******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9797.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:22171-22291 1.0000 120 chrX:21605226-21605346 1.0000 120 chr3L:4277889-4278009 1.0000 120 chr2R:16957426-16957546 1.0000 120 chr3R:25235488-25235608 1.0000 120 chr2L:20926085-20926205 1.0000 120 chr3R:29491062-29491182 1.0000 120 chr2R:20870689-20870809 1.0000 120 chr3L:16782922-16783042 1.0000 120 chr3R:13958735-13958855 1.0000 120 chrX:16800648-16800768 1.0000 120 chr3R:9015039-9015159 1.0000 120 chr2R:8170209-8170329 1.0000 120 chr2R:14993765-14993885 1.0000 120 chr2L:13179181-13179301 1.0000 120 chr2L:12048887-12049007 1.0000 120 chr3L:18820954-18821074 1.0000 120 chr3L:4322166-4322286 1.0000 120 chr3R:15278584-15278704 1.0000 120 chr2L:13827718-13827838 1.0000 120 chr3R:9015239-9015359 1.0000 120 chr3L:21941776-21941896 1.0000 120 chr3L:4003394-4003514 1.0000 120 chr3R:5733379-5733499 1.0000 120 chr2L:10206902-10207022 1.0000 120 chr3R:4748989-4749109 1.0000 120 chrX:22482023-22482143 1.0000 120 chr3R:9551976-9552096 1.0000 120 chr2R:24775164-24775284 1.0000 120 chr3R:15268572-15268692 1.0000 120 chrX:19276823-19276943 1.0000 120 chr2R:9964994-9965114 1.0000 120 chr2R:17748016-17748136 1.0000 120 chr2L:9253053-9253173 1.0000 120 chr2L:8740624-8740744 1.0000 120 chrX:20393709-20393829 1.0000 120 chr3L:21635304-21635424 1.0000 120 chrX:16884434-16884554 1.0000 120 chr2L:292401-292521 1.0000 120 chr2L:15005638-15005758 1.0000 120 chrX:15788765-15788885 1.0000 120 chr3L:9972192-9972312 1.0000 120 chr3L:3169255-3169375 1.0000 120 chr2L:8040987-8041107 1.0000 120 chr2L:6127596-6127716 1.0000 120 chr3R:23924358-23924478 1.0000 120 chr3L:7238525-7238645 1.0000 120 chr3R:25023225-25023345 1.0000 120 chr3L:3472247-3472367 1.0000 120 chr3L:18745794-18745914 1.0000 120 chrX:15769598-15769718 1.0000 120 chr3L:212615-212735 1.0000 120 chr3R:24851531-24851651 1.0000 120 chr2R:11289749-11289869 1.0000 120 chr2L:16902142-16902262 1.0000 120 chr3L:4135951-4136071 1.0000 120 chr3L:21823385-21823505 1.0000 120 chr3R:12678954-12679074 1.0000 120 chr3L:16610356-16610476 1.0000 120 chr3R:29816408-29816528 1.0000 120 chrX:9247268-9247388 1.0000 120 chr3R:27695152-27695272 1.0000 120 chr3L:1331674-1331794 1.0000 120 chr2R:21616781-21616901 1.0000 120 chr3R:24357865-24357985 1.0000 120 chrX:927970-928090 1.0000 120 chr3L:16587104-16587224 1.0000 120 chr3L:11795538-11795658 1.0000 120 chr2L:20104595-20104715 1.0000 120 chr2L:6658471-6658591 1.0000 120 chr3R:10767717-10767837 1.0000 120 chr3R:27679091-27679211 1.0000 120 chr2R:20643763-20643883 1.0000 120 chrX:6674291-6674411 1.0000 120 chr2L:13790923-13791043 1.0000 120 chr3L:3042315-3042435 1.0000 120 chr3R:4484988-4485108 1.0000 120 chr2R:16001654-16001774 1.0000 120 chr2R:12431030-12431150 1.0000 120 chrX:9158463-9158583 1.0000 120 chr3L:12399257-12399377 1.0000 120 chr3R:24922423-24922543 1.0000 120 chr3L:5561520-5561640 1.0000 120 chr2L:10327916-10328036 1.0000 120 chr3R:27947970-27948090 1.0000 120 chr3R:19027274-19027394 1.0000 120 chr2L:7409725-7409845 1.0000 120 chr3L:6756471-6756591 1.0000 120 chr3L:19261385-19261505 1.0000 120 chr2R:7445682-7445802 1.0000 120 chr3L:15504752-15504872 1.0000 120 chr2L:10056799-10056919 1.0000 120 chr2R:12571970-12572090 1.0000 120 chr2L:20682320-20682440 1.0000 120 chr2R:24875793-24875913 1.0000 120 chr3R:17040106-17040226 1.0000 120 chrX:18379883-18380003 1.0000 120 chr3L:16121946-16122066 1.0000 120 chr2L:3452382-3452502 1.0000 120 chr3R:20635338-20635458 1.0000 120 chr2R:17865931-17866051 1.0000 120 chrX:12592198-12592318 1.0000 120 chr3R:16273828-16273948 1.0000 120 chrX:19701687-19701807 1.0000 120 chr3R:31617928-31618048 1.0000 120 chr3R:27272432-27272552 1.0000 120 chr2R:23809028-23809148 1.0000 120 chr2R:12636131-12636251 1.0000 120 chr3R:29933214-29933334 1.0000 120 chr2L:4968908-4969028 1.0000 120 chrX:22540343-22540463 1.0000 120 chrX:6267181-6267301 1.0000 120 chr2R:9822891-9823011 1.0000 120 chr2R:15682685-15682805 1.0000 120 chr3L:4103517-4103637 1.0000 120 chr3R:30177624-30177744 1.0000 120 chr3R:22468137-22468257 1.0000 120 chr2L:14334068-14334188 1.0000 120 chr3L:13997165-13997285 1.0000 120 chr3R:5219570-5219690 1.0000 120 chrX:17244981-17245101 1.0000 120 chr2L:4955449-4955569 1.0000 120 chr3R:12705068-12705188 1.0000 120 chrX:8142228-8142348 1.0000 120 chrX:2713921-2714041 1.0000 120 chrX:23082641-23082761 1.0000 120 chr3L:8514841-8514961 1.0000 120 chr2R:16320626-16320746 1.0000 120 chr2R:12138709-12138829 1.0000 120 chr2R:8625409-8625529 1.0000 120 chrX:18650410-18650530 1.0000 120 chr3L:4626682-4626802 1.0000 120 chr3R:9748055-9748175 1.0000 120 chr3L:11164919-11165039 1.0000 120 chr3R:20585746-20585866 1.0000 120 chr3R:13683178-13683298 1.0000 120 chr3R:12691449-12691569 1.0000 120 chrX:647227-647347 1.0000 120 chr2R:7447400-7447520 1.0000 120 chr3R:25065542-25065662 1.0000 120 chr2R:16138612-16138732 1.0000 120 chr3L:7369785-7369905 1.0000 120 chr2R:16783613-16783733 1.0000 120 chr2L:18820-18940 1.0000 120 chr3L:5779827-5779947 1.0000 120 chr2R:23752663-23752783 1.0000 120 chr2L:16738344-16738464 1.0000 120 chrX:11578982-11579102 1.0000 120 chr2R:16855355-16855475 1.0000 120 chr3R:23929316-23929436 1.0000 120 chr2R:22127467-22127587 1.0000 120 chrX:4548761-4548881 1.0000 120 chr2L:4967729-4967849 1.0000 120 chr3R:13271950-13272070 1.0000 120 chr2R:10897755-10897875 1.0000 120 chr2R:23811943-23812063 1.0000 120 chr3L:20129085-20129205 1.0000 120 chrX:6276666-6276786 1.0000 120 chrX:16553909-16554029 1.0000 120 chr2R:12184242-12184362 1.0000 120 chrX:13822523-13822643 1.0000 120 chr3R:12429241-12429361 1.0000 120 chr2R:23402254-23402374 1.0000 120 chrX:16943091-16943211 1.0000 120 chr2R:20287031-20287151 1.0000 120 chr3R:15223076-15223196 1.0000 120 chr2L:4818197-4818317 1.0000 120 chr3R:8723069-8723189 1.0000 120 chr3L:211389-211509 1.0000 120 chr3L:13389958-13390078 1.0000 120 chrX:805961-806081 1.0000 120 chrX:4551865-4551985 1.0000 120 chr3L:12267420-12267540 1.0000 120 chr3L:21529309-21529429 1.0000 120 chr3R:27681975-27682095 1.0000 120 chr2R:7440663-7440783 1.0000 120 chr2L:6476913-6477033 1.0000 120 chr3R:24717452-24717572 1.0000 120 chr3R:17546441-17546561 1.0000 120 chr2R:21719953-21720073 1.0000 120 chr3L:12205857-12205977 1.0000 120 chr2R:11293134-11293254 1.0000 120 chrX:21031924-21032044 1.0000 120 chrX:16803585-16803705 1.0000 120 chrX:16940758-16940878 1.0000 120 chr2L:7063940-7064060 1.0000 120 chr2L:6000178-6000298 1.0000 120 chr3R:15328225-15328345 1.0000 120 chrX:18137088-18137208 1.0000 120 chrX:4702271-4702391 1.0000 120 chrX:15991927-15992047 1.0000 120 chr2L:19498078-19498198 1.0000 120 chr2R:13980104-13980224 1.0000 120 chr3R:23126349-23126469 1.0000 120 chr2L:11989858-11989978 1.0000 120 chrX:16800853-16800973 1.0000 120 chr2L:472953-473073 1.0000 120 chr2R:20643969-20644089 1.0000 120 chrX:9149173-9149293 1.0000 120 chrX:5421896-5422016 1.0000 120 chr2L:16910349-16910469 1.0000 120 chr2L:5093927-5094047 1.0000 120 chr2R:8952259-8952379 1.0000 120 chr2R:8627808-8627928 1.0000 120 chr2L:6920158-6920278 1.0000 120 chr3L:21941983-21942103 1.0000 120 chr2L:6945238-6945358 1.0000 120 chr2R:8891378-8891498 1.0000 120 chr3R:22741112-22741232 1.0000 120 chr3R:24186286-24186406 1.0000 120 chr3L:12146376-12146496 1.0000 120 chrX:6350344-6350464 1.0000 120 chr3L:12193608-12193728 1.0000 120 chr2R:23357337-23357457 1.0000 120 chr3L:6958272-6958392 1.0000 120 chr2L:12002192-12002312 1.0000 120 chr3L:9487744-9487864 1.0000 120 chrX:6968674-6968794 1.0000 120 chr2L:10968113-10968233 1.0000 120 chr3L:6756672-6756792 1.0000 120 chr3R:25065743-25065863 1.0000 120 chr2R:18128369-18128489 1.0000 120 chr2R:19283895-19284015 1.0000 120 chr2R:18135396-18135516 1.0000 120 chrX:19730959-19731079 1.0000 120 chrX:3163168-3163288 1.0000 120 chr2L:1080902-1081022 1.0000 120 chr2R:9400210-9400330 1.0000 120 chr3L:11109660-11109780 1.0000 120 chr2R:14858586-14858706 1.0000 120 chr3R:20816135-20816255 1.0000 120 chr3R:25335199-25335319 1.0000 120 chr3L:5897390-5897510 1.0000 120 chrX:4104353-4104473 1.0000 120 chr3L:20427581-20427701 1.0000 120 chrX:10212332-10212452 1.0000 120 chr2L:8300988-8301108 1.0000 120 chrX:8121105-8121225 1.0000 120 chrX:8177070-8177190 1.0000 120 chr2R:24574436-24574556 1.0000 120 chr3L:4318714-4318834 1.0000 120 chrX:21028338-21028458 1.0000 120 chr3L:5927679-5927799 1.0000 120 chr3R:9551774-9551894 1.0000 120 chr2L:18606840-18606960 1.0000 120 chr3L:7654689-7654809 1.0000 120 chr2R:15216138-15216258 1.0000 120 chr2L:10976730-10976850 1.0000 120 chr3R:5794423-5794543 1.0000 120 chr2L:18612229-18612349 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9797/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9797.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.301 C 0.198 G 0.201 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.301 C 0.198 G 0.201 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-1 width = 8 sites = 124 llr = 1150 E-value = 2.2e-150 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 111::7:: pos.