******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Clk.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:7835231-7835351 1.0000 120 chrX:2685022-2685142 1.0000 120 chr3L:9376677-9376797 1.0000 120 chr2L:5301327-5301447 1.0000 120 chr3R:11961141-11961261 1.0000 120 chr3R:21296899-21297019 1.0000 120 chr3L:5750068-5750188 1.0000 120 chr3L:7772304-7772424 1.0000 120 chr2L:1114424-1114544 1.0000 120 chr2L:5303299-5303419 1.0000 120 chr3R:9946631-9946751 1.0000 120 chr3R:6583412-6583532 1.0000 120 chr3R:18546273-18546393 1.0000 120 chr3R:27561271-27561391 1.0000 120 chr3L:5751676-5751796 1.0000 120 chr3L:12050039-12050159 1.0000 120 chr2L:20674877-20674997 1.0000 120 chr2R:9428820-9428940 1.0000 120 chr2L:3507307-3507427 1.0000 120 chr2R:19300099-19300219 1.0000 120 chr2L:6077431-6077551 1.0000 120 chr3L:7775649-7775769 1.0000 120 chr3L:9095770-9095890 1.0000 120 chr3L:17000483-17000603 1.0000 120 chr2R:12279546-12279666 1.0000 120 chr3R:10081595-10081715 1.0000 120 chr2R:18515686-18515806 1.0000 120 chr2L:1124377-1124497 1.0000 120 chr3R:14070230-14070350 1.0000 120 chr3L:7833775-7833895 1.0000 120 chr3R:15244942-15245062 1.0000 120 chr3L:17401058-17401178 1.0000 120 chr3R:9011835-9011955 1.0000 120 chr2R:13592019-13592139 1.0000 120 chr3R:28025333-28025453 1.0000 120 chr3R:9010796-9010916 1.0000 120 chr3R:21195670-21195790 1.0000 120 chr3L:3195933-3196053 1.0000 120 chr2R:10799826-10799946 1.0000 120 chr3R:11762585-11762705 1.0000 120 chr3R:7947467-7947587 1.0000 120 chr2R:23997238-23997358 1.0000 120 chr3R:30915379-30915499 1.0000 120 chr2L:6080479-6080599 1.0000 120 chr3R:8818190-8818310 1.0000 120 chr3R:9931752-9931872 1.0000 120 chr3R:29905640-29905760 1.0000 120 chr3L:5750312-5750432 1.0000 120 chr3R:31216341-31216461 1.0000 120 chr3R:18582381-18582501 1.0000 120 chr3L:1628554-1628674 1.0000 120 chr2L:1970813-1970933 1.0000 120 chr3R:20958601-20958721 1.0000 120 chr3R:8119203-8119323 1.0000 120 chr3L:5640280-5640400 1.0000 120 chr3R:18581136-18581256 1.0000 120 chr2R:15815138-15815258 1.0000 120 chr3L:7773677-7773797 1.0000 120 chr3L:14819530-14819650 1.0000 120 chr3R:27580415-27580535 1.0000 120 chr3R:20549058-20549178 1.0000 120 chr3R:26260947-26261067 1.0000 120 chr3R:15402755-15402875 1.0000 120 chr3L:12517749-12517869 1.0000 120 chr3L:9059898-9060018 1.0000 120 chr3L:10110570-10110690 1.0000 120 chr3R:9075093-9075213 1.0000 120 chr3R:8712185-8712305 1.0000 120 chr3L:11534477-11534597 1.0000 120 chr3R:11756146-11756266 1.0000 120 chr2R:8151840-8151960 1.0000 120 chr3R:18438339-18438459 1.0000 120 chr2R:21649108-21649228 1.0000 120 chr3R:13714271-13714391 1.0000 120 chr2R:10553817-10553937 1.0000 120 chr2L:13049303-13049423 1.0000 120 chr3R:9969375-9969495 1.0000 120 chr3L:9066609-9066729 1.0000 120 chr3L:1612269-1612389 1.0000 120 chr2R:7731393-7731513 1.0000 120 chr2R:6648918-6649038 1.0000 120 chr2R:16617535-16617655 1.0000 120 chrX:15313912-15314032 1.0000 120 chr3R:29756239-29756359 1.0000 120 chr2R:21236767-21236887 1.0000 120 chr3R:29775986-29776106 1.0000 120 chr2L:3044775-3044895 1.0000 120 chr3R:24566915-24567035 1.0000 120 chr3R:9950152-9950272 1.0000 120 chr2L:6872535-6872655 1.0000 120 chr3R:5270932-5271052 1.0000 120 chr2L:5289140-5289260 1.0000 120 chrX:9675035-9675155 1.0000 120 chr3L:19044998-19045118 1.0000 120 chr2R:9745352-9745472 1.0000 120 chr2L:20881820-20881940 1.0000 120 chr3L:22837974-22838094 1.0000 120 chr3L:8519441-8519561 1.0000 120 chr2R:17857178-17857298 1.0000 120 chr2R:11894233-11894353 1.0000 120 chr3R:8111956-8112076 1.0000 120 chr2L:11845256-11845376 1.0000 120 chr3L:17933183-17933303 1.0000 120 chr3L:9466738-9466858 1.0000 120 chr3L:2800492-2800612 1.0000 120 chr3L:12409508-12409628 1.0000 120 chr2R:21409693-21409813 1.0000 120 chr2R:13009356-13009476 