******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9609.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:16781268-16781388 1.0000 120 chr3R:14723495-14723615 1.0000 120 chrX:18837257-18837377 1.0000 120 chr2L:9449053-9449173 1.0000 120 chr3L:19190866-19190986 1.0000 120 chrX:11391650-11391770 1.0000 120 chrX:1880336-1880456 1.0000 120 chr2R:19128028-19128148 1.0000 120 chr3R:31060355-31060475 1.0000 120 chr3L:19140497-19140617 1.0000 120 chrX:18366683-18366803 1.0000 120 chrX:6982294-6982414 1.0000 120 chr3R:11806935-11807055 1.0000 120 chr2L:889915-890035 1.0000 120 chr2R:24292811-24292931 1.0000 120 chr2L:1145087-1145207 1.0000 120 chr3L:20276750-20276870 1.0000 120 chr3L:22276791-22276911 1.0000 120 chrX:17578333-17578453 1.0000 120 chr3L:3970429-3970549 1.0000 120 chrX:5745174-5745294 1.0000 120 chr2L:12350961-12351081 1.0000 120 chr2L:14359148-14359268 1.0000 120 chr3R:11460873-11460993 1.0000 120 chrX:13370932-13371052 1.0000 120 chr3L:16544346-16544466 1.0000 120 chr2R:23601842-23601962 1.0000 120 chr3R:31636685-31636805 1.0000 120 chr2R:20641601-20641721 1.0000 120 chr2R:20529477-20529597 1.0000 120 chr3L:11408903-11409023 1.0000 120 chr2R:23668836-23668956 1.0000 120 chrX:16787140-16787260 1.0000 120 chr2R:7636710-7636830 1.0000 120 chr2L:19252527-19252647 1.0000 120 chr3L:6220381-6220501 1.0000 120 chr3R:10893540-10893660 1.0000 120 chrX:7323742-7323862 1.0000 120 chr2R:19310985-19311105 1.0000 120 chrX:6796199-6796319 1.0000 120 chrX:19164943-19165063 1.0000 120 chr2L:19233448-19233568 1.0000 120 chr2R:9941490-9941610 1.0000 120 chrX:1476982-1477102 1.0000 120 chr3R:26956490-26956610 1.0000 120 chr3R:15286137-15286257 1.0000 120 chr2L:8461923-8462043 1.0000 120 chrX:3068431-3068551 1.0000 120 chr2L:10767952-10768072 1.0000 120 chr3R:18988145-18988265 1.0000 120 chr2L:14123586-14123706 1.0000 120 chrX:8671508-8671628 1.0000 120 chr2R:9544839-9544959 1.0000 120 chr3L:13845396-13845516 1.0000 120 chrX:19665949-19666069 1.0000 120 chr3R:13016294-13016414 1.0000 120 chrX:18404989-18405109 1.0000 120 chrX:16782254-16782374 1.0000 120 chrX:19521853-19521973 1.0000 120 chrX:14602712-14602832 1.0000 120 chr3R:30022679-30022799 1.0000 120 chr2L:14499208-14499328 1.0000 120 chr3L:15235316-15235436 1.0000 120 chr3R:16573932-16574052 1.0000 120 chrX:13253185-13253305 1.0000 120 chrX:3538897-3539017 1.0000 120 chr3R:10863587-10863707 1.0000 120 chrX:2708286-2708406 1.0000 120 chr2L:3356497-3356617 1.0000 120 chr3R:31424588-31424708 1.0000 120 chrX:19492262-19492382 1.0000 120 chr2L:5225639-5225759 1.0000 120 chr3R:20833867-20833987 1.0000 120 chr2L:15254431-15254551 1.0000 120 chr2L:7154999-7155119 1.0000 120 chr3R:24598755-24598875 1.0000 120 chr3R:31810277-31810397 1.0000 120 chr2R:18277148-18277268 1.0000 120 chrX:3722329-3722449 1.0000 120 chr2L:7149007-7149127 1.0000 120 chrX:10086329-10086449 1.0000 120 chr2R:13999338-13999458 1.0000 120 chr3R:30305102-30305222 1.0000 120 chrX:10067677-10067797 1.0000 120 chr2R:8572712-8572832 1.0000 120 chr3L:13929331-13929451 1.0000 120 chr2L:21310018-21310138 1.0000 120 chr2R:7077066-7077186 1.0000 120 chr2L:18930881-18931001 1.0000 120 chr3R:21161836-21161956 1.0000 120 chr2R:16202858-16202978 1.0000 120 chr3L:20389150-20389270 1.0000 120 chrX:3714174-3714294 1.0000 120 chr3L:1549362-1549482 1.0000 120 chr2R:21514467-21514587 1.0000 120 chr3R:13078395-13078515 1.0000 120 chr3L:19914919-19915039 1.0000 120 chr3R:23817673-23817793 1.0000 120 chrX:19268807-19268927 1.0000 120 chr3L:4413147-4413267 1.0000 120 chr3R:15139421-15139541 1.0000 120 chrX:6110056-6110176 1.0000 120 chr2R:5128308-5128428 1.0000 120 chr3R:21140660-21140780 1.0000 120 chr2R:23202133-23202253 1.0000 120 chr3L:9461744-9461864 1.0000 120 chr2L:871592-871712 1.0000 120 chr3R:16655775-16655895 1.0000 120 chr3L:6904144-6904264 1.0000 120 chrX:16441369-16441489 1.0000 120 chr2L:5972161-5972281 1.0000 