-specific C :::::1aa probability G 9:9:92:: matrix T :9:a1::: bits 2.3 * 2.1 ** 1.9 * * ** 1.6 * *** ** Relative 1.4 * *** ** Entropy 1.2 ***** ** (13.4 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7654689-7654809 51 8.62e-06 GCCCGATTCA GTGTGACC GTGTCGACGA chrX:8121105-8121225 43 8.62e-06 CTGTCCCGGA GTGTGACC ATGTGGCATT chr2L:8300988-8301108 70 8.62e-06 CTTCTTTGCA GTGTGACC GCACTTCGAG chrX:10212332-10212452 60 8.62e-06 GCCTGTGCCA GTGTGACC AGGTAGCGCG chr3L:5897390-5897510 60 8.62e-06 ATGTGCATTT GTGTGACC AGCCGAACAT chr3R:20816135-20816255 49 8.62e-06 TGCAGGTGCA GTGTGACC GAGCATTGAC chr2R:14858586-14858706 41 8.62e-06 AACAGGGCCA GTGTGACC ATGACTAGCT chrX:3163168-3163288 65 8.62e-06 TGGGGTGGAA GTGTGACC GTTTTACCCA chr2R:19283895-19284015 58 8.62e-06 GCAGAATGCA GTGTGACC GTTGTTGTCA chr3L:6958272-6958392 41 8.62e-06 TTCGGAAGTG GTGTGACC GCATGAAGTT chr3R:24186286-24186406 29 8.62e-06 AGCCCCCGCA GTGTGACC ATCACTCACT chr3R:22741112-22741232 7 8.62e-06 ATGCCA GTGTGACC AGGGTTCGGA chrX:16940758-16940878 102 8.62e-06 CTTAAGCTAG GTGTGACC AAGTGCAGGG chrX:16803585-16803705 53 8.62e-06 CAAACAATTT GTGTGACC ACAGTCATGG chr3R:27681975-27682095 24 8.62e-06 TTAGCTTGAA GTGTGACC GCACTTTGGT chr3L:12267420-12267540 35 8.62e-06 CAAATGTAAA GTGTGACC AGTTACAAGT chrX:4551865-4551985 22 8.62e-06 ACTCGCCGTC GTGTGACC AGACCCAAGC chr3R:15223076-15223196 81 8.62e-06 GCTGCCGCAA GTGTGACC AGATTCGGAA chr2R:20287031-20287151 42 8.62e-06 CACATGCGCA GTGTGACC GTATGTCGTA chr3R:12429241-12429361 36 8.62e-06 TAGGTAAACA GTGTGACC GAAGCTGGAC chr2R:12184242-12184362 36 8.62e-06 TTTTTGTGTA GTGTGACC ACAGCTGCGC chr2R:10897755-10897875 97 8.62e-06 AAGCAGAACA GTGTGACC GCAGTTCACT chr3R:13271950-13272070 55 8.62e-06 CAGTGCACCA GTGTGACC GTTGAGTCCC chr2L:4967729-4967849 46 8.62e-06 CAAAAGAGCA GTGTGACC GTGGCCTAGT chr2L:16738344-16738464 39 8.62e-06 GCTATCAGCA GTGTGACC GTCTTGATGT chr2L:18820-18940 99 8.62e-06 TTTGTGGGCA GTGTGACC ATGTCCAATC chr3R:20585746-20585866 59 8.62e-06 GTGGGTAACA GTGTGACC AGGTGGCAAG chr2R:16320626-16320746 103 8.62e-06 TCGGAGTGCA GTGTGACC AGGTGGGAGA chrX:2713921-2714041 54 8.62e-06 AGAGCTCGAA GTGTGACC AACAAAATTT chrX:8142228-8142348 37 8.62e-06 CCCAACAATA GTGTGACC GACTGTGTAG chr3R:30177624-30177744 72 8.62e-06 CTGTTCGGCA GTGTGACC TGAGTTTACT chrX:19701687-19701807 50 8.62e-06 ATAATGGCCA GTGTGACC AGGCACCGAT chr3R:16273828-16273948 50 8.62e-06 AGTGCTTTTA GTGTGACC AGCATACGCT chr2R:17865931-17866051 3 8.62e-06 CA GTGTGACC GTCCATGCTA chr3L:16121946-16122066 29 8.62e-06 CAACAAAATA GTGTGACC GGACTTATGT chr2R:7445682-7445802 76 8.62e-06 ATTCTTGGTA GTGTGACC AAGCAACGCC chr3L:6756471-6756591 38 8.62e-06 GTCACGTGCA GTGTGACC GTACATGCAG chr2L:7409725-7409845 70 8.62e-06 AACGGCTTTA GTGTGACC TCACCTAAGA chr2R:20643763-20643883 23 8.62e-06 TGAATTCTCA GTGTGACC GCGTATACGC chr2R:21616781-21616901 84 8.62e-06 ATTTAGTGTG GTGTGACC GCCGCTGGTC chr3R:27695152-27695272 45 8.62e-06 TCTATTTGCA GTGTGACC ATAGCGCAAT chr2L:6127596-6127716 50 8.62e-06 CTCAAGCACA GTGTGACC GTGCGAGGAT chr2L:8740624-8740744 33 8.62e-06 TTCGTCTCTG GTGTGACC AGCTGGTGGA chr2R:17748016-17748136 89 8.62e-06 CCACTGGCTA GTGTGACC GTTGATCATT chrX:19276823-19276943 66 8.62e-06 GACCCCGTTA GTGTGACC GCCACGTGGA chr2R:24775164-24775284 79 8.62e-06 TCGGTGGATA GTGTGACC GTTCGGATAA chr3R:15278584-15278704 99 8.62e-06 TGAGAACGAA GTGTGACC AGTTATATGA chr2L:12048887-12049007 63 8.62e-06 CTGTTCAACA GTGTGACC AATATGCGCT chrX:16800648-16800768 36 8.62e-06 GCTTTAGCCA GTGTGACC GGCGGGCGAT chr3L:16782922-16783042 46 8.62e-06 CGAATGATTA GTGTGACC ATGCGGCGGT chr3R:29491062-29491182 55 8.62e-06 CAGCCGAATG GTGTGACC GTGCCGAGCG chr2R:15216138-15216258 16 1.44e-05 GACACAATCA GTGTGGCC AGCTGGAATA chr3R:9551774-9551894 14 1.44e-05 CTGACAAAGA GTGTGGCC GCGGCGAGAC chrX:21028338-21028458 18 1.44e-05 TTCCGTTTCA GTGTGGCC GTGCGCAGAA chrX:6968674-6968794 64 1.44e-05 CTGGCCGGCA GTGTGGCC ATTCGTCGGG chrX:6350344-6350464 17 1.44e-05 CACCAAGGCA GTGTGGCC TGACTTGGGG chrX:6276666-6276786 53 1.44e-05 GACTATTCCA GTGTGGCC GGCTCCACTT chrX:11578982-11579102 31 1.44e-05 GCAGTCATTA GTGTGGCC AAAACTCGAA chrX:22540343-22540463 45 1.44e-05 TTAGCGCGCA GTGTGGCC GTGCACGCGA chr3L:5561520-5561640 59 1.44e-05 GTGGACTGCA GTGTGGCC GCACTGGTAA chr3L:12399257-12399377 60 1.44e-05 GTCGGCTGCA GTGTGGCC GTACCTTTAG chrX:9158463-9158583 34 1.44e-05 CTGGCTGTCA GTGTGGCC GAATACTGGT chr3L:4135951-4136071 85 1.44e-05 TGGGGCTGTA GTGTGGCC GTTTCTTGGG chr3L:212615-212735 43 1.44e-05 GCGTATCGGA GTGTGGCC GAAGCTGACA chr2R:9964994-9965114 70 1.44e-05 GTGACGTGCG GTGTGGCC AGAGTTGCGA chr3R:4748989-4749109 63 1.44e-05 ATAAGTGACA GTGTGGCC AAATTGCCAG chr3L:21941776-21941896 38 1.44e-05 CGCGCCAGGA GTGTGGCC GTGGCGGGGA chr3R:9015239-9015359 99 1.44e-05 TTGCGTCTTG GTGTGGCC AGAAATTTTG chr2L:20926085-20926205 56 1.44e-05 AGAGCTGATA GTGTGGCC GTAGGTCGAA chrX:4548761-4548881 2 2.01e-05 A GTGTGCCC GCCGGCGGGC chrX:17244981-17245101 88 2.01e-05 CCGGATGGCA GTGTGCCC AAATGATAAA chrX:6267181-6267301 10 2.01e-05 AACAATACA GTGTGCCC AGAGACGGCG chr3R:24357865-24357985 67 2.01e-05 ATATCACACT GTGTGCCC ATATCGCTAT chr2L:16902142-16902262 71 2.01e-05 TGGCCCAAAA GTGTGCCC GCCCTTGACC chrX:20393709-20393829 37 2.01e-05 CAGCAGCGCA GTGTGCCC GCTGACTTGC chr3R:13958735-13958855 4 2.01e-05 CAA GTGTGCCC AGCTAAACGG chr3L:12193608-12193728 57 2.87e-05 CGGCTCTCTA GAGTGACC GTTCCTGAGC chr2L:6920158-6920278 10 2.87e-05 TAGCAAACA GAGTGACC GTGGACAGAC chr2R:23811943-23812063 27 2.87e-05 TCTCGAATTA GAGTGACC GTCCTCGGGT chr2R:16855355-16855475 105 2.87e-05 TTGCCAACAA GAGTGACC GCCTTTTC chr3R:27947970-27948090 36 2.87e-05 CTCGTGCCCA GAGTGACC GCAGCGGGAA chr2L:10968113-10968233 46 4.16e-05 CACTAAAGCA ATGTGACC AGAGTACGTA chr3R:23126349-23126469 55 4.16e-05 ATCGCAAGCA ATGTGACC GCAGACAGGT chrX:805961-806081 52 4.16e-05 ACTTCCGTTA ATGTGACC GTTGGCGGTC chr3R:17040106-17040226 56 4.16e-05 CGCGGTAAGA ATGTGACC GCATTGCGCC chrX:6674291-6674411 18 4.16e-05 TAATAAATTA ATGTGACC GTAAGACATG chr3L:16610356-16610476 57 4.16e-05 CACAAAATCA ATGTGACC GTTGTTGAGC chrX:21605226-21605346 5 4.16e-05 AGCA ATGTGACC GTCGCTTGGC chr2L:18612229-18612349 13 6.74e-05 TGTTGTTTGT GTGTTACC GTTTCGCACT chr2L:12002192-12002312 81 6.74e-05 GATTGGGTCA GTATGACC GCACGGCGAC chr2L:19498078-19498198 22 6.74e-05 CTTTTTATCG GTGTTACC AGCTGGATTG chrX:21031924-21032044 35 6.74e-05 CGCACCGCCA GTGTTACC AGAGGGCGAC chr2R:22127467-22127587 27 6.74e-05 CTGAAGTTCA GTATGACC GTACGCGTTT chr3R:12691449-12691569 7 6.74e-05 TGATCA GTATGACC TCAGTTGGAA chr3L:8514841-8514961 68 6.74e-05 TAGCGAATAA GTATGACC GTTGCTTCGT chr2R:9822891-9823011 57 6.74e-05 CCCGCGTGTA GTGTTACC TCAGCTATTG chr2R:24875793-24875913 65 6.74e-05 CAGTTCATCA GTATGACC GAAACATGAC chr2L:10327916-10328036 41 6.74e-05 GTCATTATTA GTGTTACC GTGCGACATG chr2R:12431030-12431150 47 6.74e-05 CTTTCTAGCA GTGTTACC AGATTGTAAA chr3R:25235488-25235608 29 6.74e-05 GTGGTTAATA GTATGACC GTAGGGAGCT chr2R:23402254-23402374 52 7.32e-05 TCAGCTGTTA GAGTGGCC AGCCATTGAC chr2R:14993765-14993885 63 7.32e-05 CATTCGTGCA GAGTGGCC AGACGTTGAA chr2R:9400210-9400330 96 8.75e-05 AAATATTTCA GCGTGACC GTAGATCGAC chr2R:7447400-7447520 50 8.75e-05 GTTGGCTCGA ATGTGGCC AGCCGCGGGT chrX:18650410-18650530 33 8.75e-05 CTTCTGTTCA GCGTGACC AGAGTGCTTT chr3L:211389-211509 55 1.01e-04 AGCTTTTTTA GTGTGACT GCACGCCGGA chr2L:9253053-9253173 59 1.18e-04 TCATGGAACA GTGTTGCC AGATGGCTTT chr3L:18820954-18821074 97 1.26e-04 TTGTGAGAAA CTGTGACC ATGTCAGTAT chr3R:17546441-17546561 54 1.39e-04 TGACAGCAGG GTGTAACC AGCTCTGCTT chr3L:13389958-13390078 62 1.39e-04 CGTAGGCCCA GTGTAACC GTATTTCGAT chr2L:10206902-10207022 54 1.39e-04 TCGCCCAGAT GTGTAACC GTACTCGCAT chr2L:11989858-11989978 14 1.49e-04 AATAATCTTG GGGTGACC ATTATAAAAT chr2R:23357337-23357457 38 1.63e-04 GGCGTGTGGT GTGTGGCT CGAAATACCA chrX:16800853-16800973 72 1.63e-04 TTGAATGCTA GTGTGGCT GCAACCAATA chr3R:22468137-22468257 42 1.63e-04 GATCGAATTA GTGTGGCT GTAGGTGCGA chr3R:29816408-29816528 45 1.63e-04 GTGACGACCA GTGTGGCT GCGCTAATGA chr2R:11289749-11289869 29 1.63e-04 ACAATCGCCA GTGGGACC AGGTGATACA chr3R:8723069-8723189 69 1.83e-04 TTCAAATCTA ATGTGCCC GTTCGTTTAC chr3R:15268572-15268692 39 1.83e-04 CCTTACTTTT CTGTGGCC CCCCCATTGT chr3L:12205857-12205977 5 2.01e-04 TTCA GTGTGACG ATGCGCAATG chrX:9247268-9247388 56 2.34e-04 TCCATTTAAG TTGTGACC ATTGGCCGCT chrX:15991927-15992047 24 3.42e-04 TCACAGCACA ATATGACC ATAACGACTT chr3R:25065542-25065662 44 3.42e-04 GCTGAAAATA ATATGACC ATACGTCTCA chr3R:15328225-15328345 41 4.50e-04 CGCTATATGC GAGTTGCC AAAACAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7654689-7654809 8.6e-06 50_[+1]_62 chrX:8121105-8121225 8.6e-06 42_[+1]_70 chr2L:8300988-8301108 8.6e-06 69_[+1]_43 chrX:10212332-10212452 8.6e-06 59_[+1]_53 chr3L:5897390-5897510 8.6e-06 59_[+1]_53 chr3R:20816135-20816255 8.6e-06 48_[+1]_64 chr2R:14858586-14858706 8.6e-06 40_[+1]_72 chrX:3163168-3163288 8.6e-06 64_[+1]_48 chr2R:19283895-19284015 8.6e-06 57_[+1]_55 chr3L:6958272-6958392 8.6e-06 40_[+1]_72 chr3R:24186286-24186406 8.6e-06 28_[+1]_84 chr3R:22741112-22741232 8.6e-06 6_[+1]_106 chrX:16940758-16940878 8.6e-06 101_[+1]_11 chrX:16803585-16803705 8.6e-06 52_[+1]_60 chr3R:27681975-27682095 8.6e-06 23_[+1]_89 chr3L:12267420-12267540 8.6e-06 34_[+1]_78 chrX:4551865-4551985 8.6e-06 21_[+1]_91 chr3R:15223076-15223196 8.6e-06 80_[+1]_32 chr2R:20287031-20287151 8.6e-06 41_[+1]_71 chr3R:12429241-12429361 8.6e-06 35_[+1]_77 chr2R:12184242-12184362 8.6e-06 35_[+1]_77 chr2R:10897755-10897875 8.6e-06 96_[+1]_16 chr3R:13271950-13272070 8.6e-06 54_[+1]_58 chr2L:4967729-4967849 8.6e-06 45_[+1]_67 chr2L:16738344-16738464 8.6e-06 38_[+1]_74 chr2L:18820-18940 8.6e-06 98_[+1]_14 chr3R:20585746-20585866 8.6e-06 58_[+1]_54 chr2R:16320626-16320746 8.6e-06 102_[+1]_10 chrX:2713921-2714041 8.6e-06 53_[+1]_59 chrX:8142228-8142348 8.6e-06 36_[+1]_76 chr3R:30177624-30177744 8.6e-06 71_[+1]_41 chrX:19701687-19701807 8.6e-06 49_[+1]_63 chr3R:16273828-16273948 8.6e-06 49_[+1]_63 chr2R:17865931-17866051 8.6e-06 2_[+1]_110 chr3L:16121946-16122066 8.6e-06 28_[+1]_84 chr2R:7445682-7445802 8.6e-06 75_[+1]_37 chr3L:6756471-6756591 8.6e-06 37_[+1]_75 chr2L:7409725-7409845 8.6e-06 69_[+1]_43 chr2R:20643763-20643883 8.6e-06 22_[+1]_90 chr2R:21616781-21616901 8.6e-06 83_[+1]_29 chr3R:27695152-27695272 8.6e-06 44_[+1]_68 chr2L:6127596-6127716 8.6e-06 49_[+1]_63 chr2L:8740624-8740744 8.6e-06 32_[+1]_80 chr2R:17748016-17748136 8.6e-06 88_[+1]_24 chrX:19276823-19276943 8.6e-06 65_[+1]_47 chr2R:24775164-24775284 8.6e-06 78_[+1]_34 chr3R:15278584-15278704 8.6e-06 98_[+1]_14 chr2L:12048887-12049007 8.6e-06 62_[+1]_50 chrX:16800648-16800768 8.6e-06 35_[+1]_77 chr3L:16782922-16783042 8.6e-06 45_[+1]_67 chr3R:29491062-29491182 8.6e-06 54_[+1]_58 chr2R:15216138-15216258 1.4e-05 15_[+1]_97 chr3R:9551774-9551894 1.4e-05 13_[+1]_99 chrX:21028338-21028458 1.4e-05 17_[+1]_95 chrX:6968674-6968794 1.4e-05 63_[+1]_49 chrX:6350344-6350464 1.4e-05 16_[+1]_96 chrX:6276666-6276786 1.4e-05 52_[+1]_60 chrX:11578982-11579102 1.4e-05 30_[+1]_82 chrX:22540343-22540463 1.4e-05 44_[+1]_68 chr3L:5561520-5561640 1.4e-05 58_[+1]_54 chr3L:12399257-12399377 1.4e-05 59_[+1]_53 chrX:9158463-9158583 1.4e-05 33_[+1]_79 chr3L:4135951-4136071 1.4e-05 84_[+1]_28 chr3L:212615-212735 1.4e-05 42_[+1]_70 chr2R:9964994-9965114 1.4e-05 69_[+1]_43 chr3R:4748989-4749109 1.4e-05 62_[+1]_50 chr3L:21941776-21941896 1.4e-05 37_[+1]_75 chr3R:9015239-9015359 1.4e-05 98_[+1]_14 chr2L:20926085-20926205 