******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9705.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:5904697-5904817 1.0000 120 chr2R:9915310-9915430 1.0000 120 chr3L:3691747-3691867 1.0000 120 chr2R:14986400-14986520 1.0000 120 chr3R:14398031-14398151 1.0000 120 chrX:2648088-2648208 1.0000 120 chr3L:8371016-8371136 1.0000 120 chr3L:13923925-13924045 1.0000 120 chrX:6030107-6030227 1.0000 120 chr3L:18790652-18790772 1.0000 120 chr2L:18003674-18003794 1.0000 120 chr3L:9380691-9380811 1.0000 120 chr3L:2549063-2549183 1.0000 120 chr3R:30689751-30689871 1.0000 120 chrX:14750555-14750675 1.0000 120 chrX:2452930-2453050 1.0000 120 chr3R:14901556-14901676 1.0000 120 chr3R:4243337-4243457 1.0000 120 chr3R:14730348-14730468 1.0000 120 chr3L:7792328-7792448 1.0000 120 chr2L:7909361-7909481 1.0000 120 chr2L:15463668-15463788 1.0000 120 chr2L:5429256-5429376 1.0000 120 chr2L:12013376-12013496 1.0000 120 chr3L:16177364-16177484 1.0000 120 chr2L:5393441-5393561 1.0000 120 chr3L:19035619-19035739 1.0000 120 chr2L:526308-526428 1.0000 120 chrX:19697682-19697802 1.0000 120 chr2R:19187289-19187409 1.0000 120 chrX:3389984-3390104 1.0000 120 chr2L:5024904-5025024 1.0000 120 chr3L:2490850-2490970 1.0000 120 chr3L:5633728-5633848 1.0000 120 chr3R:14918240-14918360 1.0000 120 chr2L:18678361-18678481 1.0000 120 chr3L:12420557-12420677 1.0000 120 chrX:1574367-1574487 1.0000 120 chr2L:7419514-7419634 1.0000 120 chr3L:6359294-6359414 1.0000 120 chr3L:17590358-17590478 1.0000 120 chr3R:23148524-23148644 1.0000 120 chr3R:21823199-21823319 1.0000 120 chrX:16930472-16930592 1.0000 120 chr3R:7967471-7967591 1.0000 120 chr2L:6464884-6465004 1.0000 120 chr2L:6081150-6081270 1.0000 120 chr3R:14308845-14308965 1.0000 120 chrX:6344397-6344517 1.0000 120 chr2L:7320661-7320781 1.0000 120 chr3L:9033710-9033830 1.0000 120 chrX:8730454-8730574 1.0000 120 chr2R:15340378-15340498 1.0000 120 chr2L:5249911-5250031 1.0000 120 chrX:2604007-2604127 1.0000 120 chr2R:21659977-21660097 1.0000 120 chr2R:23894893-23895013 1.0000 120 chr2L:11046189-11046309 1.0000 120 chr2R:6556906-6557026 1.0000 120 chrX:18273389-18273509 1.0000 120 chr2R:14109790-14109910 1.0000 120 chr3L:6285555-6285675 1.0000 120 chrX:9082672-9082792 1.0000 120 chr2L:20463495-20463615 1.0000 120 chrX:13541051-13541171 1.0000 120 chr2L:18559234-18559354 1.0000 120 chr2L:11326554-11326674 1.0000 120 chr2L:4965554-4965674 1.0000 120 chr3L:18109567-18109687 1.0000 120 chrX:1320498-1320618 1.0000 120 chr3R:8029717-8029837 1.0000 120 chr2R:9065330-9065450 1.0000 120 chr3L:17962397-17962517 1.0000 120 chr3R:17595203-17595323 1.0000 120 chr2R:22529882-22530002 1.0000 120 chrX:15530566-15530686 1.0000 120 chr2L:2361750-2361870 1.0000 120 chr3R:31308974-31309094 1.0000 120 chr3L:5637691-5637811 1.0000 120 chr2L:6022986-6023106 1.0000 120 chr3R:11565175-11565295 1.0000 120 chr3R:11614575-11614695 1.0000 120 chr2L:18864244-18864364 1.0000 120 chr3L:14564547-14564667 1.0000 120 chrX:8895630-8895750 1.0000 120 chr3L:7960965-7961085 1.0000 120 chrX:2140637-2140757 1.0000 120 chr3R:27593300-27593420 1.0000 120 chr3R:8304008-8304128 1.0000 120 chr2R:22666747-22666867 1.0000 120 chrX:17879343-17879463 1.0000 120 chr2R:6143627-6143747 1.0000 120 chr3R:27171341-27171461 1.0000 120 chr3L:3395482-3395602 1.0000 120 chr3R:6950275-6950395 1.0000 120 chr3L:16183277-16183397 1.0000 120 chrX:17551091-17551211 1.0000 120 chr3L:664003-664123 1.0000 120 chrX:18256661-18256781 1.0000 120 chr2R:13935302-13935422 1.0000 120 chrX:20170018-20170138 1.0000 120 chr3R:31702035-31702155 1.0000 120 chr3L:14031255-14031375 1.0000 120 chrX:18272489-18272609 1.0000 120 chr2L:16727869-16727989 1.0000 120 chr2L:10615952-10616072 1.0000 120 chr2R:22525219-22525339 1.0000 120 chr3R:15588792-15588912 1.0000 120 chr3R:25633989-25634109 1.0000 120 