1.0000 120 chr3R:14680502-14680622 1.0000 120 chr2L:16672451-16672571 1.0000 120 chr3R:21157271-21157391 1.0000 120 chr2R:22180409-22180529 1.0000 120 chr2R:10272884-10273004 1.0000 120 chr3L:19504840-19504960 1.0000 120 chr3L:2433353-2433473 1.0000 120 chr3L:9469227-9469347 1.0000 120 chr3L:14006798-14006918 1.0000 120 chr2L:13156456-13156576 1.0000 120 chr3L:766425-766545 1.0000 120 chr3L:7836762-7836882 1.0000 120 chr2L:8087400-8087520 1.0000 120 chr3L:5807523-5807643 1.0000 120 chr3R:14056101-14056221 1.0000 120 chr3R:23384939-23385059 1.0000 120 chr3R:4706227-4706347 1.0000 120 chr2L:19433504-19433624 1.0000 120 chrX:12721450-12721570 1.0000 120 chr3R:25855736-25855856 1.0000 120 chr2R:9184637-9184757 1.0000 120 chr3L:7772503-7772623 1.0000 120 chr3L:17006467-17006587 1.0000 120 chr3L:1968194-1968314 1.0000 120 chr2L:16319920-16320040 1.0000 120 chr2R:16138852-16138972 1.0000 120 chr2R:9544179-9544299 1.0000 120 chr2R:6993982-6994102 1.0000 120 chr2L:2749553-2749673 1.0000 120 chr2L:7952013-7952133 1.0000 120 chrX:3447771-3447891 1.0000 120 chr3R:24651209-24651329 1.0000 120 chr3R:21295071-21295191 1.0000 120 chrX:3675750-3675870 1.0000 120 chr2L:18459819-18459939 1.0000 120 chr2L:3505045-3505165 1.0000 120 chr3R:23164274-23164394 1.0000 120 chr3L:21524225-21524345 1.0000 120 chr3L:11531436-11531556 1.0000 120 chr3R:25589309-25589429 1.0000 120 chr3R:23139622-23139742 1.0000 120 chr3L:17049909-17050029 1.0000 120 chr3R:20785014-20785134 1.0000 120 chr3R:8815208-8815328 1.0000 120 chr2L:13461027-13461147 1.0000 120 chr3R:13819157-13819277 1.0000 120 chr2R:9577432-9577552 1.0000 120 chr3L:882115-882235 1.0000 120 chr3R:23067453-23067573 1.0000 120 chr3R:21180532-21180652 1.0000 120 chr2R:7805603-7805723 1.0000 120 chr3R:16011788-16011908 1.0000 120 chr3R:5086651-5086771 1.0000 120 chr3L:17007316-17007436 1.0000 120 chr2R:20999387-20999507 1.0000 120 chr3R:30102883-30103003 1.0000 120 chrX:2107958-2108078 1.0000 120 chr2R:9189360-9189480 1.0000 120 chr2R:22373619-22373739 1.0000 120 chr2L:3372538-3372658 1.0000 120 chr2L:8084403-8084523 1.0000 120 chr3R:29717647-29717767 1.0000 120 chr2L:3880247-3880367 1.0000 120 chr3L:11656256-11656376 1.0000 120 chr3R:5063291-5063411 1.0000 120 chr2L:11806150-11806270 1.0000 120 chr3L:21322024-21322144 1.0000 120 chr2L:3479769-3479889 1.0000 120 chr3R:21584757-21584877 1.0000 120 chr2L:2900742-2900862 1.0000 120 chr3L:7721712-7721832 1.0000 120 chr3L:16714288-16714408 1.0000 120 chr2L:18965660-18965780 1.0000 120 chr2L:4965516-4965636 1.0000 120 chr3L:17956500-17956620 1.0000 120 chr2L:1122090-1122210 1.0000 120 chr3L:10332192-10332312 1.0000 120 chr2R:11205380-11205500 1.0000 120 chr3L:17431298-17431418 1.0000 120 chr3R:14020617-14020737 1.0000 120 chr3L:10325411-10325531 1.0000 120 chr2L:20083626-20083746 1.0000 120 chr2L:2956436-2956556 1.0000 120 chr2L:19054371-19054491 1.0000 120 chr2R:12871878-12871998 1.0000 120 chr2R:16856881-16857001 1.0000 120 chrX:15314115-15314235 1.0000 120 chr2R:6115383-6115503 1.0000 120 chr3L:1880855-1880975 1.0000 120 chrX:10757744-10757864 1.0000 120 chr3L:12798829-12798949 1.0000 120 chr3L:17956744-17956864 1.0000 120 chr3L:11242855-11242975 1.0000 120 chr2R:9843516-9843636 1.0000 120 chr3R:30151643-30151763 1.0000 120 chr2R:14185282-14185402 1.0000 120 chr2R:15817997-15818117 1.0000 120 chr2R:21313212-21313332 1.0000 120 chr3R:4911173-4911293 1.0000 120 chr3R:20311043-20311163 1.0000 120 chrX:21519467-21519587 1.0000 120 chrX:9639116-9639236 1.0000 120 chrX:12667772-12667892 1.0000 120 chrX:13936338-13936458 1.0000 120 chr3L:3038244-3038364 1.0000 120 chr2R:16660129-16660249 1.0000 120 chr2L:6081341-6081461 1.0000 120 chr3L:16981409-16981529 1.0000 120 chr3R:22781608-22781728 1.0000 120 chr3L:10681875-10681995 1.0000 120 chrX:10927297-10927417 