******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9305.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:3894552-3894672 1.0000 120 chr3R:24555217-24555337 1.0000 120 chr3L:5356189-5356309 1.0000 120 chr3R:19672322-19672442 1.0000 120 chr3R:17622478-17622598 1.0000 120 chr2R:13536075-13536195 1.0000 120 chr2R:6946848-6946968 1.0000 120 chr2R:19715491-19715611 1.0000 120 chr3R:20891034-20891154 1.0000 120 chr2L:8481679-8481799 1.0000 120 chr3L:13212278-13212398 1.0000 120 chr3L:16349825-16349945 1.0000 120 chr3L:1397605-1397725 1.0000 120 chr2R:6948325-6948445 1.0000 120 chr3L:17339930-17340050 1.0000 120 chr2L:9236572-9236692 1.0000 120 chr2R:11357609-11357729 1.0000 120 chr2R:20232730-20232850 1.0000 120 chr3R:6823003-6823123 1.0000 120 chr2R:6164917-6165037 1.0000 120 chr2L:4419014-4419134 1.0000 120 chr2R:6161447-6161567 1.0000 120 chr2R:24373965-24374085 1.0000 120 chr3L:13249463-13249583 1.0000 120 chr2R:9661130-9661250 1.0000 120 chr3R:24915112-24915232 1.0000 120 chr2R:12334268-12334388 1.0000 120 chr2R:19802502-19802622 1.0000 120 chr3R:17657058-17657178 1.0000 120 chr2R:8683095-8683215 1.0000 120 chr2R:7070015-7070135 1.0000 120 chr3L:770276-770396 1.0000 120 chr2L:2009069-2009189 1.0000 120 chr3R:17658427-17658547 1.0000 120 chr3L:7639639-7639759 1.0000 120 chr2L:14518341-14518461 1.0000 120 chr3L:13279670-13279790 1.0000 120 chr2L:8482124-8482244 1.0000 120 chr2L:2031603-2031723 1.0000 120 chr2R:16967961-16968081 1.0000 120 chr3R:13797938-13798058 1.0000 120 chr2L:8389632-8389752 1.0000 120 chr3L:3121974-3122094 1.0000 120 chrX:14104547-14104667 1.0000 120 chrX:3819607-3819727 1.0000 120 chr3R:8861801-8861921 1.0000 120 chr3R:13798233-13798353 1.0000 120 chr3R:7451988-7452108 1.0000 120 chr2L:8679029-8679149 1.0000 120 chr2L:6799655-6799775 1.0000 120 chr2R:6178627-6178747 1.0000 120 chrX:14025608-14025728 1.0000 120 chr2L:14530869-14530989 1.0000 120 chrX:14117739-14117859 1.0000 120 chr3L:13214030-13214150 1.0000 120 chr2L:3169532-3169652 1.0000 120 chr3R:18108561-18108681 1.0000 120 chr3R:17668091-17668211 1.0000 120 chr2R:6947753-6947873 1.0000 120 chr2L:8683375-8683495 1.0000 120 chr2L:14598770-14598890 1.0000 120 chr2R:11399820-11399940 1.0000 120 chr3R:17645444-17645564 1.0000 120 chr3R:19790034-19790154 1.0000 120 chr3R:14044581-14044701 1.0000 120 chr3R:6496081-6496201 1.0000 120 chr2L:2010903-2011023 1.0000 120 chr2R:16207679-16207799 1.0000 120 chr2R:11394268-11394388 1.0000 120 chr3R:8140040-8140160 1.0000 120 chr3R:8139568-8139688 1.0000 120 chr3R:7451202-7451322 1.0000 120 chrX:14103754-14103874 1.0000 120 chr2R:6162430-6162550 1.0000 120 chr3L:8068236-8068356 1.0000 120 chr2R:17144033-17144153 1.0000 120 chr2L:8683839-8683959 1.0000 120 chr2R:18770060-18770180 1.0000 120 chr2L:1938124-1938244 1.0000 120 chr3R:17629114-17629234 1.0000 120 chr2R:11405275-11405395 1.0000 120 chr3L:3097437-3097557 1.0000 120 chr2R:6166025-6166145 1.0000 120 chrX:21304502-21304622 1.0000 120 chr3R:20890601-20890721 1.0000 120 chr2R:20229427-20229547 1.0000 120 chr3R:30248007-30248127 1.0000 120 chr3L:13211449-13211569 1.0000 120 chr3R:13363501-13363621 1.0000 120 chr2R:11404616-11404736 1.0000 120 chr2L:2462494-2462614 1.0000 120 chr2R:11660600-11660720 1.0000 120 chr3R:7475927-7476047 1.0000 120 chr3R:19802592-19802712 1.0000 120 chrX:14015420-14015540 1.0000 120 chr3R:19790894-19791014 1.0000 120 chr3L:12815817-12815937 1.0000 120 chr3R:8668651-8668771 1.0000 120 chr2L:14010578-14010698 1.0000 120 chr2R:6142389-6142509 1.0000 120 chr3L:13433683-13433803 1.0000 120 chr3L:5342018-5342138 1.0000 120 chr3L:3095679-3095799 1.0000 120 chr2L:14495761-14495881 1.0000 120 chr3R:16425036-16425156 1.0000 120 chr3L:22843177-22843297 1.0000 120 chr3R:5388135-5388255 1.0000 120 chr2R:17145195-17145315 1.0000 120 chr2R:16857164-16857284 1.0000 120 chr2R:19506402-19506522 1.0000 120 chrX:14103460-14103580 1.0000 120 chr2L:2013217-2013337 1.0000 120 chr3L:1401680-1401800 1.0000 120 chr3R:8141003-8141123 1.0000 120 chr3R:20891569-20891689 1.0000 120 chrX:21231968-21232088 1.0000 120 chr3R:20912977-20913097 1.0000 120 chr2R:13432582-13432702 1.0000 120 chr3R:17631592-17631712 1.0000 120 chr3L:5356723-5356843 1.0000 120 chr3L:13211250-13211370 1.0000 120 chr3L:1379859-1379979 1.0000 120 chr2R:6152640-6152760 1.0000 120 chr2L:7872931-7873051 1.0000 120 chr3R:17618146-17618266 1.0000 120 chr3R:7472061-7472181 1.0000 120 chr2R:6949173-6949293 1.0000 120 chr2R:21182749-21182869 1.0000 120 chrX:14014750-14014870 1.0000 120 chr2R:25075906-25076026 1.0000 120 chr2L:7872706-7872826 1.0000 120 chr2L:7711392-7711512 1.0000 120 chr3L:13432958-13433078 1.0000 120 chr2L:8619910-8620030 1.0000 120 chr3R:30248698-30248818 