******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Camta.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:12261568-12261688 1.0000 120 chr3R:26859321-26859441 1.0000 120 chr3L:1167007-1167127 1.0000 120 chrX:8417159-8417279 1.0000 120 chr2L:7158944-7159064 1.0000 120 chr3R:15644916-15645036 1.0000 120 chrX:16650573-16650693 1.0000 120 chr3L:6086174-6086294 1.0000 120 chr2R:20938394-20938514 1.0000 120 chrX:8677545-8677665 1.0000 120 chr2L:9911939-9912059 1.0000 120 chrX:8409276-8409396 1.0000 120 chrX:11846467-11846587 1.0000 120 chrX:7703112-7703232 1.0000 120 chr2L:8554454-8554574 1.0000 120 chr2R:20126702-20126822 1.0000 120 chr3R:29699392-29699512 1.0000 120 chr3R:28327292-28327412 1.0000 120 chrX:6615589-6615709 1.0000 120 chr2R:14488725-14488845 1.0000 120 chr3L:623705-623825 1.0000 120 chrX:16105820-16105940 1.0000 120 chr3L:4521859-4521979 1.0000 120 chr2R:18421209-18421329 1.0000 120 chrX:12221667-12221787 1.0000 120 chr3R:25624245-25624365 1.0000 120 chr2R:21909958-21910078 1.0000 120 chr3L:7961343-7961463 1.0000 120 chrX:8202894-8203014 1.0000 120 chr2R:20091279-20091399 1.0000 120 chr3R:8033109-8033229 1.0000 120 chr3L:721140-721260 1.0000 120 chr3R:24026227-24026347 1.0000 120 chr3R:10630170-10630290 1.0000 120 chrX:17473392-17473512 1.0000 120 chr3L:10337778-10337898 1.0000 120 chr3R:26235161-26235281 1.0000 120 chr2R:5757872-5757992 1.0000 120 chr2R:21091943-21092063 1.0000 120 chr2R:21514463-21514583 1.0000 120 chr3R:27440716-27440836 1.0000 120 chr3R:22367244-22367364 1.0000 120 chr3L:9028167-9028287 1.0000 120 chr2L:3841098-3841218 1.0000 120 chr2L:4403151-4403271 1.0000 120 chr3R:23763203-23763323 1.0000 120 chr2L:1428461-1428581 1.0000 120 chrX:771815-771935 1.0000 120 chrX:3745241-3745361 1.0000 120 chr2R:18883682-18883802 1.0000 120 chrX:2036947-2037067 1.0000 120 chr3R:9763209-9763329 1.0000 120 chr3R:14002101-14002221 1.0000 120 chr3R:7492137-7492257 1.0000 120 chr3L:20630821-20630941 1.0000 120 chrX:12454489-12454609 1.0000 120 chr2R:22387700-22387820 1.0000 120 chr2L:7628523-7628643 1.0000 120 chrX:12015112-12015232 1.0000 120 chrX:9082683-9082803 1.0000 120 chrX:9119478-9119598 1.0000 120 chr2R:17272603-17272723 1.0000 120 chr2R:16848428-16848548 1.0000 120 chr3R:9344926-9345046 1.0000 120 chrX:6279156-6279276 1.0000 120 chr2L:20390171-20390291 1.0000 120 chr3R:29251606-29251726 1.0000 120 chr3L:8835076-8835196 1.0000 120 chrX:16103534-16103654 1.0000 120 chrX:19243418-19243538 1.0000 120 chr3L:11408874-11408994 1.0000 120 chr2L:19058983-19059103 1.0000 120 chrX:16350182-16350302 1.0000 120 chr2R:11792713-11792833 1.0000 120 chrX:13253252-13253372 1.0000 120 chr3R:31723380-31723500 1.0000 120 chrX:20423875-20423995 1.0000 120 chr3R:13549592-13549712 1.0000 120 chrX:11149303-11149423 1.0000 120 chr2R:6157361-6157481 1.0000 120 chrX:19164945-19165065 1.0000 120 chr2L:12351039-12351159 1.0000 120 chrX:6663261-6663381 1.0000 120 chr2L:8424014-8424134 1.0000 120 chr2L:18871962-18872082 1.0000 120 chrX:5639248-5639368 1.0000 120 chr3R:17534606-17534726 1.0000 120 chr3R:12997873-12997993 1.0000 120 chr3R:26863186-26863306 1.0000 120 chr3R:21850213-21850333 1.0000 120 chr3R:13892994-13893114 1.0000 120 chrX:19865768-19865888 1.0000 120 chrX:14213614-14213734 1.0000 120 chr2R:14137036-14137156 1.0000 120 chrX:17176686-17176806 1.0000 120 chr2R:15754420-15754540 1.0000 120 chr3L:7861182-7861302 1.0000 120 chr2L:901517-901637 1.0000 120 chr3L:642895-643015 1.0000 120 chr2L:11206988-11207108 1.0000 120 chrX:3538941-3539061 1.0000 120 chr3R:23445396-23445516 1.0000 120 chr3L:6054917-6055037 1.0000 120 chr3R:22041837-22041957 1.0000 120 chr3R:8784914-8785034 1.0000 120 chr2R:24571793-24571913 1.0000 120 chr3L:6264589-6264709 1.0000 120 chr2L:10231250-10231370 1.0000 120 chr3R:10677440-10677560 1.0000 120 chr2R:24293560-24293680 1.0000 120 chr3R:10636146-10636266 1.0000 120 chr3R:13840102-13840222 