120 chr3L:16603014-16603134 1.0000 120 chr3R:30814978-30815098 1.0000 120 chr3R:19491129-19491249 1.0000 120 chr2L:3477358-3477478 1.0000 120 chr2R:7407745-7407865 1.0000 120 chr2R:18172320-18172440 1.0000 120 chr2L:488356-488476 1.0000 120 chr3R:13840175-13840295 1.0000 120 chr3R:8744360-8744480 1.0000 120 chr3R:9055243-9055363 1.0000 120 chr2R:14411701-14411821 1.0000 120 chrX:5671785-5671905 1.0000 120 chr3R:26436679-26436799 1.0000 120 chr3R:11244131-11244251 1.0000 120 chr2L:6956898-6957018 1.0000 120 chr2L:21658613-21658733 1.0000 120 chr3R:23028662-23028782 1.0000 120 chr2L:3444921-3445041 1.0000 120 chr2L:20734274-20734394 1.0000 120 chr2R:6636434-6636554 1.0000 120 chr2R:13966102-13966222 1.0000 120 chr3L:9028228-9028348 1.0000 120 chr2L:18859296-18859416 1.0000 120 chr3R:29265165-29265285 1.0000 120 chrX:13332938-13333058 1.0000 120 chr3L:15563605-15563725 1.0000 120 chrX:5082993-5083113 1.0000 120 chr3L:18791554-18791674 1.0000 120 chr2R:13008233-13008353 1.0000 120 chr3R:21118904-21119024 1.0000 120 chr3R:10350058-10350178 1.0000 120 chr2L:17583158-17583278 1.0000 120 chr2L:22130088-22130208 1.0000 120 chr2R:11095286-11095406 1.0000 120 chr3R:26654743-26654863 1.0000 120 chr2L:11829384-11829504 1.0000 120 chr2L:838144-838264 1.0000 120 chr2R:20832445-20832565 1.0000 120 chrX:16610699-16610819 1.0000 120 chr2L:5542352-5542472 1.0000 120 chr3R:15472807-15472927 1.0000 120 chrX:16103602-16103722 1.0000 120 chr3L:627865-627985 1.0000 120 chr2R:7012121-7012241 1.0000 120 chr3R:24333334-24333454 1.0000 120 chr2L:283257-283377 1.0000 120 chrX:15738961-15739081 1.0000 120 chr2L:3856433-3856553 1.0000 120 chr2R:9277552-9277672 1.0000 120 chr3R:19113962-19114082 1.0000 120 chr2R:23940080-23940200 1.0000 120 chr2R:11197538-11197658 1.0000 120 chr3R:26937558-26937678 1.0000 120 chrX:9137304-9137424 1.0000 120 chr3R:22023207-22023327 1.0000 120 chr2L:15039408-15039528 1.0000 120 chr3L:16129579-16129699 1.0000 120 chr3R:13030614-13030734 1.0000 120 chr3R:10648906-10649026 1.0000 120 chr2R:9103187-9103307 1.0000 120 chr3R:5856345-5856465 1.0000 120 chrX:5420828-5420948 1.0000 120 chr2R:8751607-8751727 1.0000 120 chrX:2443943-2444063 1.0000 120 chr2L:21619198-21619318 1.0000 120 chrX:10600653-10600773 1.0000 120 chr3L:21196732-21196852 1.0000 120 chr3L:20630806-20630926 1.0000 120 chrX:2136459-2136579 1.0000 120 chr3L:4186839-4186959 1.0000 120 chr3R:20948107-20948227 1.0000 120 chr3R:29725667-29725787 1.0000 120 chr3R:18215455-18215575 1.0000 120 chr2L:2494664-2494784 1.0000 120 chr3L:18784695-18784815 1.0000 120 chr3R:27557100-27557220 1.0000 120 chr3R:8801431-8801551 1.0000 120 chr2L:13833049-13833169 1.0000 120 chr2L:8554345-8554465 1.0000 120 chr2R:16178556-16178676 1.0000 120 chr3L:21445747-21445867 1.0000 120 chr3L:8110296-8110416 1.0000 120 chrX:9664588-9664708 1.0000 120 chrX:10387757-10387877 1.0000 120 chr3R:15263450-15263570 1.0000 120 chr2L:7027107-7027227 1.0000 120 chrX:19643253-19643373 1.0000 120 chrX:9193699-9193819 1.0000 120 chr3R:18366471-18366591 1.0000 120 chr3L:6054972-6055092 1.0000 120 chr3L:3164903-3165023 1.0000 120 chr3R:21850207-21850327 1.0000 120 chrX:6037401-6037521 1.0000 120 chr3L:11303971-11304091 1.0000 120 chr4:43791-43911 1.0000 120 chrX:4011024-4011144 1.0000 120 chr3L:6264585-6264705 1.0000 120 chr3R:9065083-9065203 1.0000 120 chr2R:8914013-8914133 1.0000 120 chr2L:18328887-18329007 1.0000 120 chrX:13391288-13391408 1.0000 120 chr3R:12426023-12426143 1.0000 120 chrX:7710908-7711028 1.0000 120 chr3L:7861168-7861288 1.0000 120 chr3R:17540025-17540145 1.0000 120 chr2R:7525712-7525832 1.0000 120 chr2R:25085522-25085642 1.0000 120 chr4:867075-867195 1.0000 120 chr2L:19867009-19867129 1.0000 120 chrX:2536257-2536377 1.0000 120 chr3R:16748693-16748813 1.0000 120 chr3R:5588291-5588411 1.0000 120 chr2L:2037617-2037737 1.0000 120 chr2L:8573087-8573207 1.0000 120 chr3R:8984805-8984925 1.0000 