210 ( 43) TGTCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 1.1e-004 -1169 -1169 -84 145 -1169 202 104 -1169 -191 -244 116 63 -1169 260 -1169 -1169 -149 -244 239 -1169 -1169 260 -1169 -1169 -3 37 -1169 45 -1169 251 -142 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.1e-004 0.000000 0.000000 0.090909 0.909091 0.000000 0.666667 0.333333 0.000000 0.090909 0.030303 0.363636 0.515152 0.000000 1.000000 0.000000 0.000000 0.121212 0.030303 0.848485 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.212121 0.000000 0.454545 0.000000 0.939394 0.060606 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSKCGCWC MEME-1 regular expression -------------------------------------------------------------------------------- T[CG][TG]CGC[TAC]C -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF WGCRAGMG MEME-2 width = 8 sites = 44 llr = 365 E-value = 2.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::58:42 pos.-specific C ::a:::6: probability G :a:5:a:6 matrix T 5:::2::2 bits 2.6 ** * 2.4 ** * 2.1 ** * 1.8 ** * Relative 1.6 ** * Entropy 1.3 ** * (12.0 bits) 1.0 *** ** 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TGCAAGCG consensus A G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14131739-14131859 91 2.12e-06 TGCGTGGGAG TGCGAGCG AGATAAACGG chrX:21117053-21117173 33 8.77e-06 AGTCAGCTTT TGCAAGCG TTTCGCTGTG chr2R:8018899-8019019 92 8.77e-06 CCTGCTGCAG TGCAAGCG AGACAACCGT chr2L:20066264-20066384 97 8.77e-06 ACCGTTCGCT TGCAAGCG GTCACACAGT chr3R:18438904-18439024 86 1.34e-05 CTCTTTGTAA AGCAAGCG TTGTCGAATT chrX:5560670-5560790 35 1.34e-05 TGAGGAGAGC AGCAAGCG CCTTCCAAGC chr3R:6791499-6791619 90 1.77e-05 CAGTCGCGCT TGCGAGAG AACTATGGTC chr3R:16948735-16948855 86 1.77e-05 CTGCCCACTT TGCGAGAG CGTGAGGGAG chr3R:29556089-29556209 39 2.23e-05 ACCACACTGA AGCGAGAG CGAAAGAGAA chrX:4411599-4411719 87 2.23e-05 CCGCAGTGTG AGCGAGAG GGAATGCGTT chrX:9693950-9694070 78 2.23e-05 agcgagagag agcgagag ctggctcagc chr3R:30912487-30912607 48 2.23e-05 AGTGAGAGAG AGCGAGAG AGTGCCGACT chrX:8624961-8625081 111 2.23e-05 TGCGAGTGGG AGCGAGAG AG chrX:5593991-5594111 28 2.23e-05 CAAGGGCGTG AGCGAGAG GGTTGGACGA chr3R:8181565-8181685 6 2.43e-05 gagtg tgcgtgCG CTAGTATGCT chr2L:10989296-10989416 62 2.43e-05 GAACAGCTGG TGCGTGCG CAATCGGTAT chr2R:14458119-14458239 109 2.43e-05 CTCGCCCGTG TGCGTGCG CGTT chr2L:1973981-1974101 50 4.45e-05 AAAATTCAAA TGCAAGAG ACATTCACTG chrX:14234179-14234299 83 4.45e-05 CGCTGAGCAA TGCAAGAG TGTGGTCACA chrX:18404950-18405070 7 6.30e-05 CAAACG AGCGAGCT CTTTCTATGA chr3R:16025866-16025986 66 6.30e-05 TAAGTAAGAG AGCGAGCT AGCAAGACGG chr2L:16869180-16869300 112 6.74e-05 TTTCTCTGAG TGCATGCG G chr3R:4852492-4852612 49 7.40e-05 CCGACTCTGG AGCATGCG AGGAGGCGGC chr3L:14613972-14614092 111 7.61e-05 GTCCTATCAG TGCGAGCC TT chr3R:18366410-18366530 46 9.47e-05 GCAGAGCCTG TGCAAGCT TGACCACCTT chr2L:19430443-19430563 8 9.47e-05 TGCTTAA TGCAAGCA TACCACCACA chrX:17780437-17780557 11 9.47e-05 AAAAAACCAC TGCAAGCA AGTTTAATAA chrX:1215174-1215294 19 9.47e-05 AACGCTAGTG TGCAAGCA CTGTTAGGAA chr3L:5828875-5828995 91 9.47e-05 TGTTTATGGG TGCAAGCT TTAAATATTG chr3L:4553499-4553619 15 9.47e-05 TTTGAGCAAT TGCAAGCA GTACTAAACA chr2L:22024566-22024686 7 1.20e-04 AGGACT AGCAAGCT GGAAATTCAA chrX:947648-947768 11 1.20e-04 TTTGCTTGTT AGCAAGCT ACTATTTCGT chr3L:24723874-24723994 71 1.20e-04 CGAAGATAGT AGCAAGCA GCAGTGACCT chr3R:8190980-8191100 78 1.20e-04 ATGGCATGCT AGCAAGCA CTGTGTTGGT chr3R:22639332-22639452 6 1.47e-04 CAATG CGCAAGCG TAACTATGAT chr2L:5461269-5461389 9 1.54e-04 TAGAGAGG TGCGAGGG AGAAGGCCAA chrX:14840626-14840746 7 1.73e-04 ACACAC AGCGAGAA AATATTAAGA chr3R:21446511-21446631 1 1.73e-04 . AGCGAGAT ACCCTTATGG chrX:12496961-12497081 85 1.73e-04 TCCAATTTCA AGCGAGAT AGCTAAATCT