1.0000 120 chr3L:12814938-12815058 1.0000 120 chrX:20025010-20025130 1.0000 120 chr2R:19415181-19415301 1.0000 120 chr2R:16219961-16220081 1.0000 120 chr2R:19728804-19728924 1.0000 120 chrX:18565684-18565804 1.0000 120 chr2L:5240673-5240793 1.0000 120 chr3R:22396414-22396534 1.0000 120 chr3R:24555993-24556113 1.0000 120 chr2R:19564895-19565015 1.0000 120 chr3R:17624763-17624883 1.0000 120 chr2L:14518622-14518742 1.0000 120 chr2L:2009387-2009507 1.0000 120 chr2R:13431958-13432078 1.0000 120 chr2R:6169504-6169624 1.0000 120 chr3L:3096491-3096611 1.0000 120 chr2R:21161408-21161528 1.0000 120 chr2R:6190225-6190345 1.0000 120 chr3R:8862843-8862963 1.0000 120 chr2R:8724825-8724945 1.0000 120 chr3R:24265157-24265277 1.0000 120 chr3R:7129772-7129892 1.0000 120 chr2L:8485651-8485771 1.0000 120 chr2R:14984360-14984480 1.0000 120 chr2R:21181186-21181306 1.0000 120 chr2R:8158381-8158501 1.0000 120 chr2R:21843201-21843321 1.0000 120 chr3R:17631048-17631168 1.0000 120 chr3L:8028592-8028712 1.0000 120 chr2R:12336333-12336453 1.0000 120 chr2L:14599531-14599651 1.0000 120 chr3R:17617942-17618062 1.0000 120 chr3R:18108765-18108885 1.0000 120 chr2R:17616554-17616674 1.0000 120 chr2R:18639752-18639872 1.0000 120 chr3L:18896609-18896729 1.0000 120 chr3R:8668156-8668276 1.0000 120 chr3L:1380059-1380179 1.0000 120 chr3R:6819328-6819448 1.0000 120 chr3R:8642754-8642874 1.0000 120 chr3R:17646255-17646375 1.0000 120 chr2L:5240878-5240998 1.0000 120 chr3R:17646738-17646858 1.0000 120 chr3L:1488661-1488781 1.0000 120 chr3R:18628547-18628667 1.0000 120 chr3R:22397420-22397540 1.0000 120 chr3R:16321341-16321461 1.0000 120 chr2R:19728090-19728210 1.0000 120 chrX:5613193-5613313 1.0000 120 chr2R:6171556-6171676 1.0000 120 chr2R:11405476-11405596 1.0000 120 chr3L:769421-769541 1.0000 120 chr3L:11801558-11801678 1.0000 120 chr3L:8060266-8060386 1.0000 120 chr2R:16219489-16219609 1.0000 120 chr3R:23601445-23601565 1.0000 120 chr3R:7131026-7131146 1.0000 120 chr2R:6153544-6153664 1.0000 120 chr3L:8060718-8060838 1.0000 120 chr2R:17392121-17392241 1.0000 120 chr2R:13430856-13430976 1.0000 120 chr2R:12336533-12336653 1.0000 120 chr3L:22847771-22847891 1.0000 120 chr2R:13437781-13437901 1.0000 120 chr3L:14674165-14674285 1.0000 120 chr2R:19414518-19414638 1.0000 120 chr2R:21848456-21848576 1.0000 120 chr3L:16221923-16222043 1.0000 120 chr3R:17617623-17617743 1.0000 120 chrX:5524636-5524756 1.0000 120 chr3L:3096282-3096402 1.0000 120 chr2R:25076638-25076758 1.0000 120 chr2L:8570781-8570901 1.0000 120 chr3L:8066042-8066162 1.0000 120 chr2R:6152849-6152969 1.0000 120 chr2R:13431065-13431185 1.0000 120 chr2R:19725805-19725925 1.0000 120 chr3R:12206492-12206612 1.0000 120 chr3L:8060485-8060605 1.0000 120 chrX:3827507-3827627 1.0000 120 chr3L:18618244-18618364 1.0000 120 chr3R:17620097-17620217 1.0000 120 chr2R:17604621-17604741 1.0000 120 chr3R:16321599-16321719 1.0000 120 chr3L:1380410-1380530 1.0000 120 chrX:5832179-5832299 1.0000 120 chr2R:11652453-11652573 1.0000 120 chr3R:23730394-23730514 1.0000 120 chr2R:13430244-13430364 1.0000 120 chr3L:11772906-11773026 1.0000 120 chr2L:8541610-8541730 1.0000 120 chr2R:7070811-7070931 1.0000 120 chr2L:3173085-3173205 1.0000 120 chr3R:12322599-12322719 1.0000 120 chr3R:17619848-17619968 1.0000 120 chr2L:2460018-2460138 1.0000 120 chrX:21231374-21231494 1.0000 120 chr3R:6908215-6908335 1.0000 120 chr2L:8478087-8478207 1.0000 120 chr2R:22686939-22687059 1.0000 120 chr3R:26947545-26947665 1.0000 120 chr2R:9541710-9541830 1.0000 120 chr2L:8290643-8290763 1.0000 120 chr2R:23072443-23072563 1.0000 120 chrX:14016920-14017040 1.0000 120 chrX:14017133-14017253 1.0000 120 chr3R:24263731-24263851 1.0000 120 chr3R:17615698-17615818 1.0000 120 chr2L:13383226-13383346 1.0000 120 chr3L:2273651-2273771 1.0000 120 chr3L:11773870-11773990 1.0000 120 chr3R:20604826-20604946 1.0000 120 chr3R:19790234-19790354 1.0000 120 chr2R:20657843-20657963 1.0000 120 chr3R:17647551-17647671 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9305/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9305.