******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9727.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3378611-3378731 1.0000 120 chr2L:298374-298494 1.0000 120 chr2R:18536433-18536553 1.0000 120 chr3R:31610455-31610575 1.0000 120 chr3L:14961205-14961325 1.0000 120 chr3L:18225170-18225290 1.0000 120 chr3R:10626182-10626302 1.0000 120 chr3R:31704673-31704793 1.0000 120 chrX:457899-458019 1.0000 120 chr3L:15670593-15670713 1.0000 120 chrX:18947002-18947122 1.0000 120 chr3R:31610667-31610787 1.0000 120 chr2L:9990248-9990368 1.0000 120 chrX:9689281-9689401 1.0000 120 chr2R:20091308-20091428 1.0000 120 chr3R:24580521-24580641 1.0000 120 chr3L:15321109-15321229 1.0000 120 chr3R:13799722-13799842 1.0000 120 chr3L:15794441-15794561 1.0000 120 chr3R:19339335-19339455 1.0000 120 chr3R:19935244-19935364 1.0000 120 chr2L:19219539-19219659 1.0000 120 chr3L:3978116-3978236 1.0000 120 chr2R:10196352-10196472 1.0000 120 chr2R:9660235-9660355 1.0000 120 chr2L:7292148-7292268 1.0000 120 chr3L:745671-745791 1.0000 120 chr3L:5630213-5630333 1.0000 120 chr3L:2884593-2884713 1.0000 120 chr2L:14690950-14691070 1.0000 120 chr3L:10847878-10847998 1.0000 120 chr2R:18202727-18202847 1.0000 120 chr2R:18677915-18678035 1.0000 120 chr3R:25184170-25184290 1.0000 120 chr2L:3819068-3819188 1.0000 120 chr3R:13972267-13972387 1.0000 120 chrX:7166479-7166599 1.0000 120 chr3L:21462958-21463078 1.0000 120 chr3R:16718077-16718197 1.0000 120 chr3R:6949465-6949585 1.0000 120 chr2R:9711447-9711567 1.0000 120 chr3R:11368852-11368972 1.0000 120 chr3L:13068413-13068533 1.0000 120 chr2L:7624302-7624422 1.0000 120 chr3L:14978268-14978388 1.0000 120 chr3L:20919003-20919123 1.0000 120 chr3R:29541464-29541584 1.0000 120 chr3L:19179543-19179663 1.0000 120 chr3R:13404961-13405081 1.0000 120 chr3L:15847747-15847867 1.0000 120 chr3L:6981974-6982094 1.0000 120 chr3L:14447076-14447196 1.0000 120 chr3L:15330197-15330317 1.0000 120 chrX:17582045-17582165 1.0000 120 chr3L:13049794-13049914 1.0000 120 chrX:10784788-10784908 1.0000 120 chrX:7552260-7552380 1.0000 120 chr3L:18349466-18349586 1.0000 120 chr3L:11439720-11439840 1.0000 120 chr2L:18871848-18871968 1.0000 120 chr2L:3601004-3601124 1.0000 120 chr2R:14312315-14312435 1.0000 120 chrX:8830211-8830331 1.0000 120 chrX:5086028-5086148 1.0000 120 chr2R:11970355-11970475 1.0000 120 chr3L:11306280-11306400 1.0000 120 chr3L:22130324-22130444 1.0000 120 chr3L:20623684-20623804 1.0000 120 chr3L:19899045-19899165 1.0000 120 chr3L:18297487-18297607 1.0000 120 chr2L:7293596-7293716 1.0000 120 chrX:17510611-17510731 1.0000 120 chr3R:10641369-10641489 1.0000 120 chr3R:15652740-15652860 1.0000 120 chrX:8445078-8445198 1.0000 120 chr2L:19285619-19285739 1.0000 120 chr2L:7339745-7339865 1.0000 120 chr3R:5413125-5413245 1.0000 120 chr3R:22526483-22526603 1.0000 120 chr2R:18963341-18963461 1.0000 120 chr3L:16640635-16640755 1.0000 120 chrX:16275901-16276021 1.0000 120 chr3R:23133679-23133799 1.0000 120 chr3L:3449769-3449889 1.0000 120 chr3R:16801113-16801233 1.0000 120 chr2L:9595060-9595180 1.0000 120 chr3R:14589608-14589728 1.0000 120 chr2R:9703357-9703477 1.0000 120 chr2R:18209842-18209962 1.0000 120 chrX:17830433-17830553 1.0000 120 chr3L:13403152-13403272 1.0000 120 chr2L:11326451-11326571 1.0000 120 chr3L:1431736-1431856 1.0000 120 chr2R:15100636-15100756 1.0000 120 chr3R:23345102-23345222 1.0000 120 chr3L:14956429-14956549 1.0000 120 chr2L:3805386-3805506 1.0000 120 chr3R:23303392-23303512 1.0000 120 chr3L:5857022-5857142 1.0000 120 chr3R:8336319-8336439 1.0000 120 chrX:7901540-7901660 1.0000 120 chrX:18208509-18208629 1.0000 120 chr3L:10849609-10849729 1.0000 120 chr3R:21420079-21420199 1.0000 120 chr3R:20829518-20829638 1.0000 120 chr3L:15693188-15693308 1.0000 120 chr3L:7862868-7862988 1.0000 120 chr3L:11253378-11253498 1.0000 120 chr3L:3983513-3983633 1.0000 120 chr3R:16771735-16771855 1.0000 120 chr3L:7953074-7953194 1.0000 120 chr3R:19627926-19628046 1.0000 120 chrX:3367418-3367538 1.0000 120 chr3R:15644898-15645018 1.0000 120 chr3R:13713604-13713724 1.0000 120 chrX:18524914-18525034 1.0000 120 chr2R:22158080-22158200 1.0000 120 chr3R:20276158-20276278 1.0000 120 chr3R:24817256-24817376 1.0000 120 chrX:18900003-18900123 1.0000 120 chr2L:4055559-4055679 1.0000 120 chr3R:21824076-21824196 1.0000 120 chr3R:6667395-6667515 1.0000 120 chr3R:6723923-6724043 1.0000 120 chr3L:3855303-3855423 1.0000 120 chr3R:29831067-29831187 1.0000 120 chr3L:648229-648349 1.0000 120 chr2L:15432360-15432480 1.0000 120 chr3L:18274363-18274483 