chr2L:7871949-7872069 2 1.97e-04 G TGCATGAG TGCACAACAA chr3R:4835400-4835520 78 1.97e-04 ACTGCGCCTA TGCGTGCA TCCCGCTTGC chr2L:18881494-18881614 113 1.97e-04 CTTTTCTGGC AGCAAGCC chr2L:14537547-14537667 6 1.97e-04 TAAAA TGCATGAG AATTCCTTCA chrX:17768258-17768378 1 2.19e-04 . GGCGAGAG AGGCAGTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14131739-14131859 2.1e-06 90_[+2]_22 chrX:21117053-21117173 8.8e-06 32_[+2]_80 chr2R:8018899-8019019 8.8e-06 91_[+2]_21 chr2L:20066264-20066384 8.8e-06 96_[+2]_16 chr3R:18438904-18439024 1.3e-05 85_[+2]_27 chrX:5560670-5560790 1.3e-05 34_[+2]_78 chr3R:6791499-6791619 1.8e-05 89_[+2]_23 chr3R:16948735-16948855 1.8e-05 85_[+2]_27 chr3R:29556089-29556209 2.2e-05 38_[+2]_74 chrX:4411599-4411719 2.2e-05 86_[+2]_26 chrX:9693950-9694070 2.2e-05 77_[+2]_35 chr3R:30912487-30912607 2.2e-05 47_[+2]_65 chrX:8624961-8625081 2.2e-05 110_[+2]_2 chrX:5593991-5594111 2.2e-05 27_[+2]_85 chr3R:8181565-8181685 2.4e-05 5_[+2]_107 chr2L:10989296-10989416 2.4e-05 61_[+2]_51 chr2R:14458119-14458239 2.4e-05 108_[+2]_4 chr2L:1973981-1974101 4.4e-05 49_[+2]_63 chrX:14234179-14234299 4.4e-05 82_[+2]_30 chrX:18404950-18405070 6.3e-05 6_[+2]_106 chr3R:16025866-16025986 6.3e-05 65_[+2]_47 chr2L:16869180-16869300 6.7e-05 111_[+2]_1 chr3R:4852492-4852612 7.4e-05 48_[+2]_64 chr3L:14613972-14614092 7.6e-05 110_[+2]_2 chr3R:18366410-18366530 9.5e-05 45_[+2]_67 chr2L:19430443-19430563 9.5e-05 7_[+2]_105 chrX:17780437-17780557 9.5e-05 10_[+2]_102 chrX:1215174-1215294 9.5e-05 18_[+2]_94 chr3L:5828875-5828995 9.5e-05 90_[+2]_22 chr3L:4553499-4553619 9.5e-05 14_[+2]_98 chr2L:22024566-22024686 0.00012 6_[+2]_106 chrX:947648-947768 0.00012 10_[+2]_102 chr3L:24723874-24723994 0.00012 70_[+2]_42 chr3R:8190980-8191100 0.00012 77_[+2]_35 chr3R:22639332-22639452 0.00015 5_[+2]_107 chr2L:5461269-5461389 0.00015 8_[+2]_104 chrX:14840626-14840746 0.00017 6_[+2]_106 chr3R:21446511-21446631 0.00017 [+2]_112 chrX:12496961-12497081 0.00017 84_[+2]_28 chr2L:7871949-7872069 0.0002 1_[+2]_111 chr3R:4835400-4835520 0.0002 77_[+2]_35 chr2L:18881494-18881614 0.0002 112_[+2] chr2L:14537547-14537667 0.0002 5_[+2]_107 chrX:17768258-17768378 0.00022 [+2]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGCRAGMG width=8 seqs=44 chr3L:14131739-14131859 ( 91) TGCGAGCG 1 chrX:21117053-21117173 ( 33) TGCAAGCG 1 chr2R:8018899-8019019 ( 92) TGCAAGCG 1 chr2L:20066264-20066384 ( 97) TGCAAGCG 1 chr3R:18438904-18439024 ( 86) AGCAAGCG 1 chrX:5560670-5560790 ( 35) AGCAAGCG 1 chr3R:6791499-6791619 ( 90) TGCGAGAG 1 chr3R:16948735-16948855 ( 86) TGCGAGAG 1 chr3R:29556089-29556209 ( 39) AGCGAGAG 1 chrX:4411599-4411719 ( 87) AGCGAGAG 1 chrX:9693950-9694070 ( 78) AGCGAGAG 1 chr3R:30912487-30912607 ( 48) AGCGAGAG 1 chrX:8624961-8625081 ( 111) AGCGAGAG 1 chrX:5593991-5594111 ( 28) AGCGAGAG 1 chr3R:8181565-8181685 ( 6) TGCGTGCG 1 chr2L:10989296-10989416 ( 62) TGCGTGCG 1 chr2R:14458119-14458239 ( 109) TGCGTGCG 1 chr2L:1973981-1974101 ( 50) TGCAAGAG 1 chrX:14234179-14234299 ( 83) TGCAAGAG 1 chrX:18404950-18405070 ( 7) AGCGAGCT 1 chr3R:16025866-16025986 ( 66) AGCGAGCT 1 chr2L:16869180-16869300 ( 112) TGCATGCG 1 chr3R:4852492-4852612 ( 49) AGCATGCG 1 chr3L:14613972-14614092 ( 111) TGCGAGCC 1 chr3R:18366410-18366530 ( 46) TGCAAGCT 1 chr2L:19430443-19430563 ( 8) TGCAAGCA 1 chrX:17780437-17780557 ( 11) TGCAAGCA 1 chrX:1215174-1215294 ( 19) TGCAAGCA 1 chr3L:5828875-5828995 ( 91) TGCAAGCT 1 chr3L:4553499-4553619 ( 15) TGCAAGCA 1 chr2L:22024566-22024686 ( 7) AGCAAGCT 1 chrX:947648-947768 ( 11) AGCAAGCT 1 chr3L:24723874-24723994 ( 71) AGCAAGCA 1 chr3R:8190980-8191100 ( 78) AGCAAGCA 1 chr3R:22639332-22639452 ( 6) CGCAAGCG 1 chr2L:5461269-5461389 ( 9) TGCGAGGG 1 chrX:14840626-14840746 ( 7) AGCGAGAA 1 chr3R:21446511-21446631 ( 1) AGCGAGAT 1 chrX:12496961-12497081 ( 85) AGCGAGAT 1 chr2L:7871949-7872069 ( 2) TGCATGAG 1 chr3R:4835400-4835520 ( 78) TGCGTGCA 1 chr2L:18881494-18881614 ( 113) AGCAAGCC 1 chr2L:14537547-14537667 ( 6) TGCATGAG 1 chrX:17768258-17768378 ( 1) GGCGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 2.4e-001 34 -285 -283 66 -1210 -1210 262 -1210 -1210 260 -1210 -1210 61 -1210 156 -1210 126 -1210 -1210 -87 -1210 -1210 262 -1210 9 190 -283 -1210 -91 -186 186 -87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.4e-001 0.431818 0.022727 0.022727 0.522727 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.522727 0.000000 0.477273 0.000000 0.818182 0.000000 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 0.363636 0.613636 0.022727 0.000000 0.181818 0.045455 0.590909 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCRAGMG MEME-2 regular expression -------------------------------------------------------------------------------- [TA]GC[AG]AG[CA]G -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCCAK MEME-3 width = 8 sites = 29 llr = 260 E-value = 8.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::21::91 pos.-specific C :9::9912 probability G a:191::4 matrix T :17::::3 bits 2.6 * 2.4 * 2.1 * *** 1.8 ** *** Relative 1.6 ** *** Entropy 1.3 ** *** (12.9 bits) 1.0 ** **** 0.8 ** **** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCTGCCAG consensus T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22639533-22639653 55 2.16e-06 TAAAAACAGG GCTGCCAG ACTCATTGAA chr2L:1614203-1614323 27 2.16e-06 AGTGTATAGT GCTGCCAG CTATTTGCAT chr2R:11219357-11219477 103 5.42e-06 CAAATCCAGA GCTGCCAC CTGATTCAAA chrX:8650887-8651007 1 6.47e-06 . GCTGCCCG GCTCTCTACC chr2R:5726936-5727056 13 1.09e-05 TCGCGCATGA GCTGCCAT CCTGCTTGCA chr2R:12636512-12636632 71 1.09e-05 CACGGCCAGT GCTGCCAT TCATAGTAAT chr2R:8018899-8019019 39 1.09e-05 CCGCCGTCCG GCTGCCAT TGGCAATGGG chr2L:10989296-10989416 111 1.09e-05 AGGTGCTCAC GCTGCCAT CT chrX:5312155-5312275 101 1.42e-05 ATTTTGTTTA GCGGCCAC GCGAGAATTC chr3R:4852492-4852612 62 1.79e-05 ATGCGAGGAG GCGGCCAT TTTCTTAGAG chr3L:9968394-9968514 79 2.34e-05 GCACCCACAA GCAGCCAC ACCAATCCCA chrX:9082678-9082798 51 2.34e-05 ACAAAATTGT GCTGGCAG ATAATTTGCC chr3L:6904138-6904258 14 3.55e-05 ACGCATGATA GCAGCCAT TTTGTTTAGT chr3L:17044998-17045118 61 3.55e-05 GTCGCAGATA GTTGCCAG ACCAAATTCG chr3R:16764110-16764230 93 3.55e-05 GCTTTACGGC GCAGCCAT TATGGTGCGC chrX:14593214-14593334 109 3.55e-05 TATACGTAAT GTTGCCAG TATG chr3R:13064255-13064375 79 3.55e-05 AGAAAATGTT GTTGCCAG GCTgtttgcc chr2R:7939130-7939250 16 3.55e-05 GCCTGGCAGG GTTGCCAG CTCACTGCAG chr3R:8181565-8181685 21 4.49e-05 gCGCTAGTAT GCTGGCAC ATACAAGATG chr2L:18881494-18881614 78 4.49e-05 CACTCGCTCT GCGGGCAG CGCTCTCACG chrX:19166434-19166554 2 5.07e-05 A GCAGCCCC GATTAAAGTG chrX:8624961-8625081 99 5.07e-05 ACGCGTTGTT GCTGCGAG TGGGAGCGAG chr3L:9704246-9704366 39 5.07e-05 ATTTCCGACT GCAGCCCC AATTTTCGAT chr3L:16853574-16853694 112 6.83e-05 GCAATTGATA GCTACCAG G chr2L:10858244-10858364 78 6.83e-05 ATAAACCATA GCTACCAG TGCTCAAATC chrX:4425090-4425210 105 6.83e-05 ACACAGTGAA GCCGCCAT ATTGCCGG chrX:9693950-9694070 35 7.06e-05 GCACACCGTT GCGGCCAA AAACAACCAC chr2L:20097296-20097416 67 8.92e-05 CTATCTAAAG GCTGCCCA TGCTAGAAAC chrX:21117053-21117173 69 1.08e-04 ATGGCCGAGT GCTGCAAG AGCCGATAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22639533-22639653 2.2e-06 54_[+3]_58 chr2L:1614203-1614323 2.2e-06 26_[+3]_86 chr2R:11219357-11219477 5.4e-06 102_[+3]_10 chrX:8650887-8651007 6.5e-06 [+3]_112 chr2R:5726936-5727056 1.1e-05 12_[+3]_100 chr2R:12636512-12636632 1.1e-05 70_[+3]_42 chr2R:8018899-8019019 1.1e-05 38_[+3]_74 chr2L:10989296-10989416 1.1e-05 110_[+3]_2 chrX:5312155-5312275 1.4e-05 