1.0000 120 chr3L:20276801-20276921 1.0000 120 chr2R:20319485-20319605 1.0000 120 chr3L:3760717-3760837 1.0000 120 chr2R:13430025-13430145 1.0000 120 chr3L:5987727-5987847 1.0000 120 chr2L:16476507-16476627 1.0000 120 chr3R:12406382-12406502 1.0000 120 chr2L:17583106-17583226 1.0000 120 chr3L:7249374-7249494 1.0000 120 chr3R:10648939-10649059 1.0000 120 chr3R:10696429-10696549 1.0000 120 chr3R:4775458-4775578 1.0000 120 chr3R:14657186-14657306 1.0000 120 chr3L:3336871-3336991 1.0000 120 chrX:13128026-13128146 1.0000 120 chr2L:5980977-5981097 1.0000 120 chr3L:15565898-15566018 1.0000 120 chr2L:20734312-20734432 1.0000 120 chr2R:23970077-23970197 1.0000 120 chrX:12699216-12699336 1.0000 120 chr2R:11679311-11679431 1.0000 120 chr3R:31395379-31395499 1.0000 120 chr3L:21412209-21412329 1.0000 120 chr3R:20948633-20948753 1.0000 120 chrX:18921066-18921186 1.0000 120 chrX:11548848-11548968 1.0000 120 chr2L:3852261-3852381 1.0000 120 chrX:3188568-3188688 1.0000 120 chr2L:7632932-7633052 1.0000 120 chr3R:10203700-10203820 1.0000 120 chr2R:10899088-10899208 1.0000 120 chr3R:20276152-20276272 1.0000 120 chr3R:21493770-21493890 1.0000 120 chr3L:15235348-15235468 1.0000 120 chr3L:1578615-1578735 1.0000 120 chr2R:23176760-23176880 1.0000 120 chr2R:13008377-13008497 1.0000 120 chrX:7015082-7015202 1.0000 120 chr3R:10520681-10520801 1.0000 120 chrX:10582201-10582321 1.0000 120 chr2L:16703829-16703949 1.0000 120 chr3R:16718113-16718233 1.0000 120 chr2L:20950786-20950906 1.0000 120 chr2L:17963156-17963276 1.0000 120 chr3R:9038829-9038949 1.0000 120 chr2R:6524239-6524359 1.0000 120 chrX:18899957-18900077 1.0000 120 chr2R:16832918-16833038 1.0000 120 chr3R:9220146-9220266 1.0000 120 chrX:1370177-1370297 1.0000 120 chr2L:3856501-3856621 1.0000 120 chrX:6621716-6621836 1.0000 120 chr3R:14470781-14470901 1.0000 120 chr3L:9899174-9899294 1.0000 120 chr2R:11640741-11640861 1.0000 120 chr2R:7987835-7987955 1.0000 120 chr3R:31169096-31169216 1.0000 120 chr3L:745742-745862 1.0000 120 chr3L:11334122-11334242 1.0000 120 chr2L:7313608-7313728 1.0000 120 chr3R:18215476-18215596 1.0000 120 chr3L:14195881-14196001 1.0000 120 chrX:9137326-9137446 1.0000 120 chr3L:3090818-3090938 1.0000 120 chr3R:6667391-6667511 1.0000 120 chr2L:20918866-20918986 1.0000 120 chrX:16441337-16441457 1.0000 120 chr3L:1376182-1376302 1.0000 120 chr2R:11809444-11809564 1.0000 120 chr3R:16919209-16919329 1.0000 120 chr3L:7348078-7348198 1.0000 120 chr3L:16853752-16853872 1.0000 120 chr2L:6907931-6908051 1.0000 120 chrX:2978237-2978357 1.0000 120 chrX:17510556-17510676 1.0000 120 chrX:4610588-4610708 1.0000 120 chr2R:19146111-19146231 1.0000 120 chrX:19770237-19770357 1.0000 120 chrX:7333338-7333458 1.0000 120 chr2R:7698953-7699073 1.0000 120 chr2L:20681855-20681975 1.0000 120 chr3R:25004914-25005034 1.0000 120 chr2L:14022599-14022719 1.0000 120 chr3L:6059218-6059338 1.0000 120 chrX:6590797-6590917 1.0000 120 chr2L:14245637-14245757 1.0000 120 chr3R:8301348-8301468 1.0000 120 chrX:2149662-2149782 1.0000 120 chr3R:26654714-26654834 1.0000 120 chr3R:5636835-5636955 1.0000 120 chrX:1907806-1907926 1.0000 120 chr3L:1350596-1350716 1.0000 120 chr3R:8886950-8887070 1.0000 120 chr3L:21517000-21517120 1.0000 120 chr3L:12803821-12803941 1.0000 120 chr3L:5974708-5974828 1.0000 120 chr3L:2489597-2489717 1.0000 120 chr3R:15676336-15676456 1.0000 120 chr3R:28599646-28599766 1.0000 120 chr2L:15751155-15751275 1.0000 120 chr2R:21712049-21712169 1.0000 120 chr3R:28845258-28845378 1.0000 120 chr3L:22163910-22164030 1.0000 120 chr3L:18782244-18782364 1.0000 120 chr3L:9402456-9402576 1.0000 120 chr2R:20601237-20601357 1.0000 120 chr3R:23176544-23176664 1.0000 120 chr2R:9006890-9007010 1.0000 120 chr3R:23942858-23942978 1.0000 120 chr2R:9881483-9881603 1.0000 120 chrX:4616974-4617094 1.0000 120 chr2R:14267690-14267810 1.0000 120 chr2L:858217-858337 1.0000 120 chr3R:14743029-14743149 1.0000 