1.0000 120 chr3L:16744047-16744167 1.0000 120 chr3R:14875711-14875831 1.0000 120 chr3L:18243410-18243530 1.0000 120 chr2R:15155091-15155211 1.0000 120 chr2R:6603115-6603235 1.0000 120 chr2R:18528998-18529118 1.0000 120 chr3L:2468518-2468638 1.0000 120 chr3L:11336526-11336646 1.0000 120 chr3L:19636900-19637020 1.0000 120 chr3L:16060878-16060998 1.0000 120 chr2R:14305282-14305402 1.0000 120 chr2L:6700813-6700933 1.0000 120 chr2L:2494674-2494794 1.0000 120 chr3L:13403352-13403472 1.0000 120 chr2R:16096959-16097079 1.0000 120 chr2R:11809498-11809618 1.0000 120 chr2R:21018411-21018531 1.0000 120 chr2R:15835716-15835836 1.0000 120 chr3R:29581647-29581767 1.0000 120 chr2R:9388646-9388766 1.0000 120 chr2L:14562393-14562513 1.0000 120 chrX:12925907-12926027 1.0000 120 chr2L:8746366-8746486 1.0000 120 chr3L:16054247-16054367 1.0000 120 chr3L:6969219-6969339 1.0000 120 chr3R:10628425-10628545 1.0000 120 chrX:7571313-7571433 1.0000 120 chr2L:11189196-11189316 1.0000 120 chr2R:22690318-22690438 1.0000 120 chrX:10115667-10115787 1.0000 120 chr3R:24318613-24318733 1.0000 120 chr3R:9039577-9039697 1.0000 120 chr3R:9494393-9494513 1.0000 120 chr2L:7532757-7532877 1.0000 120 chr2L:6830474-6830594 1.0000 120 chr2L:17588771-17588891 1.0000 120 chr3L:6059223-6059343 1.0000 120 chrX:14743938-14744058 1.0000 120 chr3L:21047181-21047301 1.0000 120 chr3R:22878533-22878653 1.0000 120 chr2R:11892918-11893038 1.0000 120 chr2L:7635317-7635437 1.0000 120 chr3L:12616537-12616657 1.0000 120 chr2L:7632914-7633034 1.0000 120 chrX:14234225-14234345 1.0000 120 chr3L:12668132-12668252 1.0000 120 chr3L:15532839-15532959 1.0000 120 chr3R:23345304-23345424 1.0000 120 chr3L:18272372-18272492 1.0000 120 chr2R:8242599-8242719 1.0000 120 chrX:14583395-14583515 1.0000 120 chr2L:10543510-10543630 1.0000 120 chr3L:11398808-11398928 1.0000 120 chrX:10825437-10825557 1.0000 120 chrX:19225100-19225220 1.0000 120 chr2L:21619208-21619328 1.0000 120 chr3L:16710472-16710592 1.0000 120 chr3L:12803786-12803906 1.0000 120 chr3R:31706234-31706354 1.0000 120 chr3L:21007866-21007986 1.0000 120 chrX:17510329-17510449 1.0000 120 chr2L:14021222-14021342 1.0000 120 chrX:10629009-10629129 1.0000 120 chr2L:3775951-3776071 1.0000 120 chr3L:13923405-13923525 1.0000 120 chrX:18525113-18525233 1.0000 120 chr3L:16768374-16768494 1.0000 120 chr3L:10843454-10843574 1.0000 120 chr2R:15835517-15835637 1.0000 120 chr3L:7867494-7867614 1.0000 120 chr2L:15442331-15442451 1.0000 120 chr3L:6817148-6817268 1.0000 120 chr2L:3861514-3861634 1.0000 120 chr2L:18305150-18305270 1.0000 120 chr3L:12037859-12037979 1.0000 120 chr2L:14440973-14441093 1.0000 120 chr3L:19557408-19557528 1.0000 120 chr2L:10967663-10967783 1.0000 120 chr2R:11204260-11204380 1.0000 120 chr2R:22886313-22886433 1.0000 120 chr3R:6665453-6665573 1.0000 120 chr3R:25445682-25445802 1.0000 120 chr2R:23578571-23578691 1.0000 120 chrX:17713517-17713637 1.0000 120 chr3R:25174315-25174435 1.0000 120 chr3L:18771868-18771988 1.0000 120 chr3R:8180514-8180634 1.0000 120 chr3L:16061081-16061201 1.0000 120 chr2L:19377511-19377631 1.0000 120 chrX:5285975-5286095 1.0000 120 chr2R:12991292-12991412 1.0000 120 chr3R:16837938-16838058 1.0000 120 chr2R:11541193-11541313 1.0000 120 chr2L:14519361-14519481 1.0000 120 chr3L:8629089-8629209 1.0000 120 chr2R:18536637-18536757 1.0000 120 chr2R:23574903-23575023 1.0000 120 chr3L:21962009-21962129 1.0000 120 chr2R:11602013-11602133 1.0000 120 chr3R:21824277-21824397 1.0000 120 chr2L:16743102-16743222 1.0000 120 chr2L:17588971-17589091 1.0000 120 chrX:6621596-6621716 1.0000 120 chr3R:16209142-16209262 1.0000 120 chr3R:5636882-5637002 1.0000 120 chr3L:613709-613829 1.0000 120 chr2L:14367322-14367442 1.0000 120 chr3L:18997151-18997271 1.0000 120 chr3L:3875139-3875259 1.0000 120 chr3R:31064812-31064932 1.0000 120 chr2R:21364898-21365018 1.0000 120 chr3L:9028215-9028335 1.0000 120 chr3L:3437325-3437445 1.0000 120 chr3L:8692313-8692433 1.0000 120 chr3L:4379032-4379152 1.0000 120 chr3R:6791410-6791530 1.0000 120 chr3L:13189423-13189543 1.0000 120 chrX:7553528-7553648 1.0000 120 chr3R:6818727-6818847 1.0000 120 chr3R:16212971-16213091 1.0000 120 chr2R:23577479-23577599 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9727/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9727.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.345 C 0.156 G 0.153 T 0.346 Background letter frequencies (from file dataset with add-one prior applied): A 0.345 C 0.156 G 0.153 T 0.346 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGCBGGS MEME-1 width = 8 sites = 17 llr = 174 E-value = 2.