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.28 C 0.217 G 0.216 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.28 C 0.217 G 0.216 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-1 width = 8 sites = 27 llr = 293 E-value = 1.3e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a::::a matrix T a:::a::: bits 2.2 ** * 2.0 ** * * 1.8 * ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2273651-2273771 100 1.42e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCA chr2L:8290643-8290763 91 1.42e-05 TCTGCCCGGG TAGCTCAG TCGGTAGAGC chr3R:12206492-12206612 90 1.42e-05 TGAGCCTCTT TAGCTCAG TGGCAGAGCA chr3L:3096282-3096402 94 1.42e-05 CGTGGGGATA TAGCTCAG TGGTAGAGCA chr2R:13437781-13437901 92 1.42e-05 CGCGGCCCAT TAGCTCAG TTGGTTAGAG chr2R:17392121-17392241 101 1.42e-05 AACGGGGATG TAGCTCAG TGGTAGAGCG chr3R:16321341-16321461 69 1.42e-05 GTGGCCGAAA TAGCTCAG TTGGGAGAGC chr2R:8158381-8158501 81 1.42e-05 GAAGGCCCAT TAGCTCAG TTGGTTAGAG chr2L:7711392-7711512 91 1.42e-05 ACGCCTTCGA TAGCTCAG TTGGTAGAGC chr2R:25075906-25076026 106 1.42e-05 CAAGGGGACG TAGCTCAG TGGTAGA chr3R:20891569-20891689 96 1.42e-05 ATGGCCTCTT TAGCTCAG TGGTAGAGCG chr3L:3095679-3095799 65 1.42e-05 ACTGGGGATA TAGCTCAG TGGTAGAGCA chr3R:19790894-19791014 85 1.42e-05 TCAGGGGATG TAGCTCAG ATGGTAGAGC chr2L:2462494-2462614 106 1.42e-05 AGACCTTCGA TAGCTCAG TTGGTAG chr2R:11404616-11404736 90 1.42e-05 CAAGCCTCTT TAGCTCAG TGGCAGAGCA chr3R:20890601-20890721 104 1.42e-05 GTAGCCTCTT TAGCTCAG TGGTAGAGC chr3L:3097437-3097557 89 1.42e-05 AGAGGGGATA TAGCTCAG TGGTAGAGCA chr2R:11394268-11394388 92 1.42e-05 AGAGCCTCTT TAGCTCAG TGGCAGAGCA chr3R:17668091-17668211 103 1.42e-05 GACGGGGATG TAGCTCAG ATGGTAGAGC chr3R:13797938-13798058 22 1.42e-05 GTCGCCGAAA TAGCTCAG TTGGGAGAGC chr3R:17657058-17657178 94 1.42e-05 ATGGGGGATG TAGCTCAG ATGGTAGAGC chr2R:19802502-19802622 96 1.42e-05 TGTGCCCGGC TAGCTCAG TCGGTAGAGC chr3R:20891034-20891154 95 1.42e-05 ATCGCCTCTT TAGCTCAG TGGTAGAGCG chr2R:19715491-19715611 81 1.42e-05 CAAGGCCCAT TAGCTCAG TTGGTTAGAG chr3R:17622478-17622598 75 1.42e-05 ATCGGGGATG TAGCTCAG ATGGTAGAGC chr2R:8724825-8724945 92 2.51e-05 CCAGCCGCGG TGGCTCAG TCGTCTAAGG chr2R:6178627-6178747 88 3.93e-05 TGCCTGATCT TAGCTGAG CTACAGCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2273651-2273771 1.4e-05 99_[+1]_13 chr2L:8290643-8290763 1.4e-05 90_[+1]_22 chr3R:12206492-12206612 1.4e-05 89_[+1]_23 chr3L:3096282-3096402 1.4e-05 93_[+1]_19 chr2R:13437781-13437901 1.4e-05 91_[+1]_21 chr2R:17392121-17392241 1.4e-05 100_[+1]_12 chr3R:16321341-16321461 1.4e-05 68_[+1]_44 chr2R:8158381-8158501 1.4e-05 80_[+1]_32 chr2L:7711392-7711512 1.4e-05 90_[+1]_22 chr2R:25075906-25076026 1.4e-05 105_[+1]_7 chr3R:20891569-20891689 1.4e-05 95_[+1]_17 chr3L:3095679-3095799 1.4e-05 64_[+1]_48 chr3R:19790894-19791014 1.4e-05 84_[+1]_28 chr2L:2462494-2462614 1.4e-05 105_[+1]_7 chr2R:11404616-11404736 1.4e-05 89_[+1]_23 chr3R:20890601-20890721 1.4e-05 103_[+1]_9 chr3L:3097437-3097557 1.4e-05 88_[+1]_24 chr2R:11394268-11394388 1.4e-05 91_[+1]_21 chr3R:17668091-17668211 1.4e-05 102_[+1]_10 chr3R:13797938-13798058 1.4e-05 21_[+1]_91 chr3R:17657058-17657178 1.4e-05 93_[+1]_19 chr2R:19802502-19802622 1.4e-05 95_[+1]_17 chr3R:20891034-20891154 1.4e-05 94_[+1]_18 chr2R:19715491-19715611 1.4e-05 80_[+1]_32 chr3R:17622478-17622598 1.4e-05 74_[+1]_38 chr2R:8724825-8724945 2.5e-05 91_[+1]_21 chr2R:6178627-6178747 3.9e-05 87_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=27 chr3L:2273651-2273771 ( 100) TAGCTCAG 1 chr2L:8290643-8290763 ( 91) TAGCTCAG 1 chr3R:12206492-12206612 ( 90) TAGCTCAG 1 chr3L:3096282-3096402 ( 94) TAGCTCAG 1 chr2R:13437781-13437901 ( 92) TAGCTCAG 1 chr2R:17392121-17392241 ( 101) TAGCTCAG 1 chr3R:16321341-16321461 ( 69) TAGCTCAG 1 chr2R:8158381-8158501 ( 81) TAGCTCAG 1 chr2L:7711392-7711512 ( 91) TAGCTCAG 1 chr2R:25075906-25076026 ( 106) TAGCTCAG 1 chr3R:20891569-20891689 ( 96) TAGCTCAG 1 chr3L:3095679-3095799 ( 65) TAGCTCAG 1 chr3R:19790894-19791014 ( 85) TAGCTCAG 1 chr2L:2462494-2462614 ( 106) TAGCTCAG 1 chr2R:11404616-11404736 ( 90) TAGCTCAG 1 chr3R:20890601-20890721 ( 104) TAGCTCAG 1 chr3L:3097437-3097557 ( 89) TAGCTCAG 1 chr2R:11394268-11394388 ( 92) TAGCTCAG 1 chr3R:17668091-17668211 ( 103) TAGCTCAG 1 chr3R:13797938-13798058 ( 22) TAGCTCAG 1 chr3R:17657058-17657178 ( 94) TAGCTCAG 1 chr2R:19802502-19802622 ( 96) TAGCTCAG 1 chr3R:20891034-20891154 ( 95) TAGCTCAG 1 chr2R:19715491-19715611 ( 81) TAGCTCAG 1 chr3R:17622478-17622598 ( 75) TAGCTCAG 1 chr2R:8724825-8724945 ( 92) TGGCTCAG 1 chr2R:6178627-6178747 ( 88) TAGCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.83018 E= 1.3e-021 -1140 -1140 -1140 180 178 -1140 -254 -1140 -1140 -1140 221 -1140 -1140 221 -1140 -1140 -1140 -1140 -1140 180 -1140 215 -254 -1140 184 -1140 -1140 -1140 -1140 -1140 221 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.3e-021 0.000000 0.000000 0.000000 1.000000 0.962963 0.000000 0.037037 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.962963 0.037037 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGAGCTA MEME-2 width = 8 sites = 24 llr = 264 E-value = 3.7e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C a::::a:: probability G ::a:a::: matrix T :a::::a: bits 2.2 * * ** 2.0 * * ** 1.8 ****** * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2460018-2460138 12 1.42e-05 GCTCTACCAA