******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9817.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10601766-10601886 1.0000 120 chrX:7706444-7706564 1.0000 120 chr3L:13356178-13356298 1.0000 120 chr3L:16310120-16310240 1.0000 120 chrX:11391643-11391763 1.0000 120 chr3L:22276810-22276930 1.0000 120 chr3L:16146681-16146801 1.0000 120 chr3R:23969567-23969687 1.0000 120 chr3R:22121353-22121473 1.0000 120 chr2L:17784772-17784892 1.0000 120 chrX:3109040-3109160 1.0000 120 chr3L:3772749-3772869 1.0000 120 chr3L:7528425-7528545 1.0000 120 chr2R:16673018-16673138 1.0000 120 chr3L:11785435-11785555 1.0000 120 chrX:15653653-15653773 1.0000 120 chrX:17820344-17820464 1.0000 120 chr2R:10439082-10439202 1.0000 120 chr3R:18508425-18508545 1.0000 120 chrX:19964319-19964439 1.0000 120 chr3L:630194-630314 1.0000 120 chr3R:8784942-8785062 1.0000 120 chr3R:21852705-21852825 1.0000 120 chr3R:24318434-24318554 1.0000 120 chr2L:2348638-2348758 1.0000 120 chr2R:9756274-9756394 1.0000 120 chr2L:937037-937157 1.0000 120 chr3R:8930280-8930400 1.0000 120 chrX:15594624-15594744 1.0000 120 chr3L:4254366-4254486 1.0000 120 chr2L:9494866-9494986 1.0000 120 chr3R:23820369-23820489 1.0000 120 chr2L:9564632-9564752 1.0000 120 chr2L:19416053-19416173 1.0000 120 chrX:11885507-11885627 1.0000 120 chr3R:15119864-15119984 1.0000 120 chr3L:8748978-8749098 1.0000 120 chrX:9004487-9004607 1.0000 120 chrX:17856841-17856961 1.0000 120 chr3L:19216553-19216673 1.0000 120 chr3R:14308912-14309032 1.0000 120 chrX:18094851-18094971 1.0000 120 chr3L:6086140-6086260 1.0000 120 chr3R:26717512-26717632 1.0000 120 chrX:15532166-15532286 1.0000 120 chrX:17696797-17696917 1.0000 120 chr3L:4242556-4242676 1.0000 120 chr2R:20257428-20257548 1.0000 120 chrX:10600687-10600807 1.0000 120 chr3L:20827375-20827495 1.0000 120 chr3R:7591350-7591470 1.0000 120 chr3L:5359476-5359596 1.0000 120 chrX:11379295-11379415 1.0000 120 chr2R:10400128-10400248 1.0000 120 chr3R:26280485-26280605 1.0000 120 chr2R:9742925-9743045 1.0000 120 chrX:8533652-8533772 1.0000 120 chr2L:21310229-21310349 1.0000 120 chrX:14234114-14234234 1.0000 120 chr3R:28118209-28118329 1.0000 120 chr3L:22277307-22277427 1.0000 120 chr3R:15292408-15292528 1.0000 120 chr3L:4025860-4025980 1.0000 120 chrX:7104527-7104647 1.0000 120 chrX:10387790-10387910 1.0000 120 chrX:15120215-15120335 1.0000 120 chr3L:3382025-3382145 1.0000 120 chr3L:6943994-6944114 1.0000 120 chrX:16587276-16587396 1.0000 120 chr2R:8650572-8650692 1.0000 120 chr3R:19491175-19491295 1.0000 120 chr3L:751890-752010 1.0000 120 chr3L:1151787-1151907 1.0000 120 chr3L:7510860-7510980 1.0000 120 chrX:18837130-18837250 1.0000 120 chrX:3714130-3714250 1.0000 120 chr3L:2845322-2845442 1.0000 120 chr3R:8354552-8354672 1.0000 120 chr3R:31636678-31636798 1.0000 120 chr3R:7892815-7892935 1.0000 120 chr3R:21140575-21140695 1.0000 120 chr2L:9779310-9779430 1.0000 120 chr2L:18150741-18150861 1.0000 120 chr3L:9614094-9614214 1.0000 120 chrX:7162646-7162766 1.0000 120 chr3R:26494339-26494459 1.0000 120 chr2L:18966887-18967007 1.0000 120 chr3R:17526158-17526278 1.0000 120 chr3R:15347903-15348023 1.0000 120 chr2L:2374045-2374165 1.0000 120 chrX:5329456-5329576 1.0000 120 chrX:19521869-19521989 1.0000 120 chr3R:5861313-5861433 1.0000 120 chr3L:8763285-8763405 1.0000 120 chrX:7323813-7323933 1.0000 120 chrX:12547743-12547863 1.0000 120 chr2R:19127944-19128064 1.0000 120 chr2L:12542093-12542213 1.0000 120 chrX:5970465-5970585 1.0000 120 chr2R:13008295-13008415 1.0000 120 chrX:11081349-11081469 1.0000 120 chr2R:20327016-20327136 1.0000 120 chr3R:18669855-18669975 1.0000 120 chr3R:5660195-5660315 1.0000 120 chr3R:23722089-23722209 1.0000 120 chr2L:15039389-15039509 1.0000 120 chr3L:17310612-17310732 1.0000 120 chr3L:13845401-13845521 1.0000 120 chrX:10326036-10326156 1.0000 120 chr3L:18109624-18109744 1.0000 120 