******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CHES-1-like.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:8072797-8072917 1.0000 120 chr3L:9629994-9630114 1.0000 120 chr2L:21629364-21629484 1.0000 120 chr2R:7932344-7932464 1.0000 120 chr2R:6811390-6811510 1.0000 120 chr3L:21634425-21634545 1.0000 120 chrX:11817715-11817835 1.0000 120 chr3L:8535122-8535242 1.0000 120 chr3L:3219028-3219148 1.0000 120 chr2R:7387224-7387344 1.0000 120 chr3R:24233944-24234064 1.0000 120 chr2R:12519056-12519176 1.0000 120 chr3R:10001300-10001420 1.0000 120 chr2R:16850328-16850448 1.0000 120 chr3R:18255418-18255538 1.0000 120 chr2L:9890783-9890903 1.0000 120 chr3R:24650042-24650162 1.0000 120 chr3R:14879353-14879473 1.0000 120 chrX:12611755-12611875 1.0000 120 chr2R:17430952-17431072 1.0000 120 chr2R:12569791-12569911 1.0000 120 chr2R:10122543-10122663 1.0000 120 chrX:9149106-9149226 1.0000 120 chrX:10478764-10478884 1.0000 120 chr2R:19669020-19669140 1.0000 120 chr3R:25983418-25983538 1.0000 120 chr3R:26056490-26056610 1.0000 120 chr3R:25033429-25033549 1.0000 120 chr3L:5365949-5366069 1.0000 120 chr2R:16011553-16011673 1.0000 120 chr3L:10631035-10631155 1.0000 120 chr2L:6914068-6914188 1.0000 120 chr2R:8922661-8922781 1.0000 120 chr3L:19618478-19618598 1.0000 120 chr3R:21660973-21661093 1.0000 120 chrX:13285468-13285588 1.0000 120 chr3R:18412356-18412476 1.0000 120 chrX:9283024-9283144 1.0000 120 chr3R:26912857-26912977 1.0000 120 chr3R:29724898-29725018 1.0000 120 chr3L:20226359-20226479 1.0000 120 chr3L:3374128-3374248 1.0000 120 chr2R:10429614-10429734 1.0000 120 chr3L:1802965-1803085 1.0000 120 chr3R:29223426-29223546 1.0000 120 chr3L:14038426-14038546 1.0000 120 chr2R:10645603-10645723 1.0000 120 chr2L:5724848-5724968 1.0000 120 chr3L:15514596-15514716 1.0000 120 chr3R:24226902-24227022 1.0000 120 chr3R:18928370-18928490 1.0000 120 chr3L:8405253-8405373 1.0000 120 chr3L:10679949-10680069 1.0000 120 chrX:19704185-19704305 1.0000 120 chr2L:19571688-19571808 1.0000 120 chr3L:17843078-17843198 1.0000 120 chr3L:16090455-16090575 1.0000 120 chr3L:2599523-2599643 1.0000 120 chr3R:15225439-15225559 1.0000 120 chr2R:24881610-24881730 1.0000 120 chr3R:23941776-23941896 1.0000 120 chrX:9319236-9319356 1.0000 120 chrX:13370956-13371076 1.0000 120 chr2R:24535371-24535491 1.0000 120 chr3R:26952383-26952503 1.0000 120 chr3L:199208-199328 1.0000 120 chr2L:3058831-3058951 1.0000 120 chr3L:17042662-17042782 1.0000 120 chr2L:7412329-7412449 1.0000 120 chrX:19348900-19349020 1.0000 120 chr3R:24032061-24032181 1.0000 120 chr2L:11130658-11130778 1.0000 120 chr3R:10854687-10854807 1.0000 120 chr3L:9367531-9367651 1.0000 120 chrX:16781173-16781293 1.0000 120 chr2L:182892-183012 1.0000 120 chr3L:21343654-21343774 1.0000 120 chr2L:11280246-11280366 1.0000 120 chr3L:1496468-1496588 1.0000 120 chrX:9082808-9082928 1.0000 120 chr3R:21214792-21214912 1.0000 120 chr3R:11869302-11869422 1.0000 120 chr3R:9637562-9637682 1.0000 120 chr2L:2214115-2214235 1.0000 120 chr2R:17062638-17062758 1.0000 120 chrX:13736220-13736340 1.0000 120 chr3L:6752334-6752454 1.0000 120 chr3L:8411693-8411813 1.0000 120 chrX:17107612-17107732 1.0000 120 chr2R:16856192-16856312 1.0000 120 chr3L:9838662-9838782 1.0000 120 chr2R:18167149-18167269 1.0000 120 chr3R:20253952-20254072 1.0000 120 chrX:656031-656151 1.0000 120 chr2L:7885397-7885517 1.0000 120 chr2L:1655833-1655953 1.0000 120 chr2R:13450478-13450598 1.0000 120 chr2R:17766711-17766831 1.0000 120 chr2L:1732264-1732384 1.0000 120 chrX:2073438-2073558 1.0000 120 chrX:17878957-17879077 1.0000 120 chr2R:16322117-16322237 1.0000 120 chr3R:31610964-31611084 1.0000 120 chrX:10472713-10472833 1.0000 120 chr2L:13829757-13829877 1.0000 120 chr3L:15163520-15163640 1.0000 120 chr2R:7939106-7939226 1.0000 120 chr3L:21216832-21216952 1.0000 120 chr3L:12116011-12116131 1.0000 120 chr3L:22871050-22871170 1.0000 120 chr3R:24630150-24630270 1.0000 120 chrX:4117502-4117622 1.0000 120 chrX:6091151-6091271 1.0000 120 chr3L:9854789-9854909 1.0000 120 chr2R:9116286-9116406 1.0000 120 chr3R:14316176-14316296 1.0000 120 chr2R:24779842-24779962 1.0000 120 chr3L:15837383-15837503 1.0000 120 chr3L:15563624-15563744 1.0000 120 chr3R:28811127-28811247 1.0000 120 chrX:10325955-10326075 1.0000 120 chr3L:13502592-13502712 1.0000 120 chr3R:9019948-9020068 1.0000 120 chrX:18499862-18499982 1.0000 120 chr2L:19792045-19792165 1.0000 120 chr2L:6852188-6852308 1.0000 120 chr3R:16050751-16050871 1.0000 120 chr2R:6636412-6636532 1.0000 120 chr3R:11679682-11679802 1.0000 120 chr2L:13296308-13296428 1.0000 120 chr2R:18172355-18172475 1.0000 120 chrX:8606266-8606386 1.0000 120 chr3R:19094155-19094275 1.0000 120 chr3L:20432482-20432602 1.0000 120 chr3L:16714212-16714332 1.0000 120 chrX:6820863-6820983 1.0000 120 chr2R:15934729-15934849 1.0000 120 chr3L:3411742-3411862 1.0000 120 chr2L:155222-155342 1.0000 120 chr3R:23931474-23931594 1.0000 120 chr2L:3862631-3862751 1.0000 120 chr2R:17698291-17698411 1.0000 120 chrX:11325254-11325374 1.0000 120 chr3R:6383027-6383147 1.0000 120 chr2L:3466097-3466217 1.0000 120 chr3L:14002065-14002185 1.0000 120 chr2L:17384630-17384750 1.0000 120 chr3L:4108433-4108553 1.0000 120 chr2R:24571631-24571751 1.0000 120 chr3L:7125526-7125646 1.0000 120 chr3L:18901505-18901625 1.0000 120 chr3R:10331202-10331322 1.0000 120 chrX:7710916-7711036 1.0000 120 chr2R:23865310-23865430 1.0000 120 chr3R:26945432-26945552 1.0000 120 chr2R:16848217-16848337 1.0000 120 chr3R:13676555-13676675 1.0000 120 chr3R:27559135-27559255 1.0000 120 chr2L:2767836-2767956 1.0000 120 chrX:11709922-11710042 1.0000 120 chr3R:11581543-11581663 1.0000 120 chr3R:13645198-13645318 1.0000 120 chr2L:6854116-6854236 1.0000 120 chr2R:21160558-21160678 1.0000 120 chr2R:16202889-16203009 1.0000 120 chr3L:8315283-8315403 1.0000 120 chr2L:19735939-19736059 1.0000 120 chr3L:9968392-9968512 1.0000 120 chr2L:14359045-14359165 1.0000 120 chr3R:22367197-22367317 1.0000 120 chr3R:24360107-24360227 1.0000 120 chr2L:2217202-2217322 1.0000 120 chr3R:8801419-8801539 1.0000 120 chr2L:7388201-7388321 1.0000 120 chr3L:18109619-18109739 1.0000 120 chr3R:18663643-18663763 1.0000 120 chr3R:31745895-31746015 1.0000 120 chr2R:7806380-7806500 1.0000 120 chrX:487652-487772 1.0000 120 chr2R:18660618-18660738 1.0000 120 chr3R:11431683-11431803 1.0000 120 chr2L:6956901-6957021 1.0000 120 chr2R:9103168-9103288 1.0000 120 chr2L:11809109-11809229 1.0000 120 chr3R:29806972-29807092 1.0000 120 chr3R:18226093-18226213 1.0000 120 chr3L:17668994-17669114 1.0000 120 chr2L:12108872-12108992 1.0000 120 chr2L:10437472-10437592 1.0000 120 chr3R:30052572-30052692 1.0000 120 chr2R:11679350-11679470 1.0000 120 chr2R:17586064-17586184 1.0000 120 chr3R:9874650-9874770 1.0000 120 chrX:1349306-1349426 1.0000 120 chr2L:156097-156217 1.0000 120 chr2R:21128467-21128587 1.0000 120 chr2L:5542255-5542375 1.0000 120 chr2R:24086500-24086620 1.0000 120 chr2R:21011873-21011993 1.0000 120 chr2L:22168548-22168668 1.0000 120 chr2R:9842539-9842659 1.0000 120 chrX:6663260-6663380 1.0000 120 