1.0000 120 chr3R:21193830-21193950 1.0000 120 chr3L:17612359-17612479 1.0000 120 chr3L:11365626-11365746 1.0000 120 chr2L:5305370-5305490 1.0000 120 chr3R:30802936-30803056 1.0000 120 chr3R:20782875-20782995 1.0000 120 chr2L:12045159-12045279 1.0000 120 chrX:7069134-7069254 1.0000 120 chr2L:13839058-13839178 1.0000 120 chr3L:16148150-16148270 1.0000 120 chr3R:27925124-27925244 1.0000 120 chr3R:31218557-31218677 1.0000 120 chr2L:5242608-5242728 1.0000 120 chr3L:3320167-3320287 1.0000 120 chr3L:12804608-12804728 1.0000 120 chr3L:7529431-7529551 1.0000 120 chr2R:10395579-10395699 1.0000 120 chr3L:9065073-9065193 1.0000 120 chr3R:7821746-7821866 1.0000 120 chr2L:3478066-3478186 1.0000 120 chr3R:26259094-26259214 1.0000 120 chr2L:18936273-18936393 1.0000 120 chr2L:2362987-2363107 1.0000 120 chr2R:24295164-24295284 1.0000 120 chr3R:10863002-10863122 1.0000 120 chr2L:13190700-13190820 1.0000 120 chr3L:20386140-20386260 1.0000 120 chr3R:15993214-15993334 1.0000 120 chr3L:11292469-11292589 1.0000 120 chr3R:29064775-29064895 1.0000 120 chr3L:22839871-22839991 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Clk/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Clk.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.232 G 0.224 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.232 G 0.224 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGSGGSGG MEME-1 width = 8 sites = 27 llr = 250 E-value = 8.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C ::6::6:: probability G 7a4aa3aa matrix T 3:1::1:: bits 2.2 * ** ** 1.9 * ** ** 1.7 * ** ** 1.5 * ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ** ** (13.4 bits) 0.9 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGG consensus T G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3038244-3038364 8 6.80e-06 caacaac ggcggcgg cagcgacagc chr2L:7952013-7952133 108 6.80e-06 TGTTGTAAGG GGCGGCGG GTGAG chr3L:17006467-17006587 8 6.80e-06 GATACGA GGCGGCGG CAGGCAGTGG chr3L:5807523-5807643 41 6.80e-06 TCATTGAAGA GGCGGCGG CCAGGGGCCG chr2R:17857178-17857298 34 6.80e-06 ATGCCTATAC GGCGGCGG CTACAGCCAC chr3L:12517749-12517869 77 6.80e-06 cggcggcagc ggcggcgg cggtggAAAC chr3R:9010796-9010916 22 6.80e-06 CATCTCTCCT GGCGGCGG ACGTCCGCTG chr3R:15244942-15245062 18 6.80e-06 CTTCGATCTG GGCGGCGG CACCTTCGAT chr3L:7529431-7529551 49 1.34e-05 GTTTGCGAGG GGGGGCGG ATGAGTAATG chr2L:3479769-3479889 93 1.34e-05 GGGCTTTTTG GGGGGCGG TACACATGTT chrX:3675750-3675870 1 2.63e-05 . GGGGGGGG TGGTATTAGT chr3L:1968194-1968314 49 2.63e-05 GAAATCGAGG GGGGGGGG GCAACTCCGC chr3R:27580415-27580535 21 2.63e-05 TGGGAGGGGG GGGGGGGG CTGTGTTGTC chr3R:8119203-8119323 50 2.63e-05 GATGATGGGA GGGGGGGG AGGGGGTGGC chr2L:5289140-5289260 20 3.45e-05 GAAATTTCTG TGCGGCGG CCAAAAAAAG chr3R:9931752-9931872 73 3.45e-05 GAGGTCGCGT TGCGGCGG AGAGGGGTTT chr3L:17612359-17612479 97 4.25e-05 TGTTTACAGT TGGGGCGG CACTGGGCTA chrX:7069134-7069254 35 5.05e-05 ATGGGTATTT TGCGGGGG GCTTAGGTGG chr2R:16856881-16857001 5 5.05e-05 TTAC TGCGGGGG TGGCGAAAGC chr3R:9946631-9946751 44 5.05e-05 TTACACCGAG TGCGGGGG GTGAGGGGAC chr3L:17401058-17401178 106 5.82e-05 ACCCCCCTTT TGGGGGGG CCAGGGG chr3L:16981409-16981529 66 8.21e-05 CGCAGCGGAG ggcggagg agccggtggg chr2L:6081341-6081461 1 8.21e-05 . GGTGGCGG AGAGGATACC chr2L:5303299-5303419 102 8.21e-05 CGGATTGCCG GGTGGCGG GATTGCTGGA chr2L:18965660-18965780 47 9.75e-05 ATATTTGAAT GGGGGAGG AAACTGCGAG chr3R:18581136-18581256 31 9.75e-05 GGAAAGGGGA GGGGGTGG AAAAAACAGT chr3R:30915379-30915499 113 1.34e-04 GGTTCGGGGG TGCGGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3038244-3038364 6.8e-06 7_[+1]_105 chr2L:7952013-7952133 6.8e-06 107_[+1]_5 chr3L:17006467-17006587 6.8e-06 7_[+1]_105 chr3L:5807523-5807643 6.8e-06 40_[+1]_72 chr2R:17857178-17857298 6.8e-06 33_[+1]_79 chr3L:12517749-12517869 