1.4e-05 55_[+1]_57 chrX:4548761-4548881 2e-05 1_[+1]_111 chrX:17244981-17245101 2e-05 87_[+1]_25 chrX:6267181-6267301 2e-05 9_[+1]_103 chr3R:24357865-24357985 2e-05 66_[+1]_46 chr2L:16902142-16902262 2e-05 70_[+1]_42 chrX:20393709-20393829 2e-05 36_[+1]_76 chr3R:13958735-13958855 2e-05 3_[+1]_109 chr3L:12193608-12193728 2.9e-05 56_[+1]_56 chr2L:6920158-6920278 2.9e-05 9_[+1]_103 chr2R:23811943-23812063 2.9e-05 26_[+1]_86 chr2R:16855355-16855475 2.9e-05 104_[+1]_8 chr3R:27947970-27948090 2.9e-05 35_[+1]_77 chr2L:10968113-10968233 4.2e-05 45_[+1]_67 chr3R:23126349-23126469 4.2e-05 54_[+1]_58 chrX:805961-806081 4.2e-05 51_[+1]_61 chr3R:17040106-17040226 4.2e-05 55_[+1]_57 chrX:6674291-6674411 4.2e-05 17_[+1]_95 chr3L:16610356-16610476 4.2e-05 56_[+1]_56 chrX:21605226-21605346 4.2e-05 4_[+1]_108 chr2L:18612229-18612349 6.7e-05 12_[+1]_100 chr2L:12002192-12002312 6.7e-05 80_[+1]_32 chr2L:19498078-19498198 6.7e-05 21_[+1]_91 chrX:21031924-21032044 6.7e-05 34_[+1]_78 chr2R:22127467-22127587 6.7e-05 26_[+1]_86 chr3R:12691449-12691569 6.7e-05 6_[+1]_106 chr3L:8514841-8514961 6.7e-05 67_[+1]_45 chr2R:9822891-9823011 6.7e-05 56_[+1]_56 chr2R:24875793-24875913 6.7e-05 64_[+1]_48 chr2L:10327916-10328036 6.7e-05 40_[+1]_72 chr2R:12431030-12431150 6.7e-05 46_[+1]_66 chr3R:25235488-25235608 6.7e-05 28_[+1]_84 chr2R:23402254-23402374 7.3e-05 51_[+1]_61 chr2R:14993765-14993885 7.3e-05 62_[+1]_50 chr2R:9400210-9400330 8.8e-05 95_[+1]_17 chr2R:7447400-7447520 8.8e-05 49_[+1]_63 chrX:18650410-18650530 8.8e-05 32_[+1]_80 chr3L:211389-211509 0.0001 54_[+1]_58 chr2L:9253053-9253173 0.00012 58_[+1]_54 chr3L:18820954-18821074 0.00013 96_[+1]_16 chr3R:17546441-17546561 0.00014 53_[+1]_59 chr3L:13389958-13390078 0.00014 61_[+1]_51 chr2L:10206902-10207022 0.00014 53_[+1]_59 chr2L:11989858-11989978 0.00015 13_[+1]_99 chr2R:23357337-23357457 0.00016 37_[+1]_75 chrX:16800853-16800973 0.00016 71_[+1]_41 chr3R:22468137-22468257 0.00016 41_[+1]_71 chr3R:29816408-29816528 0.00016 44_[+1]_68 chr2R:11289749-11289869 0.00016 28_[+1]_84 chr3R:8723069-8723189 0.00018 68_[+1]_44 chr3R:15268572-15268692 0.00018 38_[+1]_74 chr3L:12205857-12205977 0.0002 4_[+1]_108 chrX:9247268-9247388 0.00023 55_[+1]_57 chrX:15991927-15992047 0.00034 23_[+1]_89 chr3R:25065542-25065662 0.00034 43_[+1]_69 chr3R:15328225-15328345 0.00045 40_[+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=124 chr3L:7654689-7654809 ( 51) GTGTGACC 1 chrX:8121105-8121225 ( 43) GTGTGACC 1 chr2L:8300988-8301108 ( 70) GTGTGACC 1 chrX:10212332-10212452 ( 60) GTGTGACC 1 chr3L:5897390-5897510 ( 60) GTGTGACC 1 chr3R:20816135-20816255 ( 49) GTGTGACC 1 chr2R:14858586-14858706 ( 41) GTGTGACC 1 chrX:3163168-3163288 ( 65) GTGTGACC 1 chr2R:19283895-19284015 ( 58) GTGTGACC 1 chr3L:6958272-6958392 ( 41) GTGTGACC 1 chr3R:24186286-24186406 ( 29) GTGTGACC 1 chr3R:22741112-22741232 ( 7) GTGTGACC 1 chrX:16940758-16940878 ( 102) GTGTGACC 1 chrX:16803585-16803705 ( 53) GTGTGACC 1 chr3R:27681975-27682095 ( 24) GTGTGACC 1 chr3L:12267420-12267540 ( 35) GTGTGACC 1 chrX:4551865-4551985 ( 22) GTGTGACC 1 chr3R:15223076-15223196 ( 81) GTGTGACC 1 chr2R:20287031-20287151 ( 42) GTGTGACC 1 chr3R:12429241-12429361 ( 36) GTGTGACC 1 chr2R:12184242-12184362 ( 36) GTGTGACC 1 chr2R:10897755-10897875 ( 97) GTGTGACC 1 chr3R:13271950-13272070 ( 55) GTGTGACC 1 chr2L:4967729-4967849 ( 46) GTGTGACC 1 chr2L:16738344-16738464 ( 39) GTGTGACC 1 chr2L:18820-18940 ( 99) GTGTGACC 1 chr3R:20585746-20585866 ( 59) GTGTGACC 1 chr2R:16320626-16320746 ( 103) GTGTGACC 1 chrX:2713921-2714041 ( 54) GTGTGACC 1 chrX:8142228-8142348 ( 37) GTGTGACC 1 chr3R:30177624-30177744 ( 72) GTGTGACC 1 chrX:19701687-19701807 ( 50) GTGTGACC 1 chr3R:16273828-16273948 ( 50) GTGTGACC 1 chr2R:17865931-17866051 ( 3) GTGTGACC 1 chr3L:16121946-16122066 ( 29) GTGTGACC 1 chr2R:7445682-7445802 ( 76) GTGTGACC 1 chr3L:6756471-6756591 ( 38) GTGTGACC 1 chr2L:7409725-7409845 ( 70) GTGTGACC 1 chr2R:20643763-20643883 ( 23) GTGTGACC 1 chr2R:21616781-21616901 ( 84) GTGTGACC 1 chr3R:27695152-27695272 ( 45) GTGTGACC 1 chr2L:6127596-6127716 ( 50) GTGTGACC 1 chr2L:8740624-8740744 ( 33) GTGTGACC 1 chr2R:17748016-17748136 ( 89) GTGTGACC 1 chrX:19276823-19276943 ( 66) GTGTGACC 1 chr2R:24775164-24775284 ( 79) GTGTGACC 1 chr3R:15278584-15278704 ( 99) GTGTGACC 1 chr2L:12048887-12049007 ( 63) GTGTGACC 1 chrX:16800648-16800768 ( 36) GTGTGACC 1 chr3L:16782922-16783042 ( 46) GTGTGACC 1 chr3R:29491062-29491182 ( 55) GTGTGACC 1 chr2R:15216138-15216258 ( 16) GTGTGGCC 1 chr3R:9551774-9551894 ( 14) GTGTGGCC 1 chrX:21028338-21028458 ( 18) GTGTGGCC 1 chrX:6968674-6968794 ( 64) GTGTGGCC 1 chrX:6350344-6350464 ( 17) GTGTGGCC 1 chrX:6276666-6276786 ( 53) GTGTGGCC 1 chrX:11578982-11579102 ( 31) GTGTGGCC 1 chrX:22540343-22540463 ( 45) GTGTGGCC 1 chr3L:5561520-5561640 ( 59) GTGTGGCC 1 chr3L:12399257-12399377 ( 60) GTGTGGCC 1 chrX:9158463-9158583 ( 34) GTGTGGCC 1 chr3L:4135951-4136071 ( 85) GTGTGGCC 1 chr3L:212615-212735 ( 43) GTGTGGCC 1 chr2R:9964994-9965114 ( 70) GTGTGGCC 1 chr3R:4748989-4749109 ( 63) GTGTGGCC 1 chr3L:21941776-21941896 ( 38) GTGTGGCC 1 chr3R:9015239-9015359 ( 99) GTGTGGCC 1 chr2L:20926085-20926205 ( 56) GTGTGGCC 1 chrX:4548761-4548881 ( 2) GTGTGCCC 1 chrX:17244981-17245101 ( 88) GTGTGCCC 1 chrX:6267181-6267301 ( 10) GTGTGCCC 1 chr3R:24357865-24357985 ( 67) GTGTGCCC 1 chr2L:16902142-16902262 ( 71) GTGTGCCC 1 chrX:20393709-20393829 ( 37) GTGTGCCC 1 chr3R:13958735-13958855 ( 4) GTGTGCCC 1 chr3L:12193608-12193728 ( 57) GAGTGACC 1 chr2L:6920158-6920278 ( 10) GAGTGACC 1 chr2R:23811943-23812063 ( 27) GAGTGACC 1 chr2R:16855355-16855475 ( 105) GAGTGACC 1 chr3R:27947970-27948090 ( 36) GAGTGACC 1 chr2L:10968113-10968233 ( 46) ATGTGACC 1 chr3R:23126349-23126469 ( 55) ATGTGACC 1 chrX:805961-806081 ( 52) ATGTGACC 1 chr3R:17040106-17040226 ( 56) ATGTGACC 1 chrX:6674291-6674411 ( 18) ATGTGACC 1 chr3L:16610356-16610476 ( 57) ATGTGACC 1 chrX:21605226-21605346 ( 5) ATGTGACC 1 chr2L:18612229-18612349 ( 13) GTGTTACC 1 chr2L:12002192-12002312 ( 81) GTATGACC 1 chr2L:19498078-19498198 ( 22) GTGTTACC 1 chrX:21031924-21032044 ( 35) GTGTTACC 1 chr2R:22127467-22127587 ( 27) GTATGACC 1 chr3R:12691449-12691569 ( 7) GTATGACC 1 chr3L:8514841-8514961 ( 68) GTATGACC 1 chr2R:9822891-9823011 ( 57) GTGTTACC 1 chr2R:24875793-24875913 ( 65) GTATGACC 1 chr2L:10327916-10328036 ( 41) GTGTTACC 1 chr2R:12431030-12431150 ( 47) GTGTTACC 1 chr3R:25235488-25235608 ( 29) GTATGACC 1 chr2R:23402254-23402374 ( 52) GAGTGGCC 1 chr2R:14993765-14993885 ( 63) GAGTGGCC 1 chr2R:9400210-9400330 ( 96) GCGTGACC 1 chr2R:7447400-7447520 ( 50) ATGTGGCC 1 chrX:18650410-18650530 ( 33) GCGTGACC 1 chr3L:211389-211509 ( 55) GTGTGACT 1 chr2L:9253053-9253173 ( 59) GTGTTGCC 1 chr3L:18820954-18821074 ( 97) CTGTGACC 1 chr3R:17546441-17546561 ( 54) GTGTAACC 1 chr3L:13389958-13390078 ( 62) GTGTAACC 1 chr2L:10206902-10207022 ( 54) GTGTAACC 1 chr2L:11989858-11989978 ( 14) GGGTGACC 1 chr2R:23357337-23357457 ( 38) GTGTGGCT 1 chrX:16800853-16800973 ( 72) GTGTGGCT 1 chr3R:22468137-22468257 ( 42) GTGTGGCT 1 chr3R:29816408-29816528 ( 45) GTGTGGCT 1 chr2R:11289749-11289869 ( 29) GTGGGACC 1 chr3R:8723069-8723189 ( 69) ATGTGCCC 1 chr3R:15268572-15268692 ( 39) CTGTGGCC 1 chr3L:12205857-12205977 ( 5) GTGTGACG 1 chrX:9247268-9247388 ( 56) TTGTGACC 1 chrX:15991927-15992047 ( 24) ATATGACC 1 chr3R:25065542-25065662 ( 44) ATATGACC 1 chr3R:15328225-15328345 ( 41) GAGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.53415 E= 2.2e-150 -176 -362 214 -521 -222 -362 -464 160 -222 -1360 222 -1360 -1360 -1360 -464 173 -364 -1360 218 -222 124 -162 17 -1360 -1360 234 -1360 -1360 -1360 227 -464 -289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 2.2e-150 0.088710 0.016129 0.887097 0.008065 0.064516 0.016129 0.008065 0.911290 0.064516 0.000000 0.935484 0.000000 0.000000 0.000000 0.008065 0.991935 0.024194 0.000000 0.911290 0.064516 0.709677 0.064516 0.225806 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.951613 0.008065 0.040323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 regular expression -------------------------------------------------------------------------------- GTGTG[AG]CC -------------------------------------------------------------------------------- Time 7.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-2 width = 8 sites = 90 llr = 881 E-value = 1.5e-109 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1a:9: pos.-specific C ::19:9:a probability G aa1::::: matrix T ::8::11: bits 2.3 * 2.1 ** * * 1.9 ** * * * 1.6 ** *** * Relative 1.4 ** *** * Entropy 1.2 ** ***** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10976730-10976850 54 8.52e-06 ACAAAGCTTC GGTCACAC TGCAAAGGTG chrX:4104353-4104473 97 8.52e-06 ACCGCATCAC GGTCACAC TGGCGGATTT chr3R:25335199-25335319 89 8.52e-06 CATAAACATC GGTCACAC TCAAAAGGGC chr3L:11109660-11109780 31 8.52e-06 AAGCAAAAAC GGTCACAC TGCCCGCACA chr2R:18135396-18135516 27 8.52e-06 TGTTGGATGC GGTCACAC TGGTGGGCAT chrX:6968674-6968794 106 8.52e-06 TCCGACAATT GGTCACAC ATTCGAC chr2R:8952259-8952379 76 8.52e-06 CTGCAGGTGC GGTCACAC TGTTTGCAAA chr2L:5093927-5094047 88 8.52e-06 CAATGCCCCT GGTCACAC CTGCCATAAT chrX:5421896-5422016 100 8.52e-06 AATAAGCAAC GGTCACAC TTGGTCACGT chr2L:472953-473073 66 8.52e-06 TGCCTGAAAC GGTCACAC TGTGCTCAGA chr2L:11989858-11989978 64 8.52e-06 AGTAGCTACC GGTCACAC TGTTGCTCAG chr2R:13980104-13980224 98 8.52e-06 TACAAAGTTT GGTCACAC TATTTGGTTG chrX:4702271-4702391 8 8.52e-06 TATTTAG GGTCACAC TAATAGGCCA chrX:18137088-18137208 72 8.52e-06 TAAGAAGAAC GGTCACAC TGGCCCGTGC chr2L:6000178-6000298 59 8.52e-06 GTGCAGTCAC GGTCACAC TGGCGAGCAG chr2L:7063940-7064060 44 8.52e-06 GTACAGCTGC GGTCACAC AATTAAAAGT chr3R:24717452-24717572 67 8.52e-06 ACTGCACTCT GGTCACAC TCATGACAAG chr2L:4818197-4818317 98 8.52e-06 ATAAACTAAT GGTCACAC TTTTATTTGG chrX:6276666-6276786 87 8.52e-06 GGAGTCAGCT GGTCACAC AAAATACCCC chrX:11578982-11579102 94 8.52e-06 TTCGCGGCCT GGTCACAC TAAGCTAGGG chr2R:16783613-16783733 58 8.52e-06 AAAGCCACAC GGTCACAC TGTACGTTGG chrX:647227-647347 79 8.52e-06 AAAAAGCGGC GGTCACAC TGCTTGAGCC chr3L:4626682-4626802 53 8.52e-06 AAAAGTCCGC GGTCACAC TGCCCATCTG chr2R:12138709-12138829 42 8.52e-06 ATCGAAATGC GGTCACAC TAGACAGCTG chr3R:12705068-12705188 23 8.52e-06 