chr2R:17514149-17514269 1.0000 120 chr3L:16129554-16129674 1.0000 120 chr2R:9692778-9692898 1.0000 120 chr2L:9938124-9938244 1.0000 120 chr2R:17412692-17412812 1.0000 120 chr2L:3373457-3373577 1.0000 120 chrX:16610643-16610763 1.0000 120 chr3L:16149800-16149920 1.0000 120 chr3L:3149338-3149458 1.0000 120 chr3R:23679969-23680089 1.0000 120 chr2R:23702408-23702528 1.0000 120 chr3L:8763254-8763374 1.0000 120 chr3L:20276715-20276835 1.0000 120 chr2L:1710399-1710519 1.0000 120 chrX:18863798-18863918 1.0000 120 chrX:13253146-13253266 1.0000 120 chrX:6678162-6678282 1.0000 120 chr2R:17536486-17536606 1.0000 120 chr2R:8928065-8928185 1.0000 120 chr2R:9847843-9847963 1.0000 120 chr3L:10866680-10866800 1.0000 120 chrX:15986835-15986955 1.0000 120 chr3L:17846402-17846522 1.0000 120 chr2L:21619331-21619451 1.0000 120 chr2R:7071088-7071208 1.0000 120 chr3R:5613069-5613189 1.0000 120 chr2R:10899034-10899154 1.0000 120 chrX:4366340-4366460 1.0000 120 chr2R:15135478-15135598 1.0000 120 chr3L:11258519-11258639 1.0000 120 chr2R:23970048-23970168 1.0000 120 chr2R:10813292-10813412 1.0000 120 chr2L:13882072-13882192 1.0000 120 chr3L:8675364-8675484 1.0000 120 chr3R:15243568-15243688 1.0000 120 chr2R:11279699-11279819 1.0000 120 chr3L:5152596-5152716 1.0000 120 chrX:13822124-13822244 1.0000 120 chr2L:21102574-21102694 1.0000 120 chr2R:10739809-10739929 1.0000 120 chr3L:14028596-14028716 1.0000 120 chr2R:24763067-24763187 1.0000 120 chrX:12654499-12654619 1.0000 120 chr3L:292307-292427 1.0000 120 chr2L:14355087-14355207 1.0000 120 chr3R:7092118-7092238 1.0000 120 chr2R:17683446-17683566 1.0000 120 chr3L:16574476-16574596 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CHES-1-like/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CHES-1-like.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.218 G 0.214 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.218 G 0.214 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 65 llr = 574 E-value = 3.6e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::a17 pos.-specific C 1::a:::: probability G ::::a::2 matrix T 8:a:::92 bits 2.2 ** 2.0 ** 1.8 * *** 1.6 ***** Relative 1.3 ****** Entropy 1.1 ******* (12.7 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5613069-5613189 75 2.45e-05 ACAGCGTTGG TATCGATA GTAGTTAGTT chr2L:21619331-21619451 44 2.45e-05 cagtattatc tatcgata tcccagaaaa chrX:6678162-6678282 37 2.45e-05 AACGGTCTGC TATCGATA GTTGTAGTTT chr2R:17412692-17412812 55 2.45e-05 CAGCACTAGT TATCGATA TAATCAGAGA chr2R:24086500-24086620 83 2.45e-05 tctgtgtctc tatcgata CCCGCGTGTG chr2L:5542255-5542375 85 2.45e-05 ATCGTTAAGT TATCGATA GTTGTGCACA chr2R:21128467-21128587 28 2.45e-05 ATTGTTGTGT TATCGATA CGCCGATAGG chr2R:11679350-11679470 84 2.45e-05 GATAATTAAA TATCGATA AGGCGGTTAA chr3R:18226093-18226213 49 2.45e-05 ATTTGATTTG TATCGATA TGCAGGCTCA chr2L:6956901-6957021 72 2.45e-05 CCCTGGCAGA TATCGATA GGCCCATCGA chr2R:18660618-18660738 48 2.45e-05 ACAGCTTACT TATCGATA AAAGTATTTC chr2L:2217202-2217322 18 2.45e-05 CCTACCAGCT TATCGATA AAACGAATTA chr2L:19735939-19736059 38 2.45e-05 AGAAGACGAC TATCGATA GGCGCGGCGT chr2R:21160558-21160678 59 2.45e-05 AATTCGCTGA TATCGATA TTTTCACGCA chr3R:11581543-11581663 13 2.45e-05 CTCTACAAAG TATCGATA ACTTCAGCGA chr2R:23865310-23865430 81 2.45e-05 AATCCAGCGC TATCGATA ACATTCGGCC chr3L:7125526-7125646 47 2.45e-05 CCCTCGCACT TATCGATA ACACATACTG chrX:11325254-11325374 90 2.45e-05 GAACACTCAC TATCGATA GGCCGTGTCT chr2R:6636412-6636532 90 2.45e-05 CGATACCTCA TATCGATA TACGGTCCAA chr2L:19792045-19792165 42 2.45e-05 AGTATCCAAT TATCGATA TATTGCCTGA chr3L:12116011-12116131 21 2.45e-05 AATGTTAAAT TATCGATA AGCCAAACCA chr2L:13829757-13829877 10 2.45e-05 ATTTCGTTA TATCGATA TTTTTCGATT chrX:656031-656151 20 2.45e-05 GTGCGATATG TATCGATA ATTGAATGCC chr2L:2214115-2214235 96 2.45e-05 TATATTCACT TATCGATA TTAGAAACCA chr3R:9637562-9637682 69 2.45e-05 TCTTTGCGCA TATCGATA GTTGCTTACC chr2R:10429614-10429734 74 2.45e-05 TCGGAATAGA TATCGATA TCATCGAATG chr3L:3374128-3374248 94 2.45e-05 ATCGGACCAC TATCGATA GGCGGATGCA chr3R:18255418-18255538 79 2.45e-05 GCGAAGAAGC TATCGATA GGTGGGTCGC chr2R:16850328-16850448 37 2.45e-05 GGCAGGGATG TATCGATA ACACAAATCA chrX:12654499-12654619 79 4.29e-05 AAATATCGTA TATCGATG TCTGTCTGTG chrX:11709922-11710042 22 4.29e-05 CACACCATGC TATCGATG CATAGACATC chr2R:16848217-16848337 5 4.29e-05 TGTG TATCGATG TTTGTGAATG chr2L:7885397-7885517 38 4.29e-05 TAGGCAGAAA TATCGATG GCACAGCACA chr3L:6752334-6752454 107 4.29e-05 GCCGCTGATT TATCGATG TCTGCC chrX:13736220-13736340 58 4.29e-05 TAATCGATAC TATCGATG TTTGCTGCAC chr2R:17062638-17062758 72 4.29e-05 CGCCGGCATA TATCGATG AATGAAGATC chr3R:15225439-15225559 25 4.29e-05 ACCCCAAATA TATCGATG TAAACCACAA chr3L:8405253-8405373 36 4.29e-05 CATTTAAGAC TATCGATG TTTTTAGGTT chr2R:10122543-10122663 26 4.29e-05 CAAACTTTGG TATCGATG GCCGTCGATA chr2R:17514149-17514269 60 6.74e-05 CAGTTGGGGA TATCGATT ATTGCCAAAT chr2L:2767836-2767956 35 6.74e-05 CTGCCAGTGC TATCGATT CTTCTTACGG chr2L:17384630-17384750 49 6.74e-05 TAGCCGCAAC TATCGATT GGCGCGCTGC chr2R:16856192-16856312 31 6.74e-05 GCTGCAATAC TATCGATT GTGACACCTC chr2R:24535371-24535491 73 6.74e-05 TATCGAGCGC TATCGATT TCTATTTGCG chr3R:29724898-29725018 77 6.74e-05 TAGAGACTGC TATCGATT ACACAGATTA chr2R:17430952-17431072 67 6.74e-05 GTCGCTTACC TATCGATT GCTGTTCTCA chrX:16610643-16610763 26 8.62e-05 TTGCGATAGA CATCGATA GCCGTTCCAG chr3L:16129554-16129674 7 8.62e-05 CAGATA CATCGATA TGTTGACGCA chr3L:21216832-21216952 17 8.62e-05 TGGTGTATGT CATCGATA CCACGATACA chr3R:29223426-29223546 82 8.62e-05 CGTGTGTAGT CATCGATA GCATTCTGTT chr2R:23970048-23970168 36 1.11e-04 GAGTCTGAAC TATCGAAA GTAAACAGCA chr2R:13450478-13450598 15 1.11e-04 TGGCGTCAGT TATCGAAA TGCTGCCATG chrX:13370956-13371076 4 1.11e-04 GTC TATCGAAA GTTTGGCTGC chr3L:19618478-19618598 52 1.11e-04 TGCAAGTTTG TATCGAAA CTATCGTTAC chr2R:7932344-7932464 23 1.11e-04 TTACGTTGTC TATCGAAA CATATGTGGC chr2R:15934729-15934849 10 1.25e-04 TCAATGTTT CATCGATG AAATACCAAC chr2L:10437472-10437592 109 1.68e-04 TCTAGAAACA CATCGATT AACG chr3R:8801419-8801539 108 1.68e-04 TGGCTGCAAG CATCGATT AAATA chr3R:9019948-9020068 105 1.68e-04 GTGTATAGCA AATCGATA ACAATGCG chr3L:2599523-2599643 87 1.68e-04 AGCTCGCTGC AATCGATA ACCGTGAAGT chrX:10478764-10478884 3 1.68e-04 AT CATCGATT GCTAGCTGCG chr2L:9890783-9890903 48 1.68e-04 GGTAGCAAAC AATCGATA TTAATATCAA chrX:4366340-4366460 26 1.87e-04 GCTGAACGCT TACCGATA ATCATCGACG chr3L:18901505-18901625 83 1.87e-04 TGTGTTACTA TACCGATA ATGAAATGCG chrX:18863798-18863918 75 2.30e-04 CTATTGACCT TATCGAAT ATTCAGCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5613069-5613189 2.4e-05 74_[+1]_38 chr2L:21619331-21619451 2.4e-05 43_[+1]_69 chrX:6678162-6678282 2.4e-05 36_[+1]_76 chr2R:17412692-17412812 2.4e-05 54_[+1]_58 chr2R:24086500-24086620 2.4e-05 82_[+1]_30 chr2L:5542255-5542375 2.4e-05 84_[+1]_28 chr2R:21128467-21128587 2.4e-05 27_[+1]_85 chr2R:11679350-11679470 2.4e-05 83_[+1]_29 chr3R:18226093-18226213 2.4e-05 48_[+1]_64 chr2L:6956901-6957021 2.4e-05 71_[+1]_41 chr2R:18660618-18660738 2.4e-05 47_[+1]_65 chr2L:2217202-2217322 2.4e-05 