CTGAGCTA TCGAAGGTGA chr3R:12322599-12322719 21 1.42e-05 TGCTCTGCCA CTGAGCTA AAGAGGCTCA chr2R:13430244-13430364 97 1.42e-05 CTCTAACCAA CTGAGCTA ATGGGCCATG chr3R:17620097-17620217 105 1.42e-05 GCTCTACCAT CTGAGCTA CATCCCCG chr3R:17646738-17646858 3 1.42e-05 AT CTGAGCTA CATCCCCGAG chr3R:8642754-8642874 25 1.42e-05 GCTCTACCAA CTGAGCTA TCGAAGGTTT chr3R:8668156-8668276 38 1.42e-05 GCTCTACCAA CTGAGCTA TCGAAGGGGG chr3L:8028592-8028712 12 1.42e-05 GCTCTACCAT CTGAGCTA CATCCCCACA chr3R:17631048-17631168 52 1.42e-05 GCTCTACCAT CTGAGCTA CATCCCCTTC chr2R:6949173-6949293 18 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCAGG chr2R:6142389-6142509 41 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCAGT chr3R:8668651-8668771 40 1.42e-05 GCTCTACCAA CTGAGCTA TCGAAGGTTG chrX:21304502-21304622 19 1.42e-05 GCTCTACCAA CTGAGCTA TCGAAGGTGC chr2R:11405275-11405395 14 1.42e-05 TGCTCTGCCA CTGAGCTA AAGAGGCGAA chr2R:11399820-11399940 7 1.42e-05 CTGCCA CTGAGCTA AAGAGGCCCG chr2R:6947753-6947873 43 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCATG chr3R:13798233-13798353 23 1.42e-05 GCTCTCCCAA CTGAGCTA TTTCGGCTCC chr3R:17658427-17658547 12 1.42e-05 GCTCTACCAT CTGAGCTA CATCCCCGTG chr2R:6164917-6165037 17 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCCAC chr3R:6823003-6823123 18 1.42e-05 GCTCTACCGA CTGAGCTA TCCGGGCATG chr2R:6948325-6948445 17 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCAGG chr2R:6946848-6946968 18 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCACT chr2R:13536075-13536195 28 1.42e-05 GCTCTACCGA CTGAGCTA GCCGGGCACT chr3R:13363501-13363621 11 2.49e-05 AATACAACCC CTGAGCCA AAATATCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2460018-2460138 1.4e-05 11_[+2]_101 chr3R:12322599-12322719 1.4e-05 20_[+2]_92 chr2R:13430244-13430364 1.4e-05 96_[+2]_16 chr3R:17620097-17620217 1.4e-05 104_[+2]_8 chr3R:17646738-17646858 1.4e-05 2_[+2]_110 chr3R:8642754-8642874 1.4e-05 24_[+2]_88 chr3R:8668156-8668276 1.4e-05 37_[+2]_75 chr3L:8028592-8028712 1.4e-05 11_[+2]_101 chr3R:17631048-17631168 1.4e-05 51_[+2]_61 chr2R:6949173-6949293 1.4e-05 17_[+2]_95 chr2R:6142389-6142509 1.4e-05 40_[+2]_72 chr3R:8668651-8668771 1.4e-05 39_[+2]_73 chrX:21304502-21304622 1.4e-05 18_[+2]_94 chr2R:11405275-11405395 1.4e-05 13_[+2]_99 chr2R:11399820-11399940 1.4e-05 6_[+2]_106 chr2R:6947753-6947873 1.4e-05 42_[+2]_70 chr3R:13798233-13798353 1.4e-05 22_[+2]_90 chr3R:17658427-17658547 1.4e-05 11_[+2]_101 chr2R:6164917-6165037 1.4e-05 16_[+2]_96 chr3R:6823003-6823123 1.4e-05 17_[+2]_95 chr2R:6948325-6948445 1.4e-05 16_[+2]_96 chr2R:6946848-6946968 1.4e-05 17_[+2]_95 chr2R:13536075-13536195 1.4e-05 27_[+2]_85 chr3R:13363501-13363621 2.5e-05 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGAGCTA width=8 seqs=24 chr2L:2460018-2460138 ( 12) CTGAGCTA 1 chr3R:12322599-12322719 ( 21) CTGAGCTA 1 chr2R:13430244-13430364 ( 97) CTGAGCTA 1 chr3R:17620097-17620217 ( 105) CTGAGCTA 1 chr3R:17646738-17646858 ( 3) CTGAGCTA 1 chr3R:8642754-8642874 ( 25) CTGAGCTA 1 chr3R:8668156-8668276 ( 38) CTGAGCTA 1 chr3L:8028592-8028712 ( 12) CTGAGCTA 1 chr3R:17631048-17631168 ( 52) CTGAGCTA 1 chr2R:6949173-6949293 ( 18) CTGAGCTA 1 chr2R:6142389-6142509 ( 41) CTGAGCTA 1 chr3R:8668651-8668771 ( 40) CTGAGCTA 1 chrX:21304502-21304622 ( 19) CTGAGCTA 1 chr2R:11405275-11405395 ( 14) CTGAGCTA 1 chr2R:11399820-11399940 ( 7) CTGAGCTA 1 chr2R:6947753-6947873 ( 43) CTGAGCTA 1 chr3R:13798233-13798353 ( 23) CTGAGCTA 1 chr3R:17658427-17658547 ( 12) CTGAGCTA 1 chr2R:6164917-6165037 ( 17) CTGAGCTA 1 chr3R:6823003-6823123 ( 18) CTGAGCTA 1 chr2R:6948325-6948445 ( 17) CTGAGCTA 1 chr2R:6946848-6946968 ( 18) CTGAGCTA 1 chr2R:13536075-13536195 ( 28) CTGAGCTA 1 chr3R:13363501-13363621 ( 11) CTGAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.85841 E= 3.7e-018 -1123 221 -1123 -1123 -1123 -1123 -1123 180 -1123 -1123 221 -1123 184 -1123 -1123 -1123 -1123 -1123 221 -1123 -1123 221 -1123 -1123 -1123 -238 -1123 174 184 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.7e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.041667 0.000000 0.958333 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-2 regular expression -------------------------------------------------------------------------------- CTGAGCTA -------------------------------------------------------------------------------- Time 13.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYAGAGC MEME-3 width = 8 sites = 41 llr = 381 E-value = 6.2e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::719:: pos.