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::2:::: pos.-specific C 2::82115 probability G 79a14995 matrix T 11::4::: bits 2.7 * 2.4 * ** 2.2 ** ** 1.9 ** ** Relative 1.6 *** *** Entropy 1.4 **** *** (14.8 bits) 1.1 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCGGGG consensus T C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7553528-7553648 104 3.06e-07 GTGGGCGAAG GGGCGGGG CGAAAAGGG chrX:10115667-10115787 1 3.06e-07 . GGGCGGGG ATTTTCAGTG chrX:16275901-16276021 38 1.25e-06 CCGATTACCA GGGCCGGC ATAGCGATTG chr3R:6665453-6665573 14 2.65e-06 GGGACGTTGG GGGCTGGC ACCATGGCGC chr2R:11892918-11893038 88 3.92e-06 ACTTTTCCTC CGGCCGGC AACAGCGTCA chr2R:18536637-18536757 94 5.99e-06 CAGGCGTCGC CGGCTGGG TATAAAAGGC chr3L:18771868-18771988 81 5.99e-06 CATATGCCTG CGGCTGGG GGGTTGCTTG chr3L:14447076-14447196 30 5.99e-06 AAGTGCGAGC GGGAGGGC AAAGGGCAAG chr3R:23345304-23345424 96 1.07e-05 TTTCTTACCG GTGCGGGG TAATAAAATA chr2R:8242599-8242719 95 1.14e-05 AATTGAGATC GTGCGGGC AGCGATCGAG chr2L:298374-298494 107 1.17e-05 GGGGTGCCTG GGGGCGGG AGCGAG chr3L:21047181-21047301 108 1.65e-05 TCAGGACTTT GGGATGGC AATGC chr2R:22158080-22158200 90 1.65e-05 GCAGGGATAA TGGCGGGG AATGTGCCCT chr2L:7339745-7339865 76 1.65e-05 GGGAGAGTCG GGGATGGC TGCAACCTGA chr2L:16743102-16743222 73 1.85e-05 GTAATCTTAT GGGCCGCG CTTTTTGAGG chr2R:18528998-18529118 35 1.85e-05 TGACGCCATT AGGCGGGC AAAATAAAAA chr3R:20276158-20276278 105 2.48e-05 GTTACGACTC GGGCTCGG TTTGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7553528-7553648 3.1e-07 103_[+1]_9 chrX:10115667-10115787 3.1e-07 [+1]_112 chrX:16275901-16276021 1.2e-06 37_[+1]_75 chr3R:6665453-6665573 2.6e-06 13_[+1]_99 chr2R:11892918-11893038 3.9e-06 87_[+1]_25 chr2R:18536637-18536757 6e-06 93_[+1]_19 chr3L:18771868-18771988 6e-06 80_[+1]_32 chr3L:14447076-14447196 6e-06 29_[+1]_83 chr3R:23345304-23345424 1.1e-05 95_[+1]_17 chr2R:8242599-8242719 1.1e-05 94_[+1]_18 chr2L:298374-298494 1.2e-05 106_[+1]_6 chr3L:21047181-21047301 1.6e-05 107_[+1]_5 chr2R:22158080-22158200 1.6e-05 89_[+1]_23 chr2L:7339745-7339865 1.6e-05 75_[+1]_37 chr2L:16743102-16743222 1.9e-05 72_[+1]_40 chr2R:18528998-18529118 1.9e-05 34_[+1]_78 chr3R:20276158-20276278 2.5e-05 104_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCBGGS width=8 seqs=17 chrX:7553528-7553648 ( 104) GGGCGGGG 1 chrX:10115667-10115787 ( 1) GGGCGGGG 1 chrX:16275901-16276021 ( 38) GGGCCGGC 1 chr3R:6665453-6665573 ( 14) GGGCTGGC 1 chr2R:11892918-11893038 ( 88) CGGCCGGC 1 chr2R:18536637-18536757 ( 94) CGGCTGGG 1 chr3L:18771868-18771988 ( 81) CGGCTGGG 1 chr3L:14447076-14447196 ( 30) GGGAGGGC 1 chr3R:23345304-23345424 ( 96) GTGCGGGG 1 chr2R:8242599-8242719 ( 95) GTGCGGGC 1 chr2L:298374-298494 ( 107) GGGGCGGG 1 chr3L:21047181-21047301 ( 108) GGGATGGC 1 chr2R:22158080-22158200 ( 90) TGGCGGGG 1 chr2L:7339745-7339865 ( 76) GGGATGGC 1 chr2L:16743102-16743222 ( 73) GGGCCGCG 1 chr2R:18528998-18529118 ( 35) AGGCGGGC 1 chr3R:20276158-20276278 ( 105) GGGCTCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 2.0e-002 -255 18 221 -255 -1073 -1073 253 -156 -1073 -1073 271 -1073 -97 229 -138 -1073 -1073 59 143 3 -1073 -140 262 -1073 -1073 -140 262 -1073 -1073 159 179 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.0e-002 0.058824 0.176471 0.705882 0.058824 0.000000 0.000000 0.882353 0.117647 0.000000 0.000000 1.000000 0.000000 0.176471 0.764706 0.058824 0.000000 0.000000 0.235294 0.411765 0.352941 0.000000 0.058824 0.941176 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.470588 0.529412 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCBGGS MEME-1 regular expression -------------------------------------------------------------------------------- GGGC[GTC]GG[GC] -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCACWSA MEME-2 width = 8 sites = 24 llr = 220 E-value = 2.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:4:7 pos.