chr3R:8349431-8349551 1.0000 120 chr2L:1158243-1158363 1.0000 120 chr2L:10964621-10964741 1.0000 120 chrX:15081184-15081304 1.0000 120 chr2R:7636659-7636779 1.0000 120 chrX:14169181-14169301 1.0000 120 chr3L:627868-627988 1.0000 120 chr2R:17698409-17698529 1.0000 120 chr3L:1035105-1035225 1.0000 120 chrX:11925362-11925482 1.0000 120 chr3R:28676994-28677114 1.0000 120 chr2R:18850647-18850767 1.0000 120 chr2L:15061484-15061604 1.0000 120 chr3R:22628062-22628182 1.0000 120 chr3R:4775425-4775545 1.0000 120 chr3L:6752911-6753031 1.0000 120 chr3R:15547934-15548054 1.0000 120 chr3R:4812120-4812240 1.0000 120 chr2L:18484760-18484880 1.0000 120 chr3L:3786941-3787061 1.0000 120 chr3R:15351114-15351234 1.0000 120 chr2R:18994122-18994242 1.0000 120 chr3L:10866743-10866863 1.0000 120 chr2L:2730013-2730133 1.0000 120 chr3R:26014381-26014501 1.0000 120 chr2R:9109719-9109839 1.0000 120 chr2L:13905421-13905541 1.0000 120 chr2R:22373558-22373678 1.0000 120 chr3R:12443328-12443448 1.0000 120 chrX:17175895-17176015 1.0000 120 chr3R:12630481-12630601 1.0000 120 chr2L:8894368-8894488 1.0000 120 chr2L:1207589-1207709 1.0000 120 chr3R:28599617-28599737 1.0000 120 chr2R:16800188-16800308 1.0000 120 chr2R:18774909-18775029 1.0000 120 chr3R:16355553-16355673 1.0000 120 chrX:13253176-13253296 1.0000 120 chr2R:5122273-5122393 1.0000 120 chrX:3019703-3019823 1.0000 120 chrX:1270740-1270860 1.0000 120 chr3L:22471718-22471838 1.0000 120 chr3L:13411146-13411266 1.0000 120 chrX:19166344-19166464 1.0000 120 chr3L:14031262-14031382 1.0000 120 chr3L:6743174-6743294 1.0000 120 chr3R:15250638-15250758 1.0000 120 chr2R:20319617-20319737 1.0000 120 chr3R:18366432-18366552 1.0000 120 chr2R:12174543-12174663 1.0000 120 chr2R:16202905-16203025 1.0000 120 chrX:14679335-14679455 1.0000 120 chr3L:3770942-3771062 1.0000 120 chr3R:29068919-29069039 1.0000 120 chrX:17170548-17170668 1.0000 120 chr3R:18168519-18168639 1.0000 120 chrX:15739026-15739146 1.0000 120 chrX:5336874-5336994 1.0000 120 chr3L:5554497-5554617 1.0000 120 chr3L:17791630-17791750 1.0000 120 chrX:6375787-6375907 1.0000 120 chr3L:7861181-7861301 1.0000 120 chr2R:14645090-14645210 1.0000 120 chrX:8574882-8575002 1.0000 120 chr3R:23028641-23028761 1.0000 120 chr2L:7957050-7957170 1.0000 120 chr2R:15381229-15381349 1.0000 120 chr2L:11199197-11199317 1.0000 120 chr3R:10520641-10520761 1.0000 120 chr3L:5152485-5152605 1.0000 120 chr2L:11091295-11091415 1.0000 120 chrX:13757043-13757163 1.0000 120 chr3R:27937942-27938062 1.0000 120 chr3L:27267146-27267266 1.0000 120 chr3L:15999731-15999851 1.0000 120 chrX:1880276-1880396 1.0000 120 chr3R:21373541-21373661 1.0000 120 chr3L:16202773-16202893 1.0000 120 chrX:8542087-8542207 1.0000 120 chr2R:19292165-19292285 1.0000 120 chr2L:6956890-6957010 1.0000 120 chr2R:13261763-13261883 1.0000 120 chr3L:13929266-13929386 1.0000 120 chr3L:8689840-8689960 1.0000 120 chr2L:10468581-10468701 1.0000 120 chr3L:16582843-16582963 1.0000 120 chr3L:10899347-10899467 1.0000 120 chr2L:16703811-16703931 1.0000 120 chr3L:11074592-11074712 1.0000 120 chrX:18635404-18635524 1.0000 120 chr2R:12468465-12468585 1.0000 120 chr3L:19834286-19834406 1.0000 120 chr2R:13429231-13429351 1.0000 120 chr3L:6264558-6264678 1.0000 120 chr3L:16386024-16386144 1.0000 120 chrX:1380439-1380559 1.0000 120 chr3R:10411899-10412019 1.0000 120 chr2R:8751581-8751701 1.0000 120 chr3R:26121182-26121302 1.0000 120 chrX:7901738-7901858 1.0000 120 chr3R:16241653-16241773 1.0000 120 chr2L:20757960-20758080 1.0000 120 chrX:16834340-16834460 1.0000 120 chr2R:18883660-18883780 1.0000 120 chr2L:8602753-8602873 1.0000 120 chr2L:7395895-7396015 1.0000 120 chr2R:21709651-21709771 1.0000 120 chrX:9584858-9584978 1.0000 120 chr2R:12772845-12772965 1.0000 120 chr3R:26052466-26052586 1.0000 120 chr3L:13923451-13923571 1.0000 120 chr3L:6189148-6189268 1.0000 120 chr3R:16573816-16573936 