120 chr2L:17963179-17963299 1.0000 120 chr3L:6606081-6606201 1.0000 120 chr2L:20950776-20950896 1.0000 120 chr3R:5686480-5686600 1.0000 120 chr3R:9220187-9220307 1.0000 120 chr3R:25888442-25888562 1.0000 120 chrX:18370816-18370936 1.0000 120 chrX:20394201-20394321 1.0000 120 chr2L:11417686-11417806 1.0000 120 chrX:3690761-3690881 1.0000 120 chr2L:3776071-3776191 1.0000 120 chr2R:17590841-17590961 1.0000 120 chr3R:21580232-21580352 1.0000 120 chr2R:9989031-9989151 1.0000 120 chr3L:6059186-6059306 1.0000 120 chr3L:20313553-20313673 1.0000 120 chr2L:6498534-6498654 1.0000 120 chr2L:1724367-1724487 1.0000 120 chrX:1380463-1380583 1.0000 120 chr2L:20918875-20918995 1.0000 120 chr3L:16808275-16808395 1.0000 120 chr3L:13922393-13922513 1.0000 120 chr2R:10066628-10066748 1.0000 120 chr2R:8900176-8900296 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9609/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9609.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.204 G 0.198 T 0.305 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.204 G 0.198 T 0.305 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGTTGCC MEME-1 width = 8 sites = 19 llr = 189 E-value = 6.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 18::::aa probability G 91912a:: matrix T :1198::: bits 2.3 *** 2.1 * *** 1.9 * * *** 1.6 * * *** Relative 1.4 **** *** Entropy 1.2 **** *** (14.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1380463-1380583 54 6.13e-06 CACTGGCTCG GCGTTGCC ACCTCGCGGG chr2R:9989031-9989151 40 6.13e-06 CTTTCCTTTA GCGTTGCC ACTTCAATTT chr2R:17590841-17590961 41 6.13e-06 ATACATCAGA GCGTTGCC AGAGTCCAGC chr3L:21196732-21196852 44 6.13e-06 GTTTACTTAC GCGTTGCC AAACACCAGC chrX:5420828-5420948 112 6.13e-06 TTCTTAGGCG GCGTTGCC A chr2L:20734274-20734394 13 6.13e-06 CACTGTAGCA GCGTTGCC ACCTAGTACA chr2R:9941490-9941610 5 6.13e-06 TGTT GCGTTGCC ATGGCATTTC chr3L:8110296-8110416 65 1.01e-05 TGTGAAGCGC GCGTGGCC ACAGAGCTCG chr2L:11829384-11829504 55 1.01e-05 CCATTGCGCA GCGTGGCC ACCTGGTCAC chr3R:10863587-10863707 77 1.01e-05 GCCGCGGTGG GCGTGGCC ACGGGCGGGG chr2R:7525712-7525832 74 1.61e-05 AGCGCTTATG GGGTTGCC ACATCTGTTT chr3L:9461744-9461864 8 1.61e-05 CCCGCCA GGGTTGCC AACCTCCTAA chr3R:13030614-13030734 14 2.52e-05 GCGTCGACCA GTGTTGCC TAATGCTTAA chr2R:16202858-16202978 65 2.52e-05 CCAGCGATCA GTGTTGCC AATTTAGCTT chr3R:10350058-10350178 59 2.92e-05 GCCACTGGTT GCGGTGCC GTGTATTGTC chrX:5745174-5745294 53 3.86e-05 AATAGCTTTG GCTTTGCC AAAAACAATA chr3R:31060355-31060475 58 3.86e-05 TTCCTATTCC GCTTTGCC CACTTCCTCT chrX:19643253-19643373 88 4.45e-05 CCCCAGTGTA GCGTAGCC CTGGCGTTTG chrX:13332938-13333058 7 5.09e-05 TTGCGC CCGTTGCC AACGGATACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1380463-1380583 6.1e-06 53_[+1]_59 chr2R:9989031-9989151 6.1e-06 39_[+1]_73 chr2R:17590841-17590961 6.1e-06 40_[+1]_72 chr3L:21196732-21196852 6.1e-06 43_[+1]_69 chrX:5420828-5420948 6.1e-06 111_[+1]_1 chr2L:20734274-20734394 6.1e-06 12_[+1]_100 chr2R:9941490-9941610 6.1e-06 4_[+1]_108 chr3L:8110296-8110416 1e-05 64_[+1]_48 chr2L:11829384-11829504 1e-05 54_[+1]_58 chr3R:10863587-10863707 1e-05 76_[+1]_36 chr2R:7525712-7525832 1.6e-05 73_[+1]_39 chr3L:9461744-9461864 1.6e-05 7_[+1]_105 chr3R:13030614-13030734 2.5e-05 13_[+1]_99 chr2R:16202858-16202978 2.5e-05 64_[+1]_48 chr3R:10350058-10350178 2.9e-05 58_[+1]_54 chrX:5745174-5745294 3.9e-05 52_[+1]_60 chr3R:31060355-31060475 3.9e-05 57_[+1]_55 chrX:19643253-19643373 4.5e-05 87_[+1]_25 chrX:13332938-13333058 5.1e-05 6_[+1]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTTGCC width=8 seqs=19 chrX:1380463-1380583 ( 54) GCGTTGCC 1 chr2R:9989031-9989151 ( 40) GCGTTGCC 1 chr2R:17590841-17590961 ( 41) GCGTTGCC 1 chr3L:21196732-21196852 ( 44) GCGTTGCC 1 chrX:5420828-5420948 ( 112) GCGTTGCC 1 chr2L:20734274-20734394 ( 13) GCGTTGCC 1 chr2R:9941490-9941610 ( 5) GCGTTGCC 1 chr3L:8110296-8110416 ( 65) GCGTGGCC 1 chr2L:11829384-11829504 ( 55) GCGTGGCC 1 chr3R:10863587-10863707 ( 77) GCGTGGCC 1 chr2R:7525712-7525832 ( 74) GGGTTGCC 1 chr3L:9461744-9461864 ( 8) GGGTTGCC 1 chr3R:13030614-13030734 ( 14) GTGTTGCC 1 chr2R:16202858-16202978 ( 65) GTGTTGCC 1 chr3R:10350058-10350178 ( 59) GCGGTGCC 1 chrX:5745174-5745294 ( 53) GCTTTGCC 1 chr3R:31060355-31060475 ( 58) GCTTTGCC 1 chrX:19643253-19643373 ( 88) GCGTAGCC 1 chrX:13332938-13333058 ( 7) CCGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 6.7e-002 -1089 -195 225 -1089 -1089 195 -91 -153 -1089 -1089 217 -153 -1089 -1089 -191 164 -247 -1089 -33 137 -1089 -1089 233 -1089 -1089 229 -1089 -1089 -1089 229 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.7e-002 0.000000 0.052632 0.947368 0.000000 0.000000 0.789474 0.105263 0.105263 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 0.052632 0.947368 0.052632 0.000000 0.157895 0.789474 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 regular expression -------------------------------------------------------------------------------- GCGTTGCC -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCGCC MEME-2 width = 8 sites = 11 llr = 116 E-value = 4.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2::3a:98 probability G 8:a7:a12 matrix T :a:::::: bits 2.3 * ** 2.1 * ** 1.9 * *** 1.6 *** **** Relative 1.4 ******** Entropy 1.2 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGCGCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3164903-3165023 44 3.98e-06 TAACCTCCTG GTGGCGCC GTCGCAGGTG chrX:6110056-6110176 47 3.98e-06 CGGACGCCAG GTGGCGCC ACACATGTAG chr3R:16573932-16574052 105 3.98e-06 TCTGCACCAG GTGGCGCC ACTTCCGC chr3R:16748693-16748813 57 8.08e-06 ATGCAACTCA GTGCCGCC ATCTGACGTA chr3R:15263450-15263570 88 8.08e-06 TATCGATAGA GTGCCGCC CTATCGATAC chr3L:6220381-6220501 106 8.08e-06 TTGCTCCACT GTGCCGCC TCTGCCC chr3R:9055243-9055363 42 1.19e-05 TCACTCAAAC GTGGCGCG CTGGGTATCT chr2R:23601842-23601962 80 1.19e-05 TGTCCCATAG GTGGCGCG TTGGTTACGC chr3L:6264585-6264705 17 1.60e-05 TCAAGATTTA CTGGCGCC ATCTAGGGCC chr3R:30022679-30022799 35 1.60e-05 TCTATCATCC CTGGCGCC ACCTGTAGGC chr3L:6059186-6059306 15 1.99e-05 GGGTGAACGA GTGGCGGC AGGAGGCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3164903-3165023 4e-06 43_[+2]_69 chrX:6110056-6110176 4e-06 46_[+2]_66 chr3R:16573932-16574052 4e-06 104_[+2]_8 chr3R:16748693-16748813 8.1e-06 56_[+2]_56 chr3R:15263450-15263570 8.1e-06 87_[+2]_25 chr3L:6220381-6220501 8.1e-06 105_[+2]_7 chr3R:9055243-9055363 1.2e-05 41_[+2]_71 chr2R:23601842-23601962 1.2e-05 79_[+2]_33 chr3L:6264585-6264705 1.6e-05 16_[+2]_96 chr3R:30022679-30022799 1.6e-05 34_[+2]_78 chr3L:6059186-6059306 2e-05 14_[+2]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCGCC width=8 seqs=11 chr3L:3164903-3165023 ( 44) GTGGCGCC 1 chrX:6110056-6110176 ( 47) GTGGCGCC 1 chr3R:16573932-16574052 ( 105) GTGGCGCC 1 chr3R:16748693-16748813 ( 57) GTGCCGCC 1 chr3R:15263450-15263570 ( 88) GTGCCGCC 1 chr3L:6220381-6220501 ( 106) GTGCCGCC 1 chr3R:9055243-9055363 ( 42) GTGGCGCG 1 chr2R:23601842-23601962 ( 80) GTGGCGCG 1 chr3L:6264585-6264705 ( 17) CTGGCGCC 1 chr3R:30022679-30022799 ( 35) CTGGCGCC 1 chr3L:6059186-6059306 ( 15) GTGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 4.4e+002 -1010 -17 204 -1010 -1010 -1010 -1010 171 -1010 -1010 233 -1010 -1010 42 187 -1010 -1010 229 -1010 -1010 -1010 -1010 233 -1010 -1010 216 -112 -1010 -1010 200 -13 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.4e+002 0.000000 0.181818 0.818182 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.818182 0.181818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-2 regular expression -------------------------------------------------------------------------------- GTG[GC]CGCC -------------------------------------------------------------------------------- Time 13.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGKGYTG MEME-3 width = 8 sites = 18 llr = 176 E-value = 3.