TTCGATCTGT GGTCACAC CTCAAACCGG chr2L:4955449-4955569 68 8.52e-06 TGGCTCACCT GGTCACAC AGAGCCATGC chr2R:15682685-15682805 25 8.52e-06 ATTTGCGGTC GGTCACAC TGAAATTCAA chr3R:31617928-31618048 56 8.52e-06 TCATGAGCCT GGTCACAC TGTCTTGCAC chr3R:20635338-20635458 61 8.52e-06 GCGATATTTC GGTCACAC AGAGCGCTTA chr2L:3452382-3452502 84 8.52e-06 CCTGCCCTAC GGTCACAC CGAACACAAC chr2L:20682320-20682440 46 8.52e-06 ACCACCGCCT GGTCACAC TAAGCGGCCG chr3L:19261385-19261505 43 8.52e-06 ACTCCGCTTT GGTCACAC TGCTCGGCGA chr2R:16001654-16001774 92 8.52e-06 ATTCCACGGC GGTCACAC CGAAAAGCGA chr3R:4484988-4485108 33 8.52e-06 GTATCGGAAT GGTCACAC TGCTGCGTTG chr3L:3042315-3042435 69 8.52e-06 TGCGTATTAC GGTCACAC CAATGCCGGC chr2L:6658471-6658591 51 8.52e-06 GTACTCCAAC GGTCACAC TACTTAGACC chr2L:20104595-20104715 104 8.52e-06 CGAGATATGC GGTCACAC CAGGCCAAG chr3R:24851531-24851651 68 8.52e-06 GTACCGAAAC GGTCACAC GCAACACTGC chrX:15769598-15769718 63 8.52e-06 GCCACGACAT GGTCACAC TGAACGCTTG chr3L:18745794-18745914 53 8.52e-06 CTCGTGTTCT GGTCACAC TGTTATCTGG chr3R:23924358-23924478 43 8.52e-06 TTCCGCATGC GGTCACAC TTAAAAGTGC chr3L:3169255-3169375 38 8.52e-06 TCATCTGTAT GGTCACAC TGTTTTCACG chrX:15788765-15788885 93 8.52e-06 GCCGTGCGAC GGTCACAC TGGATCTGAA chr3L:4003394-4003514 65 8.52e-06 AGCGCGCTAT GGTCACAC AACCAGCTGA chr2R:20870689-20870809 42 8.52e-06 AGTGGGAAAG GGTCACAC TGACTAAATA chr2R:16957426-16957546 35 8.52e-06 AAACGTAAGC GGTCACAC TCAGAATCAG chr3L:4277889-4278009 77 8.52e-06 CGCACCTTCT GGTCACAC CTGAGCATTG chr3R:22741112-22741232 49 1.41e-05 TCACTTCATT GGCCACAC TTACAAGTGG chr3R:17546441-17546561 96 1.41e-05 ACAGGAAGCT GGCCACAC AGTACTTGAG chr3R:13683178-13683298 98 1.41e-05 GCCGCCACCT GGCCACAC TAAGGCGGCA chr2R:12636131-12636251 76 1.41e-05 CGCTGACCTT GGCCACAC CTAGCACCAT chr3R:27272432-27272552 69 1.41e-05 GCCCCAGTAC GGCCACAC TGCACGTATA chr2L:13790923-13791043 34 1.41e-05 TCTCCCACTT GGCCACAC TAATGTAGCG chr3L:21823385-21823505 77 1.41e-05 CGCAGCTAAC GGCCACAC TGCGCCCCAA chr3R:9551976-9552096 61 1.41e-05 TCACAAACAC GGCCACAC TAATCTCCAC chr2R:23357337-23357457 82 1.99e-05 GTATAGAAAC GGGCACAC TAATGCGCAG chr3R:29933214-29933334 99 1.99e-05 TTGCCCTAAC GGGCACAC TGCAAATAAT chr3L:11795538-11795658 70 1.99e-05 TGGTCAGCCT GGGCACAC TGCACGTTTG chr3R:25023225-25023345 46 1.99e-05 GTTCATCAGC GGGCACAC TTCCAACCGG chr2L:13179181-13179301 47 1.99e-05 TCGAAAGTAC GGGCACAC TAGCCGCCGA chr2R:8170209-8170329 34 1.99e-05 GCAAACAAAC GGGCACAC TACTTTTTGT chr3L:7369785-7369905 57 2.84e-05 GTCGCCATGC GGTCACTC TGTTCACGTC chr2R:8625409-8625529 50 2.84e-05 TAGCGCATAT GGTCACTC TAGGCCATTA chrX:23082641-23082761 98 2.84e-05 TTTTTCCTCT GGTCACTC TCGTTTTAAC chr3R:5219570-5219690 95 2.84e-05 TCCTGCAGAC GGTCACTC TACGGGAGTC chr3L:7238525-7238645 35 2.84e-05 GTACGCAACT GGTCACTC TAGTATTATT chr3L:4318714-4318834 46 4.13e-05 CACAAACATT GGTCATAC TGTGTGAATG chr2L:1080902-1081022 25 4.13e-05 TATCAGTTGC GGTCATAC TAACAGCTAC chr2R:20643969-20644089 90 4.13e-05 TATAGTTTAC GGTCATAC TAATAGCATT chr3R:15328225-15328345 78 4.13e-05 TTGCGAATTC GGTCATAC TGTGTTGTTT chr2R:23752663-23752783 98 4.13e-05 AGGCAGGAAG GGTCATAC TAACACCTCC chr2L:14334068-14334188 74 4.13e-05 GTCCCCACTC GGTCATAC CGATTGGCTT chr3L:4103517-4103637 58 4.13e-05 GCAGACAAAC GGTCATAC TGCTCTGCTG chrX:19730959-19731079 61 5.99e-05 CCCTGTAAAC GGTCGCAC TAATTGCAGA chr2R:11293134-11293254 98 5.99e-05 ATTGCGTTAT GGTAACAC TACGTGATTT chr3L:20129085-20129205 82 5.99e-05 ATCGCCGACT GGTAACAC TGCGCTCAGC chr3R:9748055-9748175 94 5.99e-05 TATACCATTT GGTAACAC TGCCTTGAAC chr3R:24922423-24922543 57 5.99e-05 AGCAGCGCCT GGTAACAC TACGAGATCA chr3R:29816408-29816528 87 5.99e-05 GCACAGACAT GGTCGCAC TATTTTCGGC chr2L:8740624-8740744 76 5.99e-05 TCGAGTATTT GGTAACAC TAATGCTTGT chr3L:16587104-16587224 4 7.28e-05 TAC GGTCACAT TGCCAGTAAG chr3L:21635304-21635424 8 7.28e-05 CATGCGC GGTCACAT TGAGCGTAAA chr2L:13827718-13827838 85 7.28e-05 CTTGCGCGGC GGTCACAT TGATTTAATT chrX:18650410-18650530 65 8.41e-05 AGCGCAGCAT GGTCACGC TGTTTGATTG chrX:20393709-20393829 89 8.41e-05 ACGACGAACT GGTCACCC TGGCCTGAAC chr2L:10056799-10056919 85 1.02e-04 AGGCACCTAC GTTCACAC TGGCATCAAA chr3R:19027274-19027394 84 1.02e-04 TGCAGCAAAC GTTCACAC TGCGCAGCTG chr2L:292401-292521 10 1.02e-04 CCGTAAACT GGCCACTC TCTTGTCAGC chr3L:12267420-12267540 97 1.17e-04 TAAAAGCGGC GGGCACTC CGCAACTCAG chr3L:15504752-15504872 52 1.17e-04 GCCACATCGC CGTCACAC ATGTTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10976730-10976850 8.5e-06 53_[+2]_59 chrX:4104353-4104473 8.5e-06 96_[+2]_16 chr3R:25335199-25335319 8.5e-06 88_[+2]_24 chr3L:11109660-11109780 8.5e-06 30_[+2]_82 chr2R:18135396-18135516 8.5e-06 26_[+2]_86 chrX:6968674-6968794 8.5e-06 105_[+2]_7 chr2R:8952259-8952379 8.5e-06 75_[+2]_37 chr2L:5093927-5094047 8.5e-06 87_[+2]_25 chrX:5421896-5422016 8.5e-06 99_[+2]_13 chr2L:472953-473073 8.5e-06 65_[+2]_47 chr2L:11989858-11989978 8.5e-06 63_[+2]_49 chr2R:13980104-13980224 8.5e-06 97_[+2]_15 chrX:4702271-4702391 8.5e-06 7_[+2]_105 chrX:18137088-18137208 8.5e-06 71_[+2]_41 chr2L:6000178-6000298 8.5e-06 58_[+2]_54 chr2L:7063940-7064060 8.5e-06 43_[+2]_69 chr3R:24717452-24717572 8.5e-06 66_[+2]_46 chr2L:4818197-4818317 8.5e-06 97_[+2]_15 chrX:6276666-6276786 8.5e-06 86_[+2]_26 chrX:11578982-11579102 8.5e-06 93_[+2]_19 chr2R:16783613-16783733 8.5e-06 57_[+2]_55 chrX:647227-647347 8.5e-06 78_[+2]_34 chr3L:4626682-4626802 8.5e-06 52_[+2]_60 chr2R:12138709-12138829 8.5e-06 41_[+2]_71 chr3R:12705068-12705188 8.5e-06 22_[+2]_90 chr2L:4955449-4955569 8.5e-06 67_[+2]_45 chr2R:15682685-15682805 8.5e-06 24_[+2]_88 chr3R:31617928-31618048 8.5e-06 55_[+2]_57 chr3R:20635338-20635458 8.5e-06 60_[+2]_52 chr2L:3452382-3452502 8.5e-06 83_[+2]_29 chr2L:20682320-20682440 8.5e-06 45_[+2]_67 chr3L:19261385-19261505 8.5e-06 42_[+2]_70 chr2R:16001654-16001774 8.5e-06 91_[+2]_21 chr3R:4484988-4485108 8.5e-06 32_[+2]_80 chr3L:3042315-3042435 8.5e-06 68_[+2]_44 chr2L:6658471-6658591 8.5e-06 50_[+2]_62 chr2L:20104595-20104715 8.5e-06 103_[+2]_9 chr3R:24851531-24851651 8.5e-06 67_[+2]_45 chrX:15769598-15769718 8.5e-06 62_[+2]_50 chr3L:18745794-18745914 8.5e-06 52_[+2]_60 chr3R:23924358-23924478 8.5e-06 42_[+2]_70 chr3L:3169255-3169375 8.5e-06 37_[+2]_75 chrX:15788765-15788885 8.5e-06 92_[+2]_20 chr3L:4003394-4003514 8.5e-06 64_[+2]_48 chr2R:20870689-20870809 8.5e-06 41_[+2]_71 chr2R:16957426-16957546 8.5e-06 34_[+2]_78 chr3L:4277889-4278009 8.5e-06 76_[+2]_36 chr3R:22741112-22741232 1.4e-05 48_[+2]_64 chr3R:17546441-17546561 1.4e-05 95_[+2]_17 chr3R:13683178-13683298 1.4e-05 97_[+2]_15 chr2R:12636131-12636251 1.4e-05 75_[+2]_37 chr3R:27272432-27272552 1.4e-05 68_[+2]_44 chr2L:13790923-13791043 1.4e-05 33_[+2]_79 chr3L:21823385-21823505 1.4e-05 76_[+2]_36 chr3R:9551976-9552096 1.4e-05 60_[+2]_52 chr2R:23357337-23357457 2e-05 81_[+2]_31 chr3R:29933214-29933334 2e-05 98_[+2]_14 chr3L:11795538-11795658 2e-05 69_[+2]_43 chr3R:25023225-25023345 2e-05 45_[+2]_67 chr2L:13179181-13179301 2e-05 46_[+2]_66 chr2R:8170209-8170329 2e-05 33_[+2]_79 chr3L:7369785-7369905 2.8e-05 56_[+2]_56 chr2R:8625409-8625529 2.8e-05 49_[+2]_63 chrX:23082641-23082761 2.8e-05 97_[+2]_15 chr3R:5219570-5219690 2.8e-05 94_[+2]_18 chr3L:7238525-7238645 2.8e-05 34_[+2]_78 chr3L:4318714-4318834 4.1e-05 45_[+2]_67 chr2L:1080902-1081022 4.1e-05 24_[+2]_88 chr2R:20643969-20644089 4.1e-05 89_[+2]_23 chr3R:15328225-15328345 4.1e-05 77_[+2]_35 chr2R:23752663-23752783 4.1e-05 97_[+2]_15 chr2L:14334068-14334188 4.1e-05 73_[+2]_39 chr3L:4103517-4103637 4.1e-05 57_[+2]_55 chrX:19730959-19731079 6e-05 60_[+2]_52 chr2R:11293134-11293254 6e-05 97_[+2]_15 chr3L:20129085-20129205 6e-05 81_[+2]_31 chr3R:9748055-9748175 6e-05 93_[+2]_19 chr3R:24922423-24922543 6e-05 56_[+2]_56 chr3R:29816408-29816528 6e-05 86_[+2]_26 chr2L:8740624-8740744 6e-05 75_[+2]_37 chr3L:16587104-16587224 7.3e-05 3_[+2]_109 chr3L:21635304-21635424 7.3e-05 7_[+2]_105 chr2L:13827718-13827838 7.3e-05 84_[+2]_28 chrX:18650410-18650530 8.4e-05 64_[+2]_48 chrX:20393709-20393829 8.4e-05 88_[+2]_24 chr2L:10056799-10056919 0.0001 84_[+2]_28 chr3R:19027274-19027394 0.0001 83_[+2]_29 chr2L:292401-292521 0.0001 9_[+2]_103 chr3L:12267420-12267540 0.00012 96_[+2]_16 chr3L:15504752-15504872 0.00012 51_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=90 chr2L:10976730-10976850 ( 54) GGTCACAC 1 chrX:4104353-4104473 ( 97) GGTCACAC 1 chr3R:25335199-25335319 ( 89) GGTCACAC 1 chr3L:11109660-11109780 ( 31) GGTCACAC 1 chr2R:18135396-18135516 ( 27) GGTCACAC 1 chrX:6968674-6968794 ( 106) GGTCACAC 1 chr2R:8952259-8952379 ( 76) GGTCACAC 1 chr2L:5093927-5094047 ( 88) GGTCACAC 1 chrX:5421896-5422016 ( 100) GGTCACAC 1 chr2L:472953-473073 ( 66) GGTCACAC 1 chr2L:11989858-11989978 ( 64) GGTCACAC 1 chr2R:13980104-13980224 ( 98) GGTCACAC 1 chrX:4702271-4702391 ( 8) GGTCACAC 1 chrX:18137088-18137208 ( 72) GGTCACAC 1 chr2L:6000178-6000298 ( 59) GGTCACAC 1 chr2L:7063940-7064060 ( 44) GGTCACAC 1 chr3R:24717452-24717572 ( 67) GGTCACAC 1 chr2L:4818197-4818317 ( 98) GGTCACAC 1 chrX:6276666-6276786 ( 87) GGTCACAC 1 chrX:11578982-11579102 ( 94) GGTCACAC 1 chr2R:16783613-16783733 ( 58) GGTCACAC 1 chrX:647227-647347 ( 79) GGTCACAC 1 chr3L:4626682-4626802 ( 53) GGTCACAC 1 chr2R:12138709-12138829 ( 42) GGTCACAC 1 chr3R:12705068-12705188 ( 23) GGTCACAC 1 chr2L:4955449-4955569 ( 68) GGTCACAC 1 chr2R:15682685-15682805 ( 25) GGTCACAC 1 chr3R:31617928-31618048 ( 56) GGTCACAC 1 chr3R:20635338-20635458 ( 61) GGTCACAC 1 chr2L:3452382-3452502 ( 84) GGTCACAC 1 chr2L:20682320-20682440 ( 46) GGTCACAC 1 chr3L:19261385-19261505 ( 43) GGTCACAC 1 chr2R:16001654-16001774 ( 92) GGTCACAC 1 chr3R:4484988-4485108 ( 33) GGTCACAC 1 chr3L:3042315-3042435 ( 69) GGTCACAC 1 chr2L:6658471-6658591 ( 51) GGTCACAC 1 chr2L:20104595-20104715 ( 104) GGTCACAC 1 chr3R:24851531-24851651 ( 68) GGTCACAC 1 chrX:15769598-15769718 ( 63) GGTCACAC 1 chr3L:18745794-18745914 ( 53) GGTCACAC 1 chr3R:23924358-23924478 ( 43) GGTCACAC 1 chr3L:3169255-3169375 ( 38) GGTCACAC 1 chrX:15788765-15788885 ( 93) GGTCACAC 1 chr3L:4003394-4003514 ( 65) GGTCACAC 1 chr2R:20870689-20870809 ( 42) GGTCACAC 1 chr2R:16957426-16957546 ( 35) GGTCACAC 1 chr3L:4277889-4278009 ( 77) GGTCACAC 1 chr3R:22741112-22741232 ( 49) GGCCACAC 1 chr3R:17546441-17546561 ( 96) GGCCACAC 1 