1.0000 120 chr2L:15629934-15630054 1.0000 120 chr2R:25085528-25085648 1.0000 120 chr2L:9699296-9699416 1.0000 120 chr3L:20194892-20195012 1.0000 120 chr2R:9132322-9132442 1.0000 120 chr3R:26106010-26106130 1.0000 120 chrX:12470656-12470776 1.0000 120 chrX:12583340-12583460 1.0000 120 chr2R:17478592-17478712 1.0000 120 chr3R:5686497-5686617 1.0000 120 chr2R:21535575-21535695 1.0000 120 chr3L:15563044-15563164 1.0000 120 chr2R:18326599-18326719 1.0000 120 chr3R:12016991-12017111 1.0000 120 chr2L:8982661-8982781 1.0000 120 chr3R:9370545-9370665 1.0000 120 chr2L:5326955-5327075 1.0000 120 chr2L:7494434-7494554 1.0000 120 chr3R:24010940-24011060 1.0000 120 chrX:14602727-14602847 1.0000 120 chr2R:24657154-24657274 1.0000 120 chrX:2136483-2136603 1.0000 120 chr2L:16647897-16648017 1.0000 120 chr3R:23921257-23921377 1.0000 120 chr2R:11197549-11197669 1.0000 120 chrX:2536273-2536393 1.0000 120 chrX:3968804-3968924 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9817/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9817.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.339 C 0.161 G 0.162 T 0.339 Background letter frequencies (from file dataset with add-one prior applied): A 0.339 C 0.161 G 0.162 T 0.339 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGYGGCGC MEME-1 width = 8 sites = 32 llr = 294 E-value = 1.6e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 31:1::31 pos.-specific C :16:19:8 probability G 78:99171 matrix T 1:4::::: bits 2.6 2.4 2.1 ** 1.8 *** * Relative 1.6 * *** * Entropy 1.3 * *** * (13.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGCGC consensus A T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21535575-21535695 28 1.45e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chrX:18635404-18635524 91 1.45e-06 TTCTCTCCTA GGTGGCGC TTTATTACTA chr2R:16800188-16800308 103 1.45e-06 ATTTCGTATA GGTGGCGC CACTTAAACT chr3L:8748978-8749098 47 1.45e-06 CTCACACATA GGTGGCGC ATTCTGCACA chr2L:17784772-17784892 28 1.45e-06 ATGACACATA GGTGGCGC TGAAGCCAAT chr2R:21709651-21709771 9 2.42e-06 TTTCTTCC GGCGGCAC AGTGAACGCT chr3L:8763285-8763405 21 2.42e-06 CGCTTTGATC GGCGGCAC ATAATACAAC chr2L:9779310-9779430 90 3.39e-06 TAATTGTTCG AGCGGCGC CAAGCTGGCG chr3L:22276810-22276930 78 4.33e-06 ATATTGTGCA GGCGGCGG ACGGAACTGC chr3L:10899347-10899467 31 9.36e-06 CCTTTGTTGT AGTGGCGC CCTCTTTTGT chr2L:2730013-2730133 6 9.36e-06 GATAC AGTGGCGC GTGTATCTAT chrX:15594624-15594744 65 1.13e-05 TACCCGCCTA GCTGGCGC TTTTGTGCTA chr2L:9699296-9699416 73 1.53e-05 GCGTGAACCG TGCGGCGC AATCATGAGT chr2R:20319617-20319737 94 1.53e-05 TGGGAGTGGG GGTGGCGG TGGGCGCACG chr3R:18669855-18669975 28 2.61e-05 GAACATCAAA GGCGGGAC ATTTAAAAGA chr3L:9614094-9614214 83 2.61e-05 ACACTTTTGG GGCGCCAC TAAGGTAAAA chrX:17820344-17820464 24 2.61e-05 CGTGTGCACT GGCGCCAC CTAGGTATGC chr3R:27937942-27938062 101 3.00e-05 CTAAATCATA AGCGCCGC GGGGTGTTCT chrX:7162646-7162766 59 3.78e-05 CCACCTGTTG GCCGGGGC AGTTTCAGCC chr2R:16202905-16203025 104 3.98e-05 GCTAAAAGTT GGCAGCAC GGCCAGGGG chrX:15081184-15081304 64 4.60e-05 GCGATCGCTA GATGGCGC CTTGAAATCT chr3R:23722089-23722209 79 4.60e-05 ATAGTCAACA GATGGCGC TCTAAAATCT chr3L:3770942-3771062 19 4.90e-05 CTTAATTTAT AGCAGCGC TTTTCATGAT chr2L:18150741-18150861 17 4.90e-05 CGGCTGGGAG AGCAGCGC AAGTACAGTG chr3L:6264558-6264678 43 5.15e-05 TTCAAGATTT ACTGGCGC CATCTAGGGC chrX:1380439-1380559 47 5.65e-05 TAAACTCTGG GCCAGCGC TGCACAACAC chr3L:6743174-6743294 38 5.65e-05 TCACTAGAGA TGCGGCAC TCGGGGCAAA chr2L:1158243-1158363 8 5.65e-05 TTATGTG GGTGGCAG AATACTAAAA chr3R:23921257-23921377 103 6.88e-05 GCAACAGCAA GGCGGCAA GAAGGGGAAA chr2R:7636659-7636779 65 6.88e-05 GGGCGATTTG GGCGGCAA AACGCCTGTA chr3L:19834286-19834406 55 7.39e-05 GCTGCGATCC AGTGGGGC TATCGATAGC chr2R:10400128-10400248 64 1.11e-04 TTTCATGGAC AGCGGCTC AATAGGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21535575-21535695 