******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9876.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:4052850-4052970 1.0000 120 chr2R:23997238-23997358 1.0000 120 chrX:9106559-9106679 1.0000 120 chrX:5177293-5177413 1.0000 120 chr2R:7245098-7245218 1.0000 120 chr3L:2414743-2414863 1.0000 120 chr3R:19491136-19491256 1.0000 120 chr2R:5128307-5128427 1.0000 120 chrX:17820348-17820468 1.0000 120 chr3L:20097385-20097505 1.0000 120 chr3L:16646980-16647100 1.0000 120 chr3R:6170908-6171028 1.0000 120 chr2R:20529477-20529597 1.0000 120 chr2R:14971311-14971431 1.0000 120 chr2R:10520659-10520779 1.0000 120 chr2L:7890859-7890979 1.0000 120 chrX:15910117-15910237 1.0000 120 chr3R:24031115-24031235 1.0000 120 chrX:5524704-5524824 1.0000 120 chrX:6110039-6110159 1.0000 120 chr3R:20310493-20310613 1.0000 120 chrX:16573830-16573950 1.0000 120 chr3L:14972723-14972843 1.0000 120 chr2L:18640462-18640582 1.0000 120 chrX:13805730-13805850 1.0000 120 chr2R:5693362-5693482 1.0000 120 chr2R:12171276-12171396 1.0000 120 chrX:17229949-17230069 1.0000 120 chrX:5671778-5671898 1.0000 120 chr3R:14723527-14723647 1.0000 120 chr3L:21446229-21446349 1.0000 120 chr2L:838121-838241 1.0000 120 chr3L:6059220-6059340 1.0000 120 chrX:15653665-15653785 1.0000 120 chr2L:9697686-9697806 1.0000 120 chr3R:16957895-16958015 1.0000 120 chr2R:11277404-11277524 1.0000 120 chr4:867069-867189 1.0000 120 chr3R:31636616-31636736 1.0000 120 chr2R:5122229-5122349 1.0000 120 chr3L:22277341-22277461 1.0000 120 chr3R:9356490-9356610 1.0000 120 chrX:15574509-15574629 1.0000 120 chr2R:25183065-25183185 1.0000 120 chr3R:20314260-20314380 1.0000 120 chr3L:27267094-27267214 1.0000 120 chr2R:7066676-7066796 1.0000 120 chr3L:8853021-8853141 1.0000 120 chr3L:4553540-4553660 1.0000 120 chrX:18366695-18366815 1.0000 120 chr3R:25329115-25329235 1.0000 120 chr2L:12242730-12242850 1.0000 120 chr2R:23180960-23181080 1.0000 120 chr2R:18356355-18356475 1.0000 120 chr3R:26535071-26535191 1.0000 120 chrX:10385786-10385906 1.0000 120 chr3R:17040571-17040691 1.0000 120 chrX:16840042-16840162 1.0000 120 chr3L:19140518-19140638 1.0000 120 chr2L:14013659-14013779 1.0000 120 chr4:1030967-1031087 1.0000 120 chr2R:4188162-4188282 1.0000 120 chr2R:8751619-8751739 1.0000 120 chr3L:18764177-18764297 1.0000 120 chr2L:20148564-20148684 1.0000 120 chr3R:27988956-27989076 1.0000 120 chr3L:15104179-15104299 1.0000 120 chr3R:26010912-26011032 1.0000 120 chr2L:6971896-6972016 1.0000 120 chr2R:24292842-24292962 1.0000 120 chr2L:3435165-3435285 1.0000 120 chr2L:5801088-5801208 1.0000 120 chr2R:7407774-7407894 1.0000 120 chr2L:16816067-16816187 1.0000 120 chr2R:23097110-23097230 1.0000 120 chr2L:13205401-13205521 1.0000 120 chr3R:26566878-26566998 1.0000 120 chr2L:15254410-15254530 1.0000 120 chr3R:29077733-29077853 1.0000 120 chr3L:6054845-6054965 1.0000 120 chr2L:1730599-1730719 1.0000 120 chr3R:4962760-4962880 1.0000 120 chr3R:9055222-9055342 1.0000 120 chr3L:8748986-8749106 1.0000 120 chr2L:12520401-12520521 1.0000 120 chr2R:17062634-17062754 1.0000 120 chr3L:13845400-13845520 1.0000 120 chr2L:14094762-14094882 1.0000 120 chrX:15319422-15319542 1.0000 120 chr3L:15234629-15234749 1.0000 120 chrX:17175890-17176010 1.0000 120 chr2L:2967229-2967349 1.0000 120 chr3L:199222-199342 1.0000 120 chr4:43763-43883 1.0000 120 chr3R:20948114-20948234 1.0000 120 chr3R:9677782-9677902 1.0000 120 chr2R:16551959-16552079 1.0000 120 chr2R:21535554-21535674 1.0000 120 chrX:15986844-15986964 1.0000 120 chr2R:23856851-23856971 1.0000 120 chr3L:13411173-13411293 1.0000 120 chr2R:21514432-21514552 1.0000 120 chr3R:16099099-16099219 1.0000 120 chr2L:14141323-14141443 1.0000 120 chr3L:6264593-6264713 1.0000 120 chrX:1922874-1922994 1.0000 120 chr3R:15292394-15292514 1.0000 120 chr3R:22664403-22664523 1.0000 120 chr3R:9328939-9329059 1.0000 120 chr2R:9988993-9989113 1.0000 120 chr4:1181856-1181976 1.0000 120 chrX:14839811-14839931 1.0000 120 chr3R:21161794-21161914 1.0000 120 chr2R:15818609-15818729 1.0000 120 chrX:2443956-2444076 1.0000 120 chr2L:18688831-18688951 1.0000 120 chr3L:20944331-20944451 1.0000 120 chr2L:6622748-6622868 1.0000 120 chr2L:5771306-5771426 1.0000 120 chrX:7935870-7935990 1.0000 120 chr3R:18215524-18215644 1.0000 120 chrX:2158999-2159119 1.0000 120 chr2R:23818387-23818507 1.0000 120 chr3L:26014159-26014279 1.0000 120 chrX:618695-618815 1.0000 120 chr2R:16202824-16202944 1.0000 120 chr2R:4012738-4012858 1.0000 120 chr3L:13486702-13486822 1.0000 120 chr2R:11469626-11469746 1.0000 120 chr3L:21026399-21026519 1.0000 120 chr2L:3058831-3058951 1.0000 120 chr3R:16573950-16574070 1.0000 120 chr2L:18859299-18859419 1.0000 120 chr2L:9576808-9576928 1.0000 120 chr3L:11258461-11258581 1.0000 120 chrX:17751797-17751917 1.0000 120 chr3R:5588268-5588388 1.0000 120 chr2L:6956885-6957005 1.0000 120 chr3L:15532739-15532859 1.0000 120 chr2R:20126379-20126499 1.0000 