120 chr2R:16170825-16170945 1.0000 120 chrX:5892216-5892336 1.0000 120 chr2R:23574928-23575048 1.0000 120 chrX:6037381-6037501 1.0000 120 chr3R:30058102-30058222 1.0000 120 chrX:11660622-11660742 1.0000 120 chr3R:5319180-5319300 1.0000 120 chr2L:19508754-19508874 1.0000 120 chr2L:18900069-18900189 1.0000 120 chr2L:1980759-1980879 1.0000 120 chrX:18635413-18635533 1.0000 120 chr2R:21295576-21295696 1.0000 120 chr2R:21060669-21060789 1.0000 120 chrX:15844250-15844370 1.0000 120 chr2L:21163530-21163650 1.0000 120 chrX:11807539-11807659 1.0000 120 chr3L:613662-613782 1.0000 120 chr2L:1473567-1473687 1.0000 120 chr2R:23652341-23652461 1.0000 120 chr3L:7151992-7152112 1.0000 120 chr2R:18125821-18125941 1.0000 120 chr2L:10516733-10516853 1.0000 120 chr3L:2472818-2472938 1.0000 120 chr2L:18666033-18666153 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Camta/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Camta.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.181 G 0.178 T 0.323 Background letter frequencies (from file dataset with add-one prior applied): A 0.317 C 0.181 G 0.178 T 0.323 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTTTGCC MEME-1 width = 8 sites = 24 llr = 228 E-value = 7.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C ::::::96 probability G :a:::a1: matrix T a:aaa::3 bits 2.5 * * 2.2 * * 2.0 * ** 1.7 ** *** Relative 1.5 ******* Entropy 1.2 ******* (13.7 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTGCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11660622-11660742 73 1.13e-05 TCTTGGCCTT TGTTTGCC TTGGCCAGTC chr3R:15676336-15676456 108 1.13e-05 TTGTTTGCCT TGTTTGCC TGTAT chrX:6590797-6590917 54 1.13e-05 TAGGACCAGC TGTTTGCC ACCACTAGTT chrX:7333338-7333458 111 1.13e-05 ATCTGTTTTG TGTTTGCC TA chr3R:9038829-9038949 81 1.13e-05 GGGGATCAGC TGTTTGCC AACATGTGAG chr2L:16476507-16476627 74 1.13e-05 CTTCATTCCA TGTTTGCC GCTGGTACAC chr2R:20319485-20319605 40 1.13e-05 TCTAGCCCTG TGTTTGCC AATTTTATTG chr3L:642895-643015 64 1.13e-05 TTTTATGCTT TGTTTGCC CATTACAAAA chr3L:8835076-8835196 30 1.13e-05 TCTGTACAAA TGTTTGCC TTCGCCGGGC chr2R:9006890-9007010 43 3.15e-05 TTCTGGCTAA TGTTTGCT GCCTCTGTTT chr3L:22163910-22164030 62 3.15e-05 CATGGCGCTA TGTTTGCT TTCGGTTGTT chr2R:6524239-6524359 48 3.15e-05 GCTGTATATT TGTTTGCT CGAGAATCAT chr3R:20276152-20276272 38 3.15e-05 ACTTTCCTGT TGTTTGCT CAACACAACG chr3R:10203700-10203820 42 3.15e-05 CAAATATTTA TGTTTGCT TACAGTGCAT chr2L:7158944-7159064 89 3.15e-05 GTGTACATTG TGTTTGCT TTGGGGTGAG chr3R:5319180-5319300 84 5.12e-05 gaaaaaaaGT TGTTTGCA AACAAAAAAG chr3L:2489597-2489717 44 5.12e-05 CTACGTGAGC TGTTTGCA TATGTCGCGT chr3L:5974708-5974828 64 5.12e-05 ATATGCGCCT TGTTTGCA TATAGAAATG chr2R:24293560-24293680 32 5.12e-05 ATTTGCTTTT TGTTTGCA TGTGCGTCGG chr3L:2472818-2472938 102 6.24e-05 CCCTGCCACA TGTTTGGC TTTTGTTTTT chrX:11807539-11807659 34 6.24e-05 GAGAGTACGA TGTTTGGC CTTCTTCTTT chr2R:22387700-22387820 11 6.24e-05 TCTAGCTTGT TGTTTGGC CTACAAAAAC chr2L:5980977-5981097 63 7.48e-05 AAACAATCGA TGTGTGCC AAAATTCGAT chr2R:13430025-13430145 6 7.48e-05 GCGGT TGGTTGCC AGACCGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11660622-11660742 1.1e-05 72_[+1]_40 chr3R:15676336-15676456 1.1e-05 107_[+1]_5 chrX:6590797-6590917 1.1e-05 53_[+1]_59 chrX:7333338-7333458 1.1e-05 110_[+1]_2 chr3R:9038829-9038949 1.1e-05 80_[+1]_32 chr2L:16476507-16476627 1.1e-05 73_[+1]_39 chr2R:20319485-20319605 1.1e-05 39_[+1]_73 chr3L:642895-643015 1.1e-05 63_[+1]_49 chr3L:8835076-8835196 1.1e-05 29_[+1]_83 chr2R:9006890-9007010 3.1e-05 42_[+1]_70 chr3L:22163910-22164030 3.1e-05 61_[+1]_51 chr2R:6524239-6524359 3.1e-05 47_[+1]_65 chr3R:20276152-20276272 3.1e-05 37_[+1]_75 chr3R:10203700-10203820 3.1e-05 41_[+1]_71 chr2L:7158944-7159064 3.1e-05 88_[+1]_24 chr3R:5319180-5319300 5.1e-05 83_[+1]_29 chr3L:2489597-2489717 5.1e-05 43_[+1]_69 chr3L:5974708-5974828 5.1e-05 63_[+1]_49 chr2R:24293560-24293680 