1.4e-06 27_[+1]_85 chrX:18635404-18635524 1.4e-06 90_[+1]_22 chr2R:16800188-16800308 1.4e-06 102_[+1]_10 chr3L:8748978-8749098 1.4e-06 46_[+1]_66 chr2L:17784772-17784892 1.4e-06 27_[+1]_85 chr2R:21709651-21709771 2.4e-06 8_[+1]_104 chr3L:8763285-8763405 2.4e-06 20_[+1]_92 chr2L:9779310-9779430 3.4e-06 89_[+1]_23 chr3L:22276810-22276930 4.3e-06 77_[+1]_35 chr3L:10899347-10899467 9.4e-06 30_[+1]_82 chr2L:2730013-2730133 9.4e-06 5_[+1]_107 chrX:15594624-15594744 1.1e-05 64_[+1]_48 chr2L:9699296-9699416 1.5e-05 72_[+1]_40 chr2R:20319617-20319737 1.5e-05 93_[+1]_19 chr3R:18669855-18669975 2.6e-05 27_[+1]_85 chr3L:9614094-9614214 2.6e-05 82_[+1]_30 chrX:17820344-17820464 2.6e-05 23_[+1]_89 chr3R:27937942-27938062 3e-05 100_[+1]_12 chrX:7162646-7162766 3.8e-05 58_[+1]_54 chr2R:16202905-16203025 4e-05 103_[+1]_9 chrX:15081184-15081304 4.6e-05 63_[+1]_49 chr3R:23722089-23722209 4.6e-05 78_[+1]_34 chr3L:3770942-3771062 4.9e-05 18_[+1]_94 chr2L:18150741-18150861 4.9e-05 16_[+1]_96 chr3L:6264558-6264678 5.1e-05 42_[+1]_70 chrX:1380439-1380559 5.7e-05 46_[+1]_66 chr3L:6743174-6743294 5.7e-05 37_[+1]_75 chr2L:1158243-1158363 5.7e-05 7_[+1]_105 chr3R:23921257-23921377 6.9e-05 102_[+1]_10 chr2R:7636659-7636779 6.9e-05 64_[+1]_48 chr3L:19834286-19834406 7.4e-05 54_[+1]_58 chr2R:10400128-10400248 0.00011 63_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYGGCGC width=8 seqs=32 chr2R:21535575-21535695 ( 28) GGTGGCGC 1 chrX:18635404-18635524 ( 91) GGTGGCGC 1 chr2R:16800188-16800308 ( 103) GGTGGCGC 1 chr3L:8748978-8749098 ( 47) GGTGGCGC 1 chr2L:17784772-17784892 ( 28) GGTGGCGC 1 chr2R:21709651-21709771 ( 9) GGCGGCAC 1 chr3L:8763285-8763405 ( 21) GGCGGCAC 1 chr2L:9779310-9779430 ( 90) AGCGGCGC 1 chr3L:22276810-22276930 ( 78) GGCGGCGG 1 chr3L:10899347-10899467 ( 31) AGTGGCGC 1 chr2L:2730013-2730133 ( 6) AGTGGCGC 1 chrX:15594624-15594744 ( 65) GCTGGCGC 1 chr2L:9699296-9699416 ( 73) TGCGGCGC 1 chr2R:20319617-20319737 ( 94) GGTGGCGG 1 chr3R:18669855-18669975 ( 28) GGCGGGAC 1 chr3L:9614094-9614214 ( 83) GGCGCCAC 1 chrX:17820344-17820464 ( 24) GGCGCCAC 1 chr3R:27937942-27938062 ( 101) AGCGCCGC 1 chrX:7162646-7162766 ( 59) GCCGGGGC 1 chr2R:16202905-16203025 ( 104) GGCAGCAC 1 chrX:15081184-15081304 ( 64) GATGGCGC 1 chr3R:23722089-23722209 ( 79) GATGGCGC 1 chr3L:3770942-3771062 ( 19) AGCAGCGC 1 chr2L:18150741-18150861 ( 17) AGCAGCGC 1 chr3L:6264558-6264678 ( 43) ACTGGCGC 1 chrX:1380439-1380559 ( 47) GCCAGCGC 1 chr3L:6743174-6743294 ( 38) TGCGGCAC 1 chr2L:1158243-1158363 ( 8) GGTGGCAG 1 chr3R:23921257-23921377 ( 103) GGCGGCAA 1 chr2R:7636659-7636779 ( 65) GGCGGCAA 1 chr3L:19834286-19834406 ( 55) AGTGGGGC 1 chr2R:10400128-10400248 ( 64) AGCGGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.6e-006 -27 -1164 202 -244 -244 -37 233 -1164 -1164 180 -1164 37 -144 -1164 244 -1164 -1164 -78 249 -1164 -1164 249 -78 -1164 -12 -1164 202 -343 -244 239 -78 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.6e-006 0.281250 0.000000 0.656250 0.062500 0.062500 0.125000 0.812500 0.000000 0.000000 0.562500 0.000000 0.437500 0.125000 0.000000 0.875000 0.000000 0.000000 0.093750 0.906250 0.000000 0.000000 0.906250 0.093750 0.000000 0.312500 0.000000 0.656250 0.031250 0.062500 0.843750 0.093750 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[CT]GGC[GA]C -------------------------------------------------------------------------------- Time 7.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-2 width = 8 sites = 20 llr = 193 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:2:a:: pos.