chr3L:9675561-9675681 1.0000 120 chrX:5025365-5025485 1.0000 120 chrX:10324769-10324889 1.0000 120 chrX:768013-768133 1.0000 120 chr3L:5863089-5863209 1.0000 120 chr2L:3554077-3554197 1.0000 120 chr3L:16024727-16024847 1.0000 120 chr2L:11306227-11306347 1.0000 120 chr2L:8233760-8233880 1.0000 120 chr3R:5223349-5223469 1.0000 120 chr2L:10791440-10791560 1.0000 120 chrX:17490001-17490121 1.0000 120 chr3R:23496485-23496605 1.0000 120 chr3L:21594531-21594651 1.0000 120 chrX:10728184-10728304 1.0000 120 chr2L:18466283-18466403 1.0000 120 chr3R:17059206-17059326 1.0000 120 chr2R:24779769-24779889 1.0000 120 chr3L:728023-728143 1.0000 120 chr2R:22886141-22886261 1.0000 120 chr2R:10122631-10122751 1.0000 120 chr3L:12616542-12616662 1.0000 120 chr3R:29131005-29131125 1.0000 120 chr2L:2357424-2357544 1.0000 120 chr3L:12079351-12079471 1.0000 120 chr3L:1683194-1683314 1.0000 120 chr3L:20403541-20403661 1.0000 120 chr3L:16974915-16975035 1.0000 120 chr2R:11637436-11637556 1.0000 120 chr3R:24938255-24938375 1.0000 120 chr3R:5660157-5660277 1.0000 120 chr2R:18209805-18209925 1.0000 120 chrX:9251425-9251545 1.0000 120 chr3R:12369864-12369984 1.0000 120 chr3R:11974857-11974977 1.0000 120 chr2L:13811490-13811610 1.0000 120 chr2L:5493040-5493160 1.0000 120 chr3R:23201151-23201271 1.0000 120 chr3L:7641627-7641747 1.0000 120 chr3R:14918451-14918571 1.0000 120 chr3R:15351043-15351163 1.0000 120 chr3L:15762934-15763054 1.0000 120 chr3R:8341043-8341163 1.0000 120 chr3L:10928890-10929010 1.0000 120 chr3R:15213732-15213852 1.0000 120 chr3R:15347889-15348009 1.0000 120 chr3L:19630813-19630933 1.0000 120 chr2R:23385664-23385784 1.0000 120 chr3R:18914055-18914175 1.0000 120 chrX:11806389-11806509 1.0000 120 chr2R:13476896-13477016 1.0000 120 chr2L:8006203-8006323 1.0000 120 chr3R:20634694-20634814 1.0000 120 chr3R:31945673-31945793 1.0000 120 chr3L:10940448-10940568 1.0000 120 chr3L:9742413-9742533 1.0000 120 chr2R:17592481-17592601 1.0000 120 chrX:19522017-19522137 1.0000 120 chr2L:17749200-17749320 1.0000 120 chr3R:23888790-23888910 1.0000 120 chr3R:13941558-13941678 1.0000 120 chr3L:3343428-3343548 1.0000 120 chr3L:17608702-17608822 1.0000 120 chr2L:2214142-2214262 1.0000 120 chr3L:818522-818642 1.0000 120 chr2L:5977409-5977529 1.0000 120 chr3L:16602850-16602970 1.0000 120 chr3R:16441757-16441877 1.0000 120 chr2L:1668790-1668910 1.0000 120 chrX:9135202-9135322 1.0000 120 chr3L:6495292-6495412 1.0000 120 chr2R:10237664-10237784 1.0000 120 chr2L:3781678-3781798 1.0000 120 chr3L:17045017-17045137 1.0000 120 chr3L:18672354-18672474 1.0000 120 chr3L:761921-762041 1.0000 120 chr3R:21824071-21824191 1.0000 120 chr3L:3246989-3247109 1.0000 120 chr2L:21314026-21314146 1.0000 120 chr2R:6653020-6653140 1.0000 120 chr2L:5252823-5252943 1.0000 120 chrX:15081186-15081306 1.0000 120 chrX:17830483-17830603 1.0000 120 chr2L:5278536-5278656 1.0000 120 chrX:6624469-6624589 1.0000 120 chr3L:21099175-21099295 1.0000 120 chr3R:13841030-13841150 1.0000 120 chr3L:1388222-1388342 1.0000 120 chr2R:17836203-17836323 1.0000 120 chr3R:12443316-12443436 1.0000 120 chrX:5336838-5336958 1.0000 120 chr2R:11397612-11397732 1.0000 120 chr2L:19817299-19817419 1.0000 120 chr2L:15389099-15389219 1.0000 120 chrX:2012963-2013083 1.0000 120 chr2L:7992037-7992157 1.0000 120 chrX:8141763-8141883 1.0000 120 chr3R:13849464-13849584 1.0000 120 chr2R:17274138-17274258 1.0000 120 chrX:17856887-17857007 1.0000 120 chr3L:11298456-11298576 1.0000 120 chr2L:7376269-7376389 1.0000 120 chrX:12611735-12611855 1.0000 120 chr2L:7320053-7320173 1.0000 120 chr3R:29519446-29519566 1.0000 120 chr3R:6397897-6398017 1.0000 120 chr2L:9493412-9493532 1.0000 120 chr2R:12870176-12870296 1.0000 120 chr3L:19992062-19992182 1.0000 120 chrX:18538377-18538497 1.0000 120 chr3R:8927291-8927411 1.0000 120 chr3R:10634024-10634144 1.0000 