5.1e-05 31_[+1]_81 chr3L:2472818-2472938 6.2e-05 101_[+1]_11 chrX:11807539-11807659 6.2e-05 33_[+1]_79 chr2R:22387700-22387820 6.2e-05 10_[+1]_102 chr2L:5980977-5981097 7.5e-05 62_[+1]_50 chr2R:13430025-13430145 7.5e-05 5_[+1]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTGCC width=8 seqs=24 chrX:11660622-11660742 ( 73) TGTTTGCC 1 chr3R:15676336-15676456 ( 108) TGTTTGCC 1 chrX:6590797-6590917 ( 54) TGTTTGCC 1 chrX:7333338-7333458 ( 111) TGTTTGCC 1 chr3R:9038829-9038949 ( 81) TGTTTGCC 1 chr2L:16476507-16476627 ( 74) TGTTTGCC 1 chr2R:20319485-20319605 ( 40) TGTTTGCC 1 chr3L:642895-643015 ( 64) TGTTTGCC 1 chr3L:8835076-8835196 ( 30) TGTTTGCC 1 chr2R:9006890-9007010 ( 43) TGTTTGCT 1 chr3L:22163910-22164030 ( 62) TGTTTGCT 1 chr2R:6524239-6524359 ( 48) TGTTTGCT 1 chr3R:20276152-20276272 ( 38) TGTTTGCT 1 chr3R:10203700-10203820 ( 42) TGTTTGCT 1 chr2L:7158944-7159064 ( 89) TGTTTGCT 1 chr3R:5319180-5319300 ( 84) TGTTTGCA 1 chr3L:2489597-2489717 ( 44) TGTTTGCA 1 chr3L:5974708-5974828 ( 64) TGTTTGCA 1 chr2R:24293560-24293680 ( 32) TGTTTGCA 1 chr3L:2472818-2472938 ( 102) TGTTTGGC 1 chrX:11807539-11807659 ( 34) TGTTTGGC 1 chr2R:22387700-22387820 ( 11) TGTTTGGC 1 chr2L:5980977-5981097 ( 63) TGTGTGCC 1 chr2R:13430025-13430145 ( 6) TGGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 7.9e-002 -1123 -1123 -1123 163 -1123 -1123 249 -1123 -1123 -1123 -209 157 -1123 -1123 -209 157 -1123 -1123 -1123 163 -1123 -1123 249 -1123 -1123 227 -51 -1123 -93 169 -1123 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 7.9e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.166667 0.583333 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCC MEME-1 regular expression -------------------------------------------------------------------------------- TGTTTGC[CT] -------------------------------------------------------------------------------- Time 7.35 secs. ******************************************************************************** ******************************************************************************** MOTIF CASHGCWG MEME-2 width = 8 sites = 42 llr = 341 E-value = 3.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:4::3: pos.-specific C 7:52:a1: probability G 3251a:2a matrix T :::4::4: bits 2.5 ** * 2.2 ** * 2.0 ** * 1.7 * ** * Relative 1.5 * * ** * Entropy 1.2 * * ** * (11.7 bits) 1.0 *** ** * 0.7 *** ** * 0.5 *** ** * 0.2 *** ** * 0.0 -------- Multilevel CACAGCTG consensus GGGT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23574928-23575048 93 1.23e-05 CTCCATCCTT CACAGCTG GATTTTCCTC chr2R:17272603-17272723 24 1.23e-05 CAGATGCCAG CACAGCTG CCTTTGTGTG chrX:12015112-12015232 20 1.23e-05 GTCACAAGAG CACAGCTG CAACGCACAG chr3L:1578615-1578735 80 1.58e-05 AGCTCATTTC CACCGCTG ACCCAGAATT chr2L:1980759-1980879 39 3.47e-05 GCTGCGGTCA CACTGCGG CCAGGAGGAA chrX:6037381-6037501 75 3.47e-05 GGTCACACCG CACAGCGG GCCAAGCTCT chr2R:16170825-16170945 16 3.47e-05 ATCTGCCTAA CAGTGCTG TAAAATGTGT chr3R:23942858-23942978 67 3.47e-05 TCGACTGCAT CACAGCGG TGGGCAGTGC chr2R:21295576-21295696 97 4.00e-05 GGCCCGGTGG CAGCGCTG AAATAACACA chr2L:19508754-19508874 59 4.00e-05 TTACATTTAA CAGCGCTG TCGCTAACAT chr3R:21850213-21850333 38 4.67e-05 GTAATTAGAA CAGTGCGG ACTCGGCCAA chr2L:8424014-8424134 51 6.07e-05 CAAAGTGATA CACAGCAG CTTGGAGTGT chr3R:23445396-23445516 111 7.10e-05 GACAGCTGTC CGCAGCTG GT chrX:16350182-16350302 39 7.10e-05 ATTCGAAATA CACCGCAG TGTGAACGCC chr3R:25004914-25005034 101 9.52e-05 TTATTTTTTC CAGTGCAG CTGCTAAGTC chr3L:745742-745862 70 9.52e-05 GAATTTATTT CAGTGCAG CTACTCAGCA chr3L:15565898-15566018 74 9.52e-05 GGAGTGCCAC CACTGCCG TGATTCGATA chr3R:29251606-29251726 32 9.52e-05 GCCAAAAAGT CGCCGCTG TTATACTCAA chr3R:25624245-25624365 74 9.52e-05 AGTGGATTTG CACTGCCG GGAGTGCTTC chr3R:28845258-28845378 72 1.11e-04 CGGGAAGCTG CGCAGCGG AGAACGCGAA chr2R:18125821-18125941 28 1.26e-04 GCAGAAGCGC CAGGGCTG CACAATAGTC chr2R:21060669-21060789 