-specific C 36:8a14a probability G 7:a:::11 matrix T :2::::6: bits 2.6 * * 2.4 * * * 2.1 * * * 1.8 * * * * Relative 1.6 * *** * Entropy 1.3 * **** * (13.9 bits) 1.1 * **** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCATC consensus CA A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7901738-7901858 60 9.62e-07 AATATCGTTT GCGCCACC ATCCCTGGTC chr2R:16800188-16800308 32 9.62e-07 AACTGAACTA GCGCCACC TGAGACTGCA chr2R:25085528-25085648 45 2.99e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chrX:15594624-15594744 8 2.99e-06 TTGAAAT GCGCCATC TCTTTAACTG chr3R:23921257-23921377 75 5.96e-06 TCTGGTTTAT CCGCCATC TCACGCACAA chrX:11081349-11081469 88 7.99e-06 CCTTAATCAT GAGCCACC CAACTTCCGC chrX:3968804-3968924 59 1.43e-05 CGGCAACGCT GAGCCATC AGTGCCAAAA chr2L:19416053-19416173 80 1.43e-05 TCTTCCATAT GTGCCACC ATATCATTGC chrX:17820344-17820464 68 1.43e-05 CGAACATATA GAGCCATC TACTTCACGA chr3R:16355553-16355673 84 1.95e-05 CTACGCCCAT GTGCCATC TCGTATGGCG chrX:15653653-15653773 45 2.15e-05 AACGGCAAGA GCGACACC TATCGTCAGT chr3L:13411146-13411266 58 2.63e-05 AACGTTTGCA GCGACATC TAGTGGTGGT chr3L:13845401-13845521 22 2.92e-05 TGACACCAAT GCGCCCTC TAGCGAGCTA chr3L:6743174-6743294 14 3.55e-05 GTCAACACGC CAGCCATC GATGGTTCAC chr3L:13929266-13929386 112 4.07e-05 CAGGTGAGTT CTGCCATC T chr2R:16202905-16203025 5 4.07e-05 AATA CCGCCAGC GATCAGTGTT chr2L:15039389-15039509 18 4.07e-05 CAAATGCCCA CTGCCATC CAAATCCAAC chr2L:17784772-17784892 105 4.17e-05 TATACAGATG GCGCCACG AATTTGAT chr3L:4025860-4025980 101 4.37e-05 TTTATTTATT CCGACACC TGTCGCACAA chr3R:26717512-26717632 101 7.69e-05 TTTGAGTACT GAGACATC CATTGGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7901738-7901858 9.6e-07 59_[+2]_53 chr2R:16800188-16800308 9.6e-07 31_[+2]_81 chr2R:25085528-25085648 3e-06 44_[+2]_68 chrX:15594624-15594744 3e-06 7_[+2]_105 chr3R:23921257-23921377 6e-06 74_[+2]_38 chrX:11081349-11081469 8e-06 87_[+2]_25 chrX:3968804-3968924 1.4e-05 58_[+2]_54 chr2L:19416053-19416173 1.4e-05 79_[+2]_33 chrX:17820344-17820464 1.4e-05 67_[+2]_45 chr3R:16355553-16355673 2e-05 83_[+2]_29 chrX:15653653-15653773 2.2e-05 44_[+2]_68 chr3L:13411146-13411266 2.6e-05 57_[+2]_55 chr3L:13845401-13845521 2.9e-05 21_[+2]_91 chr3L:6743174-6743294 3.5e-05 13_[+2]_99 chr3L:13929266-13929386 4.1e-05 111_[+2]_1 chr2R:16202905-16203025 4.1e-05 4_[+2]_108 chr2L:15039389-15039509 4.1e-05 17_[+2]_95 chr2L:17784772-17784892 4.2e-05 104_[+2]_8 chr3L:4025860-4025980 4.4e-05 100_[+2]_12 chr3R:26717512-26717632 7.7e-05 100_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=20 chrX:7901738-7901858 ( 60) GCGCCACC 1 chr2R:16800188-16800308 ( 32) GCGCCACC 1 chr2R:25085528-25085648 ( 45) GCGCCATC 1 chrX:15594624-15594744 ( 8) GCGCCATC 1 chr3R:23921257-23921377 ( 75) CCGCCATC 1 chrX:11081349-11081469 ( 88) GAGCCACC 1 chrX:3968804-3968924 ( 59) GAGCCATC 1 chr2L:19416053-19416173 ( 80) GTGCCACC 1 chrX:17820344-17820464 ( 68) GAGCCATC 1 chr3R:16355553-16355673 ( 84) GTGCCATC 1 chrX:15653653-15653773 ( 45) GCGACACC 1 chr3L:13411146-13411266 ( 58) GCGACATC 1 chr3L:13845401-13845521 ( 22) GCGCCCTC 1 chr3L:6743174-6743294 ( 14) CAGCCATC 1 chr3L:13929266-13929386 ( 112) CTGCCATC 1 chr2R:16202905-16203025 ( 5) CCGCCAGC 1 chr2L:15039389-15039509 ( 18) CTGCCATC 1 chr2L:17784772-17784892 ( 105) GCGCCACG 1 chr3L:4025860-4025980 ( 101) CCGACACC 1 chr3R:26717512-26717632 ( 101) GAGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 3.2e+001 -1097 90 212 -1097 -44 177 -1097 -76 -1097 -1097 263 -1097 -76 231 -1097 -1097 -1097 263 -1097 -1097 149 -169 -1097 -1097 -1097 112 -169 82 -1097 256 -169 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.2e+001 0.000000 0.300000 0.700000 0.000000 0.250000 0.550000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 0.000000 0.350000 0.050000 0.600000 0.000000 0.950000 0.050000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CAT]G[CA]CA[TC]C -------------------------------------------------------------------------------- Time 13.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMCWGYG MEME-3 width = 8 sites = 18 llr = 178 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::4:4::: pos.