-specific C ::43:1:a probability G a9::9:a: matrix T :15::::: bits 2.2 * ** 2.0 * ** 1.8 ** * ** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ** ***** (13.4 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTAGAGC consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2273651-2273771 109 1.87e-05 ATAGCTCAGG GGTAGAGC ATTC chr2L:8290643-8290763 7 1.87e-05 CAGAAT GGCAGAGC GCCAGAATTG chr3L:18618244-18618364 79 1.87e-05 CATAGCACAA GGCAGAGC GATGGAGTGA chr3R:12206492-12206612 99 1.87e-05 TTAGCTCAGT GGCAGAGC ACTGGTCTTG chr3L:3096282-3096402 103 1.87e-05 ATAGCTCAGT GGTAGAGC ATTCGACTGC chr2R:17392121-17392241 110 1.87e-05 GTAGCTCAGT GGTAGAGC GCT chr2L:7711392-7711512 101 1.87e-05 TAGCTCAGTT GGTAGAGC GGTGGACTGT chr3R:20891569-20891689 105 1.87e-05 TTAGCTCAGT GGTAGAGC GTTGGTCT chr3L:3095679-3095799 74 1.87e-05 ATAGCTCAGT GGTAGAGC ATTCGACTGC chr3R:19790894-19791014 95 1.87e-05 TAGCTCAGAT GGTAGAGC GCTCGCTTAG chr2R:11404616-11404736 99 1.87e-05 TTAGCTCAGT GGCAGAGC ACTGGTCTTG chr3R:20890601-20890721 113 1.87e-05 TTAGCTCAGT GGTAGAGC chr3L:3097437-3097557 98 1.87e-05 ATAGCTCAGT GGTAGAGC ATTCGACTGC chr2R:11394268-11394388 101 1.87e-05 TTAGCTCAGT GGCAGAGC ACTGGTCTTG chr3R:17668091-17668211 113 1.87e-05 TAGCTCAGAT GGTAGAGC chr3R:17657058-17657178 104 1.87e-05 TAGCTCAGAT GGTAGAGC GCTCGCTTA chr2R:19802502-19802622 106 1.87e-05 TAGCTCAGTC GGTAGAGC ATGAGAC chr3R:20891034-20891154 104 1.87e-05 TTAGCTCAGT GGTAGAGC GTTGGTCTC chr3R:17622478-17622598 85 1.87e-05 TAGCTCAGAT GGTAGAGC GCTCGCTTAG chr3L:769421-769541 40 3.31e-05 CTATTTTCAG GGTCGAGC GTCTTGTTTC chr3R:24265157-24265277 110 3.31e-05 CAGTCAGGTT GGCCGAGC GGT chr2R:13432582-13432702 94 3.31e-05 GTGTCAGGAT GGCCGAGC GGTCTAAGGC chr2R:17145195-17145315 113 3.31e-05 ATGGTAGCGT GGCCGAGC chr3L:5342018-5342138 74 3.31e-05 AAGCAGTCGT GGCCGAGC GGTTAAGGCG chr2R:18770060-18770180 79 3.31e-05 ATGGTAGCGT GGCCGAGC GGTCTAAGGC chr2L:3169532-3169652 58 3.31e-05 GAGCAGTCGT GGCCGAGC GGTTAAGGCG chr3L:13214030-13214150 87 3.31e-05 ATGTCAGGAT GGCCGAGC GGTCTAAGGC chrX:14104547-14104667 110 3.31e-05 AAGCAGTCGT GGCCGAGC GGT chr3R:16321341-16321461 79 4.11e-05 TAGCTCAGTT GGGAGAGC GTTAGACTGA chr3R:13797938-13798058 32 4.11e-05 TAGCTCAGTT GGGAGAGC GTTAGACTGA chr3R:17647551-17647671 62 5.56e-05 GAAACGAGGT GGCAGCGC CGAAACCCTA chr2R:20657843-20657963 64 5.56e-05 GTGGCGCAAC GGTAGCGC GTCTGACTCC chr3L:16349825-16349945 109 5.56e-05 TGGCGCAGTT GGCAGCGC GTAA chr3R:22397420-22397540 101 7.98e-05 ACTGCTTGCC GGTAAAGC AAGCGGTCCA chr2R:25075906-25076026 40 7.98e-05 GACGTATTGC GGTAAAGC AGTTTTTCTT chr3R:17618146-17618266 74 7.98e-05 TTTCCAACTA GGCAAAGC AAGGCATTTT chr2R:13437781-13437901 103 1.05e-04 AGCTCAGTTG GTTAGAGC GTCGTGCTAA chr2R:8158381-8158501 92 1.05e-04 AGCTCAGTTG GTTAGAGC GTCGTGCTAA chr2R:19715491-19715611 92 1.05e-04 AGCTCAGTTG GTTAGAGC GTCGTGCTAA chr3R:19790034-19790154 38 1.41e-04 TCCTTTAAGA GGCCAAGC AGCTAGGTTT chr2R:6166025-6166145 11 1.60e-04 AGGGTCGTGG GTTCGAGC CCCACGTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2273651-2273771 1.9e-05 108_[+3]_4 chr2L:8290643-8290763 1.9e-05 6_[+3]_106 chr3L:18618244-18618364 1.9e-05 78_[+3]_34 chr3R:12206492-12206612 1.9e-05 98_[+3]_14 chr3L:3096282-3096402 1.9e-05 102_[+3]_10 chr2R:17392121-17392241 1.9e-05 109_[+3]_3 chr2L:7711392-7711512 1.9e-05 100_[+3]_12 chr3R:20891569-20891689 1.9e-05 104_[+3]_8 chr3L:3095679-3095799 1.9e-05 73_[+3]_39 chr3R:19790894-19791014 1.9e-05 94_[+3]_18 chr2R:11404616-11404736 1.9e-05 98_[+3]_14 chr3R:20890601-20890721 1.9e-05 112_[+3] chr3L:3097437-3097557 1.9e-05 97_[+3]_15 chr2R:11394268-11394388 1.9e-05 100_[+3]_12 chr3R:17668091-17668211 1.9e-05 112_[+3] chr3R:17657058-17657178 1.9e-05 103_[+3]_9 chr2R:19802502-19802622 1.9e-05 105_[+3]_7 chr3R:20891034-20891154 1.9e-05 103_[+3]_9 chr3R:17622478-17622598 1.9e-05 84_[+3]_28 chr3L:769421-769541 3.3e-05 39_[+3]_73 chr3R:24265157-24265277 3.3e-05 109_[+3]_3 chr2R:13432582-13432702 3.3e-05 93_[+3]_19 chr2R:17145195-17145315 3.3e-05 112_[+3] chr3L:5342018-5342138 3.3e-05 73_[+3]_39 chr2R:18770060-18770180 3.3e-05 78_[+3]_34 chr2L:3169532-3169652 3.3e-05 57_[+3]_55 chr3L:13214030-13214150 3.3e-05 86_[+3]_26 chrX:14104547-14104667 3.3e-05 109_[+3]_3 chr3R:16321341-16321461 4.1e-05 78_[+3]_34 chr3R:13797938-13798058 4.1e-05 31_[+3]_81 chr3R:17647551-17647671 5.6e-05 61_[+3]_51 chr2R:20657843-20657963 5.6e-05 63_[+3]_49 chr3L:16349825-16349945 5.6e-05 108_[+3]_4 chr3R:22397420-22397540 8e-05 100_[+3]_12 chr2R:25075906-25076026 8e-05 39_[+3]_73 chr3R:17618146-17618266 8e-05 73_[+3]_39 chr2R:13437781-13437901 0.0001 102_[+3]_10 chr2R:8158381-8158501 0.0001 91_[+3]_21 chr2R:19715491-19715611 0.0001 91_[+3]_21 chr3R:19790034-19790154 0.00014 37_[+3]_75 chr2R:6166025-6166145 0.00016 10_[+3]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYAGAGC width=8 seqs=41 chr3L:2273651-2273771 ( 109) GGTAGAGC 1 chr2L:8290643-8290763 ( 7) GGCAGAGC 1 chr3L:18618244-18618364 ( 79) GGCAGAGC 1 chr3R:12206492-12206612 ( 99) GGCAGAGC 1 chr3L:3096282-3096402 ( 103) GGTAGAGC 1 chr2R:17392121-17392241 ( 110) GGTAGAGC 1 chr2L:7711392-7711512 ( 101) GGTAGAGC 1 chr3R:20891569-20891689 ( 105) GGTAGAGC 1 chr3L:3095679-3095799 ( 74) GGTAGAGC 1 chr3R:19790894-19791014 ( 95) GGTAGAGC 1 chr2R:11404616-11404736 ( 99) GGCAGAGC 1 chr3R:20890601-20890721 ( 113) GGTAGAGC 1 chr3L:3097437-3097557 ( 98) GGTAGAGC 1 chr2R:11394268-11394388 ( 101) GGCAGAGC 1 chr3R:17668091-17668211 ( 113) GGTAGAGC 1 chr3R:17657058-17657178 ( 104) GGTAGAGC 1 chr2R:19802502-19802622 ( 106) GGTAGAGC 1 chr3R:20891034-20891154 ( 104) GGTAGAGC 1 chr3R:17622478-17622598 ( 85) GGTAGAGC 1 chr3L:769421-769541 ( 40) GGTCGAGC 1 chr3R:24265157-24265277 ( 110) GGCCGAGC 1 chr2R:13432582-13432702 ( 94) GGCCGAGC 1 chr2R:17145195-17145315 ( 113) GGCCGAGC 1 chr3L:5342018-5342138 ( 74) GGCCGAGC 1 chr2R:18770060-18770180 ( 79) GGCCGAGC 1 chr2L:3169532-3169652 ( 58) GGCCGAGC 1 chr3L:13214030-13214150 ( 87) GGCCGAGC 1 chrX:14104547-14104667 ( 110) GGCCGAGC 1 chr3R:16321341-16321461 ( 79) GGGAGAGC 1 chr3R:13797938-13798058 ( 32) GGGAGAGC 1 chr3R:17647551-17647671 ( 62) GGCAGCGC 1 chr2R:20657843-20657963 ( 64) GGTAGCGC 1 chr3L:16349825-16349945 ( 109) GGCAGCGC 1 chr3R:22397420-22397540 ( 101) GGTAAAGC 1 chr2R:25075906-25076026 ( 40) GGTAAAGC 1 chr3R:17618146-17618266 ( 74) GGCAAAGC 1 chr2R:13437781-13437901 ( 103) GTTAGAGC 1 chr2R:8158381-8158501 ( 92) GTTAGAGC 1 chr2R:19715491-19715611 ( 92) GTTAGAGC 1 chr3R:19790034-19790154 ( 38) GGCCAAGC 1 chr2R:6166025-6166145 ( 11) GTTCGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9173 E= 6.2e-017 -1200 -1200 221 -1200 -1200 -1200 206 -156 -1200 94 -215 90 138 31 -1200 -1200 -152 -1200 206 -1200 173 -156 -1200 -1200 -1200 -1200 221 -1200 -1200 221 -1200 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 6.2e-017 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.902439 0.097561 0.000000 0.414634 0.048780 0.536585 0.731707 0.268293 0.000000 0.000000 0.097561 0.000000 0.902439 0.000000 0.926829 0.073171 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYAGAGC MEME-3 regular expression -------------------------------------------------------------------------------- GG[TC][AC]GAGC -------------------------------------------------------------------------------- Time 19.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTRCC MEME-4 width = 8 sites = 35 llr = 334 E-value = 1.0e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::61: pos.-specific C :a:a::9a probability G a:3:13:: matrix T ::7:9::: bits 2.2 ** * * 2.0 ** * * 1.8 ** * * 1.5 ** * ** Relative 1.3 ** ** ** Entropy 1.1 ***** ** (13.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTACC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2460018-2460138 2 1.10e-05 C GCTCTACC AACTGAGCTA chr3R:17620097-17620217 95 1.10e-05 CTAAGCGAGC GCTCTACC ATCTGAGCTA chr3R:8642754-8642874 15 1.10e-05 ACAGTCCACC GCTCTACC AACTGAGCTA chr3R:8668156-8668276 28 1.10e-05 ACAGTCCACC GCTCTACC AACTGAGCTA chr3L:8028592-8028712 2 1.10e-05 C GCTCTACC ATCTGAGCTA chr3R:17631048-17631168 42 1.10e-05 CTAAGCGAGC GCTCTACC ATCTGAGCTA chr2R:6949173-6949293 8 1.10e-05 GTCTCAT GCTCTACC GACTGAGCTA chr2R:6142389-6142509 31 1.10e-05 AGAGTCTCAT GCTCTACC GACTGAGCTA chr3R:8668651-8668771 30 1.10e-05 ACAGTCCACC GCTCTACC AACTGAGCTA chrX:21304502-21304622 9 1.10e-05 AGTCCACC GCTCTACC AACTGAGCTA chr2R:6947753-6947873 33 1.10e-05 AGAGTCTCAT GCTCTACC GACTGAGCTA chr3R:17658427-17658547 2 1.10e-05 C GCTCTACC ATCTGAGCTA chr2R:6164917-6165037 7 1.10e-05 TCTCAT GCTCTACC GACTGAGCTA chr3R:6823003-6823123 8 1.10e-05 GTCCAAT GCTCTACC GACTGAGCTA chr2R:6948325-6948445 7 1.10e-05 TCTCAT GCTCTACC GACTGAGCTA chr2R:6946848-6946968 8 1.10e-05 GTCTCAT GCTCTACC GACTGAGCTA chr2R:13536075-13536195 18 1.10e-05 AGAGTCTCAT GCTCTACC GACTGAGCTA chr3R:12322599-12322719 12 1.96e-05 CAAGACCAGT GCTCTGCC ACTGAGCTAA chr2R:11405275-11405395 5 1.96e-05 CAGT GCTCTGCC ACTGAGCTAA chr2L:4419014-4419134 11 2.79e-05 GGAGTCGGAC GCGCTACC GTTGCGCCAC chrX:5832179-5832299 14 3.43e-05 CTAACTGTAT GCGCTGCC GCCGGCGGCG chr2R:6153544-6153664 40 3.43e-05 GGAGGCTGTT GCGCTGCC TCCGTCAAGT chr2R:11660600-11660720 11 3.43e-05 TGAGACTTAC GCGCTGCC AACTGCGCCA chr3R:13363501-13363621 36 3.43e-05 GTTGTTAGAA GCGCTGCC AAATGCTCAG chr3R:6496081-6496201 6 3.43e-05 CTTAC GCGCTGCC AACTGCGCCA chr3L:3121974-3122094 16 3.43e-05 TGAGACTTAC GCGCTGCC AACTGCGCCA chr2R:14984360-14984480 33 4.90e-05 GCCTTAGACC GCTCGGCC ACGCTACCCA chr3R:30248007-30248127 21 4.90e-05 GCCTTAGACC GCTCGGCC ACGCTGCCGC chrX:14117739-14117859 56 4.90e-05 CGCCTTAACC GCTCGGCC ACGACTGCTT chrX:14025608-14025728 24 4.90e-05 CGCCTTAACC GCTCGGCC ACGACTGCTT chr2R:13430244-13430364 