120 chr2R:10806547-10806667 1.0000 120 chr3L:4254656-4254776 1.0000 120 chr2L:423264-423384 1.0000 120 chr3R:20765847-20765967 1.0000 120 chr2L:5501479-5501599 1.0000 120 chr2L:9494865-9494985 1.0000 120 chrX:15739021-15739141 1.0000 120 chr3L:6752905-6753025 1.0000 120 chrX:17627791-17627911 1.0000 120 chr2L:404025-404145 1.0000 120 chr2L:4403152-4403272 1.0000 120 chr2L:8859960-8860080 1.0000 120 chr3R:4873870-4873990 1.0000 120 chrX:4391545-4391665 1.0000 120 chr3L:13500044-13500164 1.0000 120 chr2R:10237877-10237997 1.0000 120 chr2L:11809401-11809521 1.0000 120 chr3R:18742460-18742580 1.0000 120 chrX:18928792-18928912 1.0000 120 chrX:8755467-8755587 1.0000 120 chrX:15043885-15044005 1.0000 120 chrX:14234166-14234286 1.0000 120 chr3R:10661214-10661334 1.0000 120 chr2R:18850725-18850845 1.0000 120 chrX:4610570-4610690 1.0000 120 chrX:3381059-3381179 1.0000 120 chr2L:7104712-7104832 1.0000 120 chr2R:17536276-17536396 1.0000 120 chrX:18783508-18783628 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9705/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9705.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.331 C 0.175 G 0.178 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.331 C 0.175 G 0.178 T 0.315 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SBGGSMGC MEME-1 width = 8 sites = 32 llr = 278 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C 432:54:a probability G 636a5:a: matrix T :32::2:: bits 2.5 * ** 2.3 * ** 2.0 * ** 1.8 * ** Relative 1.5 * ** ** Entropy 1.3 * ** ** (12.5 bits) 1.0 * *** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GCGGCCGC consensus CGC GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9915310-9915430 2 3.83e-06 G GCGGGCGC GTTTACCCCT chr3L:18672354-18672474 67 5.70e-06 AATTGACATG CCGGCCGC TCCGTGCGAT chrX:8141763-8141883 23 9.29e-06 GGCACCGGAA CCGGGCGC ACACATCCAG chrX:3381059-3381179 32 1.46e-05 TTTACGACTT GCGGCAGC ACAGTGGTTG chrX:1320498-1320618 9 1.46e-05 GCCAGCTG GCGGCAGC ATCTCTTATT chr3L:17962397-17962517 6 2.01e-05 ACCAC GGGGGAGC ATATGCAAGC chr2R:15340378-15340498 86 2.01e-05 GGAGTAATCT GCGGGAGC ACAGGCTCCA chrX:6030107-6030227 75 2.37e-05 AATCGAATAA GGCGGCGC GTCAATGATG chr3L:13500044-13500164 51 2.89e-05 GCTTCCCACG CCGGCAGC TCGGTCAATC chr2R:12870176-12870296 101 2.89e-05 TTGACTACGA CTGGGCGC ACGTGTTTTC chr2R:17536276-17536396 34 3.42e-05 taaaaGTTAC CCCGCCGC GTTATCAACG chr2R:21659977-21660097 97 3.42e-05 TTGTATCGGT CGCGCCGC TAATCGGCGG chr3R:14901556-14901676 63 3.42e-05 ACTGCGCCGA GGGGCTGC CAACTTTGGG chr3R:31945673-31945793 92 4.10e-05 GCATAACCAA GTGGCAGC ACCAGAGCTC chr2L:6464884-6465004 110 4.10e-05 TTTTCTGCGC CGGGGAGC AGG chr2L:7419514-7419634 29 4.10e-05 ATATTTATCG GTGGCAGC TTAAAACAGT chr2R:22525219-22525339 7 4.80e-05 ATGGGA GGGGGTGC ACGAGCAAAC chr3L:9033710-9033830 60 4.80e-05 ACTAACAAAA GTCGCCGC ACTTTCATAG chr3L:16974915-16975035 83 5.98e-05 TTTTGGATCC GGCGCAGC GCTGctttta chrX:18256661-18256781 80 5.98e-05 ACATTCAGCA GTCGGCGC GTCAGCTGGA chr2L:11809401-11809521 64 6.66e-05 GCAGTGTGAC CGGGCTGC TTTATTTTCA chr3R:20634694-20634814 55 6.66e-05 GGCGTTCTAG GCTGGCGC TGGTTAATAT chr3R:17059206-17059326 18 6.66e-05 GCATGTATTC GGTGGCGC CAGGGCACAC chr3R:23148524-23148644 74 6.66e-05 CCATGATGAT GGTGGCGC GGGTCGGAGG chrX:19522017-19522137 105 8.15e-05 CCTTGCAACC GTGGCTGC TACAGCCA chr2L:18864244-18864364 93 8.80e-05 GCTGTGGGGG CTGGGAGC GAAGGGGCAA chr3L:18790652-18790772 20 8.80e-05 TCAGCCAAGA CCTGCCGC AACATTTTTG chr2L:18003674-18003794 105 1.30e-04 GCAAATTCAA CTGGCTGC ATCGACTG chr3L:6359294-6359414 22 1.45e-04 AGGAATTGAA GCTGGAGC GGTACACTGA chr3L:3691747-3691867 29 1.45e-04 TATTCTGGTT GGGGGGGC ATTAGCAGCT chr2R:10806547-10806667 20 1.51e-04 ACTTCAACAT CTTGCCGC GTTTAGTGCA chr3R:20765847-20765967 50 1.72e-04 ATTCGCACTG GTCGCTGC ATGGCCTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9915310-9915430 