6.8e-06 76_[+1]_36 chr3R:9010796-9010916 6.8e-06 21_[+1]_91 chr3R:15244942-15245062 6.8e-06 17_[+1]_95 chr3L:7529431-7529551 1.3e-05 48_[+1]_64 chr2L:3479769-3479889 1.3e-05 92_[+1]_20 chrX:3675750-3675870 2.6e-05 [+1]_112 chr3L:1968194-1968314 2.6e-05 48_[+1]_64 chr3R:27580415-27580535 2.6e-05 20_[+1]_92 chr3R:8119203-8119323 2.6e-05 49_[+1]_63 chr2L:5289140-5289260 3.5e-05 19_[+1]_93 chr3R:9931752-9931872 3.5e-05 72_[+1]_40 chr3L:17612359-17612479 4.2e-05 96_[+1]_16 chrX:7069134-7069254 5e-05 34_[+1]_78 chr2R:16856881-16857001 5e-05 4_[+1]_108 chr3R:9946631-9946751 5e-05 43_[+1]_69 chr3L:17401058-17401178 5.8e-05 105_[+1]_7 chr3L:16981409-16981529 8.2e-05 65_[+1]_47 chr2L:6081341-6081461 8.2e-05 [+1]_112 chr2L:5303299-5303419 8.2e-05 101_[+1]_11 chr2L:18965660-18965780 9.7e-05 46_[+1]_66 chr3R:18581136-18581256 9.7e-05 30_[+1]_82 chr3R:30915379-30915499 0.00013 112_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSGGSGG width=8 seqs=27 chr3L:3038244-3038364 ( 8) GGCGGCGG 1 chr2L:7952013-7952133 ( 108) GGCGGCGG 1 chr3L:17006467-17006587 ( 8) GGCGGCGG 1 chr3L:5807523-5807643 ( 41) GGCGGCGG 1 chr2R:17857178-17857298 ( 34) GGCGGCGG 1 chr3L:12517749-12517869 ( 77) GGCGGCGG 1 chr3R:9010796-9010916 ( 22) GGCGGCGG 1 chr3R:15244942-15245062 ( 18) GGCGGCGG 1 chr3L:7529431-7529551 ( 49) GGGGGCGG 1 chr2L:3479769-3479889 ( 93) GGGGGCGG 1 chrX:3675750-3675870 ( 1) GGGGGGGG 1 chr3L:1968194-1968314 ( 49) GGGGGGGG 1 chr3R:27580415-27580535 ( 21) GGGGGGGG 1 chr3R:8119203-8119323 ( 50) GGGGGGGG 1 chr2L:5289140-5289260 ( 20) TGCGGCGG 1 chr3R:9931752-9931872 ( 73) TGCGGCGG 1 chr3L:17612359-17612479 ( 97) TGGGGCGG 1 chrX:7069134-7069254 ( 35) TGCGGGGG 1 chr2R:16856881-16857001 ( 5) TGCGGGGG 1 chr3R:9946631-9946751 ( 44) TGCGGGGG 1 chr3L:17401058-17401178 ( 106) TGGGGGGG 1 chr3L:16981409-16981529 ( 66) GGCGGAGG 1 chr2L:6081341-6081461 ( 1) GGTGGCGG 1 chr2L:5303299-5303419 ( 102) GGTGGCGG 1 chr2L:18965660-18965780 ( 47) GGGGGAGG 1 chr3R:18581136-18581256 ( 31) GGGGGTGG 1 chr3R:30915379-30915499 ( 113) TGCGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 8.6e-003 -1140 -1140 165 12 -1140 -1140 216 -1140 -1140 126 73 -188 -1140 -1140 216 -1140 -1140 -1140 216 -1140 -188 126 41 -188 -1140 -1140 216 -1140 -1140 -1140 216 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 8.6e-003 0.000000 0.000000 0.703704 0.296296 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.370370 0.074074 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.074074 0.555556 0.296296 0.074074 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGG MEME-1 regular expression -------------------------------------------------------------------------------- [GT]G[CG]GG[CG]GG -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CCMCCMCC MEME-2 width = 8 sites = 35 llr = 298 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4:141: pos.-specific C aa5a958a probability G :::::11: matrix T ::1::::: bits 2.2 * * * 1.9 ** * * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ** ** ** (12.3 bits) 0.9 ** ** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCCC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21584757-21584877 25 8.39e-06 TATGTACCCC CCCCCCCC CCTAACGACA chr2L:3505045-3505165 32 8.39e-06 CACCACCACC CCCCCCCC CCACACAGGG chr3L:7836762-7836882 30 8.39e-06 AATTACCCTC CCCCCCCC CCTTCTTTTG chr2L:5301327-5301447 93 8.39e-06 TCTACCACCC CCCCCCCC TCAGGTGGGC chr3L:22839871-22839991 66 2.81e-05 TGAGCAATAC CCCCCACC ACCCACTGCC chr3R:15993214-15993334 53 2.81e-05 CCTCGGCCTG CCCCCACC CACCCCTTCT chr2L:3478066-3478186 91 2.81e-05 TCAAGACAGC CCCCCACC ATCGCTACAC chr2L:5305370-5305490 52 2.81e-05 AAGAGCTACC CCACCCCC CGCAGCAGGC chr3L:10325411-10325531 64 2.81e-05 CTCCCAATCG CCACCCCC TGCAACTCAA chr2R:16138852-16138972 61 2.81e-05 TTTTCTCACC CCACCCCC CTCCTCTAAC