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9:::::: pos.-specific C 9::::7:: probability G 11a6a::a matrix T :::4:3a: bits 2.3 * * * 2.1 * * * 1.9 * * * * 1.6 * * * ** Relative 1.4 *** * ** Entropy 1.2 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGGGCTG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8914013-8914133 103 5.72e-06 GCTCGGTGTT CAGGGCTG TCAGGTGTCA chr3R:18215455-18215575 5 5.72e-06 AGAC CAGGGCTG CAACTACGAA chrX:5420828-5420948 53 5.72e-06 CATGCACAAA CAGGGCTG CCCACGCTCA chrX:19268807-19268927 94 5.72e-06 ACTGGCAAGC CAGGGCTG CTGTGGCGGT chr3L:8110296-8110416 49 1.45e-05 CTGTCTAGGC CAGTGCTG TGAAGCGCGC chr2L:15039408-15039528 20 1.45e-05 ATCCAACCAA CAGTGCTG TGAAGCGACA chr3R:13016294-13016414 12 1.45e-05 TCCAGTTGGA CAGTGCTG ACCGGGTTTT chrX:1476982-1477102 80 1.45e-05 CGAGATAAAC CAGTGCTG TAAAGCGCCG chrX:5082993-5083113 37 2.31e-05 TAGTGTTGCG CAGGGTTG CATTCGGCGG chr2L:21310018-21310138 15 2.31e-05 ACCATCCCAT CAGGGTTG TCAAGCATTT chr3R:21580232-21580352 60 2.69e-05 tcactgcttg cggggctg tcaactgctt chr3L:22276791-22276911 32 2.69e-05 AAGTTGGGAA CGGGGCTG CAAAATCAAT chr3R:15263450-15263570 38 4.01e-05 CATGGTTGGC CAGTGTTG GACACGTCAC chr3L:21196732-21196852 17 4.01e-05 GTATATGCTT CAGTGTTG CCAATCGTTG chr2L:11829384-11829504 84 4.01e-05 ATCGGCTGGC CAGTGTTG GTAAACATTA chr2R:5128308-5128428 43 4.01e-05 CGTACATCAA CAGTGTTG TGACATGTAA chr2L:20734274-20734394 36 4.56e-05 GTACAGCTGA GAGGGCTG CCAACTGGCT chrX:13370932-13371052 46 4.56e-05 GTTTGGCTGC GAGGGCTG CAGACGTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8914013-8914133 5.7e-06 102_[+3]_10 chr3R:18215455-18215575 5.7e-06 4_[+3]_108 chrX:5420828-5420948 5.7e-06 52_[+3]_60 chrX:19268807-19268927 5.7e-06 93_[+3]_19 chr3L:8110296-8110416 1.5e-05 48_[+3]_64 chr2L:15039408-15039528 1.5e-05 19_[+3]_93 chr3R:13016294-13016414 1.5e-05 11_[+3]_101 chrX:1476982-1477102 1.5e-05 79_[+3]_33 chrX:5082993-5083113 2.3e-05 36_[+3]_76 chr2L:21310018-21310138 2.3e-05 14_[+3]_98 chr3R:21580232-21580352 2.7e-05 59_[+3]_53 chr3L:22276791-22276911 2.7e-05 31_[+3]_81 chr3R:15263450-15263570 4e-05 37_[+3]_75 chr3L:21196732-21196852 4e-05 16_[+3]_96 chr2L:11829384-11829504 4e-05 83_[+3]_29 chr2R:5128308-5128428 4e-05 42_[+3]_70 chr2L:20734274-20734394 4.6e-05 35_[+3]_77 chrX:13370932-13371052 4.6e-05 45_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGKGYTG width=8 seqs=18 chr2R:8914013-8914133 ( 103) CAGGGCTG 1 chr3R:18215455-18215575 ( 5) CAGGGCTG 1 chrX:5420828-5420948 ( 53) CAGGGCTG 1 chrX:19268807-19268927 ( 94) CAGGGCTG 1 chr3L:8110296-8110416 ( 49) CAGTGCTG 1 chr2L:15039408-15039528 ( 20) CAGTGCTG 1 chr3R:13016294-13016414 ( 12) CAGTGCTG 1 chrX:1476982-1477102 ( 80) CAGTGCTG 1 chrX:5082993-5083113 ( 37) CAGGGTTG 1 chr2L:21310018-21310138 ( 15) CAGGGTTG 1 chr3R:21580232-21580352 ( 60) CGGGGCTG 1 chr3L:22276791-22276911 ( 32) CGGGGCTG 1 chr3R:15263450-15263570 ( 38) CAGTGTTG 1 chr3L:21196732-21196852 ( 17) CAGTGTTG 1 chr2L:11829384-11829504 ( 84) CAGTGTTG 1 chr2R:5128308-5128428 ( 43) CAGTGTTG 1 chr2L:20734274-20734394 ( 36) GAGGGCTG 1 chrX:13370932-13371052 ( 46) GAGGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 3.3e+001 -1081 212 -84 -1081 160 -1081 -84 -1081 -1081 -1081 233 -1081 -1081 -1081 148 55 -1081 -1081 233 -1081 -1081 171 -1081 13 -1081 -1081 -1081 171 -1081 -1081 233 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.3e+001 0.000000 0.888889 0.111111 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGYTG MEME-3 regular expression -------------------------------------------------------------------------------- CAG[GT]G[CT]TG -------------------------------------------------------------------------------- Time 20.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCAWCG MEME-4 width = 8 sites = 10 llr = 110 E-value = 4.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a5:: pos.