3.8e-06 1_[+1]_111 chr3L:18672354-18672474 5.7e-06 66_[+1]_46 chrX:8141763-8141883 9.3e-06 22_[+1]_90 chrX:3381059-3381179 1.5e-05 31_[+1]_81 chrX:1320498-1320618 1.5e-05 8_[+1]_104 chr3L:17962397-17962517 2e-05 5_[+1]_107 chr2R:15340378-15340498 2e-05 85_[+1]_27 chrX:6030107-6030227 2.4e-05 74_[+1]_38 chr3L:13500044-13500164 2.9e-05 50_[+1]_62 chr2R:12870176-12870296 2.9e-05 100_[+1]_12 chr2R:17536276-17536396 3.4e-05 33_[+1]_79 chr2R:21659977-21660097 3.4e-05 96_[+1]_16 chr3R:14901556-14901676 3.4e-05 62_[+1]_50 chr3R:31945673-31945793 4.1e-05 91_[+1]_21 chr2L:6464884-6465004 4.1e-05 109_[+1]_3 chr2L:7419514-7419634 4.1e-05 28_[+1]_84 chr2R:22525219-22525339 4.8e-05 6_[+1]_106 chr3L:9033710-9033830 4.8e-05 59_[+1]_53 chr3L:16974915-16975035 6e-05 82_[+1]_30 chrX:18256661-18256781 6e-05 79_[+1]_33 chr2L:11809401-11809521 6.7e-05 63_[+1]_49 chr3R:20634694-20634814 6.7e-05 54_[+1]_58 chr3R:17059206-17059326 6.7e-05 17_[+1]_95 chr3R:23148524-23148644 6.7e-05 73_[+1]_39 chrX:19522017-19522137 8.1e-05 104_[+1]_8 chr2L:18864244-18864364 8.8e-05 92_[+1]_20 chr3L:18790652-18790772 8.8e-05 19_[+1]_93 chr2L:18003674-18003794 0.00013 104_[+1]_8 chr3L:6359294-6359414 0.00015 21_[+1]_91 chr3L:3691747-3691867 0.00015 28_[+1]_84 chr2R:10806547-10806667 0.00015 19_[+1]_93 chr3R:20765847-20765967 0.00017 49_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SBGGSMGC width=8 seqs=32 chr2R:9915310-9915430 ( 2) GCGGGCGC 1 chr3L:18672354-18672474 ( 67) CCGGCCGC 1 chrX:8141763-8141883 ( 23) CCGGGCGC 1 chrX:3381059-3381179 ( 32) GCGGCAGC 1 chrX:1320498-1320618 ( 9) GCGGCAGC 1 chr3L:17962397-17962517 ( 6) GGGGGAGC 1 chr2R:15340378-15340498 ( 86) GCGGGAGC 1 chrX:6030107-6030227 ( 75) GGCGGCGC 1 chr3L:13500044-13500164 ( 51) CCGGCAGC 1 chr2R:12870176-12870296 ( 101) CTGGGCGC 1 chr2R:17536276-17536396 ( 34) CCCGCCGC 1 chr2R:21659977-21660097 ( 97) CGCGCCGC 1 chr3R:14901556-14901676 ( 63) GGGGCTGC 1 chr3R:31945673-31945793 ( 92) GTGGCAGC 1 chr2L:6464884-6465004 ( 110) CGGGGAGC 1 chr2L:7419514-7419634 ( 29) GTGGCAGC 1 chr2R:22525219-22525339 ( 7) GGGGGTGC 1 chr3L:9033710-9033830 ( 60) GTCGCCGC 1 chr3L:16974915-16975035 ( 83) GGCGCAGC 1 chrX:18256661-18256781 ( 80) GTCGGCGC 1 chr2L:11809401-11809521 ( 64) CGGGCTGC 1 chr3R:20634694-20634814 ( 55) GCTGGCGC 1 chr3R:17059206-17059326 ( 18) GGTGGCGC 1 chr3R:23148524-23148644 ( 74) GGTGGCGC 1 chrX:19522017-19522137 ( 105) GTGGCTGC 1 chr2L:18864244-18864364 ( 93) CTGGGAGC 1 chr3L:18790652-18790772 ( 20) CCTGCCGC 1 chr2L:18003674-18003794 ( 105) CTGGCTGC 1 chr3L:6359294-6359414 ( 22) GCTGGAGC 1 chr3L:3691747-3691867 ( 29) GGGGGGGC 1 chr2R:10806547-10806667 ( 20) CTTGCCGC 1 chr3R:20765847-20765967 ( 50) GTCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 2.1e+002 -1164 110 181 -1164 -1164 97 95 -1 -1164 32 174 -75 -1164 -1164 249 -1164 -1164 160 140 -1164 5 132 -251 -75 -1164 -1164 249 -1164 -1164 251 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.1e+002 0.000000 0.375000 0.625000 0.000000 0.000000 0.343750 0.343750 0.312500 0.000000 0.218750 0.593750 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.531250 0.468750 0.000000 0.343750 0.437500 0.031250 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBGGSMGC MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CGT][GC]G[CG][CA]GC -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTGCGC MEME-2 width = 8 sites = 18 llr = 175 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:1::1: pos.-specific C a:a::7:7 probability G :2::a191 matrix T :::9:212 bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * * Relative 1.5 * * * * Entropy 1.3 * ****** (14.