17_[+1]_95 chr2L:19735939-19736059 2.4e-05 37_[+1]_75 chr2R:21160558-21160678 2.4e-05 58_[+1]_54 chr3R:11581543-11581663 2.4e-05 12_[+1]_100 chr2R:23865310-23865430 2.4e-05 80_[+1]_32 chr3L:7125526-7125646 2.4e-05 46_[+1]_66 chrX:11325254-11325374 2.4e-05 89_[+1]_23 chr2R:6636412-6636532 2.4e-05 89_[+1]_23 chr2L:19792045-19792165 2.4e-05 41_[+1]_71 chr3L:12116011-12116131 2.4e-05 20_[+1]_92 chr2L:13829757-13829877 2.4e-05 9_[+1]_103 chrX:656031-656151 2.4e-05 19_[+1]_93 chr2L:2214115-2214235 2.4e-05 95_[+1]_17 chr3R:9637562-9637682 2.4e-05 68_[+1]_44 chr2R:10429614-10429734 2.4e-05 73_[+1]_39 chr3L:3374128-3374248 2.4e-05 93_[+1]_19 chr3R:18255418-18255538 2.4e-05 78_[+1]_34 chr2R:16850328-16850448 2.4e-05 36_[+1]_76 chrX:12654499-12654619 4.3e-05 78_[+1]_34 chrX:11709922-11710042 4.3e-05 21_[+1]_91 chr2R:16848217-16848337 4.3e-05 4_[+1]_108 chr2L:7885397-7885517 4.3e-05 37_[+1]_75 chr3L:6752334-6752454 4.3e-05 106_[+1]_6 chrX:13736220-13736340 4.3e-05 57_[+1]_55 chr2R:17062638-17062758 4.3e-05 71_[+1]_41 chr3R:15225439-15225559 4.3e-05 24_[+1]_88 chr3L:8405253-8405373 4.3e-05 35_[+1]_77 chr2R:10122543-10122663 4.3e-05 25_[+1]_87 chr2R:17514149-17514269 6.7e-05 59_[+1]_53 chr2L:2767836-2767956 6.7e-05 34_[+1]_78 chr2L:17384630-17384750 6.7e-05 48_[+1]_64 chr2R:16856192-16856312 6.7e-05 30_[+1]_82 chr2R:24535371-24535491 6.7e-05 72_[+1]_40 chr3R:29724898-29725018 6.7e-05 76_[+1]_36 chr2R:17430952-17431072 6.7e-05 66_[+1]_46 chrX:16610643-16610763 8.6e-05 25_[+1]_87 chr3L:16129554-16129674 8.6e-05 6_[+1]_106 chr3L:21216832-21216952 8.6e-05 16_[+1]_96 chr3R:29223426-29223546 8.6e-05 81_[+1]_31 chr2R:23970048-23970168 0.00011 35_[+1]_77 chr2R:13450478-13450598 0.00011 14_[+1]_98 chrX:13370956-13371076 0.00011 3_[+1]_109 chr3L:19618478-19618598 0.00011 51_[+1]_61 chr2R:7932344-7932464 0.00011 22_[+1]_90 chr2R:15934729-15934849 0.00012 9_[+1]_103 chr2L:10437472-10437592 0.00017 108_[+1]_4 chr3R:8801419-8801539 0.00017 107_[+1]_5 chr3R:9019948-9020068 0.00017 104_[+1]_8 chr3L:2599523-2599643 0.00017 86_[+1]_26 chrX:10478764-10478884 0.00017 2_[+1]_110 chr2L:9890783-9890903 0.00017 47_[+1]_65 chrX:4366340-4366460 0.00019 25_[+1]_87 chr3L:18901505-18901625 0.00019 82_[+1]_30 chrX:18863798-18863918 0.00023 74_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=65 chr3R:5613069-5613189 ( 75) TATCGATA 1 chr2L:21619331-21619451 ( 44) TATCGATA 1 chrX:6678162-6678282 ( 37) TATCGATA 1 chr2R:17412692-17412812 ( 55) TATCGATA 1 chr2R:24086500-24086620 ( 83) TATCGATA 1 chr2L:5542255-5542375 ( 85) TATCGATA 1 chr2R:21128467-21128587 ( 28) TATCGATA 1 chr2R:11679350-11679470 ( 84) TATCGATA 1 chr3R:18226093-18226213 ( 49) TATCGATA 1 chr2L:6956901-6957021 ( 72) TATCGATA 1 chr2R:18660618-18660738 ( 48) TATCGATA 1 chr2L:2217202-2217322 ( 18) TATCGATA 1 chr2L:19735939-19736059 ( 38) TATCGATA 1 chr2R:21160558-21160678 ( 59) TATCGATA 1 chr3R:11581543-11581663 ( 13) TATCGATA 1 chr2R:23865310-23865430 ( 81) TATCGATA 1 chr3L:7125526-7125646 ( 47) TATCGATA 1 chrX:11325254-11325374 ( 90) TATCGATA 1 chr2R:6636412-6636532 ( 90) TATCGATA 1 chr2L:19792045-19792165 ( 42) TATCGATA 1 chr3L:12116011-12116131 ( 21) TATCGATA 1 chr2L:13829757-13829877 ( 10) TATCGATA 1 chrX:656031-656151 ( 20) TATCGATA 1 chr2L:2214115-2214235 ( 96) TATCGATA 1 chr3R:9637562-9637682 ( 69) TATCGATA 1 chr2R:10429614-10429734 ( 74) TATCGATA 1 chr3L:3374128-3374248 ( 94) TATCGATA 1 chr3R:18255418-18255538 ( 79) TATCGATA 1 chr2R:16850328-16850448 ( 37) TATCGATA 1 chrX:12654499-12654619 ( 79) TATCGATG 1 chrX:11709922-11710042 ( 22) TATCGATG 1 chr2R:16848217-16848337 ( 5) TATCGATG 1 chr2L:7885397-7885517 ( 38) TATCGATG 1 chr3L:6752334-6752454 ( 107) TATCGATG 1 chrX:13736220-13736340 ( 58) TATCGATG 1 chr2R:17062638-17062758 ( 72) TATCGATG 1 chr3R:15225439-15225559 ( 25) TATCGATG 1 chr3L:8405253-8405373 ( 36) TATCGATG 1 chr2R:10122543-10122663 ( 26) TATCGATG 1 chr2R:17514149-17514269 ( 60) TATCGATT 1 chr2L:2767836-2767956 ( 35) TATCGATT 1 chr2L:17384630-17384750 ( 49) TATCGATT 1 chr2R:16856192-16856312 ( 31) TATCGATT 1 chr2R:24535371-24535491 ( 73) TATCGATT 1 chr3R:29724898-29725018 ( 77) TATCGATT 1 chr2R:17430952-17431072 ( 67) TATCGATT 1 chrX:16610643-16610763 ( 26) CATCGATA 1 chr3L:16129554-16129674 ( 7) CATCGATA 1 chr3L:21216832-21216952 ( 17) CATCGATA 1 chr3R:29223426-29223546 ( 82) CATCGATA 1 chr2R:23970048-23970168 ( 36) TATCGAAA 1 chr2R:13450478-13450598 ( 15) TATCGAAA 1 chrX:13370956-13371076 ( 4) TATCGAAA 1 chr3L:19618478-19618598 ( 52) TATCGAAA 1 chr2R:7932344-7932464 ( 23) TATCGAAA 1 chr2R:15934729-15934849 ( 10) CATCGATG 1 chr2L:10437472-10437592 ( 109) CATCGATT 1 chr3R:8801419-8801539 ( 108) CATCGATT 1 chr3R:9019948-9020068 ( 105) AATCGATA 1 chr3L:2599523-2599643 ( 87) AATCGATA 1 chrX:10478764-10478884 ( 3) CATCGATT 1 chr2L:9890783-9890903 ( 48) AATCGATA 1 chrX:4366340-4366460 ( 26) TACCGATA 1 chr3L:18901505-18901625 ( 83) TACCGATA 1 chrX:18863798-18863918 ( 75) TATCGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.51346 E= 3.6e-036 -262 -82 -1267 155 181 -1267 -1267 -1267 -1267 -282 -1267 177 -1267 220 -1267 -1267 -1267 -1267 223 -1267 181 -1267 -1267 -1267 -162 -1267 -1267 168 122 -1267 -34 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 3.6e-036 0.046154 0.123077 0.000000 0.830769 1.000000 0.000000 0.000000 0.000000 0.000000 0.030769 0.000000 0.969231 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.092308 0.000000 0.000000 0.907692 0.661538 0.000000 0.169231 0.169231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGRCC MEME-2 width = 8 sites = 35 llr = 331 E-value = 7.9e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:::6:: pos.-specific C ::::::9a probability G 9:a:831: matrix T :9:a2::: bits 2.2 * * 2.0 * * 1.8 ** ** 1.6 ***** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14355087-14355207 61 1.07e-05 CAATTGCTCA GTGTGACC GCAGGAAACC chr3L:17846402-17846522 84 1.07e-05 CCGCGAACCA GTGTGACC GCATTGCGAC chrX:18863798-18863918 17 1.07e-05 ATGAATGTCA GTGTGACC GTCATTTGAA chr2L:1710399-1710519 44 1.07e-05 GCTTGAGCCA GTGTGACC ATGGAGCCGG chr2L:5542255-5542375 27 1.07e-05 GCGCAGAGCA GTGTGACC GAAGTACGTT chr3R:24360107-24360227 18 1.07e-05 GTGATATTAA GTGTGACC GCGGAATGGC chr3R:27559135-27559255 2 1.07e-05 G GTGTGACC GTTCGCAGAA chr3L:7125526-7125646 100 1.07e-05 CCGGCCTTAA GTGTGACC AGACAAAATG chr3L:14002065-14002185 68 1.07e-05 CTCCGCTGTA GTGTGACC GTCTTCGGTT chr2L:3466097-3466217 33 1.07e-05 TGCGGCATAG GTGTGACC ACTACCTCGA chrX:6820863-6820983 22 1.07e-05 GCGAGCGTCA GTGTGACC AGGCGGCGGT chr3R:9019948-9020068 57 1.07e-05 ACTGCGCGAA GTGTGACC GTAGTGTGGA chr2L:11130658-11130778 55 1.07e-05 CCGCTAGCAA GTGTGACC GTGGGTTGGC chr3R:25033429-25033549 49 1.07e-05 AGGCGGATGA GTGTGACC AGACCGCTAA chr2L:8072797-8072917 37 1.07e-05 AAAGCGTCCA GTGTGACC AGTGCTGACT chr2L:3373457-3373577 12 1.87e-05 ATTTTGTATA GTGTGGCC ATATGATGTT chr2R:23865310-23865430 31 1.87e-05 TGGCCGACCA GTGTGGCC AGCGTCGCGC chr2R:17698291-17698411 67 1.87e-05 CAAATACGCA GTGTGGCC AGGCAGCAGC chr3L:1802965-1803085 96 1.87e-05 AACTGCAGAT GTGTGGCC AGACTTCGGG