chr3L:766425-766545 83 2.81e-05 AAATAACTAA CCCCCACC CCAGCCACTT chr3L:17933183-17933303 82 2.81e-05 CATTGCTCTG CCCCCACC CAGAACCTTT chr3L:17401058-17401178 94 2.81e-05 TGCACCAGCA CCACCCCC CTTTTGGGGG chr3L:12804608-12804728 112 3.96e-05 TCACGTAACA CCACCACC G chrX:9639116-9639236 23 3.96e-05 CTTTCTTTTG CCACCACC ATCGGCGGAA chr2R:23997238-23997358 45 3.96e-05 TTATTCCGGG CCACCACC TTGTAGACTC chr3R:9010796-9010916 91 3.96e-05 TCCACTAGCA CCACCACC AGGGGCTGCA chr2R:16856881-16857001 67 4.77e-05 GCAGCCGAAT CCCCCGCC GCTGTCGACG chr2L:19054371-19054491 23 4.77e-05 GTGGTGCAGC Cccccgcc acccgccgcc chr3R:30915379-30915499 58 4.77e-05 TATCACCTGG CCCCCGCC ATCTCCGCTC chr3R:26260947-26261067 72 5.76e-05 TTCGCGTAGC CCCCCCAC TCCTTCAACC chr2L:6080479-6080599 90 7.52e-05 CTCCCGCCAG CCCCCCGC GTATCTAATA chr3L:16148150-16148270 107 9.82e-05 ACAGACATGC CCACCCAC TTTCCC chr3L:12798829-12798949 4 9.82e-05 AAT CCACCCAC CGATGGCCCC chrX:2107958-2108078 102 9.82e-05 TCATAGAGTT CCACCCAC TGAGTAAAGA chr3L:22837974-22838094 101 1.08e-04 tcgagttcga CCTCCCCC TCTGGCACTA chr3R:20785014-20785134 96 1.37e-04 TCCCCTTATA CCCCACCC ATGTGCGCAT chr3R:14056101-14056221 105 1.37e-04 CGCcccatca ccccaccc aaaacgcc chr2R:11894233-11894353 50 1.37e-04 TGCCATCCTT CCCCCAGC CCGTCCCACC chr2R:17857178-17857298 109 1.50e-04 TCGGTCACGC CCACCAAC TGCC chr3R:8818190-8818310 112 1.62e-04 AAAGAAGAAG CCTCCACC G chr3L:3038244-3038364 42 2.04e-04 aacaacatca ccaccagc agcagcagcg chr3L:1968194-1968314 63 2.04e-04 GGGGGCAACT CCGCCCCC TTAGTCTATT chr3L:17007316-17007436 35 2.27e-04 ATCATCACCA CCACAACC TCGCCCCTTT chr2R:14185282-14185402 84 2.47e-04 TCCGTAACTC TCCCCCCC TAgtgtgttg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21584757-21584877 8.4e-06 24_[+2]_88 chr2L:3505045-3505165 8.4e-06 31_[+2]_81 chr3L:7836762-7836882 8.4e-06 29_[+2]_83 chr2L:5301327-5301447 8.4e-06 92_[+2]_20 chr3L:22839871-22839991 2.8e-05 65_[+2]_47 chr3R:15993214-15993334 2.8e-05 52_[+2]_60 chr2L:3478066-3478186 2.8e-05 90_[+2]_22 chr2L:5305370-5305490 2.8e-05 51_[+2]_61 chr3L:10325411-10325531 2.8e-05 63_[+2]_49 chr2R:16138852-16138972 2.8e-05 60_[+2]_52 chr3L:766425-766545 2.8e-05 82_[+2]_30 chr3L:17933183-17933303 2.8e-05 81_[+2]_31 chr3L:17401058-17401178 2.8e-05 93_[+2]_19 chr3L:12804608-12804728 4e-05 111_[+2]_1 chrX:9639116-9639236 4e-05 22_[+2]_90 chr2R:23997238-23997358 4e-05 44_[+2]_68 chr3R:9010796-9010916 4e-05 90_[+2]_22 chr2R:16856881-16857001 4.8e-05 66_[+2]_46 chr2L:19054371-19054491 4.8e-05 22_[+2]_90 chr3R:30915379-30915499 4.8e-05 57_[+2]_55 chr3R:26260947-26261067 5.8e-05 71_[+2]_41 chr2L:6080479-6080599 7.5e-05 89_[+2]_23 chr3L:16148150-16148270 9.8e-05 106_[+2]_6 chr3L:12798829-12798949 9.8e-05 3_[+2]_109 chrX:2107958-2108078 9.8e-05 101_[+2]_11 chr3L:22837974-22838094 0.00011 100_[+2]_12 chr3R:20785014-20785134 0.00014 95_[+2]_17 chr3R:14056101-14056221 0.00014 104_[+2]_8 chr2R:11894233-11894353 0.00014 49_[+2]_63 chr2R:17857178-17857298 0.00015 108_[+2]_4 chr3R:8818190-8818310 0.00016 111_[+2]_1 chr3L:3038244-3038364 0.0002 41_[+2]_71 chr3L:1968194-1968314 0.0002 62_[+2]_50 chr3L:17007316-17007436 0.00023 34_[+2]_78 chr2R:14185282-14185402 0.00025 83_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCMCCMCC width=8 seqs=35 chr3R:21584757-21584877 ( 25) CCCCCCCC 1 chr2L:3505045-3505165 ( 32) CCCCCCCC 1 chr3L:7836762-7836882 ( 30) CCCCCCCC 1 chr2L:5301327-5301447 ( 93) CCCCCCCC 1 chr3L:22839871-22839991 ( 66) CCCCCACC 1 chr3R:15993214-15993334 ( 53) CCCCCACC 1 chr2L:3478066-3478186 ( 91) CCCCCACC 1 chr2L:5305370-5305490 ( 52) CCACCCCC 1 chr3L:10325411-10325531 ( 64) CCACCCCC 1 chr2R:16138852-16138972 ( 61) CCACCCCC 1 chr3L:766425-766545 ( 83) CCCCCACC 1 chr3L:17933183-17933303 ( 82) CCCCCACC 1 chr3L:17401058-17401178 ( 94) CCACCCCC 1 chr3L:12804608-12804728 ( 112) CCACCACC 1 