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CACTGCGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7320053-7320173 40 3.10e-06 CGAGACCCTG CACTGCGC GAAAATATAA chr3L:10940448-10940568 55 3.10e-06 CAAAATTCTG CACTGCGC ATTCTCTGGT chr3R:14901556-14901676 52 3.10e-06 CGACGTGCAA CACTGCGC CGAGGGGCTG chr2L:1668790-1668910 84 4.76e-06 TTTGCGTTTT CGCTGCGC ACGAAATAGG chrX:2012963-2013083 61 1.03e-05 CGTTTTTGCA CACTGTGC CGTGCGTCTG chr3R:24938255-24938375 99 1.03e-05 CTTTTTCAAA CACTGTGC CGTTAGAAAG chrX:18273389-18273509 88 1.03e-05 TCTCGCAGTG CACTGTGC CTTTGATGGT chr3R:7967471-7967591 39 1.35e-05 ATAGGTTCCG CACTGCGG ATACTTAATT chr2L:4403152-4403272 1 1.91e-05 . CACTGCGT TTTATTGGGA chr3L:17962397-17962517 82 1.91e-05 TCATTATACA CACTGCGT ATGAGTGATG chr3L:9380691-9380811 58 1.91e-05 AGACAACTTC CACTGCGT TGGCGTTGGA chr2L:6464884-6465004 40 2.23e-05 CTTTTATTTG CACAGCGC GGCAAGCTGC chrX:13541051-13541171 103 2.53e-05 GACTATTTCT CGCTGTGC AGCGGCAACA chrX:11806389-11806509 5 2.70e-05 CATA CGCTGCGG CACACACACA chr2R:15340378-15340498 64 3.02e-05 CAGCTGGTCA CACTGGGC AACGGGAGTA chr3R:31702035-31702155 89 3.49e-05 AGTGCGAGAC CGCAGCGC AGCAAACTGG chr3L:20403541-20403661 6 4.79e-05 CTGGT CACTGCAC TCACTTATAC chr2R:24779769-24779889 2 4.79e-05 C CACTGCTC TCTAAGCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7320053-7320173 3.1e-06 39_[+2]_73 chr3L:10940448-10940568 3.1e-06 54_[+2]_58 chr3R:14901556-14901676 3.1e-06 51_[+2]_61 chr2L:1668790-1668910 4.8e-06 83_[+2]_29 chrX:2012963-2013083 1e-05 60_[+2]_52 chr3R:24938255-24938375 1e-05 98_[+2]_14 chrX:18273389-18273509 1e-05 87_[+2]_25 chr3R:7967471-7967591 1.3e-05 38_[+2]_74 chr2L:4403152-4403272 1.9e-05 [+2]_112 chr3L:17962397-17962517 1.9e-05 81_[+2]_31 chr3L:9380691-9380811 1.9e-05 57_[+2]_55 chr2L:6464884-6465004 2.2e-05 39_[+2]_73 chrX:13541051-13541171 2.5e-05 102_[+2]_10 chrX:11806389-11806509 2.7e-05 4_[+2]_108 chr2R:15340378-15340498 3e-05 63_[+2]_49 chr3R:31702035-31702155 3.5e-05 88_[+2]_24 chr3L:20403541-20403661 4.8e-05 5_[+2]_107 chr2R:24779769-24779889 4.8e-05 1_[+2]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTGCGC width=8 seqs=18 chr2L:7320053-7320173 ( 40) CACTGCGC 1 chr3L:10940448-10940568 ( 55) CACTGCGC 1 chr3R:14901556-14901676 ( 52) CACTGCGC 1 chr2L:1668790-1668910 ( 84) CGCTGCGC 1 chrX:2012963-2013083 ( 61) CACTGTGC 1 chr3R:24938255-24938375 ( 99) CACTGTGC 1 chrX:18273389-18273509 ( 88) CACTGTGC 1 chr3R:7967471-7967591 ( 39) CACTGCGG 1 chr2L:4403152-4403272 ( 1) CACTGCGT 1 chr3L:17962397-17962517 ( 82) CACTGCGT 1 chr3L:9380691-9380811 ( 58) CACTGCGT 1 chr2L:6464884-6465004 ( 40) CACAGCGC 1 chrX:13541051-13541171 ( 103) CGCTGTGC 1 chrX:11806389-11806509 ( 5) CGCTGCGG 1 chr2R:15340378-15340498 ( 64) CACTGGGC 1 chr3R:31702035-31702155 ( 89) CGCAGCGC 1 chr3L:20403541-20403661 ( 6) CACTGCAC 1 chr2R:24779769-24779889 ( 2) CACTGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 3.7e+002 -1081 251 -1081 -1081 123 -1081 32 -1081 -1081 251 -1081 -1081 -157 -1081 -1081 149 -1081 -1081 249 -1081 -1081 204 -168 -51 -257 -1081 232 -250 -1081 204 -68 -92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.7e+002 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.055556 0.222222 0.055556 0.000000 0.888889 0.055556 0.000000 0.722222 0.111111 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCGC MEME-2 regular expression -------------------------------------------------------------------------------- C[AG]CTG[CT]GC -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF CCKCCCCG MEME-3 width = 8 sites = 3 llr = 39 E-value = 7.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aaaa: probability G ::3::::a matrix T ::7::::: bits 2.5 ** ***** 2.3 ** ***** 2.0 ** ***** 1.8 ** ***** Relative 1.5 ** ***** Entropy 1.3 ** ***** (18.