86 6.33e-05 TTAGCACGAC GCTCTAAC CAACTGAGCT chr3R:13798233-13798353 13 9.39e-05 TCAGTCTAAC GCTCTCCC AACTGAGCTA chr2R:6152640-6152760 11 1.05e-04 ACAGCCGAAC GCGCTAAC CAATTGCGCC chr3R:20912977-20913097 26 1.05e-04 ACAGCAGATC GCGCTAAC CGGAGCACCA chr3R:8139568-8139688 13 1.05e-04 ACAGCCGAAC GCGCTAAC CAATTGCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2460018-2460138 1.1e-05 1_[+4]_111 chr3R:17620097-17620217 1.1e-05 94_[+4]_18 chr3R:8642754-8642874 1.1e-05 14_[+4]_98 chr3R:8668156-8668276 1.1e-05 27_[+4]_85 chr3L:8028592-8028712 1.1e-05 1_[+4]_111 chr3R:17631048-17631168 1.1e-05 41_[+4]_71 chr2R:6949173-6949293 1.1e-05 7_[+4]_105 chr2R:6142389-6142509 1.1e-05 30_[+4]_82 chr3R:8668651-8668771 1.1e-05 29_[+4]_83 chrX:21304502-21304622 1.1e-05 8_[+4]_104 chr2R:6947753-6947873 1.1e-05 32_[+4]_80 chr3R:17658427-17658547 1.1e-05 1_[+4]_111 chr2R:6164917-6165037 1.1e-05 6_[+4]_106 chr3R:6823003-6823123 1.1e-05 7_[+4]_105 chr2R:6948325-6948445 1.1e-05 6_[+4]_106 chr2R:6946848-6946968 1.1e-05 7_[+4]_105 chr2R:13536075-13536195 1.1e-05 17_[+4]_95 chr3R:12322599-12322719 2e-05 11_[+4]_101 chr2R:11405275-11405395 2e-05 4_[+4]_108 chr2L:4419014-4419134 2.8e-05 10_[+4]_102 chrX:5832179-5832299 3.4e-05 13_[+4]_99 chr2R:6153544-6153664 3.4e-05 39_[+4]_73 chr2R:11660600-11660720 3.4e-05 10_[+4]_102 chr3R:13363501-13363621 3.4e-05 35_[+4]_77 chr3R:6496081-6496201 3.4e-05 5_[+4]_107 chr3L:3121974-3122094 3.4e-05 15_[+4]_97 chr2R:14984360-14984480 4.9e-05 32_[+4]_80 chr3R:30248007-30248127 4.9e-05 20_[+4]_92 chrX:14117739-14117859 4.9e-05 55_[+4]_57 chrX:14025608-14025728 4.9e-05 23_[+4]_89 chr2R:13430244-13430364 6.3e-05 85_[+4]_27 chr3R:13798233-13798353 9.4e-05 12_[+4]_100 chr2R:6152640-6152760 0.0001 10_[+4]_102 chr3R:20912977-20913097 0.0001 25_[+4]_87 chr3R:8139568-8139688 0.0001 12_[+4]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTRCC width=8 seqs=35 chr2L:2460018-2460138 ( 2) GCTCTACC 1 chr3R:17620097-17620217 ( 95) GCTCTACC 1 chr3R:8642754-8642874 ( 15) GCTCTACC 1 chr3R:8668156-8668276 ( 28) GCTCTACC 1 chr3L:8028592-8028712 ( 2) GCTCTACC 1 chr3R:17631048-17631168 ( 42) GCTCTACC 1 chr2R:6949173-6949293 ( 8) GCTCTACC 1 chr2R:6142389-6142509 ( 31) GCTCTACC 1 chr3R:8668651-8668771 ( 30) GCTCTACC 1 chrX:21304502-21304622 ( 9) GCTCTACC 1 chr2R:6947753-6947873 ( 33) GCTCTACC 1 chr3R:17658427-17658547 ( 2) GCTCTACC 1 chr2R:6164917-6165037 ( 7) GCTCTACC 1 chr3R:6823003-6823123 ( 8) GCTCTACC 1 chr2R:6948325-6948445 ( 7) GCTCTACC 1 chr2R:6946848-6946968 ( 8) GCTCTACC 1 chr2R:13536075-13536195 ( 18) GCTCTACC 1 chr3R:12322599-12322719 ( 12) GCTCTGCC 1 chr2R:11405275-11405395 ( 5) GCTCTGCC 1 chr2L:4419014-4419134 ( 11) GCGCTACC 1 chrX:5832179-5832299 ( 14) GCGCTGCC 1 chr2R:6153544-6153664 ( 40) GCGCTGCC 1 chr2R:11660600-11660720 ( 11) GCGCTGCC 1 chr3R:13363501-13363621 ( 36) GCGCTGCC 1 chr3R:6496081-6496201 ( 6) GCGCTGCC 1 chr3L:3121974-3122094 ( 16) GCGCTGCC 1 chr2R:14984360-14984480 ( 33) GCTCGGCC 1 chr3R:30248007-30248127 ( 21) GCTCGGCC 1 chrX:14117739-14117859 ( 56) GCTCGGCC 1 chrX:14025608-14025728 ( 24) GCTCGGCC 1 chr2R:13430244-13430364 ( 86) GCTCTAAC 1 chr3R:13798233-13798353 ( 13) GCTCTCCC 1 chr2R:6152640-6152760 ( 11) GCGCTAAC 1 chr3R:20912977-20913097 ( 26) GCGCTAAC 1 chr3R:8139568-8139688 ( 13) GCGCTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 1.0e-013 -1177 -1177 221 -1177 -1177 221 -1177 -1177 -1177 -1177 40 132 -1177 221 -1177 -1177 -1177 -1177 -92 163 117 -292 67 -1177 -129 203 -1177 -1177 -1177 221 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.0e-013 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.114286 0.885714 0.628571 0.028571 0.342857 0.000000 0.114286 0.885714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-4 regular expression -------------------------------------------------------------------------------- GC[TG]CT[AG]CC -------------------------------------------------------------------------------- Time 25.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGYGYA MEME-5 width = 8 sites = 38 llr = 339 E-value = 2.