chr3R:10001300-10001420 65 1.87e-05 AACTTATTTG GTGTGGCC ACTTTATAAC chr3R:21660973-21661093 40 3.29e-05 AAATCGCTCG GTGTTACC AGCTGACTTC chr2L:9938124-9938244 92 4.35e-05 TTTAATTTCT GTGTTGCC CAACATTAGA chr2R:17586064-17586184 82 4.35e-05 AATTAACTCA GTGTTGCC TGTCGTTGAG chr2R:11679350-11679470 10 4.35e-05 CTATTTTCA GTGTTGCC ACAGCCATTT chr2R:16202889-16203009 34 4.35e-05 CCAGCGATCA GTGTTGCC AATTTAGCTT chrX:4117502-4117622 2 4.35e-05 A GTGTTGCC ACTGACAACA chr2R:10739809-10739929 16 5.77e-05 GCATTCCCTA ATGTGACC ATGGTTGGCC chr2R:9103168-9103288 45 5.77e-05 ACTAAATGCA ATGTGACC GTGCTGCTGA chrX:10325955-10326075 16 6.84e-05 CGCAATGCCG ATGTGGCC AGTGGTCACA chr2L:6914068-6914188 29 6.84e-05 TAGTCTAATA ATGTGGCC GTACCCGATG chr3R:19094155-19094275 108 8.95e-05 GACTCGATTA GAGTGACC GTTGT chr2R:16322117-16322237 4 8.95e-05 TTA GAGTGACC AAAATCCGAT chr3R:26952383-26952503 98 8.95e-05 CATGTTAGAA GTGTGAGC AAAACAAAAA chr3R:25983418-25983538 64 8.95e-05 CGCTCTGTCA GTGTGAGC TCTCAATCAA chr3L:21343654-21343774 57 9.77e-05 TTTGTGGCAA GTGTGCCC GTTGGCTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14355087-14355207 1.1e-05 60_[+2]_52 chr3L:17846402-17846522 1.1e-05 83_[+2]_29 chrX:18863798-18863918 1.1e-05 16_[+2]_96 chr2L:1710399-1710519 1.1e-05 43_[+2]_69 chr2L:5542255-5542375 1.1e-05 26_[+2]_86 chr3R:24360107-24360227 1.1e-05 17_[+2]_95 chr3R:27559135-27559255 1.1e-05 1_[+2]_111 chr3L:7125526-7125646 1.1e-05 99_[+2]_13 chr3L:14002065-14002185 1.1e-05 67_[+2]_45 chr2L:3466097-3466217 1.1e-05 32_[+2]_80 chrX:6820863-6820983 1.1e-05 21_[+2]_91 chr3R:9019948-9020068 1.1e-05 56_[+2]_56 chr2L:11130658-11130778 1.1e-05 54_[+2]_58 chr3R:25033429-25033549 1.1e-05 48_[+2]_64 chr2L:8072797-8072917 1.1e-05 36_[+2]_76 chr2L:3373457-3373577 1.9e-05 11_[+2]_101 chr2R:23865310-23865430 1.9e-05 30_[+2]_82 chr2R:17698291-17698411 1.9e-05 66_[+2]_46 chr3L:1802965-1803085 1.9e-05 95_[+2]_17 chr3R:10001300-10001420 1.9e-05 64_[+2]_48 chr3R:21660973-21661093 3.3e-05 39_[+2]_73 chr2L:9938124-9938244 4.4e-05 91_[+2]_21 chr2R:17586064-17586184 4.4e-05 81_[+2]_31 chr2R:11679350-11679470 4.4e-05 9_[+2]_103 chr2R:16202889-16203009 4.4e-05 33_[+2]_79 chrX:4117502-4117622 4.4e-05 1_[+2]_111 chr2R:10739809-10739929 5.8e-05 15_[+2]_97 chr2R:9103168-9103288 5.8e-05 44_[+2]_68 chrX:10325955-10326075 6.8e-05 15_[+2]_97 chr2L:6914068-6914188 6.8e-05 28_[+2]_84 chr3R:19094155-19094275 9e-05 107_[+2]_5 chr2R:16322117-16322237 9e-05 3_[+2]_109 chr3R:26952383-26952503 9e-05 97_[+2]_15 chr3R:25983418-25983538 9e-05 63_[+2]_49 chr3L:21343654-21343774 9.8e-05 56_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGRCC width=8 seqs=35 chr2L:14355087-14355207 ( 61) GTGTGACC 1 chr3L:17846402-17846522 ( 84) GTGTGACC 1 chrX:18863798-18863918 ( 17) GTGTGACC 1 chr2L:1710399-1710519 ( 44) GTGTGACC 1 chr2L:5542255-5542375 ( 27) GTGTGACC 1 chr3R:24360107-24360227 ( 18) GTGTGACC 1 chr3R:27559135-27559255 ( 2) GTGTGACC 1 chr3L:7125526-7125646 ( 100) GTGTGACC 1 chr3L:14002065-14002185 ( 68) GTGTGACC 1 chr2L:3466097-3466217 ( 33) GTGTGACC 1 chrX:6820863-6820983 ( 22) GTGTGACC 1 chr3R:9019948-9020068 ( 57) GTGTGACC 1 chr2L:11130658-11130778 ( 55) GTGTGACC 1 chr3R:25033429-25033549 ( 49) GTGTGACC 1 chr2L:8072797-8072917 ( 37) GTGTGACC 1 chr2L:3373457-3373577 ( 12) GTGTGGCC 1 chr2R:23865310-23865430 ( 31) GTGTGGCC 1 chr2R:17698291-17698411 ( 67) GTGTGGCC 1 chr3L:1802965-1803085 ( 96) GTGTGGCC 1 chr3R:10001300-10001420 ( 65) GTGTGGCC 1 chr3R:21660973-21661093 ( 40) GTGTTACC 1 chr2L:9938124-9938244 ( 92) GTGTTGCC 1 chr2R:17586064-17586184 ( 82) GTGTTGCC 1 chr2R:11679350-11679470 ( 10) GTGTTGCC 1 chr2R:16202889-16203009 ( 34) GTGTTGCC 1 chrX:4117502-4117622 ( 2) GTGTTGCC 1 chr2R:10739809-10739929 ( 16) ATGTGACC 1 chr2R:9103168-9103288 ( 45) ATGTGACC 1 chrX:10325955-10326075 ( 16) ATGTGGCC 1 chr2L:6914068-6914188 ( 29) ATGTGGCC 1 chr3R:19094155-19094275 ( 108) GAGTGACC 1 chr2R:16322117-16322237 ( 4) GAGTGACC 1 chr3R:26952383-26952503 ( 98) GTGTGAGC 1 chr3R:25983418-25983538 ( 64) GTGTGAGC 1 chr3L:21343654-21343774 ( 57) GTGTGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 7.9e-014 -131 -1177 205 -1177 -231 -1177 -1177 173 -1177 -1177 222 -1177 -1177 -1177 -1177 182 -1177 -1177 195 -73 114 -293 68 -1177 -1177 212 -190 -1177 -1177 220 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 7.9e-014 0.114286 0.000000 0.885714 0.000000 0.057143 0.000000 0.000000 0.942857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.828571 0.171429 0.628571 0.028571 0.342857 0.000000 0.000000 0.942857 0.057143 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 regular expression -------------------------------------------------------------------------------- GTGTG[AG]CC -------------------------------------------------------------------------------- Time 13.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-3 width = 8 sites = 26 llr = 267 E-value = 2.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a:9: pos.-specific C ::1a:a:a probability G aa:::::: matrix T ::8:::1: bits 2.2 * * * * 2.0 ** * * * 1.8 ** *** * 1.6 ** *** * Relative 1.3 ** ***** Entropy 1.1 ** ***** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24763067-24763187 94 1.09e-05 ATAAGCATAC GGTCACAC TTAGAGTCTC chr2R:23702408-23702528 88 1.09e-05 ATCTGAGCAC GGTCACAC TGCCCAAGAG chr2R:9842539-9842659 28 1.09e-05 TTTATCGCAC GGTCACAC TGCATAACGT chr2R:21011873-21011993 103 1.09e-05 GTACGACGTC GGTCACAC TGGCAAATTG chr2L:156097-156217 69 1.09e-05 TTCGAACTCT GGTCACAC AGCCATACAG chr2R:9103168-9103288 75 1.09e-05 GTGTTGCGGT GGTCACAC TGCGTCGGGG chr2R:7806380-7806500 91 1.09e-05 TGTGGGCCCT GGTCACAC TGCCCGCTAG chr3R:18663643-18663763 96 1.09e-05 CGCCTGACCT GGTCACAC CGATTGCCAC chr3R:27559135-27559255 66 1.09e-05 CTGGCAGTGC GGTCACAC CAATTCGATG chr3R:26945432-26945552 1 1.09e-05 . GGTCACAC TTTATAAATA chr3R:16050751-16050871 61 1.09e-05 TGTGAGTAGC GGTCACAC TGGCGCAACG chrX:10325955-10326075 27 1.09e-05 TGTGGCCAGT GGTCACAC TAAAAGGCAG chr2L:13829757-13829877 107 1.09e-05 CCATTTCAAT GGTCACAC TAAACA chr2L:7885397-7885517 59 1.09e-05 CAGCACAGAT GGTCACAC ATAATCGCGG chr3R:24032061-24032181 68 1.09e-05 ATGTGAACAC GGTCACAC TGCGAGCCTT chr3L:16090455-16090575 25 1.09e-05 CGCCCGGTCT GGTCACAC TGACGGTTCG chr3R:29223426-29223546 32 1.09e-05 GCAGTGCTAG GGTCACAC TGCATTTTCG chr3L:292307-292427 93 1.92e-05 ACGCGCACGC GGCCACAC TAACAGCAAA chr3R:30052572-30052692 77 1.92e-05 CTCTTGAGCT GGCCACAC TGTCGATCGA chr2L:6854116-6854236 25 1.92e-05 AGAGATCTTT GGCCACAC CAACAAAACA chr3R:31610964-31611084 97 3.01e-05 ATCGCGAAAC GGTCACTC TGCACAGCCG chr3R:24650042-24650162 100 3.01e-05 GCCCGCCAAC GGTCACTC TGGCCAGCCA chr2L:9890783-9890903 72 3.01e-05 TCAATGGAAT GGTCACTC TGTTTTTGCA chrX:2073438-2073558 102 3.83e-05 CGCGAGCGTC GGGCACAC TGCCCGGATC chr2R:11679350-11679470 54 4.91e-05 TTATATGCAC GGACACAC CTATCGACGA chr3L:14028596-14028716 94 6.02e-05 acgcacaccc gctcacac aaacacacac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24763067-24763187 1.1e-05 93_[+3]_19 chr2R:23702408-23702528 1.1e-05 87_[+3]_25 chr2R:9842539-9842659 1.1e-05 27_[+3]_85 chr2R:21011873-21011993 