-specific C :a4a::6: probability G a:1:291a matrix T ::1:413: bits 2.6 ** * * 2.4 ** * * 2.1 ** * * * 1.8 ** * * * Relative 1.6 ** * * * Entropy 1.3 ** * * * (14.3 bits) 1.1 ** * *** 0.8 ** * *** 0.5 **** *** 0.3 ******** 0.0 -------- Multilevel GCACAGCG consensus C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2730013-2730133 73 9.68e-07 TAGTCGAGCC GCCCAGCG TTGTACTTAG chrX:7901738-7901858 100 1.94e-06 CGAAAAGCCA GCCCTGCG ACGTTGCCAC chr2R:14645090-14645210 88 1.94e-06 AGCTTTCTTC GCCCTGCG TAAGACAGCT chr3L:5152485-5152605 102 6.48e-06 ACATTTGACA GCACTGCG ACTTCCGCCA chr3R:23028641-23028761 11 6.48e-06 CACGTCGAAT GCACTGCG AGAAAAGTAG chr3R:21373541-21373661 22 7.45e-06 TAATGAATTT GCACGGCG TTGCCACACA chr3R:31636678-31636798 94 9.49e-06 ATCCGATTTT GCCCAGTG TAATCGCTGA chr3L:16582843-16582963 109 1.15e-05 AATATTCCCA GCCCTGTG GTAA chr3R:23921257-23921377 29 2.08e-05 CAGGGTTTAT GCGCTGCG CGTGTAATGA chr2L:9699296-9699416 58 2.08e-05 TAGGCAGCTC GCTCAGCG TGAACCGTGC chr3R:27937942-27938062 13 2.08e-05 GCACCGTAAT GCACAGTG AGGCGAAGTG chr2L:7957050-7957170 12 2.08e-05 CCCCAGCACT GCACAGTG GTTAAAGGTG chr2L:18966887-18967007 6 2.08e-05 ATTAA GCACAGTG TTACTTTGGA chrX:1380439-1380559 73 3.06e-05 ACTGCCACTG GCTCGGCG TTGCCACCTC chr3R:17526158-17526278 24 3.06e-05 AATCCAGCCT GCACGGTG AAAGAAATGG chr2L:6956890-6957010 92 3.51e-05 ATATCGATAG GCCCATCG ATGACCATCA chrX:1270740-1270860 21 3.51e-05 AAAAACCAAA GCCCATCG ATGATTCTTA chr3R:26280485-26280605 16 4.21e-05 TCAGTGGCAT GCACTGGG GAAAAAGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2730013-2730133 9.7e-07 72_[+3]_40 chrX:7901738-7901858 1.9e-06 99_[+3]_13 chr2R:14645090-14645210 1.9e-06 87_[+3]_25 chr3L:5152485-5152605 6.5e-06 101_[+3]_11 chr3R:23028641-23028761 6.5e-06 10_[+3]_102 chr3R:21373541-21373661 7.5e-06 21_[+3]_91 chr3R:31636678-31636798 9.5e-06 93_[+3]_19 chr3L:16582843-16582963 1.2e-05 108_[+3]_4 chr3R:23921257-23921377 2.1e-05 28_[+3]_84 chr2L:9699296-9699416 2.1e-05 57_[+3]_55 chr3R:27937942-27938062 2.1e-05 12_[+3]_100 chr2L:7957050-7957170 2.1e-05 11_[+3]_101 chr2L:18966887-18967007 2.1e-05 5_[+3]_107 chrX:1380439-1380559 3.1e-05 72_[+3]_40 chr3R:17526158-17526278 3.1e-05 23_[+3]_89 chr2L:6956890-6957010 3.5e-05 91_[+3]_21 chrX:1270740-1270860 3.5e-05 20_[+3]_92 chr3R:26280485-26280605 4.2e-05 15_[+3]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMCWGYG width=8 seqs=18 chr2L:2730013-2730133 ( 73) GCCCAGCG 1 chrX:7901738-7901858 ( 100) GCCCTGCG 1 chr2R:14645090-14645210 ( 88) GCCCTGCG 1 chr3L:5152485-5152605 ( 102) GCACTGCG 1 chr3R:23028641-23028761 ( 11) GCACTGCG 1 chr3R:21373541-21373661 ( 22) GCACGGCG 1 chr3R:31636678-31636798 ( 94) GCCCAGTG 1 chr3L:16582843-16582963 ( 109) GCCCTGTG 1 chr3R:23921257-23921377 ( 29) GCGCTGCG 1 chr2L:9699296-9699416 ( 58) GCTCAGCG 1 chr3R:27937942-27938062 ( 13) GCACAGTG 1 chr2L:7957050-7957170 ( 12) GCACAGTG 1 chr2L:18966887-18967007 ( 6) GCACAGTG 1 chrX:1380439-1380559 ( 73) GCTCGGCG 1 chr3R:17526158-17526278 ( 24) GCACGGTG 1 chr2L:6956890-6957010 ( 92) GCCCATCG 1 chrX:1270740-1270860 ( 21) GCCCATCG 1 chr3R:26280485-26280605 ( 16) GCACTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 3.1e+001 -1081 -1081 263 -1081 -1081 263 -1081 -1081 39 127 -154 -161 -1081 263 -1081 -1081 39 -1081 5 20 -1081 -1081 246 -161 -1081 192 -154 -2 -1081 -1081 263 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.1e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.388889 0.055556 0.111111 0.000000 1.000000 0.000000 0.000000 0.444444 0.000000 0.166667 0.388889 0.000000 0.000000 0.888889 0.111111 0.000000 0.611111 0.055556 0.333333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCWGYG MEME-3 regular expression -------------------------------------------------------------------------------- GC[AC]C[AT]G[CT]G -------------------------------------------------------------------------------- Time 20.