-specific C 2:a:a:3: probability G :a::::71 matrix T 8::::6:1 bits 2.7 ** * 2.4 ** * 2.2 ** * 1.9 ** * * Relative 1.6 **** * Entropy 1.4 **** * (13.2 bits) 1.1 **** * 0.8 ***** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCACTGA consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6621596-6621716 63 8.12e-06 ATCTACAGGA TGCACTGA GGAAAATTTA chrX:7901540-7901660 95 8.12e-06 TGGAGATAAT TGCACTGA TTCATCAAAC chr2L:7339745-7339865 43 8.12e-06 TTGATTTGTT TGCACTGA CCCGCGGGGA chr3R:10626182-10626302 87 8.12e-06 TGTTTCAAAG TGCACTGA ATCTGGTCAG chr3L:13068413-13068533 18 1.18e-05 TCTTCAATTG CGCACTGA AAATGTTGTT chr3L:13923405-13923525 48 1.99e-05 GATGATGAGT TGCACAGA GAAAAATACG chr3L:21007866-21007986 47 1.99e-05 TCAACAATGT TGCACAGA TAATTACGTA chr3R:15644898-15645018 96 1.99e-05 TTTCTCTCAG TGCACAGA TGGACAGGTG chr3R:23345102-23345222 73 2.81e-05 AGGGTTTACA TGCACTCA AAAGAAACTC chr3L:15330197-15330317 6 2.81e-05 GGGCA TGCACTCA AAGAAATTGT chrX:7166479-7166599 82 2.81e-05 TATGCAAGAA TGCACTCA AAAGTTTGTT chr3R:14589608-14589728 7 3.17e-05 TACGTT TGCACTGG GAGAAATATT chr3L:16640635-16640755 41 3.17e-05 TGTGGTGCCA TGCACTGG GTGCAATAAA chr3L:16061081-16061201 100 3.54e-05 GAATGAATAT CGCACAGA TAAGAACCCA chr2R:18202727-18202847 18 3.91e-05 TGCGCATGCG CGCACTCA TATTCCTTGT chr3R:23303392-23303512 95 4.74e-05 TTTCTCTCTG TGCACACA CCCTTatatc chr3R:8180514-8180634 45 6.44e-05 CTGTGTGCAT TGCACTCG TTGATTTCTT chr3L:18771868-18771988 107 6.44e-05 TGTATGCTCT TGCACTGT CTCTTT chr2L:10967663-10967783 112 6.81e-05 AATACTGACA CGCACACA T chr3R:6667395-6667515 8 6.81e-05 TCGTCGT CGCACACA AGACAACACT chr3R:13713604-13713724 19 7.34e-05 GGCTACGAAA TGCACTGC AAGAAAATGC chr3L:14447076-14447196 7 7.70e-05 ATCTCG GGCACTGA AAACAAAGTG chrX:10825437-10825557 8 9.41e-05 TATTTAG TGCACAGT AAATGAAAAT chr3R:8336319-8336439 36 9.41e-05 ATTATCATAT TGCACAGT CCTTTAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6621596-6621716 8.1e-06 62_[+2]_50 chrX:7901540-7901660 8.1e-06 94_[+2]_18 chr2L:7339745-7339865 8.1e-06 42_[+2]_70 chr3R:10626182-10626302 8.1e-06 86_[+2]_26 chr3L:13068413-13068533 1.2e-05 17_[+2]_95 chr3L:13923405-13923525 2e-05 47_[+2]_65 chr3L:21007866-21007986 2e-05 46_[+2]_66 chr3R:15644898-15645018 2e-05 95_[+2]_17 chr3R:23345102-23345222 2.8e-05 72_[+2]_40 chr3L:15330197-15330317 2.8e-05 5_[+2]_107 chrX:7166479-7166599 2.8e-05 81_[+2]_31 chr3R:14589608-14589728 3.2e-05 6_[+2]_106 chr3L:16640635-16640755 3.2e-05 40_[+2]_72 chr3L:16061081-16061201 3.5e-05 99_[+2]_13 chr2R:18202727-18202847 3.9e-05 17_[+2]_95 chr3R:23303392-23303512 4.7e-05 94_[+2]_18 chr3R:8180514-8180634 6.4e-05 44_[+2]_68 chr3L:18771868-18771988 6.4e-05 106_[+2]_6 chr2L:10967663-10967783 6.8e-05 111_[+2]_1 chr3R:6667395-6667515 6.8e-05 7_[+2]_105 chr3R:13713604-13713724 7.3e-05 18_[+2]_94 chr3L:14447076-14447196 7.7e-05 6_[+2]_106 chrX:10825437-10825557 9.4e-05 7_[+2]_105 chr3R:8336319-8336439 9.4e-05 35_[+2]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCACWSA width=8 seqs=24 chrX:6621596-6621716 ( 63) TGCACTGA 1 chrX:7901540-7901660 ( 95) TGCACTGA 1 chr2L:7339745-7339865 ( 43) TGCACTGA 1 chr3R:10626182-10626302 ( 87) TGCACTGA 1 chr3L:13068413-13068533 ( 18) CGCACTGA 1 chr3L:13923405-13923525 ( 48) TGCACAGA 1 chr3L:21007866-21007986 ( 47) TGCACAGA 1 chr3R:15644898-15645018 ( 96) TGCACAGA 1 chr3R:23345102-23345222 ( 73) TGCACTCA 1 chr3L:15330197-15330317 ( 6) TGCACTCA 1 chrX:7166479-7166599 ( 82) TGCACTCA 1 chr3R:14589608-14589728 ( 7) TGCACTGG 1 chr3L:16640635-16640755 ( 41) TGCACTGG 1 chr3L:16061081-16061201 ( 100) CGCACAGA 1 chr2R:18202727-18202847 ( 18) CGCACTCA 1 chr3R:23303392-23303512 ( 95) TGCACACA 1 chr3R:8180514-8180634 ( 45) TGCACTCG 1 chr3L:18771868-18771988 ( 107) TGCACTGT 1 chr2L:10967663-10967783 ( 112) CGCACACA 1 chr3R:6667395-6667515 ( 8) CGCACACA 1 chr3R:13713604-13713724 ( 19) TGCACTGC 1 chr3L:14447076-14447196 ( 7) GGCACTGA 1 chrX:10825437-10825557 ( 8) TGCACAGT 1 chr3R:8336319-8336439 ( 36) TGCACAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.85841 E= 2.5e+002 -1123 42 -187 111 -1123 -1123 271 -1123 -1123 268 -1123 -1123 153 -1123 -1123 -1123 -1123 268 -1123 -1123 12 -1123 -1123 85 -1123 110 213 -1123 104 -190 -29 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.5e+002 0.000000 0.208333 0.041667 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.625000 0.000000 0.333333 0.666667 0.000000 0.708333 0.041667 0.125000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACWSA MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GCAC[TA][GC]A -------------------------------------------------------------------------------- Time 13.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGGGAG MEME-3 width = 8 sites = 7 llr = 81 E-value = 3.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::16: pos.