chrX:9639116-9639236 ( 23) CCACCACC 1 chr2R:23997238-23997358 ( 45) CCACCACC 1 chr3R:9010796-9010916 ( 91) CCACCACC 1 chr2R:16856881-16857001 ( 67) CCCCCGCC 1 chr2L:19054371-19054491 ( 23) CCCCCGCC 1 chr3R:30915379-30915499 ( 58) CCCCCGCC 1 chr3R:26260947-26261067 ( 72) CCCCCCAC 1 chr2L:6080479-6080599 ( 90) CCCCCCGC 1 chr3L:16148150-16148270 ( 107) CCACCCAC 1 chr3L:12798829-12798949 ( 4) CCACCCAC 1 chrX:2107958-2108078 ( 102) CCACCCAC 1 chr3L:22837974-22838094 ( 101) CCTCCCCC 1 chr3R:20785014-20785134 ( 96) CCCCACCC 1 chr3R:14056101-14056221 ( 105) CCCCACCC 1 chr2R:11894233-11894353 ( 50) CCCCCAGC 1 chr2R:17857178-17857298 ( 109) CCACCAAC 1 chr3R:8818190-8818310 ( 112) CCTCCACC 1 chr3L:3038244-3038364 ( 42) CCACCAGC 1 chr3L:1968194-1968314 ( 63) CCGCCCCC 1 chr3L:17007316-17007436 ( 35) CCACAACC 1 chr2R:14185282-14185402 ( 84) TCCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 1.2e+002 -1177 207 -1177 -325 -1177 211 -1177 -1177 56 115 -297 -225 -1177 211 -1177 -1177 -167 198 -1177 -1177 56 115 -138 -1177 -93 173 -138 -1177 -1177 211 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.2e+002 0.000000 0.971429 0.000000 0.028571 0.000000 1.000000 0.000000 0.000000 0.400000 0.514286 0.028571 0.057143 0.000000 1.000000 0.000000 0.000000 0.085714 0.914286 0.000000 0.000000 0.400000 0.514286 0.085714 0.000000 0.142857 0.771429 0.085714 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCCMCC MEME-2 regular expression -------------------------------------------------------------------------------- CC[CA]CC[CA]CC -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKGCAAA MEME-3 width = 8 sites = 22 llr = 212 E-value = 8.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::aaa pos.-specific C ::::a::: probability G :35a:::: matrix T a75::::: bits 2.2 ** 1.9 * ***** 1.7 * ***** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCAAA consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17431298-17431418 67 1.73e-05 GCACAAGTAA TTGGCAAA TCCCACAACG chr2L:3880247-3880367 96 1.73e-05 GTACATATTT TTGGCAAA AGTAAACTGA chr3R:13819157-13819277 108 1.73e-05 ACCTGGCCAC TTGGCAAA TAAAT chr2L:3505045-3505165 14 1.73e-05 GTGGGCTGGA TTGGCAAA CACCACCACC chr2R:6993982-6994102 27 1.73e-05 TGTTATACGA TTGGCAAA TATCATATAC chr2R:10272884-10273004 34 1.73e-05 GCGTTTTGGC TTGGCAAA TAAAACACAC chr2L:11845256-11845376 26 1.73e-05 ATAACCTATG TTGGCAAA TACCAATTTG chr3R:5270932-5271052 77 1.73e-05 ACTAGAAACT TTGGCAAA CTACTCAACA chr2R:21649108-21649228 4 1.73e-05 CAG TTGGCAAA TATGCACTCT chr3R:8818190-8818310 97 1.73e-05 TCGGTTGTTG TTGGCAAA GAAGAAGCCT chr3L:9065073-9065193 112 3.84e-05 TAGTATTTGG TTTGCAAA G chr3R:21584757-21584877 103 3.84e-05 ATTACTAGCT TTTGCAAA TAACAAATAT chr2L:18459819-18459939 12 3.84e-05 GCGGAAAATG TTTGCAAA TTGAGTTTCA chr2R:21236767-21236887 30 3.84e-05 CATTTGTCTT TTTGCAAA TTAATTTATA chr3L:9066609-9066729 103 3.84e-05 CGCTATCTAT TTTGCAAA GCCCACTTAA chr2L:1124377-1124497 70 3.84e-05 AAAATCGCGA TTTGCAAA ATTCCCAACC chr2R:13592019-13592139 35 5.26e-05 TCATTCTCAG TGGGCAAA ATATTGAATA chr3R:6583412-6583532 73 5.26e-05 ATCCAGCGAA TGGGCAAA AATTAGACGC chr2R:21313212-21313332 67 7.00e-05 GACGCCCCTG TGTGCAAA TTGTGCGAGC chr3L:11656256-11656376 7 7.00e-05 CGCCTC TGTGCAAA CAAACATCTA chr3R:21180532-21180652 6 7.00e-05 CTAAA TGTGCAAA GACAATTTAA chr3L:2800492-2800612 46 7.00e-05 TTTACGAAGG TGTGCAAA AGTATGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17431298-17431418 1.7e-05 66_[+3]_46 chr2L:3880247-3880367 1.7e-05 95_[+3]_17 chr3R:13819157-13819277 1.7e-05 107_[+3]_5 chr2L:3505045-3505165 1.7e-05 13_[+3]_99 chr2R:6993982-6994102 1.7e-05 26_[+3]_86 chr2R:10272884-10273004 1.7e-05 33_[+3]_79 chr2L:11845256-11845376 1.7e-05 25_[+3]_87 chr3R:5270932-5271052 1.7e-05 76_[+3]_36 chr2R:21649108-21649228 1.7e-05 3_[+3]_109 chr3R:8818190-8818310 