-specific C :::a::a: probability G :aa::::a matrix T a::::5:: bits 2.3 *** ** 2.1 *** ** 1.9 **** ** 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (15.8 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCAACG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:17963179-17963299 101 1.73e-05 GATTATCGAT TGGCATCG AATACGTAGA chrX:16610699-16610819 22 1.73e-05 CCTCTATTTC TGGCATCG GCAATTATTT chr3R:29265165-29265285 4 1.73e-05 GGG TGGCATCG CCGGTGCCGG chr3L:6904144-6904264 108 1.73e-05 CGTTGCTCTC TGGCAACG CCCAC chrX:19492262-19492382 89 1.73e-05 TGAACTATTG TGGCATCG CATCCAAGGC chr3R:15286137-15286257 93 1.73e-05 TTCTCTGGGT TGGCAACG CCTGTGCAGA chrX:7323742-7323862 55 1.73e-05 CATTCGAAGA TGGCAACG CTGAAATATC chr3R:10893540-10893660 87 1.73e-05 GTGAAATGGC TGGCAACG CTAGCATGGA chr2L:14359148-14359268 95 1.73e-05 GCATCTTCGG TGGCATCG CTGTGTGCGC chrX:5745174-5745294 9 1.73e-05 CCTAGAGA TGGCAACG TGAGCCAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:17963179-17963299 1.7e-05 100_[+4]_12 chrX:16610699-16610819 1.7e-05 21_[+4]_91 chr3R:29265165-29265285 1.7e-05 3_[+4]_109 chr3L:6904144-6904264 1.7e-05 107_[+4]_5 chrX:19492262-19492382 1.7e-05 88_[+4]_24 chr3R:15286137-15286257 1.7e-05 92_[+4]_20 chrX:7323742-7323862 1.7e-05 54_[+4]_58 chr3R:10893540-10893660 1.7e-05 86_[+4]_26 chr2L:14359148-14359268 1.7e-05 94_[+4]_18 chrX:5745174-5745294 1.7e-05 8_[+4]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCAWCG width=8 seqs=10 chr2L:17963179-17963299 ( 101) TGGCATCG 1 chrX:16610699-16610819 ( 22) TGGCATCG 1 chr3R:29265165-29265285 ( 4) TGGCATCG 1 chr3L:6904144-6904264 ( 108) TGGCAACG 1 chrX:19492262-19492382 ( 89) TGGCATCG 1 chr3R:15286137-15286257 ( 93) TGGCAACG 1 chrX:7323742-7323862 ( 55) TGGCAACG 1 chr3R:10893540-10893660 ( 87) TGGCAACG 1 chr2L:14359148-14359268 ( 95) TGGCATCG 1 chrX:5745174-5745294 ( 9) TGGCAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 4.2e+002 -997 -997 -997 171 -997 -997 233 -997 -997 -997 233 -997 -997 229 -997 -997 177 -997 -997 -997 77 -997 -997 71 -997 229 -997 -997 -997 -997 233 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.2e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAWCG MEME-4 regular expression -------------------------------------------------------------------------------- TGGCA[AT]CG -------------------------------------------------------------------------------- Time 26.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGSCAVM MEME-5 width = 8 sites = 36 llr = 306 E-value = 7.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::734 pos.-specific C a::6a345 probability G ::a4::3: matrix T :a:::::1 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 *** * Relative 1.4 ***** Entropy 1.2 ****** (12.3 bits) 0.9 ****** 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCACC consensus G CAA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19643253-19643373 57 6.25e-06 GCTGGCATCC CTGCCACC ACTGACAGCT chr3R:13078395-13078515 38 6.25e-06 GTTCCTTAAT CTGCCACC AGCTTACATT chr3R:30022679-30022799 106 6.25e-06 CCAAGTCGAG CTGCCACC TTTCGCA chr2R:9941490-9941610 54 6.25e-06 GTGCCTCAGA CTGCCACC TCCTGTGGCT chr3L:20313553-20313673 92 1.84e-05 GATGGTAACA CTGGCACC ACTTCTGCGG chr3L:6606081-6606201 72 1.84e-05 AATAGCGGGA CTGCCAGC TCTGTTGGGG chr3L:16129579-16129699 3 1.84e-05 CC CTGGCACC ACTGACGCAC chr2R:7525712-7525832 47 3.17e-05 CCGGCTTGGG CTGCCAAC CATAAGAGAA chr3L:4413147-4413267 2 3.17e-05 G CTGCCAAC TACTCTGCCA chrX:19268807-19268927 38 4.07e-05 TTTATTTGTT CTGCCACA GATGTTCTTG chr3R:13016294-13016414 98 4.07e-05 TTTATAATAG CTGCCACA ACTGCTGAGT chr3L:21196732-21196852 61 4.66e-05 CAAACACCAG CTGGCAGC CATTCGGAGG chr2L:6498534-6498654 104 6.38e-05 ATCTTTCCAC CTGCCCGC AACGGTCAC chr3R:21140660-21140780 70 6.38e-05 TTTGCCGACC CTGGCAAC TCTAGTTTAT chr3R:18988145-18988265 71 6.38e-05 ATGTCTTTGT CTGCCCGC GAGAATGTAC chr2L:10767952-10768072 70 6.38e-05 TGTTCGGCTT CTGGCAAC CGTTTTTTGC chrX:13370932-13371052 82 6.38e-05 AACTTAATCG