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGTCGC MEME-4 width = 8 sites = 8 llr = 89 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6:::::: pos.-specific C :3:3:a:a probability G a1:8::a: matrix T ::a:a::: bits 2.6 * *** 2.4 * *** 2.1 * *** 1.8 * * *** Relative 1.6 * ****** Entropy 1.3 * ****** (16.1 bits) 1.1 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GATGTCGC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:12016991-12017111 108 4.29e-06 TATAAAGTCG GATGTCGC ACAAA chr2R:21535575-21535695 94 4.29e-06 ACAAACGGTA GATGTCGC TTCAAAATTT chr2R:16800188-16800308 65 4.29e-06 TCAAAAACTA GATGTCGC TGAGAAAAAA chrX:17175895-17176015 92 4.29e-06 TAGGTGTCTA GATGTCGC TGTTAACTTG chr3R:19491175-19491295 51 4.29e-06 AATGCCTATA GATGTCGC TAAAAGCGAT chrX:15653653-15653773 102 8.38e-06 AACAGCCACA GGTGTCGC TACTGAGCAA chr3L:627868-627988 108 1.47e-05 CTTAGACACC GCTCTCGC ACGCC chrX:19521869-19521989 45 1.47e-05 GTATTTGTAT GCTCTCGC TTGCATCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:12016991-12017111 4.3e-06 107_[+4]_5 chr2R:21535575-21535695 4.3e-06 93_[+4]_19 chr2R:16800188-16800308 4.3e-06 64_[+4]_48 chrX:17175895-17176015 4.3e-06 91_[+4]_21 chr3R:19491175-19491295 4.3e-06 50_[+4]_62 chrX:15653653-15653773 8.4e-06 101_[+4]_11 chr3L:627868-627988 1.5e-05 107_[+4]_5 chrX:19521869-19521989 1.5e-05 44_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGTCGC width=8 seqs=8 chr3R:12016991-12017111 ( 108) GATGTCGC 1 chr2R:21535575-21535695 ( 94) GATGTCGC 1 chr2R:16800188-16800308 ( 65) GATGTCGC 1 chrX:17175895-17176015 ( 92) GATGTCGC 1 chr3R:19491175-19491295 ( 51) GATGTCGC 1 chrX:15653653-15653773 ( 102) GGTGTCGC 1 chr3L:627868-627988 ( 108) GCTCTCGC 1 chrX:19521869-19521989 ( 45) GCTCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.4e+004 -965 -965 263 -965 88 63 -37 -965 -965 -965 -965 156 -965 63 221 -965 -965 -965 -965 156 -965 263 -965 -965 -965 -965 263 -965 -965 263 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.625000 0.250000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGTCGC MEME-4 regular expression -------------------------------------------------------------------------------- G[AC]T[GC]TCGC -------------------------------------------------------------------------------- Time 26.32 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCCWG MEME-5 width = 8 sites = 4 llr = 48 E-value = 4.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::5: pos.-specific C a3aa8a:: probability G :8::3::a matrix T ::::::5: bits 2.6 * ** * * 2.4 * ** * * 2.1 * ** * * 1.8 ****** * Relative 1.6 ****** * Entropy 1.3 ****** * (17.4 bits) 1.1 ****** * 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCCCAG consensus C G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9699296-9699416 15 1.92e-06 CTCGCGGATG CGCCCCAG CACGCAGGTG chrX:14679335-14679455 110 1.92e-06 AGATTGTCTA CGCCCCTG CTT chr3R:4812120-4812240 69 5.77e-06 CCGTTACCTT CGCCGCAG ACCGCATTTG chrX:5970465-5970585 44 5.77e-06 TGTACTAAAA CCCCCCTG ACTTAAACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9699296-9699416 1.9e-06 14_[+5]_98 chrX:14679335-14679455 1.9e-06 109_[+5]_3 chr3R:4812120-4812240 5.8e-06 68_[+5]_44 chrX:5970465-5970585 5.8e-06 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCCWG width=8 seqs=4 chr2L:9699296-9699416 ( 15) CGCCCCAG 1 chrX:14679335-14679455 ( 110) CGCCCCTG 1 chr3R:4812120-4812240 ( 69) CGCCGCAG 1 chrX:5970465-5970585 ( 44) CCCCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.3e+004 -865 263 -865 -865 -865 63 221 -865 -865 263 -865 -865 -865 263 -865 -865 -865 221 63 -865 -865 263 -865 -865 56 -865 -865 56 -865 -865 263 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCWG MEME-5 regular expression -------------------------------------------------------------------------------- C[GC]CC[CG]C[AT]G -------------------------------------------------------------------------------- Time 32.