1.7e-05 96_[+3]_16 chr3L:9065073-9065193 3.8e-05 111_[+3]_1 chr3R:21584757-21584877 3.8e-05 102_[+3]_10 chr2L:18459819-18459939 3.8e-05 11_[+3]_101 chr2R:21236767-21236887 3.8e-05 29_[+3]_83 chr3L:9066609-9066729 3.8e-05 102_[+3]_10 chr2L:1124377-1124497 3.8e-05 69_[+3]_43 chr2R:13592019-13592139 5.3e-05 34_[+3]_78 chr3R:6583412-6583532 5.3e-05 72_[+3]_40 chr2R:21313212-21313332 7e-05 66_[+3]_46 chr3L:11656256-11656376 7e-05 6_[+3]_106 chr3R:21180532-21180652 7e-05 5_[+3]_107 chr3L:2800492-2800612 7e-05 45_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKGCAAA width=8 seqs=22 chr3L:17431298-17431418 ( 67) TTGGCAAA 1 chr2L:3880247-3880367 ( 96) TTGGCAAA 1 chr3R:13819157-13819277 ( 108) TTGGCAAA 1 chr2L:3505045-3505165 ( 14) TTGGCAAA 1 chr2R:6993982-6994102 ( 27) TTGGCAAA 1 chr2R:10272884-10273004 ( 34) TTGGCAAA 1 chr2L:11845256-11845376 ( 26) TTGGCAAA 1 chr3R:5270932-5271052 ( 77) TTGGCAAA 1 chr2R:21649108-21649228 ( 4) TTGGCAAA 1 chr3R:8818190-8818310 ( 97) TTGGCAAA 1 chr3L:9065073-9065193 ( 112) TTTGCAAA 1 chr3R:21584757-21584877 ( 103) TTTGCAAA 1 chr2L:18459819-18459939 ( 12) TTTGCAAA 1 chr2R:21236767-21236887 ( 30) TTTGCAAA 1 chr3L:9066609-9066729 ( 103) TTTGCAAA 1 chr2L:1124377-1124497 ( 70) TTTGCAAA 1 chr2R:13592019-13592139 ( 35) TGGGCAAA 1 chr3R:6583412-6583532 ( 73) TGGGCAAA 1 chr2R:21313212-21313332 ( 67) TGTGCAAA 1 chr3L:11656256-11656376 ( 7) TGTGCAAA 1 chr3R:21180532-21180652 ( 6) TGTGCAAA 1 chr3L:2800492-2800612 ( 46) TGTGCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 8.4e-001 -1110 -1110 -1110 188 -1110 -1110 29 142 -1110 -1110 129 74 -1110 -1110 216 -1110 -1110 211 -1110 -1110 188 -1110 -1110 -1110 188 -1110 -1110 -1110 188 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 8.4e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.545455 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKGCAAA MEME-3 regular expression -------------------------------------------------------------------------------- T[TG][GT]GCAAA -------------------------------------------------------------------------------- Time 19.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGGGT MEME-4 width = 8 sites = 4 llr = 46 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G aa:aaaa: matrix T ::a::::a bits 2.2 ** **** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGGGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13819157-13819277 72 9.35e-06 AAGGAGAGCT GGTGGGGT GGCGCAGCAC chr3R:29756239-29756359 7 9.35e-06 ATCGTA GGTGGGGT ATGCTTGAAT chr3L:9059898-9060018 68 9.35e-06 CACTTAGCAG GGTGGGGT GTAGAACGCA chr3R:11762585-11762705 86 9.35e-06 CGGAGTGGGT GGTGGGGT TGGGCGCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13819157-13819277 9.3e-06 71_[+4]_41 chr3R:29756239-29756359 9.3e-06 6_[+4]_106 chr3L:9059898-9060018 9.3e-06 67_[+4]_45 chr3R:11762585-11762705 9.3e-06 85_[+4]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGGGT width=8 seqs=4 chr3R:13819157-13819277 ( 72) GGTGGGGT 1 chr3R:29756239-29756359 ( 7) GGTGGGGT 1 chr3L:9059898-9060018 ( 68) GGTGGGGT 1 chr3R:11762585-11762705 ( 86) GGTGGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.2e+005 -865 -865 216 -865 -865 -865 216 -865 -865 -865 -865 187 -865 -865 216 -865 -865 -865 216 -865 -865 -865 216 -865 -865 -865 216 -865 -865 -865 -865 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGGGT MEME-4 regular expression -------------------------------------------------------------------------------- GGTGGGGT -------------------------------------------------------------------------------- Time 25.