100_[+3]_12 chr3R:4852492-4852612 1.8e-05 61_[+3]_51 chr3L:9968394-9968514 2.3e-05 78_[+3]_34 chrX:9082678-9082798 2.3e-05 50_[+3]_62 chr3L:6904138-6904258 3.6e-05 13_[+3]_99 chr3L:17044998-17045118 3.6e-05 60_[+3]_52 chr3R:16764110-16764230 3.6e-05 92_[+3]_20 chrX:14593214-14593334 3.6e-05 108_[+3]_4 chr3R:13064255-13064375 3.6e-05 78_[+3]_34 chr2R:7939130-7939250 3.6e-05 15_[+3]_97 chr3R:8181565-8181685 4.5e-05 20_[+3]_92 chr2L:18881494-18881614 4.5e-05 77_[+3]_35 chrX:19166434-19166554 5.1e-05 1_[+3]_111 chrX:8624961-8625081 5.1e-05 98_[+3]_14 chr3L:9704246-9704366 5.1e-05 38_[+3]_74 chr3L:16853574-16853694 6.8e-05 111_[+3]_1 chr2L:10858244-10858364 6.8e-05 77_[+3]_35 chrX:4425090-4425210 6.8e-05 104_[+3]_8 chrX:9693950-9694070 7.1e-05 34_[+3]_78 chr2L:20097296-20097416 8.9e-05 66_[+3]_46 chrX:21117053-21117173 0.00011 68_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCCAK width=8 seqs=29 chr3R:22639533-22639653 ( 55) GCTGCCAG 1 chr2L:1614203-1614323 ( 27) GCTGCCAG 1 chr2R:11219357-11219477 ( 103) GCTGCCAC 1 chrX:8650887-8651007 ( 1) GCTGCCCG 1 chr2R:5726936-5727056 ( 13) GCTGCCAT 1 chr2R:12636512-12636632 ( 71) GCTGCCAT 1 chr2R:8018899-8019019 ( 39) GCTGCCAT 1 chr2L:10989296-10989416 ( 111) GCTGCCAT 1 chrX:5312155-5312275 ( 101) GCGGCCAC 1 chr3R:4852492-4852612 ( 62) GCGGCCAT 1 chr3L:9968394-9968514 ( 79) GCAGCCAC 1 chrX:9082678-9082798 ( 51) GCTGGCAG 1 chr3L:6904138-6904258 ( 14) GCAGCCAT 1 chr3L:17044998-17045118 ( 61) GTTGCCAG 1 chr3R:16764110-16764230 ( 93) GCAGCCAT 1 chrX:14593214-14593334 ( 109) GTTGCCAG 1 chr3R:13064255-13064375 ( 79) GTTGCCAG 1 chr2R:7939130-7939250 ( 16) GTTGCCAG 1 chr3R:8181565-8181685 ( 21) GCTGGCAC 1 chr2L:18881494-18881614 ( 78) GCGGGCAG 1 chrX:19166434-19166554 ( 2) GCAGCCCC 1 chrX:8624961-8625081 ( 99) GCTGCGAG 1 chr3L:9704246-9704366 ( 39) GCAGCCCC 1 chr3L:16853574-16853694 ( 112) GCTACCAG 1 chr2L:10858244-10858364 ( 78) GCTACCAG 1 chrX:4425090-4425210 ( 105) GCCGCCAT 1 chrX:9693950-9694070 ( 35) GCGGCCAA 1 chr2L:20097296-20097416 ( 67) GCTGCCCA 1 chrX:21117053-21117173 ( 69) GCTGCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 8.7e-001 -1150 -1150 262 -1150 -1150 239 -1150 -127 -99 -225 -23 98 -231 -1150 252 -1150 -1150 245 -65 -1150 -330 250 -223 -1150 134 -25 -1150 -1150 -231 33 147 -27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 8.7e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.862069 0.000000 0.137931 0.172414 0.034483 0.137931 0.655172 0.068966 0.000000 0.931034 0.000000 0.000000 0.896552 0.103448 0.000000 0.034483 0.931034 0.034483 0.000000 0.862069 0.137931 0.000000 0.000000 0.068966 0.206897 0.448276 0.275862 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCAK MEME-3 regular expression -------------------------------------------------------------------------------- GCTGCCA[GTC] -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GCDSWGSS MEME-4 width = 8 sites = 30 llr = 264 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::4:3::: pos.-specific C :a131:55 probability G a:272a55 matrix T ::3:4::: bits 2.6 * * 2.4 ** * 2.1 ** * 1.8 ** * Relative 1.6 ** * *** Entropy 1.3 ** * *** (12.7 bits) 1.0 ** * *** 0.8 ** * *** 0.5 ** * *** 0.3 ** * *** 0.0 -------- Multilevel GCAGTGCG consensus TCA GC sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14131739-14131859 55 2.54e-06 GAATGCAGAG GCAGGGCG GTCAACCAGA chrX:14593214-14593334 71 5.64e-06 TTATGGGCCA GCAGTGCG TATACGTAAT chr3L:4627119-4627239 68 5.64e-06 CCATACGACC GCAGTGCG TTTGTATGCG chr2L:18881494-18881614 25 9.73e-06 CTGACGGCCT GCAGGGGG GGGGGAGTTC chr3R:10350046-10350166 71 9.73e-06 GCCACTGGTT GCGGTGCC GTGTATTGTC chrX:4411599-4411719 28 9.73e-06 TGGTCGCCTT GCAGGGGG CGTTGCTTTA chrX:3019706-3019826 8 1.45e-05 AGAAGGT