113 1.26e-04 ACTTTATAAC CAGGGCTG chr3L:9899174-9899294 17 1.26e-04 AACTGTTGAC CAGGGCTG GAAACGGCAA chr3L:642895-643015 102 1.26e-04 GTCGTAAACG CGGCGCTG ATAACGTTGC chrX:11807539-11807659 15 1.44e-04 CAAACATTTT CGGAGCGG AGAGAGTACG chr3L:6059218-6059338 1 1.44e-04 . CGGTGCGG AAGTGGGTTA chr2L:19058983-19059103 11 1.44e-04 GGCTTTAAAA GACTGCTG TACAGTGGGT chr2L:4403151-4403271 63 1.44e-04 CGTTTCCGCT GACAGCTG TCATCGATAT chr2L:9911939-9912059 63 1.44e-04 CCTGGCTAAC GACAGCTG TTCGCAACGC chrX:6590797-6590917 26 1.57e-04 GGTGACGAAC CGCAGCAG TGTCTATCGA chrX:20423875-20423995 56 1.57e-04 ATTTATAATA CGCTGCAG CCGAAATTTT chrX:12221667-12221787 67 1.57e-04 GAAGACTACG CGCTGCAG ATTTAGATAT chr2R:23652341-23652461 38 1.81e-04 AATAAATTCA GAGTGCTG GCGCCATCCA chr3R:31395379-31395499 46 1.81e-04 CAACAGTGAA GAGTGCTG TTAAATCGCT chr3L:7151992-7152112 76 1.99e-04 CCTCAGTGCA CGGAGCAG TTTTTATTGG chr2R:13430025-13430145 15 1.99e-04 TTGGTTGCCA GACCGCGG AAAGTAAGCG chrX:10582201-10582321 19 2.13e-04 atggatccaA CACGGCCG TGTGTGTCTG chr2R:9881483-9881603 110 2.34e-04 AAACAGCTTC GACAGCAG GTC chrX:3188568-3188688 112 2.72e-04 TAGAGATCTC GAGAGCAG C chr3L:2489597-2489717 105 2.89e-04 AGATGATACA GAGCGCAG TGGAAATG chr2R:20601237-20601357 62 3.04e-04 CATTAAATGC GAGTGCCG AGCACAACCT chr2R:11640741-11640861 13 3.04e-04 GGTGCACGGC GAGTGCCG ATAAGCTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23574928-23575048 1.2e-05 92_[+2]_20 chr2R:17272603-17272723 1.2e-05 23_[+2]_89 chrX:12015112-12015232 1.2e-05 19_[+2]_93 chr3L:1578615-1578735 1.6e-05 79_[+2]_33 chr2L:1980759-1980879 3.5e-05 38_[+2]_74 chrX:6037381-6037501 3.5e-05 74_[+2]_38 chr2R:16170825-16170945 3.5e-05 15_[+2]_97 chr3R:23942858-23942978 3.5e-05 66_[+2]_46 chr2R:21295576-21295696 4e-05 96_[+2]_16 chr2L:19508754-19508874 4e-05 58_[+2]_54 chr3R:21850213-21850333 4.7e-05 37_[+2]_75 chr2L:8424014-8424134 6.1e-05 50_[+2]_62 chr3R:23445396-23445516 7.1e-05 110_[+2]_2 chrX:16350182-16350302 7.1e-05 38_[+2]_74 chr3R:25004914-25005034 9.5e-05 100_[+2]_12 chr3L:745742-745862 9.5e-05 69_[+2]_43 chr3L:15565898-15566018 9.5e-05 73_[+2]_39 chr3R:29251606-29251726 9.5e-05 31_[+2]_81 chr3R:25624245-25624365 9.5e-05 73_[+2]_39 chr3R:28845258-28845378 0.00011 71_[+2]_41 chr2R:18125821-18125941 0.00013 27_[+2]_85 chr2R:21060669-21060789 0.00013 112_[+2] chr3L:9899174-9899294 0.00013 16_[+2]_96 chr3L:642895-643015 0.00013 101_[+2]_11 chrX:11807539-11807659 0.00014 14_[+2]_98 chr3L:6059218-6059338 0.00014 [+2]_112 chr2L:19058983-19059103 0.00014 10_[+2]_102 chr2L:4403151-4403271 0.00014 62_[+2]_50 chr2L:9911939-9912059 0.00014 62_[+2]_50 chrX:6590797-6590917 0.00016 25_[+2]_87 chrX:20423875-20423995 0.00016 55_[+2]_57 chrX:12221667-12221787 0.00016 66_[+2]_46 chr2R:23652341-23652461 0.00018 37_[+2]_75 chr3R:31395379-31395499 0.00018 45_[+2]_67 chr3L:7151992-7152112 0.0002 75_[+2]_37 chr2R:13430025-13430145 0.0002 14_[+2]_98 chrX:10582201-10582321 0.00021 18_[+2]_94 chr2R:9881483-9881603 0.00023 109_[+2]_3 chrX:3188568-3188688 0.00027 111_[+2]_1 chr3L:2489597-2489717 0.00029 104_[+2]_8 chr2R:20601237-20601357 0.0003 61_[+2]_51 chr2R:11640741-11640861 0.0003 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASHGCWG width=8 seqs=42 chr2R:23574928-23575048 ( 93) CACAGCTG 1 chr2R:17272603-17272723 ( 24) CACAGCTG 1 chrX:12015112-12015232 ( 20) CACAGCTG 1 chr3L:1578615-1578735 ( 80) CACCGCTG 1 chr2L:1980759-1980879 ( 39) CACTGCGG 1 chrX:6037381-6037501 ( 75) CACAGCGG 1 chr2R:16170825-16170945 ( 16) CAGTGCTG 1 chr3R:23942858-23942978 ( 67) CACAGCGG 1 chr2R:21295576-21295696 ( 97) CAGCGCTG 1 chr2L:19508754-19508874 ( 59) CAGCGCTG 1 chr3R:21850213-21850333 ( 38) CAGTGCGG 1 chr2L:8424014-8424134 ( 51) CACAGCAG 1 chr3R:23445396-23445516 ( 111) CGCAGCTG 1 chrX:16350182-16350302 ( 39) CACCGCAG 1 chr3R:25004914-25005034 ( 101) CAGTGCAG 1 chr3L:745742-745862 ( 70) CAGTGCAG 1 chr3L:15565898-15566018 ( 74) CACTGCCG 1 chr3R:29251606-29251726 ( 32) CGCCGCTG 1 chr3R:25624245-25624365 ( 74) CACTGCCG 1 chr3R:28845258-28845378 ( 72) CGCAGCGG 1 chr2R:18125821-18125941 ( 28) CAGGGCTG 1 chr2R:21060669-21060789 ( 113) CAGGGCTG 1 chr3L:9899174-9899294 ( 17) CAGGGCTG 1 chr3L:642895-643015 ( 102) CGGCGCTG 1 chrX:11807539-11807659 ( 15) CGGAGCGG 1 chr3L:6059218-6059338 ( 1) CGGTGCGG 1 chr2L:19058983-19059103 ( 11) GACTGCTG 1 chr2L:4403151-4403271 ( 63) GACAGCTG 1 chr2L:9911939-9912059 ( 63) GACAGCTG 1 chrX:6590797-6590917 ( 26) CGCAGCAG 1 chrX:20423875-20423995 ( 56) CGCTGCAG 1 chrX:12221667-12221787 ( 67) CGCTGCAG 1 chr2R:23652341-23652461 ( 38) GAGTGCTG 1 chr3R:31395379-31395499 ( 46) GAGTGCTG 1 chr3L:7151992-7152112 ( 76) CGGAGCAG 1 chr2R:13430025-13430145 ( 15) GACCGCGG 1 chrX:10582201-10582321 ( 19) CACGGCCG 1 chr2R:9881483-9881603 ( 110) GACAGCAG 1 chrX:3188568-3188688 ( 112) GAGAGCAG 1 chr3L:2489597-2489717 ( 105) GAGCGCAG 1 chr2R:20601237-20601357 ( 62) GAGTGCCG 1 chr2R:11640741-11640861 ( 13) GAGTGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 3.2e+002 -1204 203 56 -1204 126 -1204 42 -1204 -1204 160 134 -1204 17 7 -90 14 -1204 -1204 249 -1204 -1204 247 -1204 -1204 -28 -60 10 41 -1204 -1204 249 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 3.2e+002 0.000000 0.738095 0.261905 0.000000 0.761905 0.000000 0.238095 0.000000 0.000000 0.547619 0.452381 0.000000 0.357143 0.190476 0.095238 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.261905 0.119048 0.190476 0.428571 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASHGCWG MEME-2 regular expression -------------------------------------------------------------------------------- [CG][AG][CG][AT]GC[TA]G -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGCGCSC MEME-3 width = 8 sites = 9 llr = 99 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8a:::::: pos.-specific C 1::a:96a probability G 1:a:a14: matrix T :::::::: bits 2.5 *** * 2.2 *** * 2.0 **** * 1.7 ***** * Relative 1.5 ******* Entropy 1.2 ******* (15.9 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGCGCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19508754-19508874 93 3.42e-06 TGCTGAAAAG AAGCGCCC AACCATTCCG chr2R:21712049-21712169 83 3.42e-06 AAAATCCTGC AAGCGCCC CTGTAAGCTT chrX:6663261-6663381 42 3.42e-06 TCCCAAAGAA AAGCGCCC AAACGATTTC chr2R:18125821-18125941 8 6.78e-06 TGTTGGA AAGCGCGC GCGCAGAAGC chr3R:13840102-13840222 82 6.78e-06 ATTACAAAAA AAGCGCGC CACTTTTGAA chrX:16105820-16105940 76 6.78e-06 AGTTCTGCAA AAGCGCGC GTAGTAGCTA chr3R:29251606-29251726 63 1.06e-05 TTTACGGACA CAGCGCCC TCTGACATTT chr2L:10516733-10516853 95 1.45e-05 TGGTGCTGTA GAGCGCGC AGTTGTCAAT chr2R:13430025-13430145 28 1.78e-05 CGCGGAAAGT AAGCGGCC AAGAAATCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19508754-19508874 3.4e-06 92_[+3]_20 chr2R:21712049-21712169 3.4e-06 82_[+3]_30 chrX:6663261-6663381 3.4e-06 41_[+3]_71 chr2R:18125821-18125941 6.8e-06 7_[+3]_105 chr3R:13840102-13840222 6.8e-06 81_[+3]_31 chrX:16105820-16105940 6.8e-06 75_[+3]_37 chr3R:29251606-29251726 1.1e-05 62_[+3]_50 chr2L:10516733-10516853 1.4e-05 94_[+3]_18 chr2R:13430025-13430145 1.8e-05 27_[+3]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGCGCSC width=8 seqs=9 chr2L:19508754-19508874 ( 93) AAGCGCCC 1 chr2R:21712049-21712169 ( 83) AAGCGCCC 1 chrX:6663261-6663381 ( 42) AAGCGCCC 1 chr2R:18125821-18125941 ( 8) AAGCGCGC 1 chr3R:13840102-13840222 ( 82) AAGCGCGC 1 chrX:16105820-16105940 ( 76) AAGCGCGC 1 chr3R:29251606-29251726 ( 63) CAGCGCCC 1 chr2L:10516733-10516853 ( 95) GAGCGCGC 1 chr2R:13430025-13430145 ( 28) AAGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.7e+003 129 -70 -68 -982 165 -982 -982 -982 -982 -982 249 -982 -982 247 -982 -982 -982 -982 249 -982 -982 230 -68 -982 -982 162 132 -982 -982 247 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.7e+003 0.777778 0.111111 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCGCSC MEME-3 regular expression -------------------------------------------------------------------------------- AAGCGC[CG]C -------------------------------------------------------------------------------- Time 19.71 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCCKGGC MEME-4 width = 8 sites = 6 llr = 71 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 7:8a:::a probability G 3a2:7aa: matrix T ::::3::: bits 2.5 * * *** 2.2 * * *** 2.0 * * *** 1.7 *** *** Relative 1.5 **** *** Entropy 1.2 ******** (17.