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCTCCCCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23201151-23201271 101 1.61e-06 ATATGCACTT CCTCCCCG TTTTGAGCTG chr3R:23148524-23148644 18 1.61e-06 ATGCAGATCT CCTCCCCG TGCTGCCCTT chrX:19697682-19697802 100 2.52e-06 ACACACACTG CCGCCCCG CTCTCCTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23201151-23201271 1.6e-06 100_[+3]_12 chr3R:23148524-23148644 1.6e-06 17_[+3]_95 chrX:19697682-19697802 2.5e-06 99_[+3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCKCCCCG width=8 seqs=3 chr3R:23201151-23201271 ( 101) CCTCCCCG 1 chr3R:23148524-23148644 ( 18) CCTCCCCG 1 chrX:19697682-19697802 ( 100) CCGCCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 7.5e+003 -823 251 -823 -823 -823 251 -823 -823 -823 -823 90 108 -823 251 -823 -823 -823 251 -823 -823 -823 251 -823 -823 -823 251 -823 -823 -823 -823 249 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 7.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKCCCCG MEME-3 regular expression -------------------------------------------------------------------------------- CC[TG]CCCCG -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMGCTGC MEME-4 width = 8 sites = 17 llr = 161 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:51:::: pos.-specific C :9528:1a probability G 71:7:19: matrix T ::::29:: bits 2.5 * 2.3 * ** 2.0 * ** 1.8 * * ** Relative 1.5 * **** Entropy 1.3 ** ***** (13.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCTGC consensus A CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17059206-17059326 69 1.67e-06 ATACGAACAT GCCGCTGC TCGCCAATTT chr3R:8341043-8341163 74 4.82e-06 AACAATTTAA GCAGCTGC CAATAAAAAC chrX:9251425-9251545 5 4.82e-06 AAAT GCAGCTGC GGCCACAATA chr3L:12616542-12616662 27 9.55e-06 ATAAATAAAC ACCGCTGC TAAGAAATTC chr3L:19992062-19992182 99 1.27e-05 ATGTACATAC GCACCTGC GTACATATGT chr3L:3395482-3395602 87 1.27e-05 TTCTCCCAGT GCACCTGC CTCTGTGTTG chrX:5025365-5025485 30 1.85e-05 TGGACCTGCA ACAGCTGC ACTCGGCGAA chrX:17879343-17879463 32 1.85e-05 GCACAATTGT ACAGCTGC GGTTAGCACT chr2R:14986400-14986520 79 1.85e-05 CCAGCCACAC ACAGCTGC CTTGGCGATT chr3R:20765847-20765967 109 2.15e-05 TGTTATGATT GCCGTTGC CAGA chr3R:14308845-14308965 25 2.15e-05 GGCCACCGCA GCCGTTGC TCGGTAAGAT chrX:19697682-19697802 8 2.15e-05 TGTGTGC GCCGTTGC TTTCCATTCT chr3L:1683194-1683314 21 2.55e-05 AAGTCCCAAA ACCCCTGC ACCTAAACCC chr3R:23496485-23496605 36 4.51e-05 tgctgtggtA GCCACTGC AAACCCAAGG chr2L:16727869-16727989 13 5.53e-05 TCGGTAGCTT GGAGCTGC CAACGCGACT chr2L:18864244-18864364 9 5.53e-05 AGTACAAA GCCCCGGC ATCGCGTAAC chr2R:15340378-15340498 10 5.53e-05 GGATTCAAA GCAGCTCC CGGAAAACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17059206-17059326 1.7e-06 68_[+4]_44 chr3R:8341043-8341163 4.8e-06 73_[+4]_39 chrX:9251425-9251545 4.8e-06 4_[+4]_108 chr3L:12616542-12616662 9.6e-06 26_[+4]_86 chr3L:19992062-19992182 1.3e-05 98_[+4]_14 chr3L:3395482-3395602 1.3e-05 86_[+4]_26 chrX:5025365-5025485 1.9e-05 29_[+4]_83 chrX:17879343-17879463 1.9e-05 31_[+4]_81 chr2R:14986400-14986520 1.9e-05 78_[+4]_34 chr3R:20765847-20765967 2.2e-05 108_[+4]_4 chr3R:14308845-14308965 2.2e-05 24_[+4]_88 chrX:19697682-19697802 2.2e-05 7_[+4]_105 chr3L:1683194-1683314 2.5e-05 20_[+4]_92 chr3R:23496485-23496605 4.5e-05 35_[+4]_77 chr2L:16727869-16727989 5.5e-05 12_[+4]_100 chr2L:18864244-18864364 5.5e-05 8_[+4]_104 chr2R:15340378-15340498 5.5e-05 9_[+4]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMGCTGC width=8 seqs=17 chr3R:17059206-17059326 ( 69) GCCGCTGC 1 chr3R:8341043-8341163 ( 74) GCAGCTGC 1 chrX:9251425-9251545 ( 5) GCAGCTGC 1 chr3L:12616542-12616662 ( 27) ACCGCTGC 1 chr3L:19992062-19992182 ( 99) GCACCTGC 1 chr3L:3395482-3395602 ( 87) GCACCTGC 1 chrX:5025365-5025485 ( 30) ACAGCTGC 1 chrX:17879343-17879463 ( 32) ACAGCTGC 1 chr2R:14986400-14986520 ( 79) ACAGCTGC 1 chr3R:20765847-20765967 ( 109) GCCGTTGC 1 chr3R:14308845-14308965 ( 25) GCCGTTGC 1 chrX:19697682-19697802 ( 8) GCCGTTGC 1 chr3L:1683194-1683314 ( 21) ACCCCTGC 1 chr3R:23496485-23496605 ( 36) GCCACTGC 1 