CTGCCCGC TTCATCGTGA chrX:2443943-2444063 23 8.74e-05 TGTCCTAGAG CTGGCACA GGTGTCGATA chr3R:19113962-19114082 54 8.74e-05 TAATCCTAAG CTGCCCAC AGTTTTAGAA chr3L:15235316-15235436 45 8.74e-05 CTAATTCTAC CTGCCCAC CGAGTGCAAT chrX:7323742-7323862 86 8.74e-05 CGCCACTTTG CTGCCAGA CTGTTTGATT chr3L:6054972-6055092 6 1.07e-04 TTCAT CTGCCAAA GCCCATTAGA chr3R:27557100-27557220 31 1.07e-04 ACAGTGAATG CTGCCAAA AGGAGAACGG chr3R:11244131-11244251 52 1.11e-04 GGCTGCTGTT CTGGCCGC ACTTCAAGAT chr2L:6956898-6957018 67 1.25e-04 TTCGACATCC CTGGCAGA TATCGATAGG chrX:2536257-2536377 17 1.50e-04 AAGATTTACA CTGGCAAA AACGATGGGC chr2L:7027107-7027227 43 1.50e-04 TTGCACTTTA CTGGCCCA ACCAGCACTG chr3R:29265165-29265285 30 1.50e-04 GGGTGTTACA CTGCCCGA AAAATCTATT chrX:8671508-8671628 80 1.50e-04 TTTTTTTGAC CTGGCAAA CGAAGCGTTC chr2R:20641601-20641721 31 1.50e-04 AGTACAATAG CTGGCAAA TATCCTTCCT chr2L:9449053-9449173 42 1.50e-04 TATCTTAGCA CTGGCCCA TTTGGGAAAT chrX:1380463-1380583 40 1.68e-04 CTGCACAACA CTGCCACT GGCTCGGCGT chr3R:20948107-20948227 46 1.68e-04 TTCGTTCTAT CTGCCACT TAAAATTATT chr3R:10350058-10350178 47 1.68e-04 AGCTCCCAAC CTGCCACT GGTTGCGGTG chr2L:3444921-3445041 109 1.68e-04 CCGCTTCTGT CTGCCACT AGTT chr2R:23202133-23202253 24 1.83e-04 GTAGTTATTG CTGGCCAA TCTGAGATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19643253-19643373 6.3e-06 56_[+5]_56 chr3R:13078395-13078515 6.3e-06 37_[+5]_75 chr3R:30022679-30022799 6.3e-06 105_[+5]_7 chr2R:9941490-9941610 6.3e-06 53_[+5]_59 chr3L:20313553-20313673 1.8e-05 91_[+5]_21 chr3L:6606081-6606201 1.8e-05 71_[+5]_41 chr3L:16129579-16129699 1.8e-05 2_[+5]_110 chr2R:7525712-7525832 3.2e-05 46_[+5]_66 chr3L:4413147-4413267 3.2e-05 1_[+5]_111 chrX:19268807-19268927 4.1e-05 37_[+5]_75 chr3R:13016294-13016414 4.1e-05 97_[+5]_15 chr3L:21196732-21196852 4.7e-05 60_[+5]_52 chr2L:6498534-6498654 6.4e-05 103_[+5]_9 chr3R:21140660-21140780 6.4e-05 69_[+5]_43 chr3R:18988145-18988265 6.4e-05 70_[+5]_42 chr2L:10767952-10768072 6.4e-05 69_[+5]_43 chrX:13370932-13371052 6.4e-05 81_[+5]_31 chrX:2443943-2444063 8.7e-05 22_[+5]_90 chr3R:19113962-19114082 8.7e-05 53_[+5]_59 chr3L:15235316-15235436 8.7e-05 44_[+5]_68 chrX:7323742-7323862 8.7e-05 85_[+5]_27 chr3L:6054972-6055092 0.00011 5_[+5]_107 chr3R:27557100-27557220 0.00011 30_[+5]_82 chr3R:11244131-11244251 0.00011 51_[+5]_61 chr2L:6956898-6957018 0.00013 66_[+5]_46 chrX:2536257-2536377 0.00015 16_[+5]_96 chr2L:7027107-7027227 0.00015 42_[+5]_70 chr3R:29265165-29265285 0.00015 29_[+5]_83 chrX:8671508-8671628 0.00015 79_[+5]_33 chr2R:20641601-20641721 0.00015 30_[+5]_82 chr2L:9449053-9449173 0.00015 41_[+5]_71 chrX:1380463-1380583 0.00017 39_[+5]_73 chr3R:20948107-20948227 0.00017 45_[+5]_67 chr3R:10350058-10350178 0.00017 46_[+5]_66 chr2L:3444921-3445041 0.00017 108_[+5]_4 chr2R:23202133-23202253 0.00018 23_[+5]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGSCAVM width=8 seqs=36 chrX:19643253-19643373 ( 57) CTGCCACC 1 chr3R:13078395-13078515 ( 38) CTGCCACC 1 chr3R:30022679-30022799 ( 106) CTGCCACC 1 chr2R:9941490-9941610 ( 54) CTGCCACC 1 chr3L:20313553-20313673 ( 92) CTGGCACC 1 chr3L:6606081-6606201 ( 72) CTGCCAGC 1 chr3L:16129579-16129699 ( 3) CTGGCACC 1 chr2R:7525712-7525832 ( 47) CTGCCAAC 1 chr3L:4413147-4413267 ( 2) CTGCCAAC 1 chrX:19268807-19268927 ( 38) CTGCCACA 1 chr3R:13016294-13016414 ( 98) CTGCCACA 1 chr3L:21196732-21196852 ( 61) CTGGCAGC 1 chr2L:6498534-6498654 ( 104) CTGCCCGC 1 chr3R:21140660-21140780 ( 70) CTGGCAAC 1 chr3R:18988145-18988265 ( 71) CTGCCCGC 1 chr2L:10767952-10768072 ( 70) CTGGCAAC 1 chrX:13370932-13371052 ( 82) CTGCCCGC 1 chrX:2443943-2444063 ( 23) CTGGCACA 1 chr3R:19113962-19114082 ( 54) CTGCCCAC 1 chr3L:15235316-15235436 ( 45) CTGCCCAC 1 chrX:7323742-7323862 ( 86) CTGCCAGA 1 chr3L:6054972-6055092 ( 6) CTGCCAAA 1 chr3R:27557100-27557220 ( 31) CTGCCAAA 1 chr3R:11244131-11244251 ( 52) CTGGCCGC 1 chr2L:6956898-6957018 ( 67) CTGGCAGA 1 