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCAGCG MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::a::a: probability G aaa::a:a matrix T :::::::: bits 2.2 **** *** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCAGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9639116-9639236 63 8.26e-06 GCGGGTCGGT GGGCAGCG CTCGCCCCCT chr3R:9946631-9946751 69 8.26e-06 GACTAAGGAG GGGCAGCG GCGGATGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9639116-9639236 8.3e-06 62_[+5]_50 chr3R:9946631-9946751 8.3e-06 68_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCAGCG width=8 seqs=2 chrX:9639116-9639236 ( 63) GGGCAGCG 1 chr3R:9946631-9946751 ( 69) GGGCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.7e+005 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -765 210 -765 -765 187 -765 -765 -765 -765 -765 216 -765 -765 210 -765 -765 -765 -765 216 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGCG MEME-5 regular expression -------------------------------------------------------------------------------- GGGCAGCG -------------------------------------------------------------------------------- Time 32.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7835231-7835351 3.37e-01 120 chrX:2685022-2685142 2.10e-01 120 chr3L:9376677-9376797 3.51e-01 120 chr2L:5301327-5301447 2.83e-02 89_[+2(8.39e-06)]_23 chr3R:11961141-11961261 4.90e-01 120 chr3R:21296899-21297019 1.33e-01 120 chr3L:5750068-5750188 9.21e-01 120 chr3L:7772304-7772424 8.67e-01 120 chr2L:1114424-1114544 5.94e-01 120 chr2L:5303299-5303419 7.54e-03 11_[+5(8.50e-05)]_82_[+1(8.21e-05)]_\ 11 chr3R:9946631-9946751 5.70e-04 15_[+5(3.04e-05)]_20_[+1(5.05e-05)]_\ 17_[+5(8.26e-06)]_44 chr3R:6583412-6583532 2.01e-01 72_[+3(5.26e-05)]_40 chr3R:18546273-18546393 8.91e-01 120 chr3R:27561271-27561391 1.88e-01 120 chr3L:5751676-5751796 3.56e-01 120 chr3L:12050039-12050159 5.11e-01 120 chr2L:20674877-20674997 7.81e-01 120 chr2R:9428820-9428940 2.76e-01 120 chr2L:3507307-3507427 1.78e-01 120 chr2R:19300099-19300219 5.31e-01 120 chr2L:6077431-6077551 4.57e-01 120 chr3L:7775649-7775769 9.87e-01 120 chr3L:9095770-9095890 7.05e-01 120 chr3L:17000483-17000603 7.34e-02 120 chr2R:12279546-12279666 9.27e-01 120 chr3R:10081595-10081715 3.54e-01 120 chr2R:18515686-18515806 3.53e-01 120 chr2L:1124377-1124497 1.22e-02 69_[+3(3.84e-05)]_43 chr3R:14070230-14070350 5.21e-01 120 chr3L:7833775-7833895 4.93e-01 120 chr3R:15244942-15245062 3.57e-04 17_[+1(6.80e-06)]_95 chr3L:17401058-17401178 6.45e-05 93_[+2(2.81e-05)]_4_[+1(5.82e-05)]_\ 7 chr3R:9011835-9011955 9.32e-02 120 chr2R:13592019-13592139 2.02e-01 34_[+3(5.26e-05)]_78 chr3R:28025333-28025453 8.67e-01 120 chr3R:9010796-9010916 1.79e-04 21_[+1(6.80e-06)]_61_[+2(3.96e-05)]_\ 22 chr3R:21195670-21195790 4.86e-01 120 chr3L:3195933-3196053 6.20e-01 120 chr2R:10799826-10799946 9.95e-01 120 chr3R:11762585-11762705 3.16e-05 69_[+5(8.50e-05)]_8_[+4(9.35e-06)]_\ 27 chr3R:7947467-7947587 1.56e-01 120 chr2R:23997238-23997358 7.06e-02 44_[+2(3.96e-05)]_68 chr3R:30915379-30915499 3.05e-04 57_[+2(4.77e-05)]_55 chr2L:6080479-6080599 2.58e-01 89_[+2(7.52e-05)]_23 chr3R:8818190-8818310 4.12e-03 96_[+3(1.73e-05)]_16 chr3R:9931752-9931872 1.77e-02 72_[+1(3.45e-05)]_40 chr3R:29905640-29905760 8.37e-01 120 chr3L:5750312-5750432 2.53e-01 120 chr3R:31216341-31216461 6.53e-01 120 chr3R:18582381-18582501 8.76e-01 120 chr3L:1628554-1628674 2.04e-01 120 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1.67e-01 120 chr2L:18936273-18936393 9.89e-01 120 chr2L:2362987-2363107 8.36e-02 120 chr2R:24295164-24295284 6.37e-01 120 chr3R:10863002-10863122 7.79e-01 120 chr2L:13190700-13190820 1.75e-01 120 chr3L:20386140-20386260 4.70e-01 120 chr3R:15993214-15993334 5.03e-02 52_[+2(2.81e-05)]_60 chr3L:11292469-11292589 6.10e-02 120 chr3R:29064775-29064895 8.36e-02 120 chr3L:22839871-22839991 3.54e-02 65_[+2(2.81e-05)]_47 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c26n02.farnam.hpc.yale.internal ********************************************************************************