chr2L:16727869-16727989 ( 13) GGAGCTGC 1 chr2L:18864244-18864364 ( 9) GCCCCGGC 1 chr2R:15340378-15340498 ( 10) GCAGCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 1.0e+004 -17 -1073 199 -1073 -1073 243 -160 -1073 68 143 -1073 -1073 -249 43 199 -1073 -1073 223 -1073 -84 -1073 -1073 -160 158 -1073 -157 240 -1073 -1073 251 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.0e+004 0.294118 0.000000 0.705882 0.000000 0.000000 0.941176 0.058824 0.000000 0.529412 0.470588 0.000000 0.000000 0.058824 0.235294 0.705882 0.000000 0.000000 0.823529 0.000000 0.176471 0.000000 0.000000 0.058824 0.941176 0.000000 0.058824 0.941176 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCTGC MEME-4 regular expression -------------------------------------------------------------------------------- [GA]C[AC][GC]CTGC -------------------------------------------------------------------------------- Time 26.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCACCGC MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :aa:aa:a probability G a:::::a: matrix T :::::::: bits 2.5 *** **** 2.3 *** **** 2.0 *** **** 1.8 *** **** Relative 1.5 ******** Entropy 1.3 ******** (19.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCACCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14308845-14308965 16 1.72e-06 TCAGTCGAAG GCCACCGC AGCCGTTGCT chr2L:6081150-6081270 39 1.72e-06 CCGATTTGAT GCCACCGC TGTGAAACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14308845-14308965 1.7e-06 15_[+5]_97 chr2L:6081150-6081270 1.7e-06 38_[+5]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCACCGC width=8 seqs=2 chr3R:14308845-14308965 ( 16) GCCACCGC 1 chr2L:6081150-6081270 ( 39) GCCACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.5e+004 -765 -765 248 -765 -765 251 -765 -765 -765 251 -765 -765 159 -765 -765 -765 -765 251 -765 -765 -765 251 -765 -765 -765 -765 248 -765 -765 251 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACCGC MEME-5 regular expression -------------------------------------------------------------------------------- GCCACCGC -------------------------------------------------------------------------------- Time 32.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5904697-5904817 9.92e-01 120 chr2R:9915310-9915430 2.19e-03 1_[+1(3.83e-06)]_111 chr3L:3691747-3691867 1.63e-02 120 chr2R:14986400-14986520 3.29e-03 78_[+4(1.85e-05)]_34 chr3R:14398031-14398151 7.14e-01 120 chrX:2648088-2648208 2.53e-03 120 chr3L:8371016-8371136 9.74e-01 120 chr3L:13923925-13924045 7.02e-01 120 chrX:6030107-6030227 3.98e-02 74_[+1(2.37e-05)]_38 chr3L:18790652-18790772 7.26e-03 19_[+1(8.80e-05)]_93 chr2L:18003674-18003794 2.22e-01 120 chr3L:9380691-9380811 1.47e-03 57_[+2(1.91e-05)]_55 chr3L:2549063-2549183 9.61e-01 120 chr3R:30689751-30689871 9.79e-01 120 chrX:14750555-14750675 9.98e-01 120 chrX:2452930-2453050 7.57e-01 120 chr3R:14901556-14901676 4.19e-05 51_[+2(3.10e-06)]_3_[+1(3.42e-05)]_\ 50 chr3R:4243337-4243457 1.00e+00 120 chr3R:14730348-14730468 7.19e-02 120 chr3L:7792328-7792448 9.91e-01 120 chr2L:7909361-7909481 1.00e+00 120 chr2L:15463668-15463788 2.74e-01 120 chr2L:5429256-5429376 9.99e-01 120 chr2L:12013376-12013496 9.97e-02 120 chr3L:16177364-16177484 9.71e-01 120 chr2L:5393441-5393561 7.42e-01 120 chr3L:19035619-19035739 1.00e+00 120 chr2L:526308-526428 7.01e-01 120 chrX:19697682-19697802 1.54e-06 7_[+4(2.15e-05)]_84_[+3(2.52e-06)]_\ 13 chr2R:19187289-19187409 1.03e-01 120 chrX:3389984-3390104 9.99e-01 120 chr2L:5024904-5025024 8.10e-02 120 chr3L:2490850-2490970 4.18e-01 120 chr3L:5633728-5633848 1.00e+00 120 chr3R:14918240-14918360 7.72e-02 11_[+5(6.16e-05)]_101 chr2L:18678361-18678481 9.80e-01 120 chr3L:12420557-12420677 1.24e-01 120 chrX:1574367-1574487 2.17e-02 120 chr2L:7419514-7419634 1.39e-01 28_[+1(4.10e-05)]_84 chr3L:6359294-6359414 2.67e-01 