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10601766-10601886 6.95e-01 120 chrX:7706444-7706564 4.88e-01 120 chr3L:13356178-13356298 1.07e-01 120 chr3L:16310120-16310240 2.14e-01 120 chrX:11391643-11391763 9.83e-01 120 chr3L:22276810-22276930 1.38e-03 77_[+1(4.33e-06)]_35 chr3L:16146681-16146801 9.79e-01 120 chr3R:23969567-23969687 1.00e+00 120 chr3R:22121353-22121473 9.12e-01 120 chr2L:17784772-17784892 1.03e-07 27_[+1(1.45e-06)]_15_[+1(3.78e-05)]_\ 10_[+3(4.52e-05)]_27_[+1(2.61e-05)]_9 chrX:3109040-3109160 3.92e-01 120 chr3L:3772749-3772869 9.76e-01 120 chr3L:7528425-7528545 9.98e-01 120 chr2R:16673018-16673138 6.91e-01 120 chr3L:11785435-11785555 9.85e-01 120 chrX:15653653-15653773 1.12e-04 44_[+2(2.15e-05)]_49_[+4(8.38e-06)]_\ 11 chrX:17820344-17820464 1.34e-05 24_[+2(9.62e-07)]_35_[+2(1.43e-05)]_\ 45 chr2R:10439082-10439202 9.97e-01 120 chr3R:18508425-18508545 1.00e+00 120 chrX:19964319-19964439 2.71e-01 120 chr3L:630194-630314 3.60e-01 120 chr3R:8784942-8785062 5.79e-01 120 chr3R:21852705-21852825 8.14e-01 120 chr3R:24318434-24318554 9.62e-01 120 chr2L:2348638-2348758 9.07e-01 120 chr2R:9756274-9756394 9.35e-01 120 chr2L:937037-937157 1.66e-01 120 chr3R:8930280-8930400 6.67e-01 120 chrX:15594624-15594744 2.62e-06 7_[+2(2.99e-06)]_49_[+1(1.13e-05)]_\ 48 chr3L:4254366-4254486 8.06e-01 120 chr2L:9494866-9494986 8.46e-01 120 chr3R:23820369-23820489 4.83e-01 120 chr2L:9564632-9564752 6.70e-01 120 chr2L:19416053-19416173 1.09e-02 79_[+2(1.43e-05)]_33 chrX:11885507-11885627 7.21e-01 120 chr3R:15119864-15119984 7.88e-01 120 chr3L:8748978-8749098 4.79e-05 46_[+1(1.45e-06)]_66 chrX:9004487-9004607 6.52e-01 120 chrX:17856841-17856961 1.02e-01 120 chr3L:19216553-19216673 9.97e-01 120 chr3R:14308912-14309032 7.56e-01 120 chrX:18094851-18094971 4.41e-01 120 chr3L:6086140-6086260 9.29e-01 120 chr3R:26717512-26717632 1.07e-01 100_[+2(7.69e-05)]_12 chrX:15532166-15532286 9.79e-01 120 chrX:17696797-17696917 9.91e-01 120 chr3L:4242556-4242676 8.93e-02 120 chr2R:20257428-20257548 9.91e-01 120 chrX:10600687-10600807 6.79e-01 120 chr3L:20827375-20827495 8.26e-01 120 chr3R:7591350-7591470 9.49e-01 120 chr3L:5359476-5359596 5.65e-01 120 chrX:11379295-11379415 5.25e-01 120 chr2R:10400128-10400248 2.55e-02 120 chr3R:26280485-26280605 5.33e-02 15_[+3(4.21e-05)]_97 chr2R:9742925-9743045 8.49e-01 120 chrX:8533652-8533772 7.20e-01 120 chr2L:21310229-21310349 2.63e-02 120 chrX:14234114-14234234 9.92e-01 120 chr3R:28118209-28118329 9.98e-01 120 chr3L:22277307-22277427 7.11e-01 120 chr3R:15292408-15292528 1.16e-01 120 chr3L:4025860-4025980 9.08e-03 100_[+2(4.37e-05)]_12 chrX:7104527-7104647 5.30e-01 120 chrX:10387790-10387910 1.30e-01 120 chrX:15120215-15120335 9.55e-01 120 chr3L:3382025-3382145 6.62e-01 120 chr3L:6943994-6944114 4.28e-01 120 chrX:16587276-16587396 9.43e-01 120 chr2R:8650572-8650692 1.63e-01 120 chr3R:19491175-19491295 1.08e-02 50_[+4(4.29e-06)]_62 chr3L:751890-752010 1.26e-01 120 chr3L:1151787-1151907 3.79e-01 120 chr3L:7510860-7510980 9.67e-01 120 chrX:18837130-18837250 7.22e-01 120 chrX:3714130-3714250 8.99e-01 120 chr3L:2845322-2845442 9.76e-01 120 chr3R:8354552-8354672 9.64e-01 120 chr3R:31636678-31636798 3.74e-02 93_[+3(9.49e-06)]_19 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9.50e-01 120 chr3R:9370545-9370665 5.08e-01 120 chr2L:5326955-5327075 9.51e-01 120 chr2L:7494434-7494554 8.82e-01 120 chr3R:24010940-24011060 7.26e-01 120 chrX:14602727-14602847 1.54e-02 120 chr2R:24657154-24657274 2.70e-01 120 chrX:2136483-2136603 3.43e-03 3_[+5(7.70e-06)]_109 chr2L:16647897-16648017 9.99e-01 120 chr3R:23921257-23921377 5.96e-06 28_[+3(2.08e-05)]_38_[+2(5.96e-06)]_\ 20_[+1(6.88e-05)]_10 chr2R:11197549-11197669 5.67e-01 120 chrX:2536273-2536393 8.99e-01 120 chrX:3968804-3968924 1.30e-03 58_[+2(1.43e-05)]_54 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************