1.1e-05 102_[+3]_10 chr2L:156097-156217 1.1e-05 68_[+3]_44 chr2R:9103168-9103288 1.1e-05 74_[+3]_38 chr2R:7806380-7806500 1.1e-05 90_[+3]_22 chr3R:18663643-18663763 1.1e-05 95_[+3]_17 chr3R:27559135-27559255 1.1e-05 65_[+3]_47 chr3R:26945432-26945552 1.1e-05 [+3]_112 chr3R:16050751-16050871 1.1e-05 60_[+3]_52 chrX:10325955-10326075 1.1e-05 26_[+3]_86 chr2L:13829757-13829877 1.1e-05 106_[+3]_6 chr2L:7885397-7885517 1.1e-05 58_[+3]_54 chr3R:24032061-24032181 1.1e-05 67_[+3]_45 chr3L:16090455-16090575 1.1e-05 24_[+3]_88 chr3R:29223426-29223546 1.1e-05 31_[+3]_81 chr3L:292307-292427 1.9e-05 92_[+3]_20 chr3R:30052572-30052692 1.9e-05 76_[+3]_36 chr2L:6854116-6854236 1.9e-05 24_[+3]_88 chr3R:31610964-31611084 3e-05 96_[+3]_16 chr3R:24650042-24650162 3e-05 99_[+3]_13 chr2L:9890783-9890903 3e-05 71_[+3]_41 chrX:2073438-2073558 3.8e-05 101_[+3]_11 chr2R:11679350-11679470 4.9e-05 53_[+3]_59 chr3L:14028596-14028716 6e-05 93_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=26 chr2R:24763067-24763187 ( 94) GGTCACAC 1 chr2R:23702408-23702528 ( 88) GGTCACAC 1 chr2R:9842539-9842659 ( 28) GGTCACAC 1 chr2R:21011873-21011993 ( 103) GGTCACAC 1 chr2L:156097-156217 ( 69) GGTCACAC 1 chr2R:9103168-9103288 ( 75) GGTCACAC 1 chr2R:7806380-7806500 ( 91) GGTCACAC 1 chr3R:18663643-18663763 ( 96) GGTCACAC 1 chr3R:27559135-27559255 ( 66) GGTCACAC 1 chr3R:26945432-26945552 ( 1) GGTCACAC 1 chr3R:16050751-16050871 ( 61) GGTCACAC 1 chrX:10325955-10326075 ( 27) GGTCACAC 1 chr2L:13829757-13829877 ( 107) GGTCACAC 1 chr2L:7885397-7885517 ( 59) GGTCACAC 1 chr3R:24032061-24032181 ( 68) GGTCACAC 1 chr3L:16090455-16090575 ( 25) GGTCACAC 1 chr3R:29223426-29223546 ( 32) GGTCACAC 1 chr3L:292307-292427 ( 93) GGCCACAC 1 chr3R:30052572-30052692 ( 77) GGCCACAC 1 chr2L:6854116-6854236 ( 25) GGCCACAC 1 chr3R:31610964-31611084 ( 97) GGTCACTC 1 chr3R:24650042-24650162 ( 100) GGTCACTC 1 chr2L:9890783-9890903 ( 72) GGTCACTC 1 chrX:2073438-2073558 ( 102) GGGCACAC 1 chr2R:11679350-11679470 ( 54) GGACACAC 1 chr3L:14028596-14028716 ( 94) GCTCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 2.4e-013 -1134 -1134 222 -1134 -1134 -250 217 -1134 -288 -91 -247 151 -1134 220 -1134 -1134 181 -1134 -1134 -1134 -1134 220 -1134 -1134 164 -1134 -1134 -130 -1134 220 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.4e-013 0.000000 0.000000 1.000000 0.000000 0.000000 0.038462 0.961538 0.000000 0.038462 0.115385 0.038462 0.807692 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.884615 0.000000 0.000000 0.115385 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 19.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCDGCAC MEME-4 width = 8 sites = 31 llr = 274 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4::a1 pos.-specific C 3:a::a:5 probability G 7a:2a::2 matrix T :::4:::2 bits 2.2 ** ** 2.0 ** ** 1.8 ** *** 1.6 ** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.7 bits) 0.9 *** *** 0.7 *** *** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GGCTGCAC consensus C A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1710399-1710519 71 8.19e-06 GCAACAGTGT GGCTGCAC GCCATCAGCT chrX:13736220-13736340 106 8.19e-06 AATAGTAGGT GGCTGCAC TCGCTAG chr2L:3058831-3058951 112 8.19e-06 AAGAAACTAC GGCTGCAC G chrX:9283024-9283144 78 8.19e-06 TAAAACGGGT GGCTGCAC TCACATAGGG chrX:13822124-13822244 58 1.64e-05 aacacacaca ggcagcac actcacacac chr2R:17412692-17412812 43 1.64e-05 CGAATAATGT GGCAGCAC TAGTTATCGA chr2R:13450478-13450598 39 1.64e-05 CATGCGCACT GGCAGCAC TGCCGTACAA chr3L:8763254-8763374 52 2.25e-05 CGCTTTGATC GGCGGCAC ATAATACAAC chr2L:3373457-3373577 65 2.25e-05 CCAAAAATTT GGCGGCAC TTTCAAATTC chrX:6091151-6091271 59 2.25e-05 CGATTAAGGC GGCGGCAC TCCCCCTCTT chr3R:24630150-24630270 105 2.25e-05 GTCCGTATCT GGCGGCAC CGCTCACA chr3L:8315283-8315403 67 3.09e-05 TAATCGCGCC CGCTGCAC AATTAATTGA chr2L:17384630-17384750 61 3.09e-05 TCGATTGGCG CGCTGCAC TGGAGCTGTG chrX:13370956-13371076 25 3.89e-05 TGGCTGCGAG GGCTGCAG ACGTGATATT chr2R:21011873-21011993 50 5.79e-05 CGCAACTATC GGCTGCAT CGTGATTTGT chr3R:29806972-29807092 43 5.79e-05 AAGTCTTGTG CGCAGCAC TAGTGTCGTT chr2R:7939106-7939226 22 5.79e-05 GGAATATTAG GGCTGCAT GCCTGGCAGG chrX:10472713-10472833 22 5.79e-05 GCCAGTGCCT CGCAGCAC ACGCAACTGA chr3R:26912857-26912977 47 5.79e-05 GTTGGTACAG GGCTGCAT AGTCACTGGC chr2R:17698291-17698411 76 7.23e-05 AGTGTGGCCA GGCAGCAG CTGTTTAAAT chr3L:1496468-1496588 44 7.23e-05 TACCGTTACA CGCGGCAC TCGAGCGCCA chrX:15986835-15986955 60 8.90e-05 CATCACTTGC GGCAGCAT GAACTTTATG chr3L:16714212-16714332 69 8.90e-05 CACCTTTGGC GGCGGCAG CGGCGCGGCA chrX:9319236-9319356 108 8.90e-05 CGCACCAATG GGCAGCAT TGTTA chr3R:8801419-8801539 99 1.08e-04 CGTTCACACT GGCTGCAA GCATCGATTA chr2R:16856192-16856312 20 1.08e-04 AGTGCTTGTC GGCTGCAA TACTATCGAT chr3R:14879353-14879473 65 1.08e-04 GGCCAACGAG GGCTGCAA CAGCTGAAGT chr3L:3411742-3411862 38 1.18e-04 GCGTGACTTT GGCAGCAA ACTTTTCTCA chr2R:11279699-11279819 13 1.54e-04 TGCAGTGACA CGCAGCAG GAAAAATGTT chr2L:14355087-14355207 26 1.71e-04 AAGCACCTAT CGCGGCAG TGTGACCCTT chr2R:8928065-8928185 27 1.71e-04 GGCAGCTCTA CGCAGCAT TGCAGTGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1710399-1710519 8.2e-06 70_[+4]_42 chrX:13736220-13736340 8.2e-06 105_[+4]_7 chr2L:3058831-3058951 8.2e-06 111_[+4]_1 chrX:9283024-9283144 8.2e-06 77_[+4]_35 chrX:13822124-13822244 1.6e-05 57_[+4]_55 chr2R:17412692-17412812 1.6e-05 42_[+4]_70 chr2R:13450478-13450598 1.6e-05 38_[+4]_74 chr3L:8763254-8763374 2.3e-05 51_[+4]_61 chr2L:3373457-3373577 2.3e-05 64_[+4]_48 chrX:6091151-6091271 2.3e-05 58_[+4]_54 chr3R:24630150-24630270 2.3e-05 104_[+4]_8 chr3L:8315283-8315403 3.1e-05 66_[+4]_46 chr2L:17384630-17384750 3.1e-05 60_[+4]_52 chrX:13370956-13371076 3.9e-05 24_[+4]_88 chr2R:21011873-21011993 5.8e-05 49_[+4]_63 chr3R:29806972-29807092 5.8e-05 42_[+4]_70 chr2R:7939106-7939226 5.8e-05 21_[+4]_91 chrX:10472713-10472833 5.8e-05 21_[+4]_91 chr3R:26912857-26912977 5.8e-05 46_[+4]_66 chr2R:17698291-17698411 7.2e-05 75_[+4]_37 chr3L:1496468-1496588 7.2e-05 43_[+4]_69 chrX:15986835-15986955 8.9e-05 59_[+4]_53 chr3L:16714212-16714332 8.9e-05 68_[+4]_44 chrX:9319236-9319356 8.9e-05 107_[+4]_5 chr3R:8801419-8801539 0.00011 98_[+4]_14 chr2R:16856192-16856312 0.00011 19_[+4]_93 chr3R:14879353-14879473 0.00011 64_[+4]_48 chr3L:3411742-3411862 0.00012 37_[+4]_75 chr2R:11279699-11279819 0.00015 12_[+4]_100 chr2L:14355087-14355207 0.00017 25_[+4]_87 chr2R:8928065-8928185 0.00017 26_[+4]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCDGCAC width=8 seqs=31 chr2L:1710399-1710519 ( 71) GGCTGCAC 1 chrX:13736220-13736340 ( 106) GGCTGCAC 1 chr2L:3058831-3058951 ( 112) GGCTGCAC 1 chrX:9283024-9283144 ( 78) GGCTGCAC 1 chrX:13822124-13822244 ( 58) GGCAGCAC 1 chr2R:17412692-17412812 ( 43) GGCAGCAC 1 chr2R:13450478-13450598 ( 39) GGCAGCAC 1 chr3L:8763254-8763374 ( 52) GGCGGCAC 1 chr2L:3373457-3373577 ( 65) GGCGGCAC 1 chrX:6091151-6091271 ( 59) GGCGGCAC 1 chr3R:24630150-24630270 ( 105) GGCGGCAC 1 chr3L:8315283-8315403 ( 67) CGCTGCAC 1 chr2L:17384630-17384750 ( 61) CGCTGCAC 1 chrX:13370956-13371076 ( 25) GGCTGCAG 1 chr2R:21011873-21011993 ( 50) GGCTGCAT 1 chr3R:29806972-29807092 ( 43) CGCAGCAC 1 chr2R:7939106-7939226 ( 22) GGCTGCAT 1 chrX:10472713-10472833 ( 22) CGCAGCAC 1 chr3R:26912857-26912977 ( 47) GGCTGCAT 1 chr2R:17698291-17698411 ( 76) GGCAGCAG 1 chr3L:1496468-1496588 ( 44) CGCGGCAC 1 chrX:15986835-15986955 ( 60) GGCAGCAT 1 chr3L:16714212-16714332 ( 69) GGCGGCAG 1 chrX:9319236-9319356 ( 108) GGCAGCAT 1 chr3R:8801419-8801539 ( 99) GGCTGCAA 1 chr2R:16856192-16856312 ( 20) GGCTGCAA 1 chr3R:14879353-14879473 ( 65) GGCTGCAA 1 chr3L:3411742-3411862 ( 38) GGCAGCAA 1 chr2R:11279699-11279819 ( 13) CGCAGCAG 1 chr2L:14355087-14355207 ( 26) CGCGGCAG 1 chr2R:8928065-8928185 ( 27) CGCAGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 2.2e+000 -1160 25 179 -1160 -1160 -1160 222 -1160 -1160 220 -1160 -1160 32 -1160 8 56 -1160 -1160 222 -1160 -1160 220 -1160 -1160 181 -1160 -1160 -1160 -114 125 -41 -55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 2.2e+000 0.000000 0.258065 0.741935 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.354839 0.000000 0.225806 0.419355 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.129032 0.516129 0.161290 0.193548 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 regular expression -------------------------------------------------------------------------------- [GC]GC[TAG]GCAC -------------------------------------------------------------------------------- Time 25.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-5 width = 8 sites = 42 llr = 346 E-value = 9.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::1 probability G :::312:: matrix T aaa698a9 bits 2.2 2.0 1.8 ** * 1.6 *** * * Relative 1.3 *** * ** Entropy 1.1 *** **** (11.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23970048-23970168 62 4.23e-05 CAACGCAGTA TTTTTTTT TAGTACTTTT chr2L:21619331-21619451 14 4.23e-05 attttacaat tttttttt cattttattc chr3L:10866680-10866800 9 4.23e-05 AAGTATGA TTTTTTTT GTCGAAGGAT chr3L:8763254-8763374 101 4.23e-05 ATTCTCTTAT TTTTTTTT TGCAAGCCTT chr2L:9938124-9938244 46 4.23e-05 AATTCTGGTA TTTTTTTT GATACGGTAT chr3R:13645198-13645318 18 4.23e-05 TTTTCCAACG TTTTTTTT CGCCACATTT chr3R:13676555-13676675 49 4.23e-05 GTTAATGTTT TTTTTTTT CAGCAGCGAC chrX:18499862-18499982 101 4.23e-05 TGAAAATGGA TTTTTTTT ATGTATGTGC chrX:17107612-17107732 87 4.23e-05 TTTTGTTTTG TTTTTTTT TGCGTTCACT chr3L:8411693-8411813 105 4.23e-05 CGTTATAATT TTTTTTTT CGTGCAAA chr3R:21214792-21214912 77 4.23e-05 taagctttat tttttttt agtttttgtg chrX:9149106-9149226 60 4.23e-05 AAGTTACAGA TTTTTTTT ATTAGTAGCA chr3R:24233944-24234064 81 4.23e-05 TGTACATAAT TTTTTTTT CGGCTGCTTT chr2R:7387224-7387344 92 4.23e-05 TGAACTGCTG TTTTTTTT TAAATGCCAA chr3L:9629994-9630114 3 4.23e-05 AT TTTTTTTT CTACTAATGT chr3L:5152596-5152716 45 7.42e-05 GATAGCGGGC TTTGTTTT GACAGCTGCA chr3L:11258519-11258639 14 7.42e-05 TGCTCCTGGC TTTGTTTT AAATTTCTCC chr2R:11679350-11679470 102 7.42e-05 AGGCGGTTAA TTTGTTTT GTGATTTGGT chr2R:18660618-18660738 99 7.42e-05 TTCCAAATGC TTTGTTTT GGCGCCTGTT chr3R:19094155-19094275 88 7.42e-05 GACGTCCGAC TTTGTTTT CCGACTCGAT chr3L:15837383-15837503 20 7.42e-05 TTTGATGGGT TTTGTTTT CTGCCAGGAT chr3R:9637562-9637682 32 7.42e-05 TTCCGCCATA TTTGTTTT TCTAGTGGTG chr3R:26056490-26056610 107 7.42e-05 CACTGTTTCA TTTGTTTT TACTCC chr2R:15135478-15135598 96 1.06e-04 CCCACTCTCG TTTTTGTT GTTGTTGGTT chrX:16610643-16610763 112 1.06e-04 GTTTATTATT TTTTTGTT A chr3L:18109619-18109739 82 1.06e-04 CAAAACTGGC TTTTTGTT GCAGTAAATC chr2L:14359045-14359165 113 1.06e-04 ATCAGTCCAA TTTTTGTT chr3L:15514596-15514716 80 1.06e-04 AGCGAAGCAT TTTTTGTT TACCGCTGAT chr3R:14879353-14879473 90 1.06e-04 AGTCAGCTGC TTTTTGTT TACATCACGA chrX:13736220-13736340 40 1.30e-04 GGTACGCAAA TTTGTGTT TAATCGATAC chrX:9283024-9283144 60 1.30e-04 TGCGAAATTG TTTGTGTT TAAAACGGGT chr3R:10331202-10331322 47 1.63e-04 TCTGTAGGGG TTTTTTTC GCAATTCAAT chr3R:14316176-14316296 60 1.63e-04 ATTTTCCCTC TTTTTTTC CCTTCTTTTG chr3R:29806972-29807092 109 2.27e-04 AGCGTTTTGC TTTCTTTT TGCG chr2R:16202889-16203009 93 2.27e-04 GATATTTCAA TTTCTTTT AATTTTCACG chrX:9082808-9082928 24 2.27e-04 AATACAAATA TTTTGTTT AAACATTTGA chr3R:29223426-29223546 98 2.27e-04 TAGCATTCTG TTTTGTTT ACGAATTATT chr2L:8072797-8072917 2 2.27e-04 A TTTTGTTT ACAAGTCTTG chr3L:20276715-20276835 82 2.51e-04 AAAAAATGTA TTTGTTTC GTCACTAATG chrX:2073438-2073558 76 2.51e-04 GTGGCAGGTG TTTGTTTC CAAGCAAACG chr3R:18928370-18928490 40 3.07e-04 CGtgttgttg ttgttttt gtggtgccag chr3R:26945432-26945552 54 3.31e-04 ACCCTAAACA TTGGTTTT CAAGAATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23970048-23970168 4.2e-05 61_[+5]_51 chr2L:21619331-21619451 4.2e-05 13_[+5]_99 chr3L:10866680-10866800 4.2e-05 8_[+5]_104 chr3L:8763254-8763374 4.2e-05 100_[+5]_12 chr2L:9938124-9938244 4.2e-05 45_[+5]_67 chr3R:13645198-13645318 4.2e-05 17_[+5]_95 chr3R:13676555-13676675 4.2e-05 48_[+5]_64 chrX:18499862-18499982 4.2e-05 100_[+5]_12 chrX:17107612-17107732 4.2e-05 86_[+5]_26 chr3L:8411693-8411813 4.2e-05 104_[+5]_8 chr3R:21214792-21214912 4.2e-05 76_[+5]_36 chrX:9149106-9149226 4.2e-05 59_[+5]_53 chr3R:24233944-24234064 4.2e-05 80_[+5]_32 chr2R:7387224-7387344 4.2e-05 91_[+5]_21 chr3L:9629994-9630114 4.2e-05 2_[+5]_110 chr3L:5152596-5152716 7.4e-05 44_[+5]_68 chr3L:11258519-11258639 7.4e-05 13_[+5]_99 chr2R:11679350-11679470 7.4e-05 101_[+5]_11 chr2R:18660618-18660738 7.4e-05 98_[+5]_14 chr3R:19094155-19094275 7.4e-05 87_[+5]_25 chr3L:15837383-15837503 7.4e-05 19_[+5]_93 chr3R:9637562-9637682 7.4e-05 31_[+5]_81 chr3R:26056490-26056610 7.4e-05 106_[+5]_6 chr2R:15135478-15135598 0.00011 95_[+5]_17 chrX:16610643-16610763 0.00011 111_[+5]_1 chr3L:18109619-18109739 0.00011 81_[+5]_31 chr2L:14359045-14359165 0.00011 112_[+5] chr3L:15514596-15514716 0.00011 79_[+5]_33 chr3R:14879353-14879473 0.00011 89_[+5]_23 chrX:13736220-13736340 0.00013 39_[+5]_73 chrX:9283024-9283144 0.00013 59_[+5]_53 chr3R:10331202-10331322 0.00016 46_[+5]_66 chr3R:14316176-14316296 0.00016 59_[+5]_53 chr3R:29806972-29807092 0.00023 108_[+5]_4 chr2R:16202889-16203009 0.00023 92_[+5]_20 chrX:9082808-9082928 0.00023 23_[+5]_89 chr3R:29223426-29223546 0.00023 97_[+5]_15 chr2L:8072797-8072917 0.00023 1_[+5]_111 chr3L:20276715-20276835 0.00025 81_[+5]_31 chrX:2073438-2073558 0.00025 75_[+5]_37 chr3R:18928370-18928490 0.00031 39_[+5]_73 chr3R:26945432-26945552 0.00033 53_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=42 chr2R:23970048-23970168 ( 62) TTTTTTTT 1 chr2L:21619331-21619451 ( 14) TTTTTTTT 1 chr3L:10866680-10866800 ( 9) TTTTTTTT 1 chr3L:8763254-8763374 ( 101) TTTTTTTT 1 chr2L:9938124-9938244 ( 46) TTTTTTTT 1 chr3R:13645198-13645318 ( 18) TTTTTTTT 1 chr3R:13676555-13676675 ( 49) TTTTTTTT 1 chrX:18499862-18499982 ( 101) TTTTTTTT 1 chrX:17107612-17107732 ( 87) TTTTTTTT 1 chr3L:8411693-8411813 ( 105) TTTTTTTT 1 chr3R:21214792-21214912 ( 77) TTTTTTTT 1 chrX:9149106-9149226 ( 60) TTTTTTTT 1 chr3R:24233944-24234064 ( 81) TTTTTTTT 1 chr2R:7387224-7387344 ( 92) TTTTTTTT 1 chr3L:9629994-9630114 ( 3) TTTTTTTT 1 chr3L:5152596-5152716 ( 45) TTTGTTTT 