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGGGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8835076-8835196 40 1.08e-06 TGTTTGCCTT CGCCGGGC AAACACTTAT chr2L:9911939-9912059 78 1.08e-06 CTGTTCGCAA CGCCGGGC CGAACCGAAT chr3L:22163910-22164030 92 2.14e-06 TTTAAGTTGC GGCCGGGC TTCTGCCTTT chr2L:18666033-18666153 40 4.09e-06 AAAACTTATC CGCCTGGC GGCTAATCTG chr3R:23942858-23942978 113 5.15e-06 CTCCTGCTGG CGGCGGGC chrX:16350182-16350302 96 7.07e-06 CCCACATTAC GGCCTGGC AACACTGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8835076-8835196 1.1e-06 39_[+4]_73 chr2L:9911939-9912059 1.1e-06 77_[+4]_35 chr3L:22163910-22164030 2.1e-06 91_[+4]_21 chr2L:18666033-18666153 4.1e-06 39_[+4]_73 chr3R:23942858-23942978 5.2e-06 112_[+4] chrX:16350182-16350302 7.1e-06 95_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCCKGGC width=8 seqs=6 chr3L:8835076-8835196 ( 40) CGCCGGGC 1 chr2L:9911939-9912059 ( 78) CGCCGGGC 1 chr3L:22163910-22164030 ( 92) GGCCGGGC 1 chr2L:18666033-18666153 ( 40) CGCCTGGC 1 chr3R:23942858-23942978 ( 113) CGGCGGGC 1 chrX:16350182-16350302 ( 96) GGCCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 2.9e+003 -923 188 90 -923 -923 -923 249 -923 -923 220 -10 -923 -923 247 -923 -923 -923 -923 190 4 -923 -923 249 -923 -923 -923 249 -923 -923 247 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.9e+003 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCKGGC MEME-4 regular expression -------------------------------------------------------------------------------- [CG]GCC[GT]GGC -------------------------------------------------------------------------------- Time 25.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGCAC MEME-5 width = 8 sites = 2 llr = 26 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :::::a:a probability G aaaaa::: matrix T :::::::: bits 2.5 ****** * 2.2 ****** * 2.0 ****** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20601237-20601357 111 1.86e-06 TAAGAAAGAA GGGGGCAC CC chr2R:11792713-11792833 57 1.86e-06 GTCACCAAAG GGGGGCAC TCAAAGATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20601237-20601357 1.9e-06 110_[+5]_2 chr2R:11792713-11792833 1.9e-06 56_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGCAC width=8 seqs=2 chr2R:20601237-20601357 ( 111) GGGGGCAC 1 chr2R:11792713-11792833 ( 57) GGGGGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.4e+004 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 246 -765 -765 165 -765 -765 -765 -765 246 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCAC MEME-5 regular expression -------------------------------------------------------------------------------- GGGGGCAC -------------------------------------------------------------------------------- Time 31.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12261568-12261688 2.31e-02 120 chr3R:26859321-26859441 1.61e-01 120 chr3L:1167007-1167127 9.99e-01 120 chrX:8417159-8417279 9.83e-01 120 chr2L:7158944-7159064 1.10e-01 88_[+1(3.15e-05)]_24 chr3R:15644916-15645036 9.85e-03 120 chrX:16650573-16650693 9.59e-01 120 chr3L:6086174-6086294 8.98e-01 120 chr2R:20938394-20938514 2.76e-02 120 chrX:8677545-8677665 9.95e-01 120 chr2L:9911939-9912059 1.28e-04 77_[+4(1.08e-06)]_35 chrX:8409276-8409396 1.94e-02 120 chrX:11846467-11846587 8.06e-01 120 chrX:7703112-7703232 9.96e-01 120 chr2L:8554454-8554574 9.60e-01 120 chr2R:20126702-20126822 9.89e-01 120 chr3R:29699392-29699512 