120 chr2L:974275-974395 1.0000 120 chrX:13822253-13822373 1.0000 120 chrX:8606272-8606392 1.0000 120 chr2R:12274369-12274489 1.0000 120 chr3R:4811989-4812109 1.0000 120 chr3R:24333316-24333436 1.0000 120 chr3R:15792597-15792717 1.0000 120 chrX:1880383-1880503 1.0000 120 chrX:5420842-5420962 1.0000 120 chr3R:24518253-24518373 1.0000 120 chrX:4530052-4530172 1.0000 120 chr3L:19791864-19791984 1.0000 120 chr2L:18666043-18666163 1.0000 120 chr3L:12668219-12668339 1.0000 120 chrX:20257388-20257508 1.0000 120 chr2L:222319-222439 1.0000 120 chr3L:9898585-9898705 1.0000 120 chr2L:1980731-1980851 1.0000 120 chr3L:13929342-13929462 1.0000 120 chr3R:30912444-30912564 1.0000 120 chrX:1478459-1478579 1.0000 120 chr2R:20906665-20906785 1.0000 120 chr2L:283249-283369 1.0000 120 chr3R:22236829-22236949 1.0000 120 chr2L:12351126-12351246 1.0000 120 chr3R:17002344-17002464 1.0000 120 chr2L:21260936-21261056 1.0000 120 chr3R:9637601-9637721 1.0000 120 chrX:9152176-9152296 1.0000 120 chr2L:13445623-13445743 1.0000 120 chr3L:16955319-16955439 1.0000 120 chr3R:10675288-10675408 1.0000 120 chr2R:25085550-25085670 1.0000 120 chr3R:18168547-18168667 1.0000 120 chr3R:12350646-12350766 1.0000 120 chr3R:11244130-11244250 1.0000 120 chr2L:10565779-10565899 1.0000 120 chr3L:5813195-5813315 1.0000 120 chr3R:15472756-15472876 1.0000 120 chr2R:24046794-24046914 1.0000 120 chr2L:73179-73299 1.0000 120 chr2L:10516525-10516645 1.0000 120 chr2L:21310032-21310152 1.0000 120 chrX:21117042-21117162 1.0000 120 chr2R:11095306-11095426 1.0000 120 chr2L:7258229-7258349 1.0000 120 chr3R:4775442-4775562 1.0000 120 chrX:7710905-7711025 1.0000 120 chr2R:4516476-4516596 1.0000 120 chrX:14602685-14602805 1.0000 120 chr3R:27137968-27138088 1.0000 120 chr3R:14894464-14894584 1.0000 120 chr2L:13060016-13060136 1.0000 120 chrX:18635411-18635531 1.0000 120 chr2L:11829400-11829520 1.0000 120 chrX:16782277-16782397 1.0000 120 chr3R:5368276-5368396 1.0000 120 chr3L:6189711-6189831 1.0000 120 chr2R:15147715-15147835 1.0000 120 chr3R:22023168-22023288 1.0000 120 chr2L:10756161-10756281 1.0000 120 chrX:10488119-10488239 1.0000 120 chrX:3068421-3068541 1.0000 120 chr3R:27209163-27209283 1.0000 120 chr2R:14411710-14411830 1.0000 120 chr3R:26937642-26937762 1.0000 120 chr3L:628486-628606 1.0000 120 chr3L:9859712-9859832 1.0000 120 chr3R:10161303-10161423 1.0000 120 chr2R:17545103-17545223 1.0000 120 chr2L:22536670-22536790 1.0000 120 chr2L:5981483-5981603 1.0000 120 chr2R:15114512-15114632 1.0000 120 chr3L:5932611-5932731 1.0000 120 chrX:6524367-6524487 1.0000 120 chr3R:16025980-16026100 1.0000 120 chr2R:8928075-8928195 1.0000 120 chr2L:2753210-2753330 1.0000 120 chr2L:18590811-18590931 1.0000 120 chr2L:3472397-3472517 1.0000 120 chrX:3719792-3719912 1.0000 120 chr3L:6606059-6606179 1.0000 120 chr2L:8692545-8692665 1.0000 120 chr3R:16748665-16748785 1.0000 120 chr2R:13055064-13055184 1.0000 120 chrX:1236720-1236840 1.0000 120 chr3R:26172161-26172281 1.0000 120 chr2L:17963201-17963321 1.0000 120 chr3L:1295797-1295917 1.0000 120 chr2L:5543132-5543252 1.0000 120 chr3L:872583-872703 1.0000 120 chr3L:17659317-17659437 1.0000 120 chrX:19208200-19208320 1.0000 120 chr3R:10696583-10696703 1.0000 120 chr3L:19834275-19834395 1.0000 120 chrX:16967523-16967643 1.0000 120 chr3R:8747624-8747744 1.0000 120 chr2R:23652369-23652489 1.0000 120 chr3L:3983473-3983593 1.0000 120 chrX:2012943-2013063 1.0000 120 chr2R:8144867-8144987 1.0000 120 chrX:5901963-5902083 1.0000 120 chr2L:6700943-6701063 1.0000 120 chr2L:530346-530466 1.0000 120 chr3L:21049604-21049724 1.0000 120 chr3R:23923001-23923121 1.0000 120 chrX:1512895-1513015 1.0000 120 chrX:5883514-5883634 1.0000 120 chrX:9356294-9356414 1.0000 120 chr2R:17726816-17726936 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9876/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9876.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.224 G 0.222 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.224 G 0.222 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCA MEME-1 width = 8 sites = 20 llr = 208 E-value = 5.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:::::a pos.-specific C ::1a:8a: probability G :99:a2:: matrix T a::::::: bits 2.2 ** * 2.0 * ** * 1.7 ***** ** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23652369-23652489 16 9.43e-06 TTCAGAGTGC TGGCGCCA TCCAGCTTAC chr2L:3472397-3472517 69 9.43e-06 CCTGTGCAGA TGGCGCCA CCATGACGCG chrX:7710905-7711025 110 9.43e-06 AATCCATAGA TGGCGCCA GAT chr2L:73179-73299 65 9.43e-06 ATATACACAA TGGCGCCA CTGTTGTTTT chr3L:16955319-16955439 44 9.43e-06 TCTTCCACAG TGGCGCCA TCTGCAGTCG chrX:9152176-9152296 61 9.43e-06 CACCGCTAGG TGGCGCCA GTTAATAGCA chr2R:20906665-20906785 91 9.43e-06 CAACGGTAGA TGGCGCCA GTGCAACATT chr3R:16573950-16574070 88 9.43e-06 CTGCACCAGG TGGCGCCA CTTCCGCGCG chr3L:6264593-6264713 10 9.43e-06 AAGATTTAC TGGCGCCA TCTAGGGCCT