1 chr3L:11258519-11258639 ( 14) TTTGTTTT 1 chr2R:11679350-11679470 ( 102) TTTGTTTT 1 chr2R:18660618-18660738 ( 99) TTTGTTTT 1 chr3R:19094155-19094275 ( 88) TTTGTTTT 1 chr3L:15837383-15837503 ( 20) TTTGTTTT 1 chr3R:9637562-9637682 ( 32) TTTGTTTT 1 chr3R:26056490-26056610 ( 107) TTTGTTTT 1 chr2R:15135478-15135598 ( 96) TTTTTGTT 1 chrX:16610643-16610763 ( 112) TTTTTGTT 1 chr3L:18109619-18109739 ( 82) TTTTTGTT 1 chr2L:14359045-14359165 ( 113) TTTTTGTT 1 chr3L:15514596-15514716 ( 80) TTTTTGTT 1 chr3R:14879353-14879473 ( 90) TTTTTGTT 1 chrX:13736220-13736340 ( 40) TTTGTGTT 1 chrX:9283024-9283144 ( 60) TTTGTGTT 1 chr3R:10331202-10331322 ( 47) TTTTTTTC 1 chr3R:14316176-14316296 ( 60) TTTTTTTC 1 chr3R:29806972-29807092 ( 109) TTTCTTTT 1 chr2R:16202889-16203009 ( 93) TTTCTTTT 1 chrX:9082808-9082928 ( 24) TTTTGTTT 1 chr3R:29223426-29223546 ( 98) TTTTGTTT 1 chr2L:8072797-8072917 ( 2) TTTTGTTT 1 chr3L:20276715-20276835 ( 82) TTTGTTTC 1 chrX:2073438-2073558 ( 76) TTTGTTTC 1 chr3R:18928370-18928490 ( 40) TTGTTTTT 1 chr3R:26945432-26945552 ( 54) TTGGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 9.1e+001 -1204 -1204 -1204 182 -1204 -1204 -1204 182 -1204 -1204 -217 174 -1204 -219 53 118 -1204 -1204 -158 171 -1204 -1204 -17 151 -1204 -1204 -1204 182 -1204 -119 -1204 167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 9.1e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.047619 0.952381 0.000000 0.047619 0.309524 0.642857 0.000000 0.000000 0.071429 0.928571 0.000000 0.000000 0.190476 0.809524 0.000000 0.000000 0.000000 1.000000 0.000000 0.095238 0.000000 0.904762 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 regular expression -------------------------------------------------------------------------------- TTT[TG]TTTT -------------------------------------------------------------------------------- Time 32.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8072797-8072917 6.48e-03 36_[+2(1.07e-05)]_76 chr3L:9629994-9630114 6.51e-03 1_[+5(4.23e-05)]_111 chr2L:21629364-21629484 1.00e-02 120 chr2R:7932344-7932464 2.67e-02 120 chr2R:6811390-6811510 3.55e-01 120 chr3L:21634425-21634545 4.39e-01 120 chrX:11817715-11817835 4.94e-02 120 chr3L:8535122-8535242 3.42e-02 120 chr3L:3219028-3219148 7.79e-01 120 chr2R:7387224-7387344 7.88e-03 91_[+5(4.23e-05)]_21 chr3R:24233944-24234064 1.87e-02 79_[+5(4.23e-05)]_33 chr2R:12519056-12519176 5.34e-02 120 chr3R:10001300-10001420 2.14e-02 64_[+2(1.87e-05)]_48 chr2R:16850328-16850448 2.99e-02 36_[+1(2.45e-05)]_59_[+1(8.62e-05)]_\ 9 chr3R:18255418-18255538 7.15e-02 78_[+1(2.45e-05)]_34 chr2L:9890783-9890903 4.55e-03 71_[+3(3.01e-05)]_41 chr3R:24650042-24650162 2.04e-02 99_[+3(3.01e-05)]_13 chr3R:14879353-14879473 1.88e-02 120 chrX:12611755-12611875 7.26e-01 120 chr2R:17430952-17431072 4.05e-02 14_[+1(6.74e-05)]_44_[+1(6.74e-05)]_\ 46 chr2R:12569791-12569911 8.40e-01 120 chr2R:10122543-10122663 4.16e-02 25_[+1(4.29e-05)]_87 chrX:9149106-9149226 6.44e-02 59_[+5(4.23e-05)]_53 chrX:10478764-10478884 3.64e-02 120 chr2R:19669020-19669140 2.95e-01 120 chr3R:25983418-25983538 1.64e-01 63_[+2(8.95e-05)]_49 chr3R:26056490-26056610 5.94e-02 106_[+5(7.42e-05)]_6 chr3R:25033429-25033549 4.21e-02 22_[+2(1.07e-05)]_18_[+2(1.07e-05)]_\ 64 chr3L:5365949-5366069 4.35e-01 120 chr2R:16011553-16011673 5.48e-01 120 chr3L:10631035-10631155 1.03e-01 120 chr2L:6914068-6914188 1.71e-01 28_[+2(6.84e-05)]_84 chr2R:8922661-8922781 6.14e-01 120 chr3L:19618478-19618598 5.34e-02 120 chr3R:21660973-21661093 4.41e-02 39_[+2(3.29e-05)]_73 chrX:13285468-13285588 3.71e-01 120 chr3R:18412356-18412476 8.05e-01 120 chrX:9283024-9283144 3.47e-03 77_[+4(8.19e-06)]_35 chr3R:26912857-26912977 8.97e-03 46_[+4(5.79e-05)]_66 chr3R:29724898-29725018 7.66e-02 76_[+1(6.74e-05)]_36 chr3L:20226359-20226479 2.26e-01 120 chr3L:3374128-3374248 4.42e-02 93_[+1(2.45e-05)]_19 chr2R:10429614-10429734 1.19e-03 73_[+1(2.45e-05)]_39 chr3L:1802965-1803085 5.94e-03 95_[+2(1.87e-05)]_17 chr3R:29223426-29223546 1.93e-04 31_[+3(1.09e-05)]_42_[+1(8.62e-05)]_\ 31 chr3L:14038426-14038546 5.94e-01 120 chr2R:10645603-10645723 4.27e-01 120 chr2L:5724848-5724968 6.18e-03 74_[+3(8.52e-05)]_38 chr3L:15514596-15514716 1.48e-01 120 chr3R:24226902-24227022 1.97e-01 120 chr3R:18928370-18928490 8.48e-02 120 chr3L:8405253-8405373 1.01e-01 35_[+1(4.29e-05)]_77 chr3L:10679949-10680069 3.78e-01 120 chrX:19704185-19704305 4.15e-01 120 chr2L:19571688-19571808 7.77e-01 120 chr3L:17843078-17843198 4.67e-01 120 chr3L:16090455-16090575 4.39e-02 24_[+3(1.09e-05)]_88 chr3L:2599523-2599643 5.54e-02 120 chr3R:15225439-15225559 1.78e-01 24_[+1(4.29e-05)]_88 chr2R:24881610-24881730 1.90e-01 120 chr3R:23941776-23941896 2.23e-02 40_[+5(4.23e-05)]_21_[+5(4.23e-05)]_\ 43 chrX:9319236-9319356 7.48e-02 107_[+4(8.90e-05)]_5 chrX:13370956-13371076 2.14e-02 24_[+4(3.89e-05)]_88 chr2R:24535371-24535491 5.61e-02 72_[+1(6.74e-05)]_40 chr3R:26952383-26952503 2.08e-01 97_[+2(8.95e-05)]_15 chr3L:199208-199328 6.09e-01 120 chr2L:3058831-3058951 1.85e-02 111_[+4(8.19e-06)]_1 chr3L:17042662-17042782 2.52e-01 120 chr2L:7412329-7412449 4.73e-02 98_[+3(6.85e-05)]_14 chrX:19348900-19349020 9.89e-01 120 chr3R:24032061-24032181 3.77e-02 67_[+3(1.09e-05)]_45 chr2L:11130658-11130778 4.41e-02 54_[+2(1.07e-05)]_58 chr3R:10854687-10854807 1.80e-01 120 chr3L:9367531-9367651 6.24e-01 120 chrX:16781173-16781293 4.05e-01 120 chr2L:182892-183012 6.46e-01 120 chr3L:21343654-21343774 4.82e-02 56_[+2(9.77e-05)]_56 chr2L:11280246-11280366 6.71e-01 120 chr3L:1496468-1496588 1.71e-02 43_[+4(7.23e-05)]_69 chrX:9082808-9082928 4.74e-01 120 chr3R:21214792-21214912 9.58e-02 75_[+5(4.23e-05)]_37 chr3R:11869302-11869422 5.18e-01 120 chr3R:9637562-9637682 4.95e-03 31_[+5(7.42e-05)]_29_[+1(2.45e-05)]_\ 44 chr2L:2214115-2214235 2.45e-01 95_[+1(2.45e-05)]_17 chr2R:17062638-17062758 2.93e-02 71_[+1(4.29e-05)]_41 chrX:13736220-13736340 7.76e-05 57_[+1(4.29e-05)]_40_[+4(8.19e-06)]_\ 7 chr3L:6752334-6752454 3.60e-02 106_[+1(4.29e-05)]_6 chr3L:8411693-8411813 9.61e-02 102_[+5(4.23e-05)]_10 chrX:17107612-17107732 9.42e-02 77_[+5(7.42e-05)]_1_[+5(4.23e-05)]_\ 26 chr2R:16856192-16856312 2.98e-03 30_[+1(6.74e-05)]_82 chr3L:9838662-9838782 2.98e-01 120 chr2R:18167149-18167269 1.99e-01 120 chr3R:20253952-20254072 3.05e-01 120 chrX:656031-656151 1.50e-01 19_[+1(2.45e-05)]_93 chr2L:7885397-7885517 4.55e-04 37_[+1(4.29e-05)]_13_[+3(1.09e-05)]_\ 54 chr2L:1655833-1655953 7.56e-01 120 chr2R:13450478-13450598 2.46e-03 38_[+4(1.64e-05)]_74 chr2R:17766711-17766831 4.30e-01 120 chr2L:1732264-1732384 3.85e-01 120 chrX:2073438-2073558 7.64e-03 101_[+3(3.83e-05)]_11 chrX:17878957-17879077 4.95e-01 120 chr2R:16322117-16322237 2.69e-02 3_[+2(8.95e-05)]_109 chr3R:31610964-31611084 3.19e-02 96_[+3(3.01e-05)]_16 chrX:10472713-10472833 1.04e-01 21_[+4(5.79e-05)]_91 chr2L:13829757-13829877 4.00e-04 9_[+1(2.45e-05)]_89_[+3(1.09e-05)]_\ 6 chr3L:15163520-15163640 6.25e-02 120 chr2R:7939106-7939226 6.24e-03 21_[+4(5.79e-05)]_91 chr3L:21216832-21216952 1.71e-02 16_[+1(8.62e-05)]_96 chr3L:12116011-12116131 1.23e-01 