-specific C 9:3:1:3: probability G 1a7a99:a matrix T ::::::1: bits 2.7 * * * 2.4 * * * 2.2 ** ** * 1.9 ****** * Relative 1.6 ****** * Entropy 1.4 ****** * (16.6 bits) 1.1 ****** * 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGGGGAG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:298374-298494 46 3.12e-07 ATTTGCGTTT CGGGGGCG CTTGGCAACA chrX:3378611-3378731 94 1.00e-06 ATAAGGTTCA CGGGGGAG TGAGCGAGAG chr3R:16771735-16771855 37 2.02e-06 AGTGGTGAAG CGCGGGAG AACTTTCAAA chr3L:3449769-3449889 5 4.72e-06 GACA CGGGCGAG AAGCCAAGGC chr2L:7339745-7339865 63 4.72e-06 CGCGGGGAAA GGGGGGAG AGTCGGGGAT chr2L:3775951-3776071 54 5.43e-06 ACTGATAGAC CGCGGGTG TACCTCGGCC chr2L:11326451-11326571 5 6.13e-06 ATTC CGGGGACG ACAGTCACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:298374-298494 3.1e-07 45_[+3]_67 chrX:3378611-3378731 1e-06 93_[+3]_19 chr3R:16771735-16771855 2e-06 36_[+3]_76 chr3L:3449769-3449889 4.7e-06 4_[+3]_108 chr2L:7339745-7339865 4.7e-06 62_[+3]_50 chr2L:3775951-3776071 5.4e-06 53_[+3]_59 chr2L:11326451-11326571 6.1e-06 4_[+3]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGGGAG width=8 seqs=7 chr2L:298374-298494 ( 46) CGGGGGCG 1 chrX:3378611-3378731 ( 94) CGGGGGAG 1 chr3R:16771735-16771855 ( 37) CGCGGGAG 1 chr3L:3449769-3449889 ( 5) CGGGCGAG 1 chr2L:7339745-7339865 ( 63) GGGGGGAG 1 chr2L:3775951-3776071 ( 54) CGCGGGTG 1 chr2L:11326451-11326571 ( 5) CGGGGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.2e+002 -945 246 -10 -945 -945 -945 271 -945 -945 87 222 -945 -945 -945 271 -945 -945 -13 249 -945 -127 -945 249 -945 73 87 -945 -127 -945 -945 271 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.2e+002 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.142857 0.000000 0.857143 0.000000 0.571429 0.285714 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGGGAG MEME-3 regular expression -------------------------------------------------------------------------------- CG[GC]GGG[AC]G -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CCHCKSCC MEME-4 width = 8 sites = 16 llr = 156 E-value = 8.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::4:1::: pos.-specific C a84a267a probability G :2::443: matrix T ::3:4:1: bits 2.7 * * * 2.4 * * * 2.2 * * * 1.9 ** * * Relative 1.6 ** * *** Entropy 1.4 ** * *** (14.1 bits) 1.1 ** * *** 0.8 ** * *** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel CCACGCCC consensus C TGG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20091308-20091428 69 3.44e-07 ATAAGTTAAT CCCCGCCC TTAGCGCGTC chr2L:21619208-21619328 68 1.79e-06 actcatgttg ccacgccc actctaacgt chr2R:18536433-18536553 106 1.79e-06 TCCGTAGACC CCCCCCCC CCACCCA chr3L:18771868-18771988 20 2.57e-06 CACCACTACT CCCCTCCC AACCAGCTCC chr2R:9711447-9711567 72 5.52e-06 CCCCAAATGC CCCCTGCC ACTTCCCTCC chrX:10115667-10115787 21 6.97e-06 TTTCAGTGCC CCACCCCC CTTTTTACCC chr2L:3775951-3776071 64 9.44e-06 CGCGGGTGTA CCTCGGCC TTAAAATTGT chrX:9689281-9689401 82 1.05e-05 TAATTATTTT CCACGCGC ATTTCTCGAC chr2L:7339745-7339865 2 2.62e-05 G CCACTCGC ATGTTGACAA chrX:17510329-17510449 92 2.96e-05 GGTACAAAAA CGACGGCC GACTGAGAGA chr2L:6700813-6700933 67 3.03e-05 TCGGTTATTT CGCCTGCC ACAGATTACA chrX:5086028-5086148 26 3.29e-05 TTCGTTATTG CCTCCCGC CGCGTCTTAT chr3L:18997151-18997271 96 3.79e-05 CCGAATCGCC CCACTGGC TCCAAAGTCC chrX:7553528-7553648 68 3.94e-05 AGAGTCGAAC CGTCGGCC GGATCGTTTG chr3L:19899045-19899165 108 5.92e-05 CATTAGTATA CCTCACCC TAATT chr3L:22130324-22130444 10 6.74e-05 TGTGGCACT CCCCTCTC GAAATCCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20091308-20091428 3.4e-07 68_[+4]_44 chr2L:21619208-21619328 1.8e-06 67_[+4]_45 chr2R:18536433-18536553 1.8e-06 105_[+4]_7 chr3L:18771868-18771988 2.6e-06 19_[+4]_93 chr2R:9711447-9711567 5.5e-06 71_[+4]_41 chrX:10115667-10115787 7e-06 20_[+4]_92 chr2L:3775951-3776071 9.4e-06 63_[+4]_49 chrX:9689281-9689401 1.1e-05 81_[+4]_31 chr2L:7339745-7339865 2.6e-05 1_[+4]_111 chrX:17510329-17510449 3e-05 91_[+4]_21 chr2L:6700813-6700933 3e-05 66_[+4]_46 chrX:5086028-5086148 3.3e-05 25_[+4]_87 chr3L:18997151-18997271 3.8e-05 95_[+4]_17 chrX:7553528-7553648 3.9e-05 67_[+4]_45 chr3L:19899045-19899165 5.9e-05 107_[+4]_5 chr3L:22130324-22130444 6.7e-05 9_[+4]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCHCKSCC width=8 seqs=16 chr2R:20091308-20091428 ( 69) CCCCGCCC 1 chr2L:21619208-21619328 ( 68) CCACGCCC 1 chr2R:18536433-18536553 ( 106) CCCCCCCC 1 chr3L:18771868-18771988 ( 20) CCCCTCCC 1 chr2R:9711447-9711567 ( 72) CCCCTGCC 1 chrX:10115667-10115787 ( 21) CCACCCCC 1 chr2L:3775951-3776071 ( 64) CCTCGGCC 1 chrX:9689281-9689401 ( 82) CCACGCGC 1 chr2L:7339745-7339865 ( 2) CCACTCGC 1 chrX:17510329-17510449 ( 92) CGACGGCC 1 chr2L:6700813-6700933 ( 67) CGCCTGCC 1 chrX:5086028-5086148 ( 26) CCTCCCGC 1 chr3L:18997151-18997271 ( 96) CCACTGGC 1 chrX:7553528-7553648 ( 68) CGTCGGCC 1 chr3L:19899045-19899165 ( 108) CCTCACCC 1 chr3L:22130324-22130444 ( 10) CCCCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 8.0e+003 -1064 268 -1064 -1064 -1064 238 30 -1064 12 127 -1064 -47 -1064 268 -1064 -1064 -246 27 130 11 -1064 200 130 -1064 -1064 214 71 -247 -1064 268 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 8.0e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.812500 0.187500 0.000000 0.375000 0.375000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.062500 0.187500 0.375000 0.375000 0.000000 0.625000 0.375000 0.000000 0.000000 0.687500 0.250000 0.062500 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCKSCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[ACT]C[GT][CG][CG]C -------------------------------------------------------------------------------- Time 26.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGTCTY MEME-5 width = 8 sites = 8 llr = 94 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C a:a::a:6 probability G :a:a:::: matrix T ::::a:84 bits 2.7 **** * 2.4 **** * 2.2 **** * 1.9 **** * Relative 1.6 ****** Entropy 1.4 ****** * (17.0 bits) 1.1 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGTCTC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:648229-648349 102 1.66e-06 CACCCCTATT CGCGTCTC CAGAATGTTT chr3R:29831067-29831187 34 1.66e-06 GTTTGCCATC CGCGTCTC TGTAATGTTT chrX:18947002-18947122 34 1.66e-06 AAGATGAATT CGCGTCTC AAACCCTATA chr2R:20091308-20091428 81 3.31e-06 CCGCCCTTAG CGCGTCAC ATTTAATTCT chrX:3378611-3378731 26 3.31e-06 CGAGACGGGG CGCGTCAC GTGCGAGCGA chrX:7553528-7553648 4 7.00e-06 GCT CGCGTCTT GTTTAGACAA chrX:5086028-5086148 34 7.00e-06 TGCCTCCCGC CGCGTCTT ATTTTACTCA chr3R:6949465-6949585 9 7.00e-06 TCTTTACA CGCGTCTT TAGGAGTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:648229-648349 1.7e-06 101_[+5]_11 chr3R:29831067-29831187 1.7e-06 33_[+5]_79 chrX:18947002-18947122 1.7e-06 33_[+5]_79 chr2R:20091308-20091428 3.3e-06 80_[+5]_32 chrX:3378611-3378731 3.3e-06 25_[+5]_87 chrX:7553528-7553648 7e-06 3_[+5]_109 chrX:5086028-5086148 7e-06 33_[+5]_79 chr3R:6949465-6949585 7e-06 8_[+5]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGTCTY width=8 seqs=8 chr3L:648229-648349 ( 102) CGCGTCTC 1 chr3R:29831067-29831187 ( 34) CGCGTCTC 1 chrX:18947002-18947122 ( 34) CGCGTCTC 1 chr2R:20091308-20091428 ( 81) CGCGTCAC 1 chrX:3378611-3378731 ( 26) CGCGTCAC 1 chrX:7553528-7553648 ( 4) CGCGTCTT 1 chrX:5086028-5086148 ( 34) CGCGTCTT 1 chr3R:6949465-6949585 ( 9) CGCGTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.1e+002 -965 268 -965 -965 -965 -965 271 -965 -965 268 -965 -965 -965 -965 271 -965 -965 -965 -965 153 -965 268 -965 -965 -46 -965 -965 111 -965 200 -965 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.625000 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCTY MEME-5 regular expression -------------------------------------------------------------------------------- CGCGTC[TA][CT] -------------------------------------------------------------------------------- Time 32.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3378611-3378731 5.49e-07 25_[+5(3.31e-06)]_60_[+3(1.00e-06)]_\ 19 chr2L:298374-298494 4.33e-06 45_[+3(3.12e-07)]_55_[+3(9.73e-06)]_\ 4 chr2R:18536433-18536553 2.69e-04 103_[+4(1.79e-06)]_[+4(2.96e-05)]_1 chr3R:31610455-31610575 2.44e-02 120 chr3L:14961205-14961325 9.99e-01 120 chr3L:18225170-18225290 7.78e-01 120 chr3R:10626182-10626302 6.31e-02 86_[+2(8.12e-06)]_26 chr3R:31704673-31704793 6.49e-01 120 chrX:457899-458019 9.99e-01 120 chr3L:15670593-15670713 9.91e-01 120 chrX:18947002-18947122 7.77e-03 33_[+5(1.66e-06)]_79 chr3R:31610667-31610787 4.54e-02 120 chr2L:9990248-9990368 3.25e-01 120 chrX:9689281-9689401 1.06e-02 81_[+4(1.05e-05)]_31 chr2R:20091308-20091428 1.81e-05 68_[+4(3.44e-07)]_4_[+5(3.31e-06)]_\ 32 chr3R:24580521-24580641 4.27e-01 120 chr3L:15321109-15321229 7.52e-01 120 chr3R:13799722-13799842 1.00e+00 120 chr3L:15794441-15794561 8.70e-01 120 chr3R:19339335-19339455 9.89e-01 120 chr3R:19935244-19935364 9.96e-01 120 chr2L:19219539-19219659 6.45e-01 120 chr3L:3978116-3978236 8.74e-01 120 chr2R:10196352-10196472 9.78e-01 120 chr2R:9660235-9660355 9.96e-01 120 chr2L:7292148-7292268 5.53e-01 120 chr3L:745671-745791 9.93e-01 120 chr3L:5630213-5630333 7.07e-01 120 chr3L:2884593-2884713 7.78e-02 120 chr2L:14690950-14691070 9.99e-01 120 chr3L:10847878-10847998 7.02e-01 120 chr2R:18202727-18202847 6.36e-03 17_[+2(3.91e-05)]_95 chr2R:18677915-18678035 9.97e-01 120 chr3R:25184170-25184290 9.70e-01 120 chr2L:3819068-3819188 9.97e-01 