chrX:6110039-6110159 65 9.43e-06 GGACGCCAGG TGGCGCCA CACATGTAGT chr3L:20097385-20097505 55 9.43e-06 ATTCATTTGA TGGCGCCA TCTAGCAGAT chrX:17820348-17820468 19 9.43e-06 TCGTGTGCAC TGGCGCCA CCTAGGTATG chr2R:17726816-17726936 92 1.88e-05 CGATTACACT TGGCGGCA AACAGCTGTG chrX:5883514-5883634 72 1.88e-05 GTCCGCCAGA TGGCGGCA CAGCATGAAA chr2L:9697686-9697806 33 1.88e-05 GGCGTGGTCG TGGCGGCA GGGGGCGTGC chr2R:12171276-12171396 15 1.88e-05 ATCCAAACGG TGGCGGCA TCATTTATCT chr3R:16748665-16748785 86 2.83e-05 TGCAACTCAG TGCCGCCA TCTGACGTAA chrX:8606272-8606392 50 2.83e-05 GGTTGCGCTT TGCCGCCA ATAGATCCGA chr2L:283249-283369 56 4.03e-05 ATCGATATGA TAGCGCCA CTTGACGTTT chr3R:9328939-9329059 29 4.03e-05 TACCAGAACC TAGCGCCA ATTTCAACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23652369-23652489 9.4e-06 15_[+1]_97 chr2L:3472397-3472517 9.4e-06 68_[+1]_44 chrX:7710905-7711025 9.4e-06 109_[+1]_3 chr2L:73179-73299 9.4e-06 64_[+1]_48 chr3L:16955319-16955439 9.4e-06 43_[+1]_69 chrX:9152176-9152296 9.4e-06 60_[+1]_52 chr2R:20906665-20906785 9.4e-06 90_[+1]_22 chr3R:16573950-16574070 9.4e-06 87_[+1]_25 chr3L:6264593-6264713 9.4e-06 9_[+1]_103 chrX:6110039-6110159 9.4e-06 64_[+1]_48 chr3L:20097385-20097505 9.4e-06 54_[+1]_58 chrX:17820348-17820468 9.4e-06 18_[+1]_94 chr2R:17726816-17726936 1.9e-05 91_[+1]_21 chrX:5883514-5883634 1.9e-05 71_[+1]_41 chr2L:9697686-9697806 1.9e-05 32_[+1]_80 chr2R:12171276-12171396 1.9e-05 14_[+1]_98 chr3R:16748665-16748785 2.8e-05 85_[+1]_27 chrX:8606272-8606392 2.8e-05 49_[+1]_63 chr2L:283249-283369 4e-05 55_[+1]_57 chr3R:9328939-9329059 4e-05 28_[+1]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCA width=8 seqs=20 chr2R:23652369-23652489 ( 16) TGGCGCCA 1 chr2L:3472397-3472517 ( 69) TGGCGCCA 1 chrX:7710905-7711025 ( 110) TGGCGCCA 1 chr2L:73179-73299 ( 65) TGGCGCCA 1 chr3L:16955319-16955439 ( 44) TGGCGCCA 1 chrX:9152176-9152296 ( 61) TGGCGCCA 1 chr2R:20906665-20906785 ( 91) TGGCGCCA 1 chr3R:16573950-16574070 ( 88) TGGCGCCA 1 chr3L:6264593-6264713 ( 10) TGGCGCCA 1 chrX:6110039-6110159 ( 65) TGGCGCCA 1 chr3L:20097385-20097505 ( 55) TGGCGCCA 1 chrX:17820348-17820468 ( 19) TGGCGCCA 1 chr2R:17726816-17726936 ( 92) TGGCGGCA 1 chrX:5883514-5883634 ( 72) TGGCGGCA 1 chr2L:9697686-9697806 ( 33) TGGCGGCA 1 chr2R:12171276-12171396 ( 15) TGGCGGCA 1 chr3R:16748665-16748785 ( 86) TGCCGCCA 1 chrX:8606272-8606392 ( 50) TGCCGCCA 1 chr2L:283249-283369 ( 56) TAGCGCCA 1 chr3R:9328939-9329059 ( 29) TAGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 5.8e-007 -1097 -1097 -1097 188 -150 -1097 202 -1097 -1097 -117 202 -1097 -1097 216 -1097 -1097 -1097 -1097 217 -1097 -1097 183 -15 -1097 -1097 216 -1097 -1097 182 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.8e-007 0.000000 0.000000 0.000000 1.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 regular expression -------------------------------------------------------------------------------- TGGCG[CG]CA -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCGATAG MEME-2 width = 8 sites = 16 llr = 165 E-value = 3.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::a:a: pos.-specific C ::a::::: probability G :::a:::8 matrix T :a:::a:3 bits 2.2 ** 2.0 *** * 1.7 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATCGATAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23923001-23923121 81 1.84e-05 GACCTGAGCA ATCGATAG TTCGGTGATG chr3L:19834275-19834395 75 1.84e-05 CAGTGGGGCT ATCGATAG CTAATCGATT chr3R:16025980-16026100 33 1.84e-05 CACTTTTTTT ATCGATAG CGAGTGTGAG chr2L:5981483-5981603 3 1.84e-05 AT ATCGATAG CAAATAAAAT chr3R:11244130-11244250 32 1.84e-05 TATCAAGGGC ATCGATAG TTTGGCTGCT chr3R:12350646-12350766 45 1.84e-05 AGCGATAGGT ATCGATAG CGAGGTCAGA chr3R:9637601-9637721 31 1.84e-05 CTTTGCGCAT ATCGATAG TTGCTTACCT chr3R:17002344-17002464 47 1.84e-05 TGCCACCGCC ATCGATAG TTTTCTTACA chrX:5420842-5420962 56 1.84e-05 GCCCACGCTC ATCGATAG GTATCGATTG chr2L:6956885-6957005 89 1.84e-05 CCTGGCAGAT ATCGATAG GCCCATCGAT chr2R:23856851-23856971 78 1.84e-05 GGCGATACTT ATCGATAG CTTTGCTATT chr3R:17040571-17040691 98 1.84e-05 TTGTCGATAT ATCGATAG GCTGGCCAAT chrX:9356294-9356414 42 4.08e-05 CTCATCGCGC ATCGATAT TTCGCCCATC chr2L:283249-283369 46 4.08e-05 TTAAAGCCAA ATCGATAT GATAGCGCCA chrX:7935870-7935990 65 4.08e-05 TTCAAGACCT ATCGATAT CCTGATATAC chr2R:5693362-5693482 4 4.08e-05 AAA ATCGATAT ATCATATGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23923001-23923121 1.8e-05 80_[+2]_32 chr3L:19834275-19834395 1.8e-05 74_[+2]_38 chr3R:16025980-16026100 1.8e-05 32_[+2]_80 chr2L:5981483-5981603 1.8e-05 2_[+2]_110 chr3R:11244130-11244250 1.8e-05 31_[+2]_81 chr3R:12350646-12350766 1.8e-05 44_[+2]_68 chr3R:9637601-9637721 1.8e-05 30_[+2]_82 chr3R:17002344-17002464 1.8e-05 46_[+2]_66 chrX:5420842-5420962 1.8e-05 55_[+2]_57 chr2L:6956885-6957005 1.8e-05 88_[+2]_24 chr2R:23856851-23856971 1.8e-05 77_[+2]_35 chr3R:17040571-17040691 1.8e-05 97_[+2]_15 