8.50e-01 120 chr3R:28327292-28327412 9.69e-01 120 chrX:6615589-6615709 9.83e-01 120 chr2R:14488725-14488845 6.87e-02 120 chr3L:623705-623825 9.56e-01 120 chrX:16105820-16105940 3.35e-02 75_[+3(6.78e-06)]_37 chr3L:4521859-4521979 3.27e-02 120 chr2R:18421209-18421329 8.09e-01 120 chrX:12221667-12221787 2.27e-01 120 chr3R:25624245-25624365 1.99e-02 73_[+2(9.52e-05)]_39 chr2R:21909958-21910078 1.81e-01 120 chr3L:7961343-7961463 1.33e-01 55_[+5(6.54e-05)]_57 chrX:8202894-8203014 6.47e-01 120 chr2R:20091279-20091399 8.01e-01 120 chr3R:8033109-8033229 9.35e-01 120 chr3L:721140-721260 4.39e-01 120 chr3R:24026227-24026347 6.59e-01 120 chr3R:10630170-10630290 2.10e-01 120 chrX:17473392-17473512 6.58e-01 120 chr3L:10337778-10337898 6.14e-01 120 chr3R:26235161-26235281 8.48e-01 120 chr2R:5757872-5757992 1.50e-01 120 chr2R:21091943-21092063 9.38e-01 120 chr2R:21514463-21514583 5.48e-01 120 chr3R:27440716-27440836 1.00e+00 120 chr3R:22367244-22367364 2.18e-01 120 chr3L:9028167-9028287 8.68e-01 120 chr2L:3841098-3841218 7.99e-01 120 chr2L:4403151-4403271 2.10e-01 120 chr3R:23763203-23763323 2.19e-01 120 chr2L:1428461-1428581 9.19e-01 120 chrX:771815-771935 5.84e-01 120 chrX:3745241-3745361 1.13e-02 120 chr2R:18883682-18883802 9.91e-01 120 chrX:2036947-2037067 8.46e-01 120 chr3R:9763209-9763329 3.10e-01 120 chr3R:14002101-14002221 1.00e+00 120 chr3R:7492137-7492257 8.51e-01 120 chr3L:20630821-20630941 1.36e-01 85_[+3(6.22e-05)]_27 chrX:12454489-12454609 7.91e-01 120 chr2R:22387700-22387820 3.63e-01 10_[+1(6.24e-05)]_102 chr2L:7628523-7628643 2.46e-01 112_[+4(8.51e-05)] chrX:12015112-12015232 1.95e-02 19_[+2(1.23e-05)]_93 chrX:9082683-9082803 3.45e-01 120 chrX:9119478-9119598 4.78e-01 120 chr2R:17272603-17272723 6.84e-04 23_[+2(1.23e-05)]_89 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chrX:17510556-17510676 9.73e-01 120 chrX:4610588-4610708 4.53e-01 120 chr2R:19146111-19146231 4.91e-01 120 chrX:19770237-19770357 4.83e-01 120 chrX:7333338-7333458 5.29e-02 110_[+1(1.13e-05)]_2 chr2R:7698953-7699073 1.62e-01 120 chr2L:20681855-20681975 2.95e-02 120 chr3R:25004914-25005034 3.02e-01 100_[+2(9.52e-05)]_12 chr2L:14022599-14022719 1.76e-01 120 chr3L:6059218-6059338 2.36e-01 120 chrX:6590797-6590917 6.42e-04 53_[+1(1.13e-05)]_59 chr2L:14245637-14245757 9.98e-01 120 chr3R:8301348-8301468 2.44e-01 120 chrX:2149662-2149782 5.94e-02 120 chr3R:26654714-26654834 8.92e-01 120 chr3R:5636835-5636955 4.70e-02 120 chrX:1907806-1907926 2.04e-01 120 chr3L:1350596-1350716 3.60e-01 120 chr3R:8886950-8887070 8.90e-01 120 chr3L:21517000-21517120 9.22e-01 120 chr3L:12803821-12803941 9.32e-01 120 chr3L:5974708-5974828 5.86e-02 63_[+1(5.12e-05)]_49 chr3L:2489597-2489717 3.73e-03 43_[+1(5.12e-05)]_69 chr3R:15676336-15676456 6.49e-03 98_[+1(1.13e-05)]_1_[+1(1.13e-05)]_\ 5 chr3R:28599646-28599766 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6_[+1(3.15e-05)]_10_[+1(3.15e-05)]_\ 23_[+1(3.15e-05)]_9_[+1(1.13e-05)]_40 chr3R:5319180-5319300 1.12e-02 83_[+1(5.12e-05)]_29 chr2L:19508754-19508874 4.17e-06 37_[+5(6.54e-05)]_13_[+2(4.00e-05)]_\ 13_[+2(3.47e-05)]_5_[+3(3.42e-06)]_20 chr2L:18900069-18900189 9.81e-01 120 chr2L:1980759-1980879 2.99e-03 38_[+2(3.47e-05)]_74 chrX:18635413-18635533 1.29e-01 120 chr2R:21295576-21295696 1.26e-02 96_[+2(4.00e-05)]_16 chr2R:21060669-21060789 1.44e-01 120 chrX:15844250-15844370 1.92e-01 120 chr2L:21163530-21163650 1.16e-01 120 chrX:11807539-11807659 1.56e-02 33_[+1(6.24e-05)]_22_[+1(9.46e-05)]_\ 49 chr3L:613662-613782 9.99e-01 120 chr2L:1473567-1473687 7.08e-01 120 chr2R:23652341-23652461 4.64e-03 120 chr3L:7151992-7152112 3.50e-02 120 chr2R:18125821-18125941 1.49e-04 7_[+3(6.78e-06)]_105 chr2L:10516733-10516853 1.38e-03 94_[+3(1.45e-05)]_18 chr3L:2472818-2472938 1.74e-01 101_[+1(6.24e-05)]_11 chr2L:18666033-18666153 1.18e-03 39_[+4(4.09e-06)]_73 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************