120 chr3R:13972267-13972387 1.50e-01 120 chrX:7166479-7166599 1.50e-02 81_[+2(2.81e-05)]_31 chr3L:21462958-21463078 9.76e-01 120 chr3R:16718077-16718197 9.62e-01 120 chr3R:6949465-6949585 6.46e-02 8_[+5(7.00e-06)]_104 chr2R:9711447-9711567 2.45e-03 71_[+4(5.52e-06)]_41 chr3R:11368852-11368972 6.84e-01 120 chr3L:13068413-13068533 6.17e-02 17_[+2(1.18e-05)]_95 chr2L:7624302-7624422 9.92e-01 120 chr3L:14978268-14978388 9.18e-01 120 chr3L:20919003-20919123 9.58e-01 120 chr3R:29541464-29541584 6.92e-01 120 chr3L:19179543-19179663 9.80e-01 120 chr3R:13404961-13405081 6.80e-01 120 chr3L:15847747-15847867 3.38e-01 120 chr3L:6981974-6982094 1.00e+00 120 chr3L:14447076-14447196 3.52e-05 6_[+2(7.70e-05)]_15_[+1(5.99e-06)]_\ 83 chr3L:15330197-15330317 8.51e-02 5_[+2(2.81e-05)]_107 chrX:17582045-17582165 7.66e-01 120 chr3L:13049794-13049914 5.95e-01 120 chrX:10784788-10784908 9.38e-02 120 chrX:7552260-7552380 3.31e-01 120 chr3L:18349466-18349586 7.74e-01 120 chr3L:11439720-11439840 1.99e-01 120 chr2L:18871848-18871968 9.85e-01 120 chr2L:3601004-3601124 5.62e-01 120 chr2R:14312315-14312435 6.60e-01 120 chrX:8830211-8830331 9.53e-01 120 chrX:5086028-5086148 3.26e-04 25_[+4(3.29e-05)]_[+5(7.00e-06)]_79 chr2R:11970355-11970475 3.83e-01 120 chr3L:11306280-11306400 1.81e-01 120 chr3L:22130324-22130444 6.91e-03 9_[+4(6.74e-05)]_103 chr3L:20623684-20623804 1.00e+00 120 chr3L:19899045-19899165 2.82e-01 107_[+4(5.92e-05)]_5 chr3L:18297487-18297607 9.61e-01 120 chr2L:7293596-7293716 3.40e-01 120 chrX:17510611-17510731 8.39e-01 120 chr3R:10641369-10641489 4.22e-01 120 chr3R:15652740-15652860 7.57e-01 120 chrX:8445078-8445198 8.33e-01 120 chr2L:19285619-19285739 9.45e-01 120 chr2L:7339745-7339865 2.39e-08 1_[+4(2.62e-05)]_33_[+2(8.12e-06)]_\ 12_[+3(4.72e-06)]_3_[+3(1.60e-05)]_39 chr3R:5413125-5413245 9.47e-01 120 chr3R:22526483-22526603 9.07e-02 120 chr2R:18963341-18963461 2.99e-01 120 chr3L:16640635-16640755 3.03e-02 40_[+2(3.17e-05)]_72 chrX:16275901-16276021 7.11e-04 37_[+1(1.25e-06)]_75 chr3R:23133679-23133799 4.44e-01 120 chr3L:3449769-3449889 1.04e-03 4_[+3(4.72e-06)]_108 chr3R:16801113-16801233 9.64e-01 120 chr2L:9595060-9595180 1.87e-01 120 chr3R:14589608-14589728 1.92e-01 6_[+2(3.17e-05)]_106 chr2R:9703357-9703477 4.60e-01 120 chr2R:18209842-18209962 5.97e-02 99_[+2(2.81e-05)]_13 chrX:17830433-17830553 8.86e-01 120 chr3L:13403152-13403272 4.38e-01 120 chr2L:11326451-11326571 3.43e-04 4_[+3(6.13e-06)]_108 chr3L:1431736-1431856 2.11e-02 64_[+5(7.93e-05)]_48 chr2R:15100636-15100756 9.95e-01 120 chr3R:23345102-23345222 1.87e-01 72_[+2(2.81e-05)]_40 chr3L:14956429-14956549 6.13e-02 120 chr2L:3805386-3805506 1.00e+00 120 chr3R:23303392-23303512 1.09e-01 94_[+2(4.74e-05)]_18 chr3L:5857022-5857142 8.65e-01 120 chr3R:8336319-8336439 9.42e-02 35_[+2(9.41e-05)]_77 chrX:7901540-7901660 5.27e-02 94_[+2(8.12e-06)]_18 chrX:18208509-18208629 6.90e-01 120 chr3L:10849609-10849729 1.00e+00 120 chr3R:21420079-21420199 9.20e-01 120 chr3R:20829518-20829638 5.83e-01 120 chr3L:15693188-15693308 5.62e-01 120 chr3L:7862868-7862988 3.02e-01 120 chr3L:11253378-11253498 3.78e-03 120 chr3L:3983513-3983633 3.74e-01 120 chr3R:16771735-16771855 2.41e-02 36_[+3(2.02e-06)]_76 chr3L:7953074-7953194 7.18e-01 120 chr3R:19627926-19628046 4.35e-01 120 chrX:3367418-3367538 8.05e-01 120 chr3R:15644898-15645018 3.98e-02 95_[+2(1.99e-05)]_17 chr3R:13713604-13713724 1.39e-01 18_[+2(7.34e-05)]_94 chrX:18524914-18525034 3.12e-01 120 chr2R:22158080-22158200 1.73e-03 89_[+1(1.65e-05)]_23 chr3R:20276158-20276278 1.18e-03 104_[+1(2.48e-05)]_8 chr3R:24817256-24817376 9.99e-01 120 chrX:18900003-18900123 7.01e-01 120 chr2L:4055559-4055679 8.99e-01 120 chr3R:21824076-21824196 6.63e-01 120 chr3R:6667395-6667515 5.34e-02 7_[+2(6.81e-05)]_105 chr3R:6723923-6724043 4.68e-01 120 chr3L:3855303-3855423 9.92e-01 120 chr3R:29831067-29831187 5.35e-03 33_[+5(1.66e-06)]_79 chr3L:648229-648349 9.19e-03 101_[+5(1.66e-06)]_11 chr2L:15432360-15432480 2.53e-01 120 chr3L:18274363-18274483 8.70e-03 120 chr3L:16744047-16744167 6.09e-02 120 chr3R:14875711-14875831 7.21e-01 120 chr3L:18243410-18243530 2.63e-02 120 chr2R:15155091-15155211 1.00e+00 120 chr2R:6603115-6603235 4.04e-01 120 chr2R:18528998-18529118 7.39e-04 34_[+1(1.85e-05)]_78 chr3L:2468518-2468638 8.99e-01 120 chr3L:11336526-11336646 1.99e-01 120 chr3L:19636900-19637020 9.99e-01 120 chr3L:16060878-16060998 9.90e-01 120 chr2R:14305282-14305402 9.30e-01 120 chr2L:6700813-6700933 2.44e-03 66_[+4(3.03e-05)]_46 chr2L:2494674-2494794 8.73e-02 120 