chrX:9356294-9356414 4.1e-05 41_[+2]_71 chr2L:283249-283369 4.1e-05 45_[+2]_67 chrX:7935870-7935990 4.1e-05 64_[+2]_48 chr2R:5693362-5693482 4.1e-05 3_[+2]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCGATAG width=8 seqs=16 chr3R:23923001-23923121 ( 81) ATCGATAG 1 chr3L:19834275-19834395 ( 75) ATCGATAG 1 chr3R:16025980-16026100 ( 33) ATCGATAG 1 chr2L:5981483-5981603 ( 3) ATCGATAG 1 chr3R:11244130-11244250 ( 32) ATCGATAG 1 chr3R:12350646-12350766 ( 45) ATCGATAG 1 chr3R:9637601-9637721 ( 31) ATCGATAG 1 chr3R:17002344-17002464 ( 47) ATCGATAG 1 chrX:5420842-5420962 ( 56) ATCGATAG 1 chr2L:6956885-6957005 ( 89) ATCGATAG 1 chr2R:23856851-23856971 ( 78) ATCGATAG 1 chr3R:17040571-17040691 ( 98) ATCGATAG 1 chrX:9356294-9356414 ( 42) ATCGATAT 1 chr2L:283249-283369 ( 46) ATCGATAT 1 chrX:7935870-7935990 ( 65) ATCGATAT 1 chr2R:5693362-5693482 ( 4) ATCGATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 3.2e-001 182 -1064 -1064 -1064 -1064 -1064 -1064 188 -1064 216 -1064 -1064 -1064 -1064 217 -1064 182 -1064 -1064 -1064 -1064 -1064 -1064 188 182 -1064 -1064 -1064 -1064 -1064 176 -12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.2e-001 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-2 regular expression -------------------------------------------------------------------------------- ATCGATA[GT] -------------------------------------------------------------------------------- Time 14.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCTGC MEME-3 width = 8 sites = 24 llr = 226 E-value = 6.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a2:a2:a probability G a:28::9: matrix T ::62:81: bits 2.2 ** * * 2.0 ** * * 1.7 ** * * 1.5 ** ** ** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.6 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22664403-22664523 75 9.03e-06 ACATTCGATG GCTGCTGC TTTGATTTTA chrX:15319422-15319542 106 9.03e-06 AGACTGCGTG GCTGCTGC GTTCCGT chr3L:13845400-13845520 49 9.03e-06 TACGAGACAA GCTGCTGC TCGAACGCAT chr2L:6971896-6972016 51 9.03e-06 TACATCACTT GCTGCTGC TTCACCATCT chr3L:18764177-18764297 112 9.03e-06 ggactggagg gctgctgc t chr2L:9697686-9697806 88 9.03e-06 ggccgctgct gctgctgc tagcctggtc chr2R:10520659-10520779 6 9.03e-06 ctgct gctgctgc cgctgcttgc chr3R:24333316-24333436 63 1.64e-05 TGTGACCATT GCGGCTGC AGTGTGAACA chrX:19208200-19208320 23 3.14e-05 GTTGGGTCTG GCTGCCGC ATCATAGCAG chrX:1236720-1236840 57 3.14e-05 AAAGTGCTTA GCCGCTGC TCGAACCAAA chr2L:1980731-1980851 54 3.14e-05 TGGGCGATAG GCCGCTGC GGTCACACTG chr3L:19791864-19791984 113 3.14e-05 TTTATTAAGC GCTGCCGC chr2L:14141323-14141443 19 3.14e-05 ATCCTTGTAC GCCGCTGC TCTGTACAGT chr2R:7066676-7066796 69 3.14e-05 ACTTCCAGGC GCCGCTGC CATGAGTCGC chr3L:5932611-5932731 35 4.24e-05 TTTCAGGGTC GCTTCTGC GCCTATTGAC chr3R:16573950-16574070 74 4.24e-05 TACATTCGCA GCTTCTGC ACCAGGTGGC chr3R:9356490-9356610 14 4.24e-05 AGCAGCACCC GCTTCTGC CTCCGCTCGC chrX:6524367-6524487 103 4.85e-05 TGTTCGAAAC GCGGCCGC ATGGCCGCAC chr2L:222319-222439 38 4.85e-05 TTGAAGAAGA GCGGCCGC AGCGGGCACA chr2R:7407774-7407894 18 4.85e-05 ACGATTCAAT GCGGCCGC ACTGCTGGTA chr3L:19834275-19834395 1 5.95e-05 . GCTGCTTC TTCTTCAAGA chr2R:23856851-23856971 35 5.95e-05 TGCTCATCTT GCTGCTTC TATAAAAAAC chr3R:29077733-29077853 70 5.95e-05 GCCTCCTACC GCTGCTTC TTGCCACTTG chr2L:20148564-20148684 28 7.47e-05 TATAAAGCGC GCGTCTGC CGTGCATTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22664403-22664523 9e-06 74_[+3]_38 chrX:15319422-15319542 9e-06 105_[+3]_7 chr3L:13845400-13845520 9e-06 48_[+3]_64 chr2L:6971896-6972016 9e-06 50_[+3]_62 chr3L:18764177-18764297 9e-06 111_[+3]_1 chr2L:9697686-9697806 9e-06 87_[+3]_25 chr2R:10520659-10520779 9e-06 5_[+3]_107 chr3R:24333316-24333436 1.6e-05 62_[+3]_50 chrX:19208200-19208320 3.1e-05 22_[+3]_90 chrX:1236720-1236840 3.1e-05 56_[+3]_56 chr2L:1980731-1980851 3.1e-05 53_[+3]_59 chr3L:19791864-19791984 3.1e-05 112_[+3] chr2L:14141323-14141443 3.1e-05 18_[+3]_94 chr2R:7066676-7066796 3.1e-05 68_[+3]_44 chr3L:5932611-5932731 4.2e-05 34_[+3]_78 chr3R:16573950-16574070 4.2e-05 73_[+3]_39 chr3R:9356490-9356610 4.2e-05 13_[+3]_99 chrX:6524367-6524487 4.8e-05 102_[+3]_10 chr2L:222319-222439 4.8e-05 37_[+3]_75 chr2R:7407774-7407894 4.8e-05 17_[+3]_95 chr3L:19834275-19834395 6e-05 [+3]_112 chr2R:23856851-23856971 6e-05 34_[+3]_78 chr3R:29077733-29077853 6e-05 69_[+3]_43 chr2L:20148564-20148684 7.5e-05 27_[+3]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCTGC width=8 seqs=24 chr3R:22664403-22664523 ( 75) GCTGCTGC 1 chrX:15319422-15319542 ( 106) GCTGCTGC 1 chr3L:13845400-13845520 ( 49) GCTGCTGC 1 chr2L:6971896-6972016 ( 51) GCTGCTGC 1 chr3L:18764177-18764297 ( 112) GCTGCTGC 1 chr2L:9697686-9697806 ( 88) GCTGCTGC 1 chr2R:10520659-10520779 ( 6) GCTGCTGC 1 chr3R:24333316-24333436 ( 63) GCGGCTGC 1 chrX:19208200-19208320 ( 23) GCTGCCGC 1 chrX:1236720-1236840 ( 57) GCCGCTGC 1 chr2L:1980731-1980851 ( 54) GCCGCTGC 1 