chr3R:13683178-13683298 ( 98) GGCCACAC 1 chr2R:12636131-12636251 ( 76) GGCCACAC 1 chr3R:27272432-27272552 ( 69) GGCCACAC 1 chr2L:13790923-13791043 ( 34) GGCCACAC 1 chr3L:21823385-21823505 ( 77) GGCCACAC 1 chr3R:9551976-9552096 ( 61) GGCCACAC 1 chr2R:23357337-23357457 ( 82) GGGCACAC 1 chr3R:29933214-29933334 ( 99) GGGCACAC 1 chr3L:11795538-11795658 ( 70) GGGCACAC 1 chr3R:25023225-25023345 ( 46) GGGCACAC 1 chr2L:13179181-13179301 ( 47) GGGCACAC 1 chr2R:8170209-8170329 ( 34) GGGCACAC 1 chr3L:7369785-7369905 ( 57) GGTCACTC 1 chr2R:8625409-8625529 ( 50) GGTCACTC 1 chrX:23082641-23082761 ( 98) GGTCACTC 1 chr3R:5219570-5219690 ( 95) GGTCACTC 1 chr3L:7238525-7238645 ( 35) GGTCACTC 1 chr3L:4318714-4318834 ( 46) GGTCATAC 1 chr2L:1080902-1081022 ( 25) GGTCATAC 1 chr2R:20643969-20644089 ( 90) GGTCATAC 1 chr3R:15328225-15328345 ( 78) GGTCATAC 1 chr2R:23752663-23752783 ( 98) GGTCATAC 1 chr2L:14334068-14334188 ( 74) GGTCATAC 1 chr3L:4103517-4103637 ( 58) GGTCATAC 1 chrX:19730959-19731079 ( 61) GGTCGCAC 1 chr2R:11293134-11293254 ( 98) GGTAACAC 1 chr3L:20129085-20129205 ( 82) GGTAACAC 1 chr3R:9748055-9748175 ( 94) GGTAACAC 1 chr3R:24922423-24922543 ( 57) GGTAACAC 1 chr3R:29816408-29816528 ( 87) GGTCGCAC 1 chr2L:8740624-8740744 ( 76) GGTAACAC 1 chr3L:16587104-16587224 ( 4) GGTCACAT 1 chr3L:21635304-21635424 ( 8) GGTCACAT 1 chr2L:13827718-13827838 ( 85) GGTCACAT 1 chrX:18650410-18650530 ( 65) GGTCACGC 1 chrX:20393709-20393829 ( 89) GGTCACCC 1 chr2L:10056799-10056919 ( 85) GTTCACAC 1 chr3R:19027274-19027394 ( 84) GTTCACAC 1 chr2L:292401-292521 ( 10) GGCCACTC 1 chr3L:12267420-12267540 ( 97) GGGCACTC 1 chr3L:15504752-15504872 ( 52) CGTCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.33748 E= 1.5e-109 -1314 -415 230 -1314 -1314 -1314 228 -375 -1314 -98 -137 146 -244 226 -1314 -1314 170 -1314 -318 -1314 -1314 222 -1314 -195 158 -415 -418 -195 -1314 229 -1314 -317 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.5e-109 0.000000 0.011111 0.988889 0.000000 0.000000 0.000000 0.977778 0.022222 0.000000 0.100000 0.077778 0.822222 0.055556 0.944444 0.000000 0.000000 0.977778 0.000000 0.022222 0.000000 0.000000 0.922222 0.000000 0.077778 0.900000 0.011111 0.011111 0.077778 0.000000 0.966667 0.000000 0.033333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 13.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATACC MEME-3 width = 8 sites = 66 llr = 573 E-value = 6.8e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8a7a:a:: pos.-specific C ::::::a8 probability G :::::::: matrix T 1:3:a::2 bits 2.3 * 2.1 * 1.9 * 1.6 * **** Relative 1.4 * ***** Entropy 1.2 * ***** (12.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAATACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18612229-18612349 70 2.91e-05 TTACATTTTG AAAATACC AAAAAATCGC chr2L:1080902-1081022 6 2.91e-05 AAAGT AAAATACC TTATCAGTTG chrX:19730959-19731079 23 2.91e-05 CTAAACAGAA AAAATACC AGCGCTTCGA chr3L:9487744-9487864 84 2.91e-05 GTTTAGCCAC AAAATACC ACAGACTAAA chr2L:12002192-12002312 106 2.91e-05 GACCACACAA AAAATACC AAAAAAA chrX:6350344-6350464 41 2.91e-05 GGGGCAGGGT AAAATACC AAGTAGTGAC chr2R:8891378-8891498 92 2.91e-05 ACTGGTCTAT AAAATACC AGAAGAAAAG chr3R:23126349-23126469 79 2.91e-05 AGGTTCGCTA AAAATACC TCCTCTCGAA chr2R:11293134-11293254 45 2.91e-05 AGCAGTCCCC AAAATACC CAACGGAATC chr3L:211389-211509 92 2.91e-05 ATACGTTTTA AAAATACC TCCTGGGATT chr2L:4818197-4818317 44 2.91e-05 GCATTGGTGC AAAATACC AAAGCGCGCA chrX:6276666-6276786 95 2.91e-05 CTGGTCACAC AAAATACC CCAAATATAC chr2L:4967729-4967849 98 2.91e-05 GGGGATCTAA AAAATACC GTTAATCAAG chrX:4548761-4548881 63 2.91e-05 GTTGTTGCGA AAAATACC AGAATTTAGG chr3R:25065542-25065662 69 2.91e-05 TCAGGGGCAC AAAATACC ATTCCGTGAA chr2R:9822891-9823011 81 2.91e-05 ATTGTGGCTG AAAATACC ACACCGCTTT chrX:22540343-22540463 91 2.91e-05 TTGTAGAGTA AAAATACC AAAAATGGCT chrX:18379883-18380003 24 2.91e-05 AGCTAAGCTG AAAATACC AGTAGCTTAA chr3R:19027274-19027394 30 2.91e-05 AAATACCGAA AAAATACC GCATCGAGTG chr3R:27947970-27948090 83 2.91e-05 GGCTCGGGTG AAAATACC AGCACAAGTC chr3L:12399257-12399377 78 2.91e-05 GTACCTTTAG AAAATACC ACCAACATTC chr2L:16902142-16902262 93 2.91e-05 TTGACCGTTA AAAATACC ATGCGTTCAA chr2R:24775164-24775284 103 2.91e-05 ATAACGATTA AAAATACC GTACGGCTGA chrX:22482023-22482143 23 2.91e-05 ACGGCGAAGG AAAATACC ATCCGGCGCA chr3R:4748989-4749109 88 2.91e-05 CAGCAGGGAA AAAATACC AGAGGGCAAA chr2L:10206902-10207022 96 2.91e-05 ATGCGCGTCG AAAATACC AAAAAAGAGC chr3L:21941776-21941896 62 2.91e-05 GGGACTTCTT AAAATACC GATGCATTTT chr3R:13958735-13958855 66 2.91e-05 CGCAGAGAAA AAAATACC GAACAAAAAA chrX:21605226-21605346 78 2.91e-05 AACTTAGCAA AAAATACC AACCCTACTA chr3L:7654689-7654809 112 5.80e-05 TGAATACCGT AATATACC A chr2R:19283895-19284015 83 5.80e-05 TCATTGAGAA AATATACC ACCGGACACT chr3L:12193608-12193728 75 5.80e-05 GTTCCTGAGC AATATACC AAGAACAGTA chr2L:6920158-6920278 56 5.80e-05 ACTCGCTAAA AATATACC AAAAGTTATG chr3R:13271950-13272070 79 5.80e-05 TCCCGATTAG AATATACC GCACAGTCTC chr3R:12691449-12691569 47 5.80e-05 CCACCGCTTG AATATACC ATGAATAAAA chr3R:22468137-22468257 89 5.80e-05 ATCAAAAGTA AATATACC AAAAAACTAA chr3R:30177624-30177744 91 5.80e-05 GAGTTTACTG AATATACC AATAAAATAC chr2R:24875793-24875913 104 5.80e-05 ATTTAAACGT AATATACC GATTCTAGT chrX:9158463-9158583 74 5.80e-05 AATATATACA AATATACC AGAAGGAATT chr2R:21616781-21616901 108 5.80e-05 GGTCTGCGCA AATATACC AACAT chrX:16800648-16800768 82 5.80e-05 GACCCTCGAA AATATACC AACACAAAAG chr2L:6945238-6945358 88 1.31e-04 TGAATGCGAA AAAATACT GTTTCAACAC chrX:16803585-16803705 87 1.31e-04 AAGAATATAC TAAATACC AAAATAACAC chrX:16553909-16554029 92 1.31e-04 ACACCGAAAA TAAATACC AGAACCGTTT chr2L:16738344-16738464 63 1.31e-04 ATGTGCCCGC AAAATACT GGCAAGGCCG chrX:647227-647347 6 1.31e-04 TGCAG TAAATACC ATCGATACCA chr2R:17865931-17866051 98 1.31e-04 ATTCTTGTGG AAAATACT AAACTTCCAT chr2R:12571970-12572090 32 1.31e-04 AGCCCTCCAT AAAATACT AAGTTGCCGA chr3L:6756471-6756591 62 1.31e-04 GCAGACCCCT TAAATACC AAGGTAACAT chr2L:7409725-7409845 94 1.31e-04 AAGACAACCA AAAATACT TTAGTTTGCT chr3L:5561520-5561640 105 1.31e-04 GGCCACAAAA TAAATACC AAATGCTA chr3L:9972192-9972312 3 1.31e-04 TT AAAATACT TTTTAAACGT chr2L:8740624-8740744 57 1.31e-04 TGGAACGGCG AAAATACT ATCGAGTATT chr2L:9253053-9253173 102 1.31e-04 CGACCGATTG AAAATACT AGAAATATTT chr2L:12048887-12049007 91 1.31e-04 ACGGTGTATT AAAATACT GACTAGTATT chr3L:22171-22291 67 1.31e-04 GGGTTGTGTA AAAATACT GAGGACAGAC chr2R:23357337-23357457 47 1.50e-04 TGTGTGGCTC GAAATACC AAACATTTAA chr3R:16273828-16273948 91 1.50e-04 CATACCAAAA GAAATACC GCAGTTTCGT chr2L:8040987-8041107 47 1.50e-04 AGTTACGTGA GAAATACC AAATTTTTGG chrX:9149173-9149293 104 2.23e-04 TATTCCGCTA TATATACC AATTCCCGG chr3L:13389958-13390078 107 2.23e-04 TTGCCCGATA AATATACT GAATGA chr3R:24851531-24851651 24 2.23e-04 TTTGAAATAG TATATACC CGCATTTTCA chr3L:4003394-4003514 13 2.23e-04 TAATGCCGAA TATATACC AACGAATCGG chr2R:20870689-20870809 56 2.23e-04 ACACTGACTA AATATACT AGATTGCTGA chr3R:29491062-29491182 93 2.23e-04 AGGGGATGAG AATATACT GGAATTTGGA chr2R:22127467-22127587 51 3.06e-04 GTTTAGAGCC AAAATGCC GCGCGAACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18612229-18612349 2.9e-05 69_[+3]_43 chr2L:1080902-1081022 2.9e-05 5_[+3]_107 chrX:19730959-19731079 2.9e-05 22_[+3]_90 chr3L:9487744-9487864 2.9e-05 83_[+3]_29 chr2L:12002192-12002312 2.9e-05 105_[+3]_7 chrX:6350344-6350464 2.9e-05 40_[+3]_72 chr2R:8891378-8891498 2.9e-05 91_[+3]_21 chr3R:23126349-23126469 2.9e-05 78_[+3]_34 chr2R:11293134-11293254 2.9e-05 44_[+3]_68 chr3L:211389-211509 2.9e-05 91_[+3]_21 chr2L:4818197-4818317 2.9e-05 43_[+3]_69 chrX:6276666-6276786 2.9e-05 94_[+3]_18 chr2L:4967729-4967849 2.9e-05 97_[+3]_15 chrX:4548761-4548881 2.9e-05 62_[+3]_50 chr3R:25065542-25065662 2.9e-05 68_[+3]_44 chr2R:9822891-9823011 2.9e-05 80_[+3]_32 chrX:22540343-22540463 2.9e-05 90_[+3]_22 chrX:18379883-18380003 2.9e-05 23_[+3]_89 chr3R:19027274-19027394 2.9e-05 29_[+3]_83 chr3R:27947970-27948090 2.9e-05 82_[+3]_30 chr3L:12399257-12399377 2.9e-05 77_[+3]_35 chr2L:16902142-16902262 2.9e-05 92_[+3]_20 chr2R:24775164-24775284 2.9e-05 102_[+3]_10 chrX:22482023-22482143 2.9e-05 22_[+3]_90 chr3R:4748989-4749109 2.9e-05 87_[+3]_25 chr2L:10206902-10207022 2.9e-05 95_[+3]_17 chr3L:21941776-21941896 2.9e-05 61_[+3]_51 chr3R:13958735-13958855 2.9e-05 65_[+3]_47 chrX:21605226-21605346 2.9e-05 77_[+3]_35 chr3L:7654689-7654809 5.8e-05 111_[+3]_1 chr2R:19283895-19284015 5.8e-05 82_[+3]_30 chr3L:12193608-12193728 5.8e-05 74_[+3]_38 chr2L:6920158-6920278 5.8e-05 55_[+3]_57 chr3R:13271950-13272070 5.8e-05 78_[+3]_34 chr3R:12691449-12691569 5.8e-05 46_[+3]_66 chr3R:22468137-22468257 5.8e-05 88_[+3]_24 chr3R:30177624-30177744 5.8e-05 90_[+3]_22 chr2R:24875793-24875913 5.8e-05 103_[+3]_9 chrX:9158463-9158583 5.8e-05 73_[+3]_39 chr2R:21616781-21616901 5.8e-05 107_[+3]_5 chrX:16800648-16800768 5.8e-05 81_[+3]_31 chr2L:6945238-6945358 0.00013 87_[+3]_25 chrX:16803585-16803705 0.00013 86_[+3]_26 chrX:16553909-16554029 0.00013 91_[+3]_21 chr2L:16738344-16738464 0.00013 62_[+3]_50 chrX:647227-647347 0.00013 5_[+3]_107 chr2R:17865931-17866051 0.00013 97_[+3]_15 chr2R:12571970-12572090 0.00013 31_[+3]_81 chr3L:6756471-6756591 0.00013 61_[+3]_51 chr2L:7409725-7409845 0.00013 93_[+3]_19 chr3L:5561520-5561640 0.00013 104_[+3]_8 chr3L:9972192-9972312 0.00013 2_[+3]_110 chr2L:8740624-8740744 0.00013 56_[+3]_56 chr2L:9253053-9253173 0.00013 101_[+3]_11 chr2L:12048887-12049007 0.00013 90_[+3]_22 chr3L:22171-22291 0.00013 66_[+3]_46 chr2R:23357337-23357457 0.00015 46_[+3]_66 chr3R:16273828-16273948 0.00015 90_[+3]_22 chr2L:8040987-8041107 0.00015 46_[+3]_66 chrX:9149173-9149293 0.00022 103_[+3]_9 chr3L:13389958-13390078 0.00022 106_[+3]_6 chr3R:24851531-24851651 0.00022 23_[+3]_89 chr3L:4003394-4003514 0.00022 12_[+3]_100 chr2R:20870689-20870809 0.00022 55_[+3]_57 chr3R:29491062-29491182 0.00022 92_[+3]_20 chr2R:22127467-22127587 0.00031 50_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATACC width=8 seqs=66 chr2L:18612229-18612349 ( 70) AAAATACC 1 chr2L:1080902-1081022 ( 6) AAAATACC 1 chrX:19730959-19731079 ( 23) AAAATACC 1 chr3L:9487744-9487864 ( 84) AAAATACC 1 chr2L:12002192-12002312 ( 106) AAAATACC 1 chrX:6350344-6350464 ( 41) AAAATACC 1 chr2R:8891378-8891498 ( 92) AAAATACC 1 chr3R:23126349-23126469 ( 79) AAAATACC 1 chr2R:11293134-11293254 ( 45) AAAATACC 1 chr3L:211389-211509 ( 92) AAAATACC 1 chr2L:4818197-4818317 ( 44) AAAATACC 1 chrX:6276666-6276786 ( 95) AAAATACC 1 chr2L:4967729-4967849 ( 98) AAAATACC 1 chrX:4548761-4548881 ( 63) AAAATACC 1 chr3R:25065542-25065662 ( 69) AAAATACC 1 chr2R:9822891-9823011 ( 81) AAAATACC 1 chrX:22540343-22540463 ( 91) AAAATACC 1 chrX:18379883-18380003 ( 24) AAAATACC 1 chr3R:19027274-19027394 ( 30) AAAATACC 1 chr3R:27947970-27948090 ( 83) AAAATACC 1 chr3L:12399257-12399377 ( 78) AAAATACC 1 chr2L:16902142-16902262 ( 93) AAAATACC 1 chr2R:24775164-24775284 ( 103) AAAATACC 1 chrX:22482023-22482143 ( 23) AAAATACC 1 chr3R:4748989-4749109 ( 88) AAAATACC 1 chr2L:10206902-10207022 ( 96) AAAATACC 1 chr3L:21941776-21941896 ( 62) AAAATACC 1 chr3R:13958735-13958855 ( 66) AAAATACC 1 chrX:21605226-21605346 ( 78) AAAATACC 1 chr3L:7654689-7654809 ( 112) AATATACC 1 chr2R:19283895-19284015 ( 83) AATATACC 1 chr3L:12193608-12193728 ( 75) AATATACC 1 chr2L:6920158-6920278 ( 56) AATATACC 1 chr3R:13271950-13272070 ( 79) AATATACC 1 chr3R:12691449-12691569 ( 47) AATATACC 1 chr3R:22468137-22468257 ( 89) AATATACC 1 chr3R:30177624-30177744 ( 91) AATATACC 1 chr2R:24875793-24875913 ( 104) AATATACC 1 chrX:9158463-9158583 ( 74) AATATACC 1 chr2R:21616781-21616901 ( 108) AATATACC 1 chrX:16800648-16800768 ( 82) AATATACC 1 chr2L:6945238-6945358 ( 88) AAAATACT 1 chrX:16803585-16803705 ( 87) TAAATACC 1 chrX:16553909-16554029 ( 92) TAAATACC 1 chr2L:16738344-16738464 ( 63) AAAATACT 1 chrX:647227-647347 ( 6) TAAATACC 1 chr2R:17865931-17866051 ( 98) AAAATACT 1 chr2R:12571970-12572090 ( 32) AAAATACT 1 chr3L:6756471-6756591 ( 62) TAAATACC 1 chr2L:7409725-7409845 ( 94) AAAATACT 1 chr3L:5561520-5561640 ( 105) TAAATACC 1 chr3L:9972192-9972312 ( 3) AAAATACT 1 chr2L:8740624-8740744 ( 57) AAAATACT 1 chr2L:9253053-9253173 ( 102) AAAATACT 1 chr2L:12048887-12049007 ( 91) AAAATACT 1 chr3L:22171-22291 ( 67) AAAATACT 1 chr2R:23357337-23357457 ( 47) GAAATACC 1 chr3R:16273828-16273948 ( 91) GAAATACC 1 chr2L:8040987-8041107 ( 47) GAAATACC 1 chrX:9149173-9149293 ( 104) TATATACC 1 chr3L:13389958-13390078 ( 107) AATATACT 1 chr3R:24851531-24851651 ( 24) TATATACC 1 chr3L:4003394-4003514 ( 13) TATATACC 1 chr2R:20870689-20870809 ( 56) AATATACT 1 chr3R:29491062-29491182 ( 93) AATATACT 1 chr2R:22127467-22127587 ( 51) AAAATGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.506 E= 6.8e-033 147 -1269 -215 -131 173 -1269 -1269 -1269 127 -1269 -1269 -14 173 -1269 -1269 -1269 -1269 -1269 -1269 174 171 -1269 -373 -1269 -1269 234 -1269 -1269 -1269 202 -1269 -61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 6.8e-033 0.833333 0.000000 0.045455 0.121212 1.000000 0.000000 0.000000 0.000000 0.727273 0.000000 0.000000 0.272727 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.984848 0.000000 0.015152 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.803030 0.000000 0.196970 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 regular expression -------------------------------------------------------------------------------- AA[AT]ATACC -------------------------------------------------------------------------------- Time 18.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGTATTT MEME-4 width = 8 sites = 27 llr = 252 E-value = 2.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a:2: pos.-specific C 1::1:::: probability G :aa::::: matrix T 9::9:a8a bits 2.3 ** 2.1 ** 1.9 ** 1.6 ** ** * Relative 1.4 ****** * Entropy 1.2 ****** * (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGTATTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24574436-24574556 73 2.96e-05 CAAAGAATTT TGGTATTT TTTTTTAACT chr3R:25065743-25065863 39 2.96e-05 CTTGAAAGTG TGGTATTT TATGCACGTA chr2R:7440663-7440783 40 2.96e-05 TCCTTTGGCT TGGTATTT TATTTTTACA chr3R:27681975-27682095 101 2.96e-05 TATTCTTGCT TGGTATTT TTAGATTTTA chr2R:16783613-16783733 33 2.96e-05 TTTTCGTGAG TGGTATTT CAAGCCAAAA chr3L:11164919-11165039 11 2.96e-05 TTGAATGTTG TGGTATTT TAGTTGAGTA chr3L:13997165-13997285 18 2.96e-05 TTGCGCCAAT TGGTATTT TTCTGTTTTG chr3R:29933214-29933334 73 2.96e-05 CGGGGCGTTT TGGTATTT CAGGAGGATT chr2L:3452382-3452502 27 2.96e-05 AATGGTGTTC TGGTATTT TTGTAACACT chr2R:12571970-12572090 63 2.96e-05 ATCGAGATTT TGGTATTT CTCAATGGCC chr3L:3042315-3042435 50 2.96e-05 AACGACAGTA TGGTATTT TTGCGTATTA chr3R:24851531-24851651 49 2.96e-05 TCAATGCCAA TGGTATTT TGTACCGAAA chr3R:25023225-25023345 21 2.96e-05 TTCTACGTTA TGGTATTT TTAAACGGTT chr3L:7238525-7238645 9 2.96e-05 GCCATTTC TGGTATTT CAGTGAATGT chr2L:15005638-15005758 65 2.96e-05 GCGTTACATT TGGTATTT TACCAACTAT chr3R:15268572-15268692 66 2.96e-05 TAAGGCGTTT TGGTATTT CGCACGAAAG chr3L:4318714-4318834 20 5.92e-05 TCCAGCTACA TGGTATAT TTCGAACCCA chr2L:4968908-4969028 87 5.92e-05 TTAGTTAGTT TGGTATAT TTTGGTATTA chr2L:6658471-6658591 14 5.92e-05 TCTGGACATT TGGTATAT TTTAGTGAGC chrX:927970-928090 81 5.92e-05 GGCATGTCTT TGGTATAT AATGTGTGTC chr3L:18745794-18745914 13 5.92e-05 TACAACTTTT TGGTATAT TTATATTTTT chrX:18137088-18137208 53 9.82e-05 CATACTGGTT CGGTATTT TTAAGAAGAA chrX:11578982-11579102 11 9.82e-05 ATATTTTATT CGGTATTT TCGCAGTCAT chr2L:14334068-14334188 49 9.82e-05 TTCATTTGTT TGGCATTT TGGTGTCGTC chr2R:7445682-7445802 1 9.82e-05 . TGGCATTT AGCATTATTC chr3R:24922423-24922543 107 9.82e-05 TGAATATCAT TGGCATTT TATTTT chrX:9247268-9247388 95 9.82e-05 AGTGTATTAA CGGTATTT GGTAATCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24574436-24574556 3e-05 72_[+4]_40 chr3R:25065743-25065863 3e-05 38_[+4]_74 chr2R:7440663-7440783 3e-05 39_[+4]_73 chr3R:27681975-27682095 3e-05 100_[+4]_12 chr2R:16783613-16783733 3e-05 32_[+4]_80 chr3L:11164919-11165039 3e-05 10_[+4]_102 chr3L:13997165-13997285 3e-05 17_[+4]_95 chr3R:29933214-29933334 3e-05 72_[+4]_40 chr2L:3452382-3452502 3e-05 26_[+4]_86 chr2R:12571970-12572090 3e-05 62_[+4]_50 chr3L:3042315-3042435 3e-05 49_[+4]_63 chr3R:24851531-24851651 3e-05 48_[+4]_64 chr3R:25023225-25023345 3e-05 20_[+4]_92 chr3L:7238525-7238645 3e-05 8_[+4]_104 chr2L:15005638-15005758 3e-05 64_[+4]_48 chr3R:15268572-15268692 3e-05 65_[+4]_47 chr3L:4318714-4318834 5.9e-05 19_[+4]_93 chr2L:4968908-4969028 5.9e-05 86_[+4]_26 chr2L:6658471-6658591 5.9e-05 13_[+4]_99 chrX:927970-928090 5.9e-05 80_[+4]_32 chr3L:18745794-18745914 5.9e-05 12_[+4]_100 chrX:18137088-18137208 9.8e-05 52_[+4]_60 chrX:11578982-11579102 9.8e-05 10_[+4]_102 chr2L:14334068-14334188 9.8e-05 48_[+4]_64 chr2R:7445682-7445802 9.8e-05 [+4]_112 chr3R:24922423-24922543 9.8e-05 106_[+4]_6 chrX:9247268-9247388 9.8e-05 94_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGTATTT width=8 seqs=27 chr2R:24574436-24574556 ( 73) TGGTATTT 1 chr3R:25065743-25065863 ( 39) TGGTATTT 1 chr2R:7440663-7440783 ( 40) TGGTATTT 1 chr3R:27681975-27682095 ( 101) TGGTATTT 1 chr2R:16783613-16783733 ( 33) TGGTATTT 1 chr3L:11164919-11165039 ( 11) TGGTATTT 1 chr3L:13997165-13997285 ( 18) TGGTATTT 1 chr3R:29933214-29933334 ( 73) TGGTATTT 1 chr2L:3452382-3452502 ( 27) TGGTATTT 1 chr2R:12571970-12572090 ( 63) TGGTATTT 1 chr3L:3042315-3042435 ( 50) TGGTATTT 1 chr3R:24851531-24851651 ( 49) TGGTATTT 1 chr3R:25023225-25023345 ( 21) TGGTATTT 1 chr3L:7238525-7238645 ( 9) TGGTATTT 1 chr2L:15005638-15005758 ( 65) TGGTATTT 1 chr3R:15268572-15268692 ( 66) TGGTATTT 1 chr3L:4318714-4318834 ( 20) TGGTATAT 1 chr2L:4968908-4969028 ( 87) TGGTATAT 1 chr2L:6658471-6658591 ( 14) TGGTATAT 1 chrX:927970-928090 ( 81) TGGTATAT 1 chr3L:18745794-18745914 ( 13) TGGTATAT 1 chrX:18137088-18137208 ( 53) CGGTATTT 1 chrX:11578982-11579102 ( 11) CGGTATTT 1 chr2L:14334068-14334188 ( 49) TGGCATTT 1 chr2R:7445682-7445802 ( 1) TGGCATTT 1 chr3R:24922423-24922543 ( 107) TGGCATTT 1 chrX:9247268-9247388 ( 95) CGGTATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5992 E= 2.0e-002 -1140 -83 -1140 157 -1140 -1140 231 -1140 -1140 -1140 231 -1140 -1140 -83 -1140 157 173 -1140 -1140 -1140 -1140 -1140 -1140 174 -70 -1140 -1140 144 -1140 -1140 -1140 174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.0e-002 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.185185 0.000000 0.000000 0.814815 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 regular expression -------------------------------------------------------------------------------- TGGTATTT -------------------------------------------------------------------------------- Time 24.64 secs. ******************************************************************************** ******************************************************************************** MOTIF RHCAGCTG MEME-5 width = 8 sites = 41 llr = 344 E-value = 9.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 42:9::1: pos.