GCAGTGCC TACAAACGGA chr2R:15034890-15035010 30 2.44e-05 ATTAGTCGAA GCTGGGCG GGAATTATCT chr2R:8018899-8019019 113 3.01e-05 CAACCGTATG GCGGAGGG chr3R:18366410-18366530 36 4.06e-05 ATCTCCACTC GCAGAGCC TGTGCAAGCT chrX:8624961-8625081 37 4.06e-05 GGTAAGCAAC GCGCTGCG TCGCGACATT chr3R:5660188-5660308 94 4.95e-05 TGTGTAACTA GCGGAGGC AAAGTACATT chr3R:16948735-16948855 49 4.95e-05 AAGAGTAATG GCGGCGGC ATGGCGCCGC chr2R:18834917-18835037 65 5.79e-05 ACACTGCACA GCAGCGGC TTACTTTCAT chr3R:16764110-16764230 9 5.79e-05 ACGGAGCT GCAGAGGC AGCGACTGCG chr2L:17477848-17477968 8 5.79e-05 ATGGTGA GCACGGGG GAGTGACCAG chrX:17768258-17768378 80 5.79e-05 AGTGGTTGTT GCTGGGGC TGATGAATTT chrX:21117053-21117173 45 6.79e-05 CAAGCGTTTC GCTGTGGC TGACAGATGG chrX:1270708-1270828 2 6.79e-05 A GCACTGGG CTTTCTTGCA chr3R:30912487-30912607 112 6.79e-05 CCTCCCTTTC GCACTGCC G chr3L:9704246-9704366 83 7.16e-05 CCGTCATTAA GCGCTGGC GATTGTTTAG chr3R:8181565-8181685 61 8.49e-05 AGCAGTGCTC GCTGCGGG TGAGAGGGAG chr2R:20903610-20903730 21 8.49e-05 GAGACAGCTA GCTGAGCC CACAGCCATC chr3R:4852492-4852612 16 9.11e-05 TGGACTGAGT GCGCAGCC TCTGTGCTCT chrX:7617073-7617193 54 1.24e-04 tcatttttTT GCTCCGCG GTCTTGCAGG chr3L:6904138-6904258 52 1.24e-04 TCTGGCCATC GCTCAGCG TATAGCCCCG chrX:9693950-9694070 89 1.24e-04 gcgagagctg gctcagcg ctcagtggcg chr3R:9214413-9214533 36 1.24e-04 TCACCACTTA GCCGTGGC ATAAACCTTT chr2R:14645077-14645197 101 1.36e-04 AGCTTTCTTC GCCCTGCG TAAGACAGCT chr3L:24723874-24723994 27 1.57e-04 CCTTTAGGGT GGAGTGCG AATGAAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14131739-14131859 2.5e-06 54_[+4]_58 chrX:14593214-14593334 5.6e-06 70_[+4]_42 chr3L:4627119-4627239 5.6e-06 67_[+4]_45 chr2L:18881494-18881614 9.7e-06 24_[+4]_88 chr3R:10350046-10350166 9.7e-06 70_[+4]_42 chrX:4411599-4411719 9.7e-06 27_[+4]_85 chrX:3019706-3019826 1.4e-05 7_[+4]_105 chr2R:15034890-15035010 2.4e-05 29_[+4]_83 chr2R:8018899-8019019 3e-05 112_[+4] chr3R:18366410-18366530 4.1e-05 35_[+4]_77 chrX:8624961-8625081 4.1e-05 36_[+4]_76 chr3R:5660188-5660308 4.9e-05 93_[+4]_19 chr3R:16948735-16948855 4.9e-05 48_[+4]_64 chr2R:18834917-18835037 5.8e-05 64_[+4]_48 chr3R:16764110-16764230 5.8e-05 8_[+4]_104 chr2L:17477848-17477968 5.8e-05 7_[+4]_105 chrX:17768258-17768378 5.8e-05 79_[+4]_33 chrX:21117053-21117173 6.8e-05 44_[+4]_68 chrX:1270708-1270828 6.8e-05 1_[+4]_111 chr3R:30912487-30912607 6.8e-05 111_[+4]_1 chr3L:9704246-9704366 7.2e-05 82_[+4]_30 chr3R:8181565-8181685 8.5e-05 60_[+4]_52 chr2R:20903610-20903730 8.5e-05 20_[+4]_92 chr3R:4852492-4852612 9.1e-05 15_[+4]_97 chrX:7617073-7617193 0.00012 53_[+4]_59 chr3L:6904138-6904258 0.00012 51_[+4]_61 chrX:9693950-9694070 0.00012 88_[+4]_24 chr3R:9214413-9214533 0.00012 35_[+4]_77 chr2R:14645077-14645197 0.00014 100_[+4]_12 chr3L:24723874-24723994 0.00016 26_[+4]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDSWGSS width=8 seqs=30 chr3L:14131739-14131859 ( 55) GCAGGGCG 1 chrX:14593214-14593334 ( 71) GCAGTGCG 1 chr3L:4627119-4627239 ( 68) GCAGTGCG 1 chr2L:18881494-18881614 ( 25) GCAGGGGG 1 chr3R:10350046-10350166 ( 71) GCGGTGCC 1 chrX:4411599-4411719 ( 28) GCAGGGGG 1 chrX:3019706-3019826 ( 8) GCAGTGCC 1 chr2R:15034890-15035010 ( 30) GCTGGGCG 1 chr2R:8018899-8019019 ( 113) GCGGAGGG 1 chr3R:18366410-18366530 ( 36) GCAGAGCC 1 chrX:8624961-8625081 ( 37) GCGCTGCG 1 chr3R:5660188-5660308 ( 94) GCGGAGGC 1 chr3R:16948735-16948855 ( 49) GCGGCGGC 1 chr2R:18834917-18835037 ( 65) GCAGCGGC 1 chr3R:16764110-16764230 ( 9) GCAGAGGC 1 chr2L:17477848-17477968 ( 8) GCACGGGG 1 chrX:17768258-17768378 ( 80) GCTGGGGC 1 chrX:21117053-21117173 ( 45) GCTGTGGC 1 chrX:1270708-1270828 ( 2) GCACTGGG 1 chr3R:30912487-30912607 ( 112) GCACTGCC 1 chr3L:9704246-9704366 ( 83) GCGCTGGC 1 chr3R:8181565-8181685 ( 61) GCTGCGGG 1 chr2R:20903610-20903730 ( 21) GCTGAGCC 1 chr3R:4852492-4852612 ( 16) GCGCAGCC 1 chrX:7617073-7617193 ( 54) GCTCCGCG 1 chr3L:6904138-6904258 ( 52) GCTCAGCG 1 chrX:9693950-9694070 ( 89) GCTCAGCG 1 chr3R:9214413-9214533 ( 36) GCCGTGGC 1 chr2R:14645077-14645197 ( 101) GCCCTGCG 1 chr3L:24723874-24723994 ( 27) GGAGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 1.2e+000 -1155 -1155 262 -1155 -1155 255 -228 -1155 34 -130 52 -31 -1155 102 204 -1155 -36 -30 30 27 -1155 -1155 262 -1155 -1155 170 152 -1155 -1155 150 172 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.2e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.966667 0.033333 0.000000 0.433333 0.066667 0.233333 0.266667 0.000000 0.333333 0.666667 0.000000 0.266667 0.133333 0.200000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.533333 0.466667 0.000000 0.000000 0.466667 0.533333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDSWGSS MEME-4 regular expression -------------------------------------------------------------------------------- GC[ATG][GC][TAG]G[CG][GC] -------------------------------------------------------------------------------- Time 26.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTCDC MEME-5 width = 8 sites = 14 llr = 143 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:::::3: pos.-specific C :a:9:a19 probability G 9:::::41 matrix T ::a1a:2: bits 2.6 * * 2.4 * * 2.1 * * * * 1.8 ** * * * Relative 1.6 ****** * Entropy 1.3 ****** * (14.7 bits) 1.0 ****** * 0.8 ****** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel GCTCTCGC consensus A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11529616-11529736 13 2.14e-06 TGTCTCACTC GCTCTCGC ACTGTGCGCT chr3R:16764110-16764230 77 2.14e-06 CGCTCGGATC GCTCTCGC TTTACGGCGC chrX:17768258-17768378 113 2.14e-06 TCGCTCGCAC GCTCTCGC chr2R:5726936-5727056 48 6.66e-06 TCATTCCGCA GCTCTCAC GTAGTGGCAA chr2L:5403686-5403806 81 6.66e-06 GCAACAAAAG GCTCTCAC TCAAATACGG chr2L:18881494-18881614 87 6.66e-06 TGCGGGCAGC GCTCTCAC GCTCCGTCCT chrX:8650887-8651007 74 1.11e-05 TCAGTATTtc gctctctc tctctctctc chrX:4426918-4427038 63 1.11e-05 CAACACTCTC GCTCTCTC GCTTGCACCG chr3R:4835400-4835520 94 1.53e-05 CATCCCGCTT GCTCTCCC GTCCGCATTC chr2R:14458119-14458239 96 1.99e-05 AAGCTTTCTC ACTCTCGC CCGTGTGCGT chrX:19522784-19522904 101 1.99e-05 CCAAGCGCAC ACTCTCGC CAAACGCGGT chr3R:21446511-21446631 41 2.43e-05 GCTCTGCTCG GCTCTCAG CACCAATCGG chr3L:6904138-6904258 108 2.86e-05 CGTCTGCGTT GCTCTCTG GCAAC chr3L:6969192-6969312 7 3.29e-05 TATTAA GCTTTCGC ATTAACGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11529616-11529736 2.1e-06 12_[+5]_100 chr3R:16764110-16764230 2.1e-06 76_[+5]_36 chrX:17768258-17768378 2.1e-06 112_[+5] chr2R:5726936-5727056 6.7e-06 47_[+5]_65 chr2L:5403686-5403806 6.7e-06 80_[+5]_32 chr2L:18881494-18881614 6.7e-06 86_[+5]_26 chrX:8650887-8651007 1.1e-05 73_[+5]_39 chrX:4426918-4427038 1.1e-05 62_[+5]_50 chr3R:4835400-4835520 1.5e-05 93_[+5]_19 chr2R:14458119-14458239 2e-05 95_[+5]_17 chrX:19522784-19522904 2e-05 100_[+5]_12 chr3R:21446511-21446631 2.4e-05 40_[+5]_72 chr3L:6904138-6904258 2.9e-05 107_[+5]_5 chr3L:6969192-6969312 3.3e-05 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTCDC width=8 seqs=14 chr2R:11529616-11529736 ( 13) GCTCTCGC 1 chr3R:16764110-16764230 ( 77) GCTCTCGC 1 chrX:17768258-17768378 ( 113) GCTCTCGC 1 chr2R:5726936-5727056 ( 48) GCTCTCAC 1 chr2L:5403686-5403806 ( 81) GCTCTCAC 1 chr2L:18881494-18881614 ( 87) GCTCTCAC 1 chrX:8650887-8651007 ( 74) GCTCTCTC 1 chrX:4426918-4427038 ( 63) GCTCTCTC 1 chr3R:4835400-4835520 ( 94) GCTCTCCC 1 chr2R:14458119-14458239 ( 96) ACTCTCGC 1 chrX:19522784-19522904 ( 101) ACTCTCGC 1 chr3R:21446511-21446631 ( 41) GCTCTCAG 1 chr3L:6904138-6904258 ( 108) GCTCTCTG 1 chr3L:6969192-6969312 ( 7) GCTTTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 3.0e+002 -126 -1045 240 -1045 -1045 260 -1045 -1045 -1045 -1045 -1045 159 -1045 250 -1045 -221 -1045 -1045 -1045 159 -1045 260 -1045 -1045 -26 -120 140 -63 -1045 238 -18 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.0e+002 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.071429 0.428571 0.214286 0.000000 0.857143 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCDC MEME-5 regular expression -------------------------------------------------------------------------------- GCTCTC[GAT]C -------------------------------------------------------------------------------- Time 32.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4627119-4627239 3.09e-03 67_[+4(5.64e-06)]_45 chrX:19522784-19522904 1.20e-03 100_[+5(1.99e-05)]_12 chr2R:11219357-11219477 5.00e-03 102_[+3(5.42e-06)]_10 chrX:5560670-5560790 2.44e-05 34_[+2(1.34e-05)]_28_[+1(1.86e-05)]_\ 42 chr3L:7916322-7916442 3.52e-01 120 chr3R:9214413-9214533 2.99e-01 120 chr4:989527-989647 9.64e-02 120 chrX:9250239-9250359 1.26e-01 120 chr2R:14458119-14458239 2.39e-07 13_[+5(2.14e-06)]_66_[+5(8.08e-05)]_\ 2_[+1(1.20e-05)]_3_[+2(2.43e-05)]_4 chr2R:24337624-24337744 1.27e-02 120 chrX:7706623-7706743 4.96e-01 120 chr2L:10989296-10989416 3.00e-06 61_[+2(2.43e-05)]_41_[+3(1.09e-05)]_\ 2 chr3R:8190980-8191100 1.42e-05 94_[+1(9.81e-06)]_18 chr2L:20066264-20066384 2.80e-03 96_[+2(8.77e-06)]_16 chr3L:10893608-10893728 6.46e-01 120 chr2R:22420670-22420790 9.95e-01 120 chr3R:18438904-18439024 5.59e-03 85_[+2(1.34e-05)]_27 chr2R:6219976-6220096 9.14e-01 120 chr3R:14308855-14308975 3.48e-01 120 chr3R:12431061-12431181 9.45e-02 120 chr2R:8018899-8019019 1.21e-07 7_[+1(2.83e-05)]_23_[+3(1.09e-05)]_\ 28_[+1(4.85e-05)]_9_[+2(8.77e-06)]_13_[+4(3.01e-05)] chrX:5593991-5594111 7.22e-06 27_[+2(2.23e-05)]_63_[+1(2.61e-05)]_\ 14 chrX:17768258-17768378 3.00e-07 79_[+4(5.79e-05)]_13_[+1(9.81e-06)]_\ 4_[+5(2.14e-06)] chr3L:4553499-4553619 4.31e-03 14_[+2(9.47e-05)]_36_[+2(9.47e-05)]_\ 54 chr3R:13964631-13964751 3.94e-01 120 chr3R:4852492-4852612 2.81e-07 15_[+4(9.11e-05)]_25_[+2(7.40e-05)]_\ 5_[+3(1.79e-05)]_11_[+1(3.27e-05)]_[+1(7.77e-05)]_24 chr2R:20903610-20903730 3.64e-03 20_[+4(8.49e-05)]_92 chr3L:1295763-1295883 5.93e-02 120 chr3L:5828875-5828995 8.64e-02 90_[+2(9.47e-05)]_22 chr3L:16808251-16808371 5.83e-02 120 chrX:3455575-3455695 1.97e-01 120 chr3R:13446652-13446772 2.40e-01 120 chr2R:7939130-7939250 2.75e-04 15_[+3(3.55e-05)]_97 chrX:12496961-12497081 1.16e-01 120 chr3L:10796090-10796210 5.74e-01 120 chr2R:9711939-9712059 1.00e+00 120 chr3R:23820432-23820552 1.95e-01 120 chr3R:12562127-12562247 9.98e-01 120 chr3R:20824231-20824351 7.79e-01 120 chr3L:4355388-4355508 9.86e-01 120 chrX:14234179-14234299 4.94e-04 82_[+2(4.45e-05)]_30 chr3L:18227483-18227603 8.32e-01 120 chr2L:4286236-4286356 6.86e-01 120 chr3L:10428902-10429022 1.00e+00 120 chr3L:3786929-3787049 6.74e-01 120 chr3R:4311241-4311361 9.87e-01 120 chr2L:14537547-14537667 1.12e-01 120 chr3L:9704246-9704366 2.21e-03 38_[+3(5.07e-05)]_36_[+4(7.16e-05)]_\ 30 chr3R:13064255-13064375 1.31e-04 78_[+3(3.55e-05)]_34 chr3R:9237920-9238040 5.39e-01 120 chr3L:4242554-4242674 1.48e-01 120 chrX:8624961-8625081 2.57e-06 36_[+4(4.06e-05)]_54_[+3(5.07e-05)]_\ 4_[+2(2.23e-05)]_2 chrX:4425090-4425210 5.50e-03 104_[+3(6.83e-05)]_8 chrX:6255555-6255675 9.98e-01 120 chr2R:18374574-18374694 1.00e+00 120 chr3R:16215052-16215172 8.79e-01 120 chr3R:30912487-30912607 2.29e-05 11_[+1(2.18e-05)]_28_[+2(2.23e-05)]_\ 56_[+4(6.79e-05)]_1 chr3L:11278938-11279058 6.68e-01 120 chr3R:16948735-16948855 7.05e-05 28_[+2(2.23e-05)]_12_[+4(4.95e-05)]_\ 16_[+4(6.79e-05)]_5_[+2(1.77e-05)]_27 