chr3L:19791864-19791984 ( 113) GCTGCCGC 1 chr2L:14141323-14141443 ( 19) GCCGCTGC 1 chr2R:7066676-7066796 ( 69) GCCGCTGC 1 chr3L:5932611-5932731 ( 35) GCTTCTGC 1 chr3R:16573950-16574070 ( 74) GCTTCTGC 1 chr3R:9356490-9356610 ( 14) GCTTCTGC 1 chrX:6524367-6524487 ( 103) GCGGCCGC 1 chr2L:222319-222439 ( 38) GCGGCCGC 1 chr2R:7407774-7407894 ( 18) GCGGCCGC 1 chr3L:19834275-19834395 ( 1) GCTGCTTC 1 chr2R:23856851-23856971 ( 35) GCTGCTTC 1 chr3R:29077733-29077853 ( 70) GCTGCTTC 1 chr2L:20148564-20148684 ( 28) GCGTCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 6.7e-001 -1123 -1123 217 -1123 -1123 216 -1123 -1123 -1123 -43 -9 121 -1123 -1123 191 -70 -1123 216 -1123 -1123 -1123 -11 -1123 155 -1123 -1123 198 -111 -1123 216 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 6.7e-001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.208333 0.625000 0.000000 0.000000 0.833333 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.208333 0.000000 0.791667 0.000000 0.000000 0.875000 0.125000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[TG]GC[TC]GC -------------------------------------------------------------------------------- Time 20.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCASC MEME-4 width = 8 sites = 24 llr = 223 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::2:8:: pos.-specific C 1a:6a:6a probability G 9:a3:34: matrix T :::::::: bits 2.2 ** * * 2.0 ** * * 1.7 *** * * 1.5 *** * * Relative 1.3 *** * * Entropy 1.1 *** **** (13.4 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus G GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23652369-23652489 57 7.87e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr3R:12350646-12350766 1 7.87e-06 . GCGCCACC TACTGGCCGC chr2R:12274369-12274489 67 7.87e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC chr2R:15818609-15818729 85 7.87e-06 CACAAATGCA GCGCCACC TATGCGGGCA chr2R:16551959-16552079 46 7.87e-06 ATACAAAAGA GCGCCACC TAGAAAATAT chr3R:20948114-20948234 68 7.87e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr2L:16816067-16816187 69 7.87e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr2L:10516525-10516645 2 1.57e-05 A GCGCCAGC CGGGTTTCGT chr3R:20310493-20310613 77 2.96e-05 GTGAGTGTGG GCGCCGCC AGCAGCGTCA chr2L:10756161-10756281 49 4.35e-05 TGTTTATAAA GCGGCAGC GGATTGCCCG chr2R:24046794-24046914 24 4.35e-05 GGGTTGCCAG GCGCCGGC AAAGTATCAA chrX:1478459-1478579 88 4.35e-05 CAACACCAGC GCGCCGGC ATTTAGCTGC chrX:20257388-20257508 28 4.35e-05 AGCTAATTAA GCGGCAGC ACTGATTAGC chr3L:20944331-20944451 59 4.35e-05 AAACAAATGA GCGGCAGC AGGCAGAATA chrX:15986844-15986964 49 4.35e-05 CACATCACTT GCGGCAGC ATGAACTTTA chr3R:26535071-26535191 70 4.35e-05 GAATTTACAA GCGCCGGC AAAAATTTAC chr2L:7258229-7258349 30 5.34e-05 TTCTATTAAA GCGACACC TATCTTTGGC chrX:17751797-17751917 27 5.34e-05 ATGAGAGAAG GCGACACC TAGCGGTACA chrX:15653665-15653785 33 5.34e-05 AACGGCAAGA GCGACACC TATCGTCAGT chr2L:7890859-7890979 21 5.34e-05 CAACTGTGGT GCGACACC TAGTGTTCAT chr3R:4962760-4962880 70 5.95e-05 CACTGTAGGG GCGGCGCC TAAAAGTATG chr2L:9697686-9697806 59 7.54e-05 GCTCTTGTGG gcggcggc tgctgacgag chrX:4530052-4530172 62 9.12e-05 TAGATGTAGA CCGCCACC CAGGGTTGCA chr2R:16202824-16202944 86 1.07e-04 TAGGAAAATA CCGCCAGC GATCAGTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23652369-23652489 7.9e-06 56_[+4]_56 chr3R:12350646-12350766 7.9e-06 [+4]_112 chr2R:12274369-12274489 7.9e-06 66_[+4]_46 chr2R:15818609-15818729 7.9e-06 84_[+4]_28 chr2R:16551959-16552079 7.9e-06 45_[+4]_67 chr3R:20948114-20948234 7.9e-06 67_[+4]_45 chr2L:16816067-16816187 7.9e-06 68_[+4]_44 chr2L:10516525-10516645 1.6e-05 1_[+4]_111 chr3R:20310493-20310613 3e-05 76_[+4]_36 chr2L:10756161-10756281 4.3e-05 48_[+4]_64 chr2R:24046794-24046914 4.3e-05 23_[+4]_89 chrX:1478459-1478579 4.3e-05 87_[+4]_25 chrX:20257388-20257508 4.3e-05 27_[+4]_85 chr3L:20944331-20944451 4.3e-05 58_[+4]_54 chrX:15986844-15986964 4.3e-05 48_[+4]_64 chr3R:26535071-26535191 4.3e-05 69_[+4]_43 chr2L:7258229-7258349 5.3e-05 29_[+4]_83 chrX:17751797-17751917 5.3e-05 26_[+4]_86 chrX:15653665-15653785 5.3e-05 32_[+4]_80 chr2L:7890859-7890979 5.3e-05 20_[+4]_92 chr3R:4962760-4962880 6e-05 69_[+4]_43 chr2L:9697686-9697806 7.5e-05 58_[+4]_54 chrX:4530052-4530172 9.1e-05 61_[+4]_51 chr2R:16202824-16202944 0.00011 85_[+4]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCASC width=8 seqs=24 chr2R:23652369-23652489 ( 57) GCGCCACC 1 chr3R:12350646-12350766 ( 1) GCGCCACC 1 chr2R:12274369-12274489 ( 67) GCGCCACC 1 chr2R:15818609-15818729 ( 85) GCGCCACC 1 chr2R:16551959-16552079 ( 46) GCGCCACC 1 chr3R:20948114-20948234 ( 68) GCGCCACC 1 chr2L:16816067-16816187 ( 69) GCGCCACC 1 chr2L:10516525-10516645 ( 2) GCGCCAGC 1 chr3R:20310493-20310613 ( 77) GCGCCGCC 1 chr2L:10756161-10756281 ( 49) GCGGCAGC 1 chr2R:24046794-24046914 ( 24) GCGCCGGC 1 chrX:1478459-1478579 ( 88) GCGCCGGC 1 chrX:20257388-20257508 ( 