chr3L:13403352-13403472 9.98e-01 120 chr2R:16096959-16097079 4.21e-01 120 chr2R:11809498-11809618 3.67e-01 120 chr2R:21018411-21018531 9.99e-01 120 chr2R:15835716-15835836 4.84e-01 120 chr3R:29581647-29581767 2.08e-01 120 chr2R:9388646-9388766 8.92e-01 120 chr2L:14562393-14562513 9.54e-01 120 chrX:12925907-12926027 1.00e+00 120 chr2L:8746366-8746486 6.70e-01 120 chr3L:16054247-16054367 1.00e+00 120 chr3L:6969219-6969339 9.99e-01 120 chr3R:10628425-10628545 9.89e-01 120 chrX:7571313-7571433 9.86e-01 120 chr2L:11189196-11189316 9.67e-01 120 chr2R:22690318-22690438 9.98e-01 120 chrX:10115667-10115787 6.31e-06 [+1(3.06e-07)]_12_[+4(6.97e-06)]_92 chr3R:24318613-24318733 9.96e-01 120 chr3R:9039577-9039697 4.05e-01 120 chr3R:9494393-9494513 9.74e-01 120 chr2L:7532757-7532877 3.80e-01 120 chr2L:6830474-6830594 9.99e-01 120 chr2L:17588771-17588891 9.84e-01 120 chr3L:6059223-6059343 2.75e-01 120 chrX:14743938-14744058 8.00e-01 120 chr3L:21047181-21047301 3.21e-02 107_[+1(1.65e-05)]_5 chr3R:22878533-22878653 5.41e-01 120 chr2R:11892918-11893038 2.79e-06 87_[+1(3.92e-06)]_25 chr2L:7635317-7635437 7.89e-01 120 chr3L:12616537-12616657 8.89e-01 120 chr2L:7632914-7633034 2.91e-02 120 chrX:14234225-14234345 6.36e-01 120 chr3L:12668132-12668252 3.50e-01 120 chr3L:15532839-15532959 2.91e-01 120 chr3R:23345304-23345424 1.48e-02 95_[+1(1.07e-05)]_17 chr3L:18272372-18272492 6.56e-01 120 chr2R:8242599-8242719 1.43e-03 94_[+1(1.14e-05)]_18 chrX:14583395-14583515 3.91e-02 120 chr2L:10543510-10543630 1.00e+00 120 chr3L:11398808-11398928 1.00e+00 120 chrX:10825437-10825557 6.56e-03 7_[+2(9.41e-05)]_105 chrX:19225100-19225220 9.50e-01 120 chr2L:21619208-21619328 1.13e-03 67_[+4(1.79e-06)]_45 chr3L:16710472-16710592 8.64e-01 120 chr3L:12803786-12803906 5.68e-01 120 chr3R:31706234-31706354 1.69e-01 120 chr3L:21007866-21007986 1.80e-02 46_[+2(1.99e-05)]_66 chrX:17510329-17510449 1.41e-02 91_[+4(2.96e-05)]_21 chr2L:14021222-14021342 9.92e-01 120 chrX:10629009-10629129 6.95e-01 120 chr2L:3775951-3776071 3.24e-05 53_[+3(5.43e-06)]_2_[+4(9.44e-06)]_\ 49 chr3L:13923405-13923525 9.44e-02 47_[+2(1.99e-05)]_65 chrX:18525113-18525233 1.62e-02 120 chr3L:16768374-16768494 3.57e-01 120 chr3L:10843454-10843574 9.64e-01 120 chr2R:15835517-15835637 1.00e+00 120 chr3L:7867494-7867614 5.49e-03 67_[+1(5.70e-05)]_45 chr2L:15442331-15442451 9.18e-01 120 chr3L:6817148-6817268 5.36e-01 120 chr2L:3861514-3861634 3.15e-01 120 chr2L:18305150-18305270 1.00e+00 120 chr3L:12037859-12037979 1.04e-01 120 chr2L:14440973-14441093 6.70e-01 120 chr3L:19557408-19557528 9.63e-01 120 chr2L:10967663-10967783 1.08e-02 111_[+2(6.81e-05)]_1 chr2R:11204260-11204380 9.78e-03 54_[+3(3.30e-05)]_58 chr2R:22886313-22886433 1.00e+00 120 chr3R:6665453-6665573 3.70e-05 13_[+1(2.65e-06)]_72_[+3(3.91e-05)]_\ 3_[+1(4.98e-05)]_8 chr3R:25445682-25445802 9.78e-01 120 chr2R:23578571-23578691 7.70e-01 120 chrX:17713517-17713637 7.47e-01 120 chr3R:25174315-25174435 8.42e-01 120 chr3L:18771868-18771988 4.22e-07 19_[+4(2.57e-06)]_53_[+1(5.99e-06)]_\ 18_[+2(6.44e-05)]_6 chr3R:8180514-8180634 1.31e-01 44_[+2(6.44e-05)]_68 chr3L:16061081-16061201 2.00e-01 99_[+2(3.54e-05)]_13 chr2L:19377511-19377631 2.29e-01 120 chrX:5285975-5286095 9.68e-01 120 chr2R:12991292-12991412 5.79e-01 120 chr3R:16837938-16838058 9.79e-01 120 chr2R:11541193-11541313 2.73e-02 120 chr2L:14519361-14519481 5.35e-01 120 chr3L:8629089-8629209 1.00e+00 120 chr2R:18536637-18536757 2.77e-04 93_[+1(5.99e-06)]_19 chr2R:23574903-23575023 4.01e-01 120 chr3L:21962009-21962129 3.02e-02 120 chr2R:11602013-11602133 9.57e-01 120 chr3R:21824277-21824397 2.63e-01 120 chr2L:16743102-16743222 5.89e-04 72_[+1(1.85e-05)]_40 chr2L:17588971-17589091 9.90e-01 120 chrX:6621596-6621716 5.60e-03 62_[+2(8.12e-06)]_50 chr3R:16209142-16209262 6.50e-01 120 chr3R:5636882-5637002 7.28e-01 120 chr3L:613709-613829 6.74e-01 120 chr2L:14367322-14367442 7.23e-01 120 chr3L:18997151-18997271 1.05e-03 95_[+4(3.79e-05)]_17 chr3L:3875139-3875259 7.42e-01 120 chr3R:31064812-31064932 9.66e-01 120 chr2R:21364898-21365018 4.14e-02 120 chr3L:9028215-9028335 9.59e-01 120 chr3L:3437325-3437445 7.45e-01 120 chr3L:8692313-8692433 9.80e-01 120 chr3L:4379032-4379152 5.18e-01 120 chr3R:6791410-6791530 3.41e-01 120 chr3L:13189423-13189543 4.52e-01 120 chrX:7553528-7553648 4.68e-08 3_[+5(7.00e-06)]_56_[+4(3.94e-05)]_\ 28_[+1(3.06e-07)]_9 chr3R:6818727-6818847 3.04e-01 120 chr3R:16212971-16213091 9.89e-01 120 chr2R:23577479-23577599 8.09e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************