-specific C 12a::a:1 probability G 52:1a::9 matrix T :4::::9: bits 2.3 * ** 2.1 * ** 1.9 * ** 1.6 * ** * Relative 1.4 **** * Entropy 1.2 ****** (12.1 bits) 0.9 ****** 0.7 * ****** 0.5 * ****** 0.2 * ****** 0.0 -------- Multilevel GTCAGCTG consensus AA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23402254-23402374 41 8.62e-06 GTTGATAGAG GTCAGCTG TTAGAGTGGC chr2L:292401-292521 22 8.62e-06 CCACTCTCTT GTCAGCTG TGTGGTGCTG chr3L:5927679-5927799 73 1.43e-05 TTTTAGGGTT GCCAGCTG TTTTTTGTTT chr3R:19027274-19027394 60 1.43e-05 TACCCTCTCG GCCAGCTG ACAAATTGCA chrX:22482023-22482143 102 1.43e-05 GTTGAATTCG GCCAGCTG TTTCAAATTA chr2L:18606840-18606960 20 4.17e-05 CGGTCCTATT ATCAGCTG TTTATTTCCA chrX:8121105-8121225 28 4.17e-05 TCTTCTTCAA ATCAGCTG TCCCGGAGTG chrX:6968674-6968794 49 4.17e-05 CACGCGGGCG ATCAGCTG GCCGGCAGTG chr2L:19498078-19498198 39 4.17e-05 CAGCTGGATT GACAGCTG CGCTGCCAAG chr2R:12138709-12138829 52 4.17e-05 GGTCACACTA GACAGCTG ATTTTTTCCA chr3R:30177624-30177744 57 4.17e-05 CTTCGAGTCG ATCAGCTG TTCGGCAGTG chr2L:15005638-15005758 100 4.17e-05 GACCACACAC ATCAGCTG GTCGAAATAT chr2L:13179181-13179301 12 4.17e-05 GTAAACTAAA ATCAGCTG TTTGGTTTGT chr2R:16957426-16957546 48 4.17e-05 CACACTCAGA ATCAGCTG ACTTGGGTGG chr3R:15328225-15328345 15 5.02e-05 TTAACTTATC ACCAGCTG CGACGTACCG chr3L:4003394-4003514 74 5.02e-05 TGGTCACACA ACCAGCTG ATTGCGTTTT chr3R:25065542-25065662 30 5.88e-05 ATATTATTCG AGCAGCTG AAAATAATAT chr3L:11795538-11795658 105 5.88e-05 CAAAGTTAAC AGCAGCTG AGACAAAA chr3R:15268572-15268692 82 5.88e-05 TTCGCACGAA AGCAGCTG CACACACTTC chr2L:4818197-4818317 15 7.18e-05 AAATTAAATA AACAGCTG ATGGACTCAA chrX:23082641-23082761 113 7.18e-05 CTCTCGTTTT AACAGCTG chr3R:22468137-22468257 15 7.18e-05 GATTGATAAG AACAGCTG TAAGTAAACG chr3L:3472247-3472367 46 7.18e-05 AACCTCTGTT AACAGCTG TGAGCAAAAA chr2L:12048887-12049007 48 7.18e-05 AGGACGGCTA AACAGCTG TTCAACAGTG chr3L:9487744-9487864 44 8.03e-05 AGACTGTGAT GTCAGCTC ATGGAAATGC chr2L:16738344-16738464 101 8.03e-05 CAGGCGAGTT GTCAGCTC TGTAGTTTGA chr3L:12267420-12267540 110 1.00e-04 CACTCCGCAA CTCAGCTG ATC chr3L:20129085-20129205 94 1.00e-04 TAACACTGCG CTCAGCTG TTTAGTGACT chr3L:12399257-12399377 50 1.00e-04 TTCAAAACAA GTCGGCTG CAGTGTGGCC chr3L:11164919-11165039 74 1.10e-04 TCCACGCGTT GCCGGCTG GTTGAGTCCA chr3L:4322166-4322286 54 1.10e-04 ATTTTGCTTC GCCGGCTG TTTAAATTAG chr3L:20427581-20427701 103 1.15e-04 TATTCCGATT GGCAGCTC GATAGTCCAC chr3R:23924358-23924478 21 1.15e-04 ATCGATTACG GGCAGCTC CACTTTCCGC chr2R:17748016-17748136 72 1.15e-04 AATGATAGCT GGCAGCTC CACTGGCTAG chr3R:23929316-23929436 52 1.55e-04 GTTTAAAGAG ATCAGCTC GACTAATTAT chr2R:16320626-16320746 20 1.55e-04 CCTGCGTCCT GGCGGCTG ACATCGGATA chr3R:29491062-29491182 40 1.55e-04 TTTGCGGCAC GTCAGCAG CCGAATGGTG chr2R:11293134-11293254 32 1.69e-04 AAAGACTTTC GCCAGCAG TCCCCAAAAT chr3R:4748989-4749109 76 1.69e-04 TGGCCAAATT GCCAGCAG GGAAAAAATA chr3R:13958735-13958855 85 1.92e-04 AACAAAAAAT CACAGCTG GCGTGAAAAA chr3R:17546441-17546561 45 2.52e-04 AAACAAACTT GACAGCAG GGTGTAACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23402254-23402374 8.6e-06 40_[+5]_72 chr2L:292401-292521 8.6e-06 21_[+5]_91 chr3L:5927679-5927799 1.4e-05 72_[+5]_40 chr3R:19027274-19027394 1.4e-05 59_[+5]_53 chrX:22482023-22482143 1.4e-05 101_[+5]_11 chr2L:18606840-18606960 4.2e-05 19_[+5]_93 chrX:8121105-8121225 4.2e-05 27_[+5]_85 chrX:6968674-6968794 4.2e-05 48_[+5]_64 chr2L:19498078-19498198 4.2e-05 38_[+5]_74 chr2R:12138709-12138829 4.2e-05 51_[+5]_61 chr3R:30177624-30177744 4.2e-05 56_[+5]_56 chr2L:15005638-15005758 4.2e-05 99_[+5]_13 chr2L:13179181-13179301 4.2e-05 11_[+5]_101 chr2R:16957426-16957546 4.2e-05 47_[+5]_65 chr3R:15328225-15328345 5e-05 14_[+5]_98 chr3L:4003394-4003514 5e-05 73_[+5]_39 chr3R:25065542-25065662 5.9e-05 29_[+5]_83 chr3L:11795538-11795658 5.9e-05 104_[+5]_8 chr3R:15268572-15268692 5.9e-05 81_[+5]_31 chr2L:4818197-4818317 7.2e-05 14_[+5]_98 chrX:23082641-23082761 7.2e-05 112_[+5] chr3R:22468137-22468257 7.2e-05 14_[+5]_98 chr3L:3472247-3472367 7.2e-05 45_[+5]_67 chr2L:12048887-12049007 7.2e-05 47_[+5]_65 chr3L:9487744-9487864 8e-05 43_[+5]_69 chr2L:16738344-16738464 8e-05 100_[+5]_12 chr3L:12267420-12267540 0.0001 109_[+5]_3 chr3L:20129085-20129205 0.0001 93_[+5]_19 chr3L:12399257-12399377 0.0001 49_[+5]_63 chr3L:11164919-11165039 0.00011 73_[+5]_39 chr3L:4322166-4322286 0.00011 53_[+5]_59 chr3L:20427581-20427701 0.00012 102_[+5]_10 chr3R:23924358-23924478 0.00012 20_[+5]_92 chr2R:17748016-17748136 0.00012 71_[+5]_41 chr3R:23929316-23929436 0.00015 51_[+5]_61 chr2R:16320626-16320746 0.00015 19_[+5]_93 chr3R:29491062-29491182 0.00015 39_[+5]_73 chr2R:11293134-11293254 0.00017 31_[+5]_81 chr3R:4748989-4749109 0.00017 75_[+5]_37 chr3R:13958735-13958855 0.00019 84_[+5]_28 chr3R:17546441-17546561 0.00025 44_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RHCAGCTG width=8 seqs=41 chr2R:23402254-23402374 ( 41) GTCAGCTG 1 chr2L:292401-292521 ( 22) GTCAGCTG 1 chr3L:5927679-5927799 ( 73) GCCAGCTG 1 chr3R:19027274-19027394 ( 60) GCCAGCTG 1 chrX:22482023-22482143 ( 102) GCCAGCTG 1 chr2L:18606840-18606960 ( 20) ATCAGCTG 1 chrX:8121105-8121225 ( 28) ATCAGCTG 1 chrX:6968674-6968794 ( 49) ATCAGCTG 1 chr2L:19498078-19498198 ( 39) GACAGCTG 1 chr2R:12138709-12138829 ( 52) GACAGCTG 1 chr3R:30177624-30177744 ( 57) ATCAGCTG 1 chr2L:15005638-15005758 ( 100) ATCAGCTG 1 chr2L:13179181-13179301 ( 12) ATCAGCTG 1 chr2R:16957426-16957546 ( 48) ATCAGCTG 1 chr3R:15328225-15328345 ( 15) ACCAGCTG 1 chr3L:4003394-4003514 ( 74) ACCAGCTG 1 chr3R:25065542-25065662 ( 30) AGCAGCTG 1 chr3L:11795538-11795658 ( 105) AGCAGCTG 1 chr3R:15268572-15268692 ( 82) AGCAGCTG 1 chr2L:4818197-4818317 ( 15) AACAGCTG 1 chrX:23082641-23082761 ( 113) AACAGCTG 1 chr3R:22468137-22468257 ( 15) AACAGCTG 1 chr3L:3472247-3472367 ( 46) AACAGCTG 1 chr2L:12048887-12049007 ( 48) AACAGCTG 1 chr3L:9487744-9487864 ( 44) GTCAGCTC 1 chr2L:16738344-16738464 ( 101) GTCAGCTC 1 chr3L:12267420-12267540 ( 110) CTCAGCTG 1 chr3L:20129085-20129205 ( 94) CTCAGCTG 1 chr3L:12399257-12399377 ( 50) GTCGGCTG 1 chr3L:11164919-11165039 ( 74) GCCGGCTG 1 chr3L:4322166-4322286 ( 54) GCCGGCTG 1 chr3L:20427581-20427701 ( 103) GGCAGCTC 1 chr3R:23924358-23924478 ( 21) GGCAGCTC 1 chr2R:17748016-17748136 ( 72) GGCAGCTC 1 chr3R:23929316-23929436 ( 52) ATCAGCTC 1 chr2R:16320626-16320746 ( 20) GGCGGCTG 1 chr3R:29491062-29491182 ( 40) GTCAGCAG 1 chr2R:11293134-11293254 ( 32) GCCAGCAG 1 chr3R:4748989-4749109 ( 76) GCCAGCAG 1 chr3R:13958735-13958855 ( 85) CACAGCTG 1 chr3R:17546441-17546561 ( 45) GACAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.70528 E= 9.2e-002 54 -143 128 -1200 -46 15 -24 38 -1200 234 -1200 -1200 158 -1200 -104 -1200 -1200 -1200 231 -1200 -1200 234 -1200 -1200 -163 -1200 -1200 159 -1200 -43 208 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 9.2e-002 0.439024 0.073171 0.487805 0.000000 0.219512 0.219512 0.170732 0.390244 0.000000 1.000000 0.000000 0.000000 0.902439 0.000000 0.097561 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.097561 0.000000 0.000000 0.902439 0.000000 0.146341 0.853659 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHCAGCTG MEME-5 regular expression -------------------------------------------------------------------------------- [GA][TAC]CAGCTG -------------------------------------------------------------------------------- Time 30.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22171-22291 9.13e-02 120 chrX:21605226-21605346 2.69e-03 4_[+1(4.16e-05)]_65_[+3(2.91e-05)]_\ 35 chr3L:4277889-4278009 7.97e-03 76_[+2(8.52e-06)]_36 chr2R:16957426-16957546 6.17e-04 34_[+2(8.52e-06)]_5_[+5(4.17e-05)]_\ 65 chr3R:25235488-25235608 4.18e-02 28_[+1(6.74e-05)]_84 chr2L:20926085-20926205 4.10e-03 55_[+1(1.44e-05)]_57 chr3R:29491062-29491182 3.75e-05 54_[+1(8.62e-06)]_58 chr2R:20870689-20870809 9.91e-03 41_[+2(8.52e-06)]_71 chr3L:16782922-16783042 2.55e-03 45_[+1(8.62e-06)]_67 chr3R:13958735-13958855 7.57e-05 3_[+1(2.01e-05)]_54_[+3(2.91e-05)]_\ 47 chrX:16800648-16800768 9.90e-04 35_[+1(8.62e-06)]_38_[+3(5.80e-05)]_\ 31 chr3R:9015039-9015159 6.27e-01 120 chr2R:8170209-8170329 5.65e-02 33_[+2(1.99e-05)]_79 chr2R:14993765-14993885 3.04e-02 62_[+1(7.32e-05)]_50 chr2L:13179181-13179301 3.89e-03 11_[+5(4.17e-05)]_27_[+2(1.99e-05)]_\ 9_[+5(7.18e-05)]_49 chr2L:12048887-12049007 5.61e-05 47_[+5(7.18e-05)]_7_[+1(8.62e-06)]_\ 50 chr3L:18820954-18821074 1.11e-01 120 chr3L:4322166-4322286 2.03e-01 120 chr3R:15278584-15278704 7.92e-03 98_[+1(8.62e-06)]_14 chr2L:13827718-13827838 1.71e-02 84_[+2(7.28e-05)]_28 chr3R:9015239-9015359 9.48e-03 98_[+1(1.44e-05)]_14 chr3L:21941776-21941896 1.61e-03 37_[+1(1.44e-05)]_16_[+3(2.91e-05)]_\ 51 chr3L:4003394-4003514 2.91e-04 64_[+2(8.52e-06)]_1_[+5(5.02e-05)]_\ 39 chr3R:5733379-5733499 1.64e-01 120 chr2L:10206902-10207022 2.85e-03 77_[+3(2.91e-05)]_10_[+3(2.91e-05)]_\ 17 chr3R:4748989-4749109 1.94e-04 62_[+1(1.44e-05)]_17_[+3(2.91e-05)]_\ 25 chrX:22482023-22482143 3.56e-03 22_[+3(2.91e-05)]_71_[+5(1.43e-05)]_\ 11 chr3R:9551976-9552096 6.55e-02 60_[+2(1.41e-05)]_52 chr2R:24775164-24775284 9.21e-04 78_[+1(8.62e-06)]_16_[+3(2.91e-05)]_\ 10 chr3R:15268572-15268692 2.96e-05 65_[+4(2.96e-05)]_8_[+5(5.88e-05)]_\ 31 chrX:19276823-19276943 1.10e-02 65_[+1(8.62e-06)]_47 chr2R:9964994-9965114 2.88e-02 69_[+1(1.44e-05)]_43 chr2R:17748016-17748136 1.10e-03 88_[+1(8.62e-06)]_24 chr2L:9253053-9253173 2.65e-03 120 chr2L:8740624-8740744 3.14e-06 32_[+1(8.62e-06)]_35_[+2(5.99e-05)]_\ 37 chrX:20393709-20393829 3.89e-04 36_[+1(2.01e-05)]_44_[+2(8.41e-05)]_\ 24 chr3L:21635304-21635424 1.87e-01 7_[+2(7.28e-05)]_105 chrX:16884434-16884554 5.02e-01 120 chr2L:292401-292521 3.08e-03 21_[+5(8.62e-06)]_91 chr2L:15005638-15005758 2.54e-03 64_[+4(2.96e-05)]_27_[+5(4.17e-05)]_\ 13 chrX:15788765-15788885 1.24e-03 92_[+2(8.52e-06)]_20 chr3L:9972192-9972312 5.41e-02 120 chr3L:3169255-3169375 4.16e-03 37_[+2(8.52e-06)]_75 chr2L:8040987-8041107 4.47e-02 120 chr2L:6127596-6127716 3.88e-03 49_[+1(8.62e-06)]_63 chr3R:23924358-23924478 8.61e-03 42_[+2(8.52e-06)]_70 chr3L:7238525-7238645 2.62e-03 8_[+4(2.96e-05)]_18_[+2(2.84e-05)]_\ 78 chr3R:25023225-25023345 8.56e-05 20_[+4(2.96e-05)]_17_[+2(1.99e-05)]_\ 67 chr3L:3472247-3472367 6.59e-03 45_[+5(7.18e-05)]_67 chr3L:18745794-18745914 4.13e-03 12_[+4(5.92e-05)]_32_[+2(8.52e-06)]_\ 60 chrX:15769598-15769718 3.23e-02 62_[+2(8.52e-06)]_50 chr3L:212615-212735 1.30e-02 42_[+1(1.44e-05)]_70 chr3R:24851531-24851651 1.11e-04 48_[+4(2.96e-05)]_11_[+2(8.52e-06)]_\ 45 chr2R:11289749-11289869 3.62e-02 120 chr2L:16902142-16902262 3.30e-03 70_[+1(2.01e-05)]_14_[+3(2.91e-05)]_\ 20 chr3L:4135951-4136071 7.22e-03 84_[+1(1.44e-05)]_28 chr3L:21823385-21823505 2.09e-02 76_[+2(1.41e-05)]_36 chr3R:12678954-12679074 8.26e-01 120 chr3L:16610356-16610476 1.59e-01 56_[+1(4.16e-05)]_56 chr3R:29816408-29816528 1.05e-02 86_[+2(5.99e-05)]_26 chrX:9247268-9247388 4.64e-03 94_[+4(9.82e-05)]_18 chr3R:27695152-27695272 3.91e-02 44_[+1(8.62e-06)]_68 chr3L:1331674-1331794 2.16e-01 120 chr2R:21616781-21616901 8.63e-04 83_[+1(8.62e-06)]_16_[+3(5.80e-05)]_\ 5 chr3R:24357865-24357985 1.83e-02 66_[+1(2.01e-05)]_46 chrX:927970-928090 9.17e-02 80_[+4(5.92e-05)]_32 chr3L:16587104-16587224 5.78e-02 3_[+2(7.28e-05)]_109 chr3L:11795538-11795658 2.25e-03 69_[+2(1.99e-05)]_27_[+5(5.88e-05)]_\ 8 chr2L:20104595-20104715 5.53e-02 41_[+2(2.84e-05)]_17_[+2(1.99e-05)]_\ 29_[+2(8.52e-06)]_9 chr2L:6658471-6658591 6.28e-04 13_[+4(5.92e-05)]_29_[+2(8.52e-06)]_\ 62 chr3R:10767717-10767837 3.33e-01 120 chr3R:27679091-27679211 2.69e-01 120 chr2R:20643763-20643883 1.31e-02 22_[+1(8.62e-06)]_90 chrX:6674291-6674411 7.59e-02 17_[+1(4.16e-05)]_95 chr2L:13790923-13791043 1.87e-02 33_[+2(1.41e-05)]_79 chr3L:3042315-3042435 