28) GCGGCAGC 1 chr3L:20944331-20944451 ( 59) GCGGCAGC 1 chrX:15986844-15986964 ( 49) GCGGCAGC 1 chr3R:26535071-26535191 ( 70) GCGCCGGC 1 chr2L:7258229-7258349 ( 30) GCGACACC 1 chrX:17751797-17751917 ( 27) GCGACACC 1 chrX:15653665-15653785 ( 33) GCGACACC 1 chr2L:7890859-7890979 ( 21) GCGACACC 1 chr3R:4962760-4962880 ( 70) GCGGCGCC 1 chr2L:9697686-9697806 ( 59) GCGGCGGC 1 chrX:4530052-4530172 ( 62) CCGCCACC 1 chr2R:16202824-16202944 ( 86) CCGCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 1.2e+001 -1123 -143 205 -1123 -1123 216 -1123 -1123 -1123 -1123 217 -1123 -76 138 17 -1123 -1123 216 -1123 -1123 140 -1123 17 -1123 -1123 138 91 -1123 -1123 216 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.2e+001 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.583333 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCASC MEME-4 regular expression -------------------------------------------------------------------------------- GCG[CG]C[AG][CG]C -------------------------------------------------------------------------------- Time 27.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACGTGA MEME-5 width = 8 sites = 11 llr = 117 E-value = 3.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::a pos.-specific C :8:a:::: probability G ::::a:a: matrix T a2:::a:: bits 2.2 ** * 2.0 * **** 1.7 * ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACGTGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14894464-14894584 25 1.45e-05 TGAAAGTGTA TCACGTGA TCAGTGTTCT chr2L:13205401-13205521 84 1.45e-05 TCCGCAAACA TCACGTGA TTCTGGCATG chr2L:12242730-12242850 69 1.45e-05 AACGAAAATG TCACGTGA CAAATTGCCG chr3R:20314260-20314380 36 1.45e-05 ATTGAACGAG TCACGTGA TTGTGTGCGT chr2R:11277404-11277524 68 1.45e-05 CCCATCGCGA TCACGTGA CTAGATAGGG chr2L:18640462-18640582 72 1.45e-05 TCGGGGCATG TCACGTGA TTTGCCGAAA chr2R:14971311-14971431 58 1.45e-05 AGCTATTAAA TCACGTGA TGTAATGATT chr3L:2414743-2414863 75 1.45e-05 TGCGACGATG TCACGTGA CTTTTTGGCC chrX:5177293-5177413 57 1.45e-05 TGTACGTAAA TCACGTGA TTTTTTTTAT chr3L:872583-872703 73 3.21e-05 TGACCGATAT TTACGTGA GCCGGCAAAT chr2L:6971896-6972016 98 3.21e-05 TGAGTAACGG TTACGTGA AGTTTACGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14894464-14894584 1.5e-05 24_[+5]_88 chr2L:13205401-13205521 1.5e-05 83_[+5]_29 chr2L:12242730-12242850 1.5e-05 68_[+5]_44 chr3R:20314260-20314380 1.5e-05 35_[+5]_77 chr2R:11277404-11277524 1.5e-05 67_[+5]_45 chr2L:18640462-18640582 1.5e-05 71_[+5]_41 chr2R:14971311-14971431 1.5e-05 57_[+5]_55 chr3L:2414743-2414863 1.5e-05 74_[+5]_38 chrX:5177293-5177413 1.5e-05 56_[+5]_56 chr3L:872583-872703 3.2e-05 72_[+5]_40 chr2L:6971896-6972016 3.2e-05 97_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACGTGA width=8 seqs=11 chr3R:14894464-14894584 ( 25) TCACGTGA 1 chr2L:13205401-13205521 ( 84) TCACGTGA 1 chr2L:12242730-12242850 ( 69) TCACGTGA 1 chr3R:20314260-20314380 ( 36) TCACGTGA 1 chr2R:11277404-11277524 ( 68) TCACGTGA 1 chr2L:18640462-18640582 ( 72) TCACGTGA 1 chr2R:14971311-14971431 ( 58) TCACGTGA 1 chr3L:2414743-2414863 ( 75) TCACGTGA 1 chrX:5177293-5177413 ( 57) TCACGTGA 1 chr3L:872583-872703 ( 73) TTACGTGA 1 chr2L:6971896-6972016 ( 98) TTACGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 3.1e+002 -1010 -1010 -1010 188 -1010 187 -1010 -57 182 -1010 -1010 -1010 -1010 215 -1010 -1010 -1010 -1010 217 -1010 -1010 -1010 -1010 188 -1010 -1010 217 -1010 182 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.1e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.000000 0.181818 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-5 regular expression -------------------------------------------------------------------------------- TCACGTGA -------------------------------------------------------------------------------- Time 33.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4052850-4052970 7.59e-01 120 chr2R:23997238-23997358 1.71e-01 120 chrX:9106559-9106679 9.88e-01 120 chrX:5177293-5177413 1.95e-02 56_[+5(1.45e-05)]_56 chr2R:7245098-7245218 2.06e-01 120 chr3L:2414743-2414863 1.33e-03 74_[+5(1.45e-05)]_38 chr3R:19491136-19491256 3.60e-01 120 chr2R:5128307-5128427 8.94e-01 120 chrX:17820348-17820468 4.83e-04 20_[+4(7.87e-06)]_92 chr3L:20097385-20097505 5.75e-03 54_[+1(9.43e-06)]_58 chr3L:16646980-16647100 7.72e-02 120 chr3R:6170908-6171028 1.30e-01 120 chr2R:20529477-20529597 9.68e-01 120 chr2R:14971311-14971431 9.16e-02 57_[+5(1.45e-05)]_55 chr2R:10520659-10520779 4.74e-03 2_[+3(9.03e-06)]_1_[+3(3.14e-05)]_\ 16_[+3(9.03e-06)]_77 chr2L:7890859-7890979 1.04e-01 20_[+4(5.34e-05)]_92 chrX:15910117-15910237 5.00e-01 120 chr3R:24031115-24031235 2.56e-01 120 chrX:5524704-5524824 6.85e-01 120 chrX:6110039-6110159 1.08e-03 64_[+1(9.43e-06)]_48 chr3R:20310493-20310613 3.53e-03 76_[+4(2.96e-05)]_36 chrX:16573830-16573950 3.51e-02 120 chr3L:14972723-14972843 9.64e-01 120 chr2L:18640462-18640582 7.82e-02 