120 chr3L:17590358-17590478 6.12e-02 120 chr3R:23148524-23148644 1.25e-04 17_[+3(1.61e-06)]_48_[+1(6.66e-05)]_\ 39 chr3R:21823199-21823319 4.16e-02 120 chrX:16930472-16930592 8.76e-01 120 chr3R:7967471-7967591 3.04e-03 38_[+2(1.35e-05)]_74 chr2L:6464884-6465004 1.51e-04 39_[+2(2.23e-05)]_62_[+1(4.10e-05)]_\ 3 chr2L:6081150-6081270 2.11e-04 38_[+5(1.72e-06)]_74 chr3R:14308845-14308965 1.84e-05 15_[+5(1.72e-06)]_1_[+4(2.15e-05)]_\ 88 chrX:6344397-6344517 1.49e-01 120 chr2L:7320661-7320781 7.17e-01 120 chr3L:9033710-9033830 7.76e-04 59_[+1(4.80e-05)]_33_[+1(9.62e-05)]_\ 12 chrX:8730454-8730574 3.60e-01 120 chr2R:15340378-15340498 1.09e-05 9_[+4(5.53e-05)]_46_[+2(3.02e-05)]_\ 14_[+1(2.01e-05)]_27 chr2L:5249911-5250031 1.45e-01 120 chrX:2604007-2604127 1.36e-01 120 chr2R:21659977-21660097 2.27e-04 96_[+1(3.42e-05)]_16 chr2R:23894893-23895013 9.66e-01 120 chr2L:11046189-11046309 2.28e-02 120 chr2R:6556906-6557026 9.80e-01 120 chrX:18273389-18273509 1.10e-02 87_[+2(1.03e-05)]_25 chr2R:14109790-14109910 7.36e-02 120 chr3L:6285555-6285675 2.20e-01 120 chrX:9082672-9082792 2.85e-01 120 chr2L:20463495-20463615 9.94e-01 120 chrX:13541051-13541171 4.91e-04 102_[+2(2.53e-05)]_10 chr2L:18559234-18559354 9.75e-02 120 chr2L:11326554-11326674 1.92e-01 120 chr2L:4965554-4965674 6.94e-01 120 chr3L:18109567-18109687 8.29e-01 120 chrX:1320498-1320618 3.35e-02 8_[+1(1.46e-05)]_104 chr3R:8029717-8029837 9.99e-01 120 chr2R:9065330-9065450 2.94e-01 120 chr3L:17962397-17962517 1.56e-03 5_[+1(2.01e-05)]_68_[+2(1.91e-05)]_\ 31 chr3R:17595203-17595323 4.37e-02 120 chr2R:22529882-22530002 5.50e-01 120 chrX:15530566-15530686 9.91e-01 120 chr2L:2361750-2361870 4.59e-01 120 chr3R:31308974-31309094 8.75e-01 120 chr3L:5637691-5637811 2.74e-01 120 chr2L:6022986-6023106 9.29e-01 120 chr3R:11565175-11565295 6.63e-01 120 chr3R:11614575-11614695 6.29e-01 120 chr2L:18864244-18864364 1.79e-04 8_[+4(5.53e-05)]_76_[+1(8.80e-05)]_\ 20 chr3L:14564547-14564667 7.15e-01 120 chrX:8895630-8895750 3.51e-01 120 chr3L:7960965-7961085 1.37e-01 120 chrX:2140637-2140757 2.44e-02 120 chr3R:27593300-27593420 8.96e-01 120 chr3R:8304008-8304128 5.23e-01 120 chr2R:22666747-22666867 2.04e-01 120 chrX:17879343-17879463 3.43e-02 31_[+4(1.85e-05)]_81 chr2R:6143627-6143747 5.82e-01 120 chr3R:27171341-27171461 8.12e-01 120 chr3L:3395482-3395602 5.04e-04 86_[+4(1.27e-05)]_26 chr3R:6950275-6950395 9.84e-01 120 chr3L:16183277-16183397 9.77e-01 120 chrX:17551091-17551211 5.33e-01 120 chr3L:664003-664123 4.04e-03 11_[+5(6.16e-05)]_101 chrX:18256661-18256781 5.91e-02 79_[+1(5.98e-05)]_33 chr2R:13935302-13935422 2.73e-01 120 chrX:20170018-20170138 6.59e-02 120 chr3R:31702035-31702155 1.12e-03 88_[+2(3.49e-05)]_24 chr3L:14031255-14031375 1.58e-01 120 chrX:18272489-18272609 9.81e-01 120 chr2L:16727869-16727989 8.25e-04 12_[+4(5.53e-05)]_100 chr2L:10615952-10616072 9.87e-01 120 chr2R:22525219-22525339 1.54e-02 6_[+1(4.80e-05)]_106 chr3R:15588792-15588912 8.74e-01 120 chr3R:25633989-25634109 7.36e-01 120 chr3L:9675561-9675681 1.92e-01 120 chrX:5025365-5025485 6.07e-03 29_[+4(1.85e-05)]_83 chrX:10324769-10324889 1.47e-01 120 chrX:768013-768133 7.33e-02 120 chr3L:5863089-5863209 9.98e-01 120 chr2L:3554077-3554197 6.89e-01 120 chr3L:16024727-16024847 8.50e-01 120 chr2L:11306227-11306347 5.07e-01 120 chr2L:8233760-8233880 9.93e-01 120 chr3R:5223349-5223469 3.57e-01 120 chr2L:10791440-10791560 1.00e+00 120 chrX:17490001-17490121 9.99e-01 120 chr3R:23496485-23496605 4.68e-04 35_[+4(4.51e-05)]_77 chr3L:21594531-21594651 1.21e-01 120 chrX:10728184-10728304 8.23e-01 120 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31_[+1(1.46e-05)]_81 chr2L:7104712-7104832 7.46e-01 120 chr2R:17536276-17536396 2.68e-05 33_[+1(3.42e-05)]_79 chrX:18783508-18783628 7.83e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************