20_[+1(2.45e-05)]_92 chr3L:22871050-22871170 2.29e-02 120 chr3R:24630150-24630270 1.45e-02 104_[+4(2.25e-05)]_8 chrX:4117502-4117622 4.61e-02 1_[+2(4.35e-05)]_111 chrX:6091151-6091271 1.41e-02 58_[+4(2.25e-05)]_54 chr3L:9854789-9854909 1.83e-01 120 chr2R:9116286-9116406 4.92e-01 120 chr3R:14316176-14316296 1.33e-01 120 chr2R:24779842-24779962 5.55e-01 120 chr3L:15837383-15837503 8.16e-02 19_[+5(7.42e-05)]_93 chr3L:15563624-15563744 4.60e-01 120 chr3R:28811127-28811247 2.27e-01 120 chrX:10325955-10326075 6.06e-04 15_[+2(6.84e-05)]_3_[+3(1.09e-05)]_\ 86 chr3L:13502592-13502712 7.63e-02 120 chr3R:9019948-9020068 2.58e-03 56_[+2(1.07e-05)]_56 chrX:18499862-18499982 4.04e-03 100_[+5(4.23e-05)]_12 chr2L:19792045-19792165 2.37e-02 41_[+1(2.45e-05)]_71 chr2L:6852188-6852308 6.51e-01 120 chr3R:16050751-16050871 4.10e-02 60_[+3(1.09e-05)]_52 chr2R:6636412-6636532 1.59e-01 76_[+1(8.62e-05)]_5_[+1(2.45e-05)]_\ 23 chr3R:11679682-11679802 4.46e-01 120 chr2L:13296308-13296428 7.09e-01 120 chr2R:18172355-18172475 8.05e-01 120 chrX:8606266-8606386 1.79e-02 120 chr3R:19094155-19094275 2.09e-03 87_[+5(7.42e-05)]_12_[+2(8.95e-05)]_\ 5 chr3L:20432482-20432602 9.48e-01 120 chr3L:16714212-16714332 1.33e-01 68_[+4(8.90e-05)]_44 chrX:6820863-6820983 2.16e-03 21_[+2(1.07e-05)]_91 chr2R:15934729-15934849 1.50e-01 120 chr3L:3411742-3411862 1.77e-01 120 chr2L:155222-155342 8.42e-01 120 chr3R:23931474-23931594 1.00e+00 120 chr2L:3862631-3862751 6.14e-01 120 chr2R:17698291-17698411 3.66e-03 66_[+2(1.87e-05)]_1_[+4(7.23e-05)]_\ 37 chrX:11325254-11325374 6.72e-02 89_[+1(2.45e-05)]_23 chr3R:6383027-6383147 7.97e-01 120 chr2L:3466097-3466217 2.23e-02 32_[+2(1.07e-05)]_80 chr3L:14002065-14002185 1.31e-02 67_[+2(1.07e-05)]_45 chr2L:17384630-17384750 1.23e-03 48_[+1(6.74e-05)]_4_[+4(3.09e-05)]_\ 52 chr3L:4108433-4108553 8.95e-01 120 chr2R:24571631-24571751 3.98e-01 120 chr3L:7125526-7125646 1.68e-03 46_[+1(2.45e-05)]_45_[+2(1.07e-05)]_\ 13 chr3L:18901505-18901625 2.78e-02 120 chr3R:10331202-10331322 1.39e-01 120 chrX:7710916-7711036 3.15e-01 120 chr2R:23865310-23865430 3.12e-03 30_[+2(1.87e-05)]_42_[+1(2.45e-05)]_\ 32 chr3R:26945432-26945552 1.32e-02 [+3(1.09e-05)]_112 chr2R:16848217-16848337 2.06e-01 4_[+1(4.29e-05)]_108 chr3R:13676555-13676675 1.41e-01 45_[+5(4.23e-05)]_67 chr3R:27559135-27559255 2.50e-04 1_[+2(1.07e-05)]_56_[+3(1.09e-05)]_\ 47 chr2L:2767836-2767956 2.49e-01 34_[+1(6.74e-05)]_78 chrX:11709922-11710042 1.30e-02 21_[+1(4.29e-05)]_6_[+1(8.62e-05)]_\ 77 chr3R:11581543-11581663 1.83e-01 12_[+1(2.45e-05)]_100 chr3R:13645198-13645318 1.15e-01 17_[+5(4.23e-05)]_95 chr2L:6854116-6854236 5.04e-02 24_[+3(1.92e-05)]_88 chr2R:21160558-21160678 1.33e-01 32_[+1(4.29e-05)]_18_[+1(2.45e-05)]_\ 54 chr2R:16202889-16203009 4.46e-02 33_[+2(4.35e-05)]_79 chr3L:8315283-8315403 3.09e-02 66_[+4(3.09e-05)]_46 chr2L:19735939-19736059 1.83e-02 37_[+1(2.45e-05)]_75 chr3L:9968392-9968512 4.15e-01 120 chr2L:14359045-14359165 2.08e-01 120 chr3R:22367197-22367317 9.34e-01 120 chr3R:24360107-24360227 9.80e-02 17_[+2(1.07e-05)]_95 chr2L:2217202-2217322 3.11e-02 17_[+1(2.45e-05)]_95 chr3R:8801419-8801539 1.90e-03 120 chr2L:7388201-7388321 2.62e-01 120 chr3L:18109619-18109739 3.76e-01 120 chr3R:18663643-18663763 1.85e-02 95_[+3(1.09e-05)]_17 chr3R:31745895-31746015 3.88e-01 120 chr2R:7806380-7806500 1.10e-02 90_[+3(1.09e-05)]_22 chrX:487652-487772 7.00e-01 120 chr2R:18660618-18660738 1.43e-03 47_[+1(2.45e-05)]_43_[+5(7.42e-05)]_\ 14 chr3R:11431683-11431803 8.30e-01 120 chr2L:6956901-6957021 2.87e-02 71_[+1(2.45e-05)]_41 chr2R:9103168-9103288 1.78e-03 44_[+2(5.77e-05)]_22_[+3(1.09e-05)]_\ 38 chr2L:11809109-11809229 1.30e-01 120 chr3R:29806972-29807092 2.59e-02 42_[+4(5.79e-05)]_70 chr3R:18226093-18226213 1.28e-03 48_[+1(2.45e-05)]_64 chr3L:17668994-17669114 7.46e-01 120 chr2L:12108872-12108992 1.01e-01 120 chr2L:10437472-10437592 4.43e-02 120 chr3R:30052572-30052692 4.24e-02 76_[+3(1.92e-05)]_36 chr2R:11679350-11679470 5.62e-06 9_[+2(4.35e-05)]_36_[+3(4.91e-05)]_\ 22_[+1(2.45e-05)]_10_[+5(7.42e-05)]_11 chr2R:17586064-17586184 7.19e-02 81_[+2(4.35e-05)]_31 chr3R:9874650-9874770 1.46e-01 120 chrX:1349306-1349426 1.82e-01 120 chr2L:156097-156217 6.73e-02 68_[+3(1.09e-05)]_44 chr2R:21128467-21128587 7.61e-03 27_[+1(2.45e-05)]_55_[+1(2.45e-05)]_\ 22 chr2L:5542255-5542375 2.99e-03 26_[+2(1.07e-05)]_50_[+1(2.45e-05)]_\ 28 chr2R:24086500-24086620 1.36e-01 64_[+1(2.45e-05)]_10_[+1(2.45e-05)]_\ 30 chr2R:21011873-21011993 7.34e-04 49_[+4(5.79e-05)]_45_[+3(1.09e-05)]_\ 10 chr2L:22168548-22168668 5.91e-01 120 chr2R:9842539-9842659 4.74e-02 27_[+3(1.09e-05)]_85 chrX:6663260-6663380 4.49e-01 120 chr2R:17514149-17514269 5.20e-02 59_[+1(6.74e-05)]_53 chr3L:16129554-16129674 4.50e-02 6_[+1(8.62e-05)]_106 chr2R:9692778-9692898 9.05e-01 120 chr2L:9938124-9938244 6.34e-03 45_[+5(4.23e-05)]_38_[+2(4.35e-05)]_\ 21 chr2R:17412692-17412812 1.24e-03 42_[+4(1.64e-05)]_4_[+1(2.45e-05)]_\ 58 chr2L:3373457-3373577 6.00e-04 11_[+2(1.87e-05)]_45_[+4(2.25e-05)]_\ 48 chrX:16610643-16610763 3.22e-02 25_[+1(8.62e-05)]_87 chr3L:16149800-16149920 2.23e-01 120 chr3L:3149338-3149458 2.76e-01 120 chr3R:23679969-23680089 2.48e-02 120 chr2R:23702408-23702528 2.37e-02 87_[+3(1.09e-05)]_25 chr3L:8763254-8763374 3.37e-03 51_[+4(2.25e-05)]_40_[+5(4.23e-05)]_\ 13 chr3L:20276715-20276835 2.01e-01 120 chr2L:1710399-1710519 3.35e-04 43_[+2(1.07e-05)]_19_[+4(8.19e-06)]_\ 42 chrX:18863798-18863918 1.06e-02 16_[+2(1.07e-05)]_96 chrX:13253146-13253266 3.36e-02 31_[+3(7.67e-05)]_81 chrX:6678162-6678282 7.64e-02 36_[+1(2.45e-05)]_76 chr2R:17536486-17536606 9.66e-01 120 chr2R:8928065-8928185 3.62e-01 120 chr2R:9847843-9847963 9.67e-01 120 chr3L:10866680-10866800 2.85e-02 8_[+5(4.23e-05)]_104 chrX:15986835-15986955 1.62e-01 59_[+4(8.90e-05)]_53 chr3L:17846402-17846522 2.32e-02 83_[+2(1.07e-05)]_29 chr2L:21619331-21619451 5.11e-03 12_[+5(4.23e-05)]_23_[+1(2.45e-05)]_\ 69 chr2R:7071088-7071208 3.21e-01 120 chr3R:5613069-5613189 1.32e-01 74_[+1(2.45e-05)]_38 chr2R:10899034-10899154 2.57e-01 120 chrX:4366340-4366460 2.76e-03 74_[+3(6.85e-05)]_38 chr2R:15135478-15135598 3.28e-03 120 chr3L:11258519-11258639 2.12e-01 13_[+5(7.42e-05)]_99 chr2R:23970048-23970168 1.02e-02 61_[+5(4.23e-05)]_51 chr2R:10813292-10813412 5.63e-01 120 chr2L:13882072-13882192 9.73e-01 120 chr3L:8675364-8675484 8.05e-01 120 chr3R:15243568-15243688 4.93e-01 120 chr2R:11279699-11279819 1.53e-03 120 chr3L:5152596-5152716 3.27e-03 44_[+5(7.42e-05)]_68 chrX:13822124-13822244 1.05e-02 57_[+4(1.64e-05)]_55 chr2L:21102574-21102694 7.57e-01 120 chr2R:10739809-10739929 8.68e-02 15_[+2(5.77e-05)]_97 chr3L:14028596-14028716 6.96e-02 93_[+3(6.02e-05)]_19 chr2R:24763067-24763187 7.88e-03 93_[+3(1.09e-05)]_19 chrX:12654499-12654619 6.78e-02 78_[+1(4.29e-05)]_34 chr3L:292307-292427 9.12e-03 92_[+3(1.92e-05)]_20 chr2L:14355087-14355207 1.48e-02 32_[+2(1.07e-05)]_20_[+2(1.07e-05)]_\ 52 chr3R:7092118-7092238 1.65e-01 120 chr2R:17683446-17683566 3.05e-01 120 chr3L:16574476-16574596 8.76e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************