71_[+5(1.45e-05)]_41 chrX:13805730-13805850 9.98e-01 120 chr2R:5693362-5693482 3.55e-01 3_[+2(4.08e-05)]_109 chr2R:12171276-12171396 5.26e-03 14_[+1(1.88e-05)]_98 chrX:17229949-17230069 9.34e-01 120 chrX:5671778-5671898 1.05e-01 120 chr3R:14723527-14723647 4.01e-01 120 chr3L:21446229-21446349 5.12e-01 120 chr2L:838121-838241 6.43e-01 120 chr3L:6059220-6059340 9.62e-01 120 chrX:15653665-15653785 5.36e-02 32_[+4(5.34e-05)]_80 chr2L:9697686-9697806 7.03e-05 32_[+1(1.88e-05)]_21_[+3(1.64e-05)]_\ 12_[+3(9.03e-06)]_31 chr3R:16957895-16958015 5.43e-01 120 chr2R:11277404-11277524 1.23e-01 67_[+5(1.45e-05)]_45 chr4:867069-867189 5.33e-01 120 chr3R:31636616-31636736 8.26e-01 120 chr2R:5122229-5122349 9.07e-01 120 chr3L:22277341-22277461 9.97e-01 120 chr3R:9356490-9356610 1.96e-02 13_[+3(4.24e-05)]_99 chrX:15574509-15574629 9.94e-01 120 chr2R:25183065-25183185 7.70e-01 120 chr3R:20314260-20314380 6.61e-02 35_[+5(1.45e-05)]_77 chr3L:27267094-27267214 9.94e-01 120 chr2R:7066676-7066796 1.46e-02 68_[+3(3.14e-05)]_44 chr3L:8853021-8853141 8.30e-01 120 chr3L:4553540-4553660 8.79e-01 120 chrX:18366695-18366815 1.42e-01 120 chr3R:25329115-25329235 3.29e-01 120 chr2L:12242730-12242850 3.42e-02 68_[+5(1.45e-05)]_44 chr2R:23180960-23181080 3.46e-01 120 chr2R:18356355-18356475 2.79e-01 120 chr3R:26535071-26535191 3.72e-02 69_[+4(4.35e-05)]_43 chrX:10385786-10385906 8.65e-01 120 chr3R:17040571-17040691 1.97e-02 97_[+2(1.84e-05)]_15 chrX:16840042-16840162 3.98e-01 120 chr3L:19140518-19140638 5.42e-01 120 chr2L:14013659-14013779 1.74e-02 120 chr4:1030967-1031087 6.99e-01 120 chr2R:4188162-4188282 7.28e-01 120 chr2R:8751619-8751739 9.85e-01 120 chr3L:18764177-18764297 5.59e-03 10_[+3(9.03e-06)]_93_[+3(9.03e-06)]_\ 1 chr2L:20148564-20148684 6.44e-02 27_[+3(7.47e-05)]_85 chr3R:27988956-27989076 2.76e-01 120 chr3L:15104179-15104299 7.81e-02 120 chr3R:26010912-26011032 5.87e-01 120 chr2L:6971896-6972016 1.64e-03 50_[+3(9.03e-06)]_39_[+5(3.21e-05)]_\ 15 chr2R:24292842-24292962 9.57e-01 120 chr2L:3435165-3435285 4.91e-01 120 chr2L:5801088-5801208 4.71e-01 120 chr2R:7407774-7407894 2.46e-02 17_[+3(4.85e-05)]_95 chr2L:16816067-16816187 3.62e-03 68_[+4(7.87e-06)]_44 chr2R:23097110-23097230 3.33e-01 120 chr2L:13205401-13205521 1.10e-02 83_[+5(1.45e-05)]_29 chr3R:26566878-26566998 1.46e-01 120 chr2L:15254410-15254530 9.98e-01 120 chr3R:29077733-29077853 3.01e-01 69_[+3(5.95e-05)]_43 chr3L:6054845-6054965 6.06e-01 120 chr2L:1730599-1730719 4.99e-01 120 chr3R:4962760-4962880 3.23e-02 69_[+4(5.95e-05)]_43 chr3R:9055222-9055342 3.33e-01 120 chr3L:8748986-8749106 7.24e-01 120 chr2L:12520401-12520521 9.46e-01 120 chr2R:17062634-17062754 3.93e-02 120 chr3L:13845400-13845520 1.18e-02 48_[+3(9.03e-06)]_64 chr2L:14094762-14094882 6.70e-01 120 chrX:15319422-15319542 1.07e-02 105_[+3(9.03e-06)]_7 chr3L:15234629-15234749 4.39e-01 120 chrX:17175890-17176010 2.25e-01 120 chr2L:2967229-2967349 6.87e-01 120 chr3L:199222-199342 2.02e-01 120 chr4:43763-43883 9.68e-01 120 chr3R:20948114-20948234 2.51e-02 67_[+4(7.87e-06)]_45 chr3R:9677782-9677902 4.02e-01 120 chr2R:16551959-16552079 2.93e-02 45_[+4(7.87e-06)]_67 chr2R:21535554-21535674 3.78e-01 120 chrX:15986844-15986964 2.66e-03 48_[+4(4.35e-05)]_64 chr2R:23856851-23856971 3.98e-03 34_[+3(5.95e-05)]_35_[+2(1.84e-05)]_\ 35 chr3L:13411173-13411293 1.68e-01 120 chr2R:21514432-21514552 2.78e-01 120 chr3R:16099099-16099219 6.32e-01 120 chr2L:14141323-14141443 1.64e-01 18_[+3(3.14e-05)]_94 chr3L:6264593-6264713 3.29e-03 9_[+1(9.43e-06)]_103 chrX:1922874-1922994 9.98e-02 120 chr3R:15292394-15292514 3.44e-01 120 chr3R:22664403-22664523 2.33e-02 74_[+3(9.03e-06)]_38 chr3R:9328939-9329059 1.65e-01 28_[+1(4.03e-05)]_84 chr2R:9988993-9989113 4.90e-01 120 chr4:1181856-1181976 9.89e-01 120 chrX:14839811-14839931 9.30e-01 120 chr3R:21161794-21161914 8.82e-01 120 chr2R:15818609-15818729 2.18e-02 84_[+4(7.87e-06)]_28 chrX:2443956-2444076 4.49e-02 120 chr2L:18688831-18688951 3.10e-01 120 chr3L:20944331-20944451 7.15e-03 58_[+4(4.35e-05)]_54 chr2L:6622748-6622868 9.28e-01 120 chr2L:5771306-5771426 3.31e-01 120 chrX:7935870-7935990 1.03e-01 64_[+2(4.08e-05)]_48 chr3R:18215524-18215644 4.36e-01 120 chrX:2158999-2159119 1.18e-01 120 chr2R:23818387-23818507 6.28e-01 120 chr3L:26014159-26014279 8.75e-01 120 chrX:618695-618815 6.78e-01 120 chr2R:16202824-16202944 1.62e-03 83_[+1(7.38e-05)]_29 chr2R:4012738-4012858 1.21e-01 120 chr3L:13486702-13486822 6.69e-01 120 chr2R:11469626-11469746 9.85e-01 120 chr3L:21026399-21026519 1.69e-01 120 chr2L:3058831-3058951 2.62e-01 120 chr3R:16573950-16574070 9.08e-05 73_[+3(4.24e-05)]_6_[+1(9.43e-06)]_\ 25 chr2L:18859299-18859419 6.73e-01 120 chr2L:9576808-9576928 6.27e-01 120 chr3L:11258461-11258581 9.91e-01 120 chrX:17751797-17751917 9.29e-02 26_[+4(5.34e-05)]_86 chr3R:5588268-5588388 2.66e-01 120 chr2L:6956885-6957005 1.55e-02 88_[+2(1.84e-05)]_24 chr3L:15532739-15532859 