chr3L:16825325-16825445 9.86e-01 120 chr3L:14328501-14328621 9.86e-01 120 chrX:1215174-1215294 5.35e-03 18_[+2(9.47e-05)]_94 chr2R:8759571-8759691 9.54e-01 120 chrX:12225447-12225567 9.65e-01 120 chr3R:21134005-21134125 9.64e-01 120 chrX:17780437-17780557 1.92e-02 10_[+2(9.47e-05)]_102 chr2R:12344821-12344941 2.17e-01 120 chrX:5312155-5312275 3.13e-05 29_[+5(8.94e-05)]_47_[+3(6.83e-05)]_\ 8_[+3(1.42e-05)]_12 chr2R:12140458-12140578 2.90e-01 120 chrX:14593214-14593334 1.59e-03 70_[+4(5.64e-06)]_30_[+3(3.55e-05)]_\ 4 chrX:9082678-9082798 3.38e-02 50_[+3(2.34e-05)]_62 chr2L:19430443-19430563 6.75e-02 7_[+2(9.47e-05)]_105 chrX:9693950-9694070 1.40e-05 34_[+3(7.06e-05)]_25_[+2(2.23e-05)]_\ 2_[+2(2.23e-05)]_35 chr3L:15275610-15275730 9.99e-01 120 chr3R:21446511-21446631 1.87e-05 26_[+1(9.81e-06)]_6_[+5(2.43e-05)]_\ 72 chr3L:7510818-7510938 8.79e-01 120 chr2L:5446003-5446123 7.75e-01 120 chr2L:17477848-17477968 3.31e-02 7_[+4(5.79e-05)]_105 chr2R:5293865-5293985 1.98e-01 120 chr2L:7306904-7307024 4.19e-04 78_[+1(2.18e-05)]_34 chrX:13320808-13320928 7.23e-01 120 chr3L:3437213-3437333 9.74e-01 120 chrX:4411599-4411719 1.95e-05 27_[+4(9.73e-06)]_22_[+1(7.77e-05)]_\ 21_[+2(2.23e-05)]_26 chr3L:19073980-19074100 9.92e-01 120 chrX:18837184-18837304 1.50e-01 120 chrX:15066572-15066692 9.66e-01 120 chr3R:10350046-10350166 1.62e-03 70_[+4(9.73e-06)]_42 chr2L:6819585-6819705 3.19e-01 120 chr2L:17588783-17588903 1.00e+00 120 chr3L:6969192-6969312 6.36e-02 6_[+5(3.29e-05)]_106 chr3R:21613062-21613182 8.86e-01 120 chr3L:110095-110215 5.16e-01 120 chrX:3109031-3109151 5.14e-01 120 chr2R:11602005-11602125 9.93e-01 120 chrX:13296850-13296970 9.05e-01 120 chrX:7968444-7968564 6.29e-01 120 chr2R:12636512-12636632 1.22e-02 70_[+3(1.09e-05)]_42 chr3R:22639332-22639452 3.29e-02 120 chr3R:9039590-9039710 6.16e-01 120 chrX:12631387-12631507 9.96e-01 120 chr3R:10520666-10520786 9.81e-01 120 chr2L:1973981-1974101 1.69e-02 49_[+2(4.45e-05)]_63 chr2L:16869180-16869300 2.06e-01 111_[+2(6.74e-05)]_1 chr2L:18881494-18881614 1.11e-08 24_[+4(9.73e-06)]_30_[+1(3.27e-05)]_\ 7_[+3(4.49e-05)]_1_[+5(6.66e-06)]_26 chr3L:8951142-8951262 1.00e+00 120 chrX:19521992-19522112 1.50e-01 120 chr3L:3078572-3078692 9.13e-01 120 chr3L:16842160-16842280 1.00e+00 120 chrX:19964347-19964467 5.25e-01 120 chr3R:4835400-4835520 1.28e-04 93_[+5(1.53e-05)]_8_[+1(7.77e-05)]_\ 3 chr3R:8867815-8867935 9.93e-01 120 chr2R:10439075-10439195 9.78e-01 120 chr3R:26014362-26014482 4.72e-01 120 chr2R:20257436-20257556 9.99e-01 120 chrX:15890275-15890395 9.72e-01 120 chr3R:5660188-5660308 1.74e-01 93_[+4(4.95e-05)]_19 chr3R:13078429-13078549 8.20e-02 120 chr3L:18402655-18402775 8.90e-01 120 chr2R:10681389-10681509 2.69e-01 120 chr3R:16764110-16764230 3.11e-08 8_[+4(5.79e-05)]_7_[+4(7.16e-05)]_\ 32_[+1(9.81e-06)]_5_[+5(2.14e-06)]_8_[+3(3.55e-05)]_20 chr3R:6657484-6657604 9.32e-01 120 chr2R:10075628-10075748 5.10e-02 120 chr2L:1614203-1614323 1.13e-04 26_[+3(2.16e-06)]_17_[+3(6.83e-05)]_\ 21_[+3(5.07e-05)]_32 chr2R:20327000-20327120 9.92e-01 120 chr3R:8181565-8181685 1.04e-06 5_[+2(2.43e-05)]_7_[+3(4.49e-05)]_\ 11_[+1(6.22e-05)]_13_[+4(8.49e-05)]_52 chr3R:15129054-15129174 4.08e-01 120 chrX:3019706-3019826 7.11e-02 7_[+4(1.45e-05)]_105 chr3R:12350664-12350784 1.82e-01 120 chr3L:3770940-3771060 2.08e-02 120 chr3R:22639533-22639653 1.24e-04 54_[+3(2.16e-06)]_25_[+3(6.83e-05)]_\ 25 chrX:8445018-8445138 9.98e-01 120 chr2L:18484811-18484931 6.98e-01 120 chr3R:15139642-15139762 8.30e-02 120 chr2L:5403686-5403806 1.63e-06 19_[+1(3.38e-05)]_4_[+1(2.14e-06)]_\ 41_[+5(6.66e-06)]_23_[+1(9.81e-06)]_1 chr3L:10767272-10767392 9.95e-01 120 chr3L:17044998-17045118 1.53e-02 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************