chrX:2536257-2536377 ( 17) CTGGCAAA 1 chr2L:7027107-7027227 ( 43) CTGGCCCA 1 chr3R:29265165-29265285 ( 30) CTGCCCGA 1 chrX:8671508-8671628 ( 80) CTGGCAAA 1 chr2R:20641601-20641721 ( 31) CTGGCAAA 1 chr2L:9449053-9449173 ( 42) CTGGCCCA 1 chrX:1380463-1380583 ( 40) CTGCCACT 1 chr3R:20948107-20948227 ( 46) CTGCCACT 1 chr3R:10350058-10350178 ( 47) CTGCCACT 1 chr2L:3444921-3445041 ( 109) CTGCCACT 1 chr2R:23202133-23202253 ( 24) CTGGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 7.7e+001 -1181 229 -1181 -1181 -1181 -1181 -1181 171 -1181 -1181 233 -1181 -1181 158 97 -1181 -1181 229 -1181 -1181 130 45 -1181 -1181 19 103 33 -1181 41 129 -1181 -145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 7.7e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.388889 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.277778 0.000000 0.000000 0.333333 0.416667 0.250000 0.000000 0.388889 0.500000 0.000000 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGSCAVM MEME-5 regular expression -------------------------------------------------------------------------------- CTG[CG]C[AC][CAG][CA] -------------------------------------------------------------------------------- Time 33.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16781268-16781388 4.48e-01 120 chr3R:14723495-14723615 2.89e-01 120 chrX:18837257-18837377 3.26e-02 120 chr2L:9449053-9449173 2.30e-01 120 chr3L:19190866-19190986 1.08e-01 120 chrX:11391650-11391770 7.88e-01 120 chrX:1880336-1880456 2.22e-01 120 chr2R:19128028-19128148 2.57e-01 120 chr3R:31060355-31060475 2.96e-04 57_[+1(3.86e-05)]_55 chr3L:19140497-19140617 6.44e-02 120 chrX:18366683-18366803 8.70e-01 120 chrX:6982294-6982414 9.87e-01 120 chr3R:11806935-11807055 2.47e-01 120 chr2L:889915-890035 9.54e-01 120 chr2R:24292811-24292931 9.16e-01 120 chr2L:1145087-1145207 7.32e-01 120 chr3L:20276750-20276870 4.84e-01 120 chr3L:22276791-22276911 2.66e-03 31_[+3(2.69e-05)]_81 chrX:17578333-17578453 7.65e-01 120 chr3L:3970429-3970549 9.19e-01 120 chrX:5745174-5745294 2.10e-03 8_[+4(1.73e-05)]_36_[+1(3.86e-05)]_\ 60 chr2L:12350961-12351081 1.58e-01 120 chr2L:14359148-14359268 2.01e-02 94_[+4(1.73e-05)]_18 chr3R:11460873-11460993 9.98e-01 120 chrX:13370932-13371052 5.69e-05 45_[+3(4.56e-05)]_28_[+5(6.38e-05)]_\ 31 chr3L:16544346-16544466 9.99e-01 120 chr2R:23601842-23601962 4.71e-03 79_[+2(1.19e-05)]_33 chr3R:31636685-31636805 6.92e-01 120 chr2R:20641601-20641721 2.14e-01 120 chr2R:20529477-20529597 2.17e-01 120 chr3L:11408903-11409023 8.42e-01 120 chr2R:23668836-23668956 7.13e-02 120 chrX:16787140-16787260 4.77e-01 120 chr2R:7636710-7636830 5.34e-01 120 chr2L:19252527-19252647 6.24e-01 120 chr3L:6220381-6220501 1.91e-02 105_[+2(8.08e-06)]_7 chr3R:10893540-10893660 2.04e-03 86_[+4(1.73e-05)]_26 chrX:7323742-7323862 2.28e-03 54_[+4(1.73e-05)]_23_[+5(8.74e-05)]_\ 27 chr2R:19310985-19311105 9.63e-01 120 chrX:6796199-6796319 9.87e-01 120 chrX:19164943-19165063 9.59e-01 120 chr2L:19233448-19233568 8.64e-01 120 chr2R:9941490-9941610 4.54e-05 4_[+1(6.13e-06)]_41_[+5(6.25e-06)]_\ 59 chrX:1476982-1477102 1.08e-02 79_[+3(1.45e-05)]_33 chr3R:26956490-26956610 4.13e-01 120 chr3R:15286137-15286257 6.08e-04 92_[+4(1.73e-05)]_20 chr2L:8461923-8462043 1.83e-01 32_[+3(7.42e-05)]_80 chrX:3068431-3068551 5.44e-01 120 chr2L:10767952-10768072 1.26e-02 69_[+5(6.38e-05)]_43 chr3R:18988145-18988265 4.66e-02 70_[+5(6.38e-05)]_42 chr2L:14123586-14123706 6.68e-01 120 chrX:8671508-8671628 3.56e-01 120 chr2R:9544839-9544959 9.96e-01 120 chr3L:13845396-13845516 7.97e-01 120 chrX:19665949-19666069 9.42e-02 120 chr3R:13016294-13016414 3.00e-03 11_[+3(1.45e-05)]_78_[+5(4.07e-05)]_\ 15 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1.12e-01 120 chr3L:16808275-16808395 6.31e-01 120 chr3L:13922393-13922513 3.31e-01 120 chr2R:10066628-10066748 8.33e-01 120 chr2R:8900176-8900296 3.17e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************