9.64e-01 120 chr2R:20126379-20126499 5.25e-01 120 chr2L:974275-974395 4.28e-01 120 chrX:13822253-13822373 5.68e-01 120 chrX:8606272-8606392 4.34e-04 49_[+1(2.83e-05)]_25_[+2(4.08e-05)]_\ 30 chr2R:12274369-12274489 1.44e-03 66_[+4(7.87e-06)]_2_[+4(9.89e-05)]_\ 36 chr3R:4811989-4812109 1.28e-01 120 chr3R:24333316-24333436 2.57e-02 62_[+3(1.64e-05)]_50 chr3R:15792597-15792717 6.86e-01 120 chrX:1880383-1880503 6.04e-01 120 chrX:5420842-5420962 1.94e-02 55_[+2(1.84e-05)]_57 chr3R:24518253-24518373 8.64e-01 120 chrX:4530052-4530172 1.52e-02 61_[+4(9.12e-05)]_51 chr3L:19791864-19791984 4.88e-02 112_[+3(3.14e-05)] chr2L:18666043-18666163 2.20e-01 120 chr3L:12668219-12668339 2.00e-01 120 chrX:20257388-20257508 2.48e-03 27_[+4(4.35e-05)]_85 chr2L:222319-222439 5.07e-02 37_[+3(4.85e-05)]_75 chr3L:9898585-9898705 6.90e-01 120 chr2L:1980731-1980851 5.11e-03 53_[+3(3.14e-05)]_59 chr3L:13929342-13929462 2.37e-01 120 chr3R:30912444-30912564 7.40e-01 120 chrX:1478459-1478579 5.12e-02 87_[+4(4.35e-05)]_25 chr2R:20906665-20906785 6.09e-03 90_[+1(9.43e-06)]_22 chr2L:283249-283369 7.44e-04 45_[+2(4.08e-05)]_2_[+1(4.03e-05)]_\ 57 chr3R:22236829-22236949 9.13e-01 120 chr2L:12351126-12351246 9.67e-01 120 chr3R:17002344-17002464 7.24e-03 46_[+2(1.84e-05)]_66 chr2L:21260936-21261056 8.18e-01 120 chr3R:9637601-9637721 1.93e-02 30_[+2(1.84e-05)]_82 chrX:9152176-9152296 9.55e-03 60_[+1(9.43e-06)]_52 chr2L:13445623-13445743 7.13e-01 120 chr3L:16955319-16955439 7.62e-03 43_[+1(9.43e-06)]_69 chr3R:10675288-10675408 7.48e-01 120 chr2R:25085550-25085670 1.47e-01 120 chr3R:18168547-18168667 8.67e-01 120 chr3R:12350646-12350766 2.82e-04 [+4(7.87e-06)]_36_[+2(1.84e-05)]_68 chr3R:11244130-11244250 2.48e-03 31_[+2(1.84e-05)]_81 chr2L:10565779-10565899 7.97e-01 120 chr3L:5813195-5813315 4.12e-01 120 chr3R:15472756-15472876 9.69e-01 120 chr2R:24046794-24046914 4.00e-02 23_[+4(4.35e-05)]_89 chr2L:73179-73299 1.31e-02 64_[+1(9.43e-06)]_48 chr2L:10516525-10516645 3.42e-02 1_[+4(1.57e-05)]_111 chr2L:21310032-21310152 8.42e-01 120 chrX:21117042-21117162 2.57e-01 120 chr2R:11095306-11095426 9.14e-01 120 chr2L:7258229-7258349 1.78e-01 29_[+4(5.34e-05)]_83 chr3R:4775442-4775562 9.49e-01 120 chrX:7710905-7711025 1.80e-03 109_[+1(9.43e-06)]_3 chr2R:4516476-4516596 5.43e-01 120 chrX:14602685-14602805 3.84e-01 120 chr3R:27137968-27138088 7.09e-01 120 chr3R:14894464-14894584 5.67e-02 24_[+5(1.45e-05)]_88 chr2L:13060016-13060136 1.76e-01 120 chrX:18635411-18635531 6.80e-01 120 chr2L:11829400-11829520 5.65e-01 120 chrX:16782277-16782397 1.38e-01 120 chr3R:5368276-5368396 6.85e-01 120 chr3L:6189711-6189831 7.53e-01 120 chr2R:15147715-15147835 9.29e-01 120 chr3R:22023168-22023288 2.30e-02 120 chr2L:10756161-10756281 1.83e-02 48_[+4(4.35e-05)]_64 chrX:10488119-10488239 8.33e-01 120 chrX:3068421-3068541 2.82e-01 120 chr3R:27209163-27209283 9.42e-01 120 chr2R:14411710-14411830 4.52e-01 120 chr3R:26937642-26937762 6.10e-01 120 chr3L:628486-628606 4.04e-01 120 chr3L:9859712-9859832 9.43e-01 120 chr3R:10161303-10161423 7.61e-01 120 chr2R:17545103-17545223 1.09e-01 120 chr2L:22536670-22536790 9.96e-01 120 chr2L:5981483-5981603 3.52e-03 2_[+2(1.84e-05)]_110 chr2R:15114512-15114632 9.09e-01 120 chr3L:5932611-5932731 1.94e-01 34_[+3(4.24e-05)]_78 chrX:6524367-6524487 1.24e-03 79_[+1(4.97e-05)]_15_[+3(4.85e-05)]_\ 10 chr3R:16025980-16026100 4.25e-02 32_[+2(1.84e-05)]_80 chr2R:8928075-8928195 3.12e-02 120 chr2L:2753210-2753330 7.93e-01 120 chr2L:18590811-18590931 1.61e-01 120 chr2L:3472397-3472517 1.81e-04 70_[+4(7.87e-06)]_42 chrX:3719792-3719912 2.31e-01 120 chr3L:6606059-6606179 2.97e-01 120 chr2L:8692545-8692665 9.98e-01 120 chr3R:16748665-16748785 3.98e-03 85_[+1(2.83e-05)]_27 chr2R:13055064-13055184 7.63e-01 120 chrX:1236720-1236840 9.59e-02 56_[+3(3.14e-05)]_56 chr3R:26172161-26172281 8.88e-01 120 chr2L:17963201-17963321 1.23e-01 120 chr3L:1295797-1295917 1.93e-01 120 chr2L:5543132-5543252 8.33e-01 120 chr3L:872583-872703 1.18e-03 72_[+5(3.21e-05)]_40 chr3L:17659317-17659437 4.62e-01 120 chrX:19208200-19208320 2.96e-02 22_[+3(3.14e-05)]_90 chr3R:10696583-10696703 4.69e-01 120 chr3L:19834275-19834395 4.34e-03 [+3(5.95e-05)]_66_[+2(1.84e-05)]_38 chrX:16967523-16967643 7.19e-02 120 chr3R:8747624-8747744 2.88e-01 120 chr2R:23652369-23652489 2.82e-04 15_[+1(9.43e-06)]_33_[+4(7.87e-06)]_\ 56 chr3L:3983473-3983593 5.73e-01 120 chrX:2012943-2013063 2.89e-01 120 chr2R:8144867-8144987 9.07e-01 120 chrX:5901963-5902083 7.81e-01 120 chr2L:6700943-6701063 6.98e-01 120 chr2L:530346-530466 4.38e-01 120 chr3L:21049604-21049724 1.18e-01 120 chr3R:23923001-23923121 1.07e-02 80_[+2(1.84e-05)]_32 chrX:1512895-1513015 6.58e-01 120 chrX:5883514-5883634 5.01e-03 71_[+1(1.88e-05)]_41 chrX:9356294-9356414 1.09e-01 41_[+2(4.08e-05)]_71 chr2R:17726816-17726936 4.76e-02 91_[+1(1.88e-05)]_21 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************