1.38e-04 49_[+4(2.96e-05)]_11_[+2(8.52e-06)]_\ 44 chr3R:4484988-4485108 4.26e-03 32_[+2(8.52e-06)]_80 chr2R:16001654-16001774 8.47e-04 18_[+4(5.92e-05)]_65_[+2(8.52e-06)]_\ 21 chr2R:12431030-12431150 1.54e-01 46_[+1(6.74e-05)]_66 chrX:9158463-9158583 4.91e-03 33_[+1(1.44e-05)]_32_[+3(5.80e-05)]_\ 39 chr3L:12399257-12399377 2.83e-05 59_[+1(1.44e-05)]_10_[+3(2.91e-05)]_\ 35 chr3R:24922423-24922543 4.11e-03 56_[+2(5.99e-05)]_42_[+4(9.82e-05)]_\ 6 chr3L:5561520-5561640 2.40e-04 58_[+1(1.44e-05)]_54 chr2L:10327916-10328036 1.58e-01 40_[+1(6.74e-05)]_72 chr3R:27947970-27948090 2.57e-04 35_[+1(2.87e-05)]_16_[+3(2.91e-05)]_\ 15_[+3(2.91e-05)]_30 chr3R:19027274-19027394 2.88e-05 18_[+3(2.91e-05)]_3_[+3(2.91e-05)]_\ 22_[+5(1.43e-05)]_53 chr2L:7409725-7409845 5.72e-03 69_[+1(8.62e-06)]_43 chr3L:6756471-6756591 6.38e-04 37_[+1(8.62e-06)]_75 chr3L:19261385-19261505 7.30e-02 42_[+2(8.52e-06)]_70 chr2R:7445682-7445802 1.18e-03 [+4(9.82e-05)]_67_[+1(8.62e-06)]_37 chr3L:15504752-15504872 7.45e-02 120 chr2L:10056799-10056919 2.85e-01 120 chr2R:12571970-12572090 3.59e-03 62_[+4(2.96e-05)]_50 chr2L:20682320-20682440 2.06e-02 45_[+2(8.52e-06)]_67 chr2R:24875793-24875913 6.52e-03 64_[+1(6.74e-05)]_31_[+3(5.80e-05)]_\ 9 chr3R:17040106-17040226 5.54e-02 55_[+1(4.16e-05)]_47_[+1(6.74e-05)]_\ 2 chrX:18379883-18380003 1.21e-01 23_[+3(2.91e-05)]_89 chr3L:16121946-16122066 3.36e-03 28_[+1(8.62e-06)]_84 chr2L:3452382-3452502 8.33e-04 26_[+4(2.96e-05)]_49_[+2(8.52e-06)]_\ 29 chr3R:20635338-20635458 2.93e-02 60_[+2(8.52e-06)]_52 chr2R:17865931-17866051 2.81e-03 2_[+1(8.62e-06)]_110 chrX:12592198-12592318 9.96e-01 120 chr3R:16273828-16273948 3.82e-03 49_[+1(8.62e-06)]_63 chrX:19701687-19701807 3.11e-02 49_[+1(8.62e-06)]_63 chr3R:31617928-31618048 4.73e-03 55_[+2(8.52e-06)]_57 chr3R:27272432-27272552 2.40e-02 68_[+2(1.41e-05)]_44 chr2R:23809028-23809148 4.44e-01 120 chr2R:12636131-12636251 1.42e-02 75_[+2(1.41e-05)]_37 chr3R:29933214-29933334 3.68e-04 72_[+4(2.96e-05)]_18_[+2(1.99e-05)]_\ 14 chr2L:4968908-4969028 2.55e-01 86_[+4(5.92e-05)]_26 chrX:22540343-22540463 1.73e-04 44_[+1(1.44e-05)]_38_[+3(2.91e-05)]_\ 22 chrX:6267181-6267301 8.07e-02 9_[+1(2.01e-05)]_39_[+1(2.01e-05)]_\ 56 chr2R:9822891-9823011 3.73e-03 56_[+1(6.74e-05)]_16_[+3(2.91e-05)]_\ 32 chr2R:15682685-15682805 3.58e-03 24_[+2(8.52e-06)]_88 chr3L:4103517-4103637 1.56e-02 57_[+2(4.13e-05)]_55 chr3R:30177624-30177744 1.11e-04 56_[+5(4.17e-05)]_7_[+1(8.62e-06)]_\ 11_[+3(5.80e-05)]_22 chr3R:22468137-22468257 6.49e-04 14_[+5(7.18e-05)]_66_[+3(5.80e-05)]_\ 24 chr2L:14334068-14334188 9.69e-03 48_[+4(9.82e-05)]_17_[+2(4.13e-05)]_\ 39 chr3L:13997165-13997285 2.68e-02 17_[+4(2.96e-05)]_95 chr3R:5219570-5219690 2.50e-02 94_[+2(2.84e-05)]_18 chrX:17244981-17245101 7.32e-02 87_[+1(2.01e-05)]_25 chr2L:4955449-4955569 2.02e-02 67_[+2(8.52e-06)]_45 chr3R:12705068-12705188 9.42e-03 22_[+2(8.52e-06)]_90 chrX:8142228-8142348 2.44e-02 8_[+1(2.01e-05)]_20_[+1(8.62e-06)]_\ 9_[+1(8.62e-06)]_59 chrX:2713921-2714041 5.73e-02 53_[+1(8.62e-06)]_59 chrX:23082641-23082761 2.12e-03 97_[+2(2.84e-05)]_7_[+5(7.18e-05)] chr3L:8514841-8514961 2.14e-02 67_[+1(6.74e-05)]_45 chr2R:16320626-16320746 3.07e-03 102_[+1(8.62e-06)]_10 chr2R:12138709-12138829 1.60e-03 41_[+2(8.52e-06)]_2_[+5(4.17e-05)]_\ 61 chr2R:8625409-8625529 2.50e-02 49_[+2(2.84e-05)]_63 chrX:18650410-18650530 1.47e-02 32_[+1(8.75e-05)]_24_[+2(8.41e-05)]_\ 48 chr3L:4626682-4626802 3.95e-02 52_[+2(8.52e-06)]_60 chr3R:9748055-9748175 1.01e-01 93_[+2(5.99e-05)]_19 chr3L:11164919-11165039 2.37e-03 10_[+4(2.96e-05)]_102 chr3R:20585746-20585866 8.09e-03 58_[+1(8.62e-06)]_54 chr3R:13683178-13683298 4.01e-03 97_[+2(1.41e-05)]_15 chr3R:12691449-12691569 4.24e-03 6_[+1(6.74e-05)]_32_[+3(5.80e-05)]_\ 66 chrX:647227-647347 3.24e-03 78_[+2(8.52e-06)]_34 chr2R:7447400-7447520 1.14e-02 49_[+1(8.75e-05)]_63 chr3R:25065542-25065662 5.04e-04 29_[+5(5.88e-05)]_31_[+3(2.91e-05)]_\ 44 chr2R:16138612-16138732 5.90e-01 120 chr3L:7369785-7369905 5.32e-02 56_[+2(2.84e-05)]_56 chr2R:16783613-16783733 1.70e-03 32_[+4(2.96e-05)]_17_[+2(8.52e-06)]_\ 55 chr2L:18820-18940 2.94e-02 98_[+1(8.62e-06)]_14 chr3L:5779827-5779947 2.23e-01 120 chr2R:23752663-23752783 1.99e-02 97_[+2(4.13e-05)]_15 chr2L:16738344-16738464 1.24e-04 38_[+1(8.62e-06)]_54_[+5(8.03e-05)]_\ 12 chrX:11578982-11579102 4.14e-06 10_[+4(9.82e-05)]_12_[+1(1.44e-05)]_\ 55_[+2(8.52e-06)]_19 chr2R:16855355-16855475 9.33e-02 104_[+1(2.87e-05)]_8 chr3R:23929316-23929436 8.93e-02 120 chr2R:22127467-22127587 4.13e-03 26_[+1(6.74e-05)]_86 chrX:4548761-4548881 7.79e-05 1_[+1(2.01e-05)]_53_[+3(2.91e-05)]_\ 50 chr2L:4967729-4967849 2.21e-04 45_[+1(8.62e-06)]_44_[+3(2.91e-05)]_\ 15 chr3R:13271950-13272070 3.27e-03 54_[+1(8.62e-06)]_16_[+3(5.80e-05)]_\ 34 chr2R:10897755-10897875 1.67e-02 96_[+1(8.62e-06)]_16 chr2R:23811943-23812063 1.00e-01 26_[+1(2.87e-05)]_86 chr3L:20129085-20129205 6.44e-03 81_[+2(5.99e-05)]_31 chrX:6276666-6276786 9.93e-08 52_[+1(1.44e-05)]_26_[+2(8.52e-06)]_\ [+3(2.91e-05)]_3_[+3(5.80e-05)]_7 chrX:16553909-16554029 3.55e-01 120 chr2R:12184242-12184362 9.02e-04 35_[+1(8.62e-06)]_77 chrX:13822523-13822643 6.68e-01 120 chr3R:12429241-12429361 2.06e-02 35_[+1(8.62e-06)]_77 chr2R:23402254-23402374 1.10e-03 40_[+5(8.62e-06)]_3_[+1(7.32e-05)]_\ 61 chrX:16943091-16943211 5.25e-01 120 chr2R:20287031-20287151 5.80e-03 41_[+1(8.62e-06)]_71 chr3R:15223076-15223196 9.08e-03 80_[+1(8.62e-06)]_32 chr2L:4818197-4818317 5.06e-05 14_[+5(7.18e-05)]_21_[+3(2.91e-05)]_\ 46_[+2(8.52e-06)]_15 chr3R:8723069-8723189 1.28e-01 120 chr3L:211389-211509 8.25e-04 91_[+3(2.91e-05)]_21 chr3L:13389958-13390078 2.60e-02 120 chrX:805961-806081 4.18e-02 51_[+1(4.16e-05)]_61 chrX:4551865-4551985 4.97e-03 21_[+1(8.62e-06)]_91 chr3L:12267420-12267540 3.74e-05 34_[+1(8.62e-06)]_78 chr3L:21529309-21529429 3.01e-01 120 chr3R:27681975-27682095 1.61e-03 23_[+1(8.62e-06)]_69_[+4(2.96e-05)]_\ 12 chr2R:7440663-7440783 1.83e-01 20_[+4(5.92e-05)]_11_[+4(2.96e-05)]_\ 73 chr2L:6476913-6477033 5.48e-01 120 chr3R:24717452-24717572 2.50e-02 66_[+2(8.52e-06)]_46 chr3R:17546441-17546561 1.93e-04 95_[+2(1.41e-05)]_17 chr2R:21719953-21720073 5.20e-02 120 chr3L:12205857-12205977 1.06e-01 120 chr2R:11293134-11293254 4.47e-04 44_[+3(2.91e-05)]_45_[+2(5.99e-05)]_\ 15 chrX:21031924-21032044 7.17e-02 34_[+1(6.74e-05)]_78 chrX:16803585-16803705 6.27e-04 52_[+1(8.62e-06)]_60 chrX:16940758-16940878 5.19e-02 101_[+1(8.62e-06)]_11 chr2L:7063940-7064060 1.95e-03 43_[+2(8.52e-06)]_69 chr2L:6000178-6000298 4.71e-02 58_[+2(8.52e-06)]_54 chr3R:15328225-15328345 6.46e-04 14_[+5(5.02e-05)]_55_[+2(4.13e-05)]_\ 35 chrX:18137088-18137208 1.69e-03 52_[+4(9.82e-05)]_11_[+2(8.52e-06)]_\ 41 chrX:4702271-4702391 1.49e-02 7_[+2(8.52e-06)]_105 chrX:15991927-15992047 1.28e-01 120 chr2L:19498078-19498198 2.81e-03 26_[+5(5.02e-05)]_4_[+5(4.17e-05)]_\ 74 chr2R:13980104-13980224 4.66e-02 97_[+2(8.52e-06)]_15 chr3R:23126349-23126469 3.92e-04 54_[+1(4.16e-05)]_16_[+3(2.91e-05)]_\ 34 chr2L:11989858-11989978 4.66e-03 63_[+2(8.52e-06)]_49 chrX:16800853-16800973 3.79e-01 120 chr2L:472953-473073 2.79e-03 65_[+2(8.52e-06)]_47 chr2R:20643969-20644089 7.55e-02 89_[+2(4.13e-05)]_23 chrX:9149173-9149293 1.40e-01 120 chrX:5421896-5422016 3.51e-02 99_[+2(8.52e-06)]_13 chr2L:16910349-16910469 3.88e-01 120 chr2L:5093927-5094047 1.41e-02 87_[+2(8.52e-06)]_25 chr2R:8952259-8952379 2.40e-02 55_[+2(1.99e-05)]_12_[+2(8.52e-06)]_\ 37 chr2R:8627808-8627928 9.34e-01 120 chr2L:6920158-6920278 6.16e-03 9_[+1(2.87e-05)]_38_[+3(5.80e-05)]_\ 57 chr3L:21941983-21942103 8.90e-01 120 chr2L:6945238-6945358 4.91e-02 120 chr2R:8891378-8891498 1.18e-02 91_[+3(2.91e-05)]_21 chr3R:22741112-22741232 2.91e-04 6_[+1(8.62e-06)]_34_[+2(1.41e-05)]_\ 64 chr3R:24186286-24186406 1.67e-02 28_[+1(8.62e-06)]_84 chr3L:12146376-12146496 6.29e-02 120 chrX:6350344-6350464 3.82e-03 16_[+1(1.44e-05)]_16_[+3(2.91e-05)]_\ 13_[+3(5.80e-05)]_51 chr3L:12193608-12193728 5.20e-04 56_[+1(2.87e-05)]_10_[+3(5.80e-05)]_\ 24_[+3(5.80e-05)]_6 chr2R:23357337-23357457 1.41e-04 81_[+2(1.99e-05)]_31 chr3L:6958272-6958392 6.33e-02 40_[+1(8.62e-06)]_72 chr2L:12002192-12002312 4.49e-03 80_[+1(6.74e-05)]_17_[+3(2.91e-05)]_\ 7 chr3L:9487744-9487864 5.69e-03 43_[+5(8.03e-05)]_32_[+3(2.91e-05)]_\ 29 chrX:6968674-6968794 1.10e-05 48_[+5(4.17e-05)]_7_[+1(1.44e-05)]_\ 34_[+2(8.52e-06)]_7 chr2L:10968113-10968233 1.32e-01 45_[+1(4.16e-05)]_41_[+1(6.74e-05)]_\ 18 chr3L:6756672-6756792 3.30e-01 120 chr3R:25065743-25065863 4.62e-02 38_[+4(2.96e-05)]_74 chr2R:18128369-18128489 2.58e-01 120 chr2R:19283895-19284015 9.14e-05 57_[+1(8.62e-06)]_17_[+3(5.80e-05)]_\ 30 chr2R:18135396-18135516 1.69e-02 26_[+2(8.52e-06)]_86 chrX:19730959-19731079 1.02e-03 22_[+3(2.91e-05)]_30_[+2(5.99e-05)]_\ 52 chrX:3163168-3163288 9.33e-02 64_[+1(8.62e-06)]_48 chr2L:1080902-1081022 2.38e-03 5_[+3(2.91e-05)]_11_[+2(4.13e-05)]_\ 88 chr2R:9400210-9400330 1.64e-01 95_[+1(8.75e-05)]_17 chr3L:11109660-11109780 1.01e-01 30_[+2(8.52e-06)]_82 chr2R:14858586-14858706 1.66e-02 40_[+1(8.62e-06)]_72 chr3R:20816135-20816255 2.90e-02 48_[+1(8.62e-06)]_64 chr3R:25335199-25335319 1.76e-03 22_[+5(7.18e-05)]_36_[+5(7.18e-05)]_\ 14_[+2(8.52e-06)]_24 chr3L:5897390-5897510 2.43e-02 59_[+1(8.62e-06)]_53 chrX:4104353-4104473 1.99e-02 96_[+2(8.52e-06)]_16 chr3L:20427581-20427701 3.65e-02 120 chrX:10212332-10212452 1.89e-03 59_[+1(8.62e-06)]_53 chr2L:8300988-8301108 2.16e-02 69_[+1(8.62e-06)]_43 chrX:8121105-8121225 5.28e-05 27_[+5(4.17e-05)]_7_[+1(8.62e-06)]_\ 70 chrX:8177070-8177190 8.32e-02 120 chr2R:24574436-24574556 1.63e-01 72_[+4(2.96e-05)]_40 chr3L:4318714-4318834 1.35e-02 19_[+4(5.92e-05)]_18_[+2(4.13e-05)]_\ 67 chrX:21028338-21028458 6.56e-03 17_[+1(1.44e-05)]_95 chr3L:5927679-5927799 7.90e-03 72_[+5(1.43e-05)]_40 chr3R:9551774-9551894 2.35e-02 13_[+1(1.44e-05)]_99 chr2L:18606840-18606960 1.08e-01 19_[+5(4.17e-05)]_93 chr3L:7654689-7654809 3.64e-03 50_[+1(8.62e-06)]_53_[+3(5.80e-05)]_\ 1 chr2R:15216138-15216258 1.05e-05 20_[+5(1.43e-05)]_92 chr2L:10976730-10976850 3.65e-02 53_[+2(8.52e-06)]_59 chr3R:5794423-5794543 8.80e-01 120 chr2L:18612229-18612349 2.63e-03 12_[+1(6.74e-05)]_49_[+3(2.91e-05)]_\ 43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************