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C ::::626: probability G a:aa:5:: matrix T :a::424: bits 2.2 * ** 2.0 * ** 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 ***** * (12.9 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGCGCA consensus TCT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20657843-20657963 54 8.24e-06 AATTGACTCC GTGGCGCA ACGGTAGCGC chrX:3827507-3827627 15 8.24e-06 CGAAGAGAGT GTGGCGCA GAATTCTTCG chr2R:19725805-19725925 106 8.24e-06 TATAAGCAGA GTGGCGCA GTGGAAG chr3L:769421-769541 88 8.24e-06 AACAGCTCCA GTGGCGCA ATTGGTTAGC chr2R:21181186-21181306 104 8.24e-06 TAACGACTCC GTGGCGCA ACGGTAGCG chr2R:6169504-6169624 109 8.24e-06 AAGCGGTCCT GTGGCGCA ATGG chr2R:6162430-6162550 95 8.24e-06 ATCTGCCTCC GTGGCGCA ATTGGTTAGC chr3L:770276-770396 93 8.24e-06 CATTGCTCCA GTGGCGCA ATTGGTTAGC chr2R:9661130-9661250 101 8.24e-06 TATGAGCAGA GTGGCGCA GTGGAAGCGT chr2R:24373965-24374085 104 8.24e-06 AATAGCCTCC GTGGCGCA ATTGGTTAG chr2R:6161447-6161567 94 8.24e-06 AAAGGGTCCT GTGGCGCA ATGGATAACG chr3L:16349825-16349945 98 8.24e-06 CAAAGCCTCG GTGGCGCA GTTGGCAGCG chr3R:20912977-20913097 7 3.00e-05 TTTTTG GTGGTGCA TACAGCAGAT chrX:14017133-14017253 85 3.83e-05 AACCGACCGT GTGGCCCA ATGGATAAGG chrX:14016920-14017040 96 3.83e-05 AACTGACCGT GTGGCCCA ATGGATAAGG chr2R:9541710-9541830 68 6.37e-05 CTGTAAAGTA GTGGTGTA AATTGTATGT chr3R:16321599-16321719 97 6.37e-05 ACGTGTTTCC GTGGTGTA GTGGTTATCA chr3R:7129772-7129892 98 6.37e-05 CGTGGCGTCG GTGGTGTA ATGGTTAGCA chr2R:19415181-19415301 96 6.37e-05 AACTGTTTCC GTGGTGTA GCGGTTATCA chr3L:13432958-13433078 96 6.37e-05 AACTGTTTCC GTGGTGTA GCGGTTATCA chr3R:18108561-18108681 82 6.37e-05 TGCGGCGTCG GTGGTGTA ATGGTTAGCA chr3R:8862843-8862963 96 8.55e-05 AAGCGACCGT GTGGCCTA ATGGATAAGG chrX:14014750-14014870 70 8.55e-05 AACTGACCGT GTGGCCTA ATGGATAAGG chr3R:5388135-5388255 99 8.55e-05 ACCGGACCGT GTGGCCTA AAGGATAAGG chr2L:6799655-6799775 95 8.55e-05 ACATGCCCCA GTGGCCTA ATGGATAAGG chr3R:8861801-8861921 85 8.55e-05 AACTGACCGT GTGGCCTA ATGGATAAGG chr2L:8389632-8389752 81 8.55e-05 CGACAAGTGT GTGGTCCA AACGTGTTGT chr2R:21182749-21182869 113 1.14e-04 AAGAGCATCG GTGGTTCA chr3L:12815817-12815937 75 1.14e-04 TACTCTTTCG GTGGTTCA ATCGTCAAGT chr3R:19802592-19802712 104 1.14e-04 ATGTGGCGCC GTGGCTTA GTTGGTTAA chr2R:20229427-20229547 60 1.14e-04 GCAAGCATCG GTGGTTCA GTGGTAGAAT chrX:14103754-14103874 50 1.14e-04 TTGTTTAAAC GTGGCTTA AGTTGCCAAG chr2R:16967961-16968081 53 1.14e-04 ACAAGCATCG GTGGTTCA GTGGTAGAAT chr2L:2031603-2031723 95 1.14e-04 ATAAGCATCG GTGGTTCA GTGGTAGAAT chr2R:20232730-20232850 73 1.14e-04 CCAAGCATCG GTGGTTCA GTGGTAGAAT chr3L:22843177-22843297 101 1.29e-04 GGATGGCCGA GTGGTCTA AGGCGCTGCG chr3L:13279670-13279790 104 1.48e-04 AGGAGGTAGC GTGGTTTA AGGCACCAG chrX:14117739-14117859 83 1.59e-04 TGATGGGTGG GTGGCGAA AATGAGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20657843-20657963 8.2e-06 53_[+5]_59 chrX:3827507-3827627 8.2e-06 14_[+5]_98 chr2R:19725805-19725925 8.2e-06 105_[+5]_7 chr3L:769421-769541 8.2e-06 87_[+5]_25 chr2R:21181186-21181306 8.2e-06 103_[+5]_9 chr2R:6169504-6169624 8.2e-06 108_[+5]_4 chr2R:6162430-6162550 8.2e-06 94_[+5]_18 chr3L:770276-770396 8.2e-06 92_[+5]_20 chr2R:9661130-9661250 8.2e-06 100_[+5]_12 chr2R:24373965-24374085 8.2e-06 103_[+5]_9 chr2R:6161447-6161567 8.2e-06 93_[+5]_19 chr3L:16349825-16349945 8.2e-06 97_[+5]_15 chr3R:20912977-20913097 3e-05 6_[+5]_106 chrX:14017133-14017253 3.8e-05 84_[+5]_28 chrX:14016920-14017040 3.8e-05 95_[+5]_17 chr2R:9541710-9541830 6.4e-05 67_[+5]_45 chr3R:16321599-16321719 6.4e-05 96_[+5]_16 chr3R:7129772-7129892 6.4e-05 97_[+5]_15 chr2R:19415181-19415301 6.4e-05 95_[+5]_17 chr3L:13432958-13433078 6.4e-05 95_[+5]_17 chr3R:18108561-18108681 6.4e-05 81_[+5]_31 chr3R:8862843-8862963 8.6e-05 95_[+5]_17 chrX:14014750-14014870 8.6e-05 69_[+5]_43 chr3R:5388135-5388255 8.6e-05 98_[+5]_14 chr2L:6799655-6799775 8.6e-05 94_[+5]_18 chr3R:8861801-8861921 8.6e-05 84_[+5]_28 chr2L:8389632-8389752 8.6e-05 80_[+5]_32 chr2R:21182749-21182869 0.00011 112_[+5] chr3L:12815817-12815937 0.00011 74_[+5]_38 chr3R:19802592-19802712 0.00011 103_[+5]_9 chr2R:20229427-20229547 0.00011 59_[+5]_53 chrX:14103754-14103874 0.00011 49_[+5]_63 chr2R:16967961-16968081 0.00011 52_[+5]_60 chr2L:2031603-2031723 0.00011 94_[+5]_18 chr2R:20232730-20232850 0.00011 72_[+5]_40 chr3L:22843177-22843297 0.00013 100_[+5]_12 chr3L:13279670-13279790 0.00015 103_[+5]_9 chrX:14117739-14117859 0.00016 82_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGYGYA width=8 seqs=38 chr2R:20657843-20657963 ( 54) GTGGCGCA 1 chrX:3827507-3827627 ( 15) GTGGCGCA 1 chr2R:19725805-19725925 ( 106) GTGGCGCA 1 chr3L:769421-769541 ( 88) GTGGCGCA 1 chr2R:21181186-21181306 ( 104) GTGGCGCA 1 chr2R:6169504-6169624 ( 109) GTGGCGCA 1 chr2R:6162430-6162550 ( 95) GTGGCGCA 1 chr3L:770276-770396 ( 93) GTGGCGCA 1 chr2R:9661130-9661250 ( 101) GTGGCGCA 1 chr2R:24373965-24374085 ( 104) GTGGCGCA 1 chr2R:6161447-6161567 ( 94) GTGGCGCA 1 chr3L:16349825-16349945 ( 98) GTGGCGCA 1 chr3R:20912977-20913097 ( 7) GTGGTGCA 1 chrX:14017133-14017253 ( 85) GTGGCCCA 1 chrX:14016920-14017040 ( 96) GTGGCCCA 1 chr2R:9541710-9541830 ( 68) GTGGTGTA 1 chr3R:16321599-16321719 ( 97) GTGGTGTA 1 chr3R:7129772-7129892 ( 98) GTGGTGTA 1 chr2R:19415181-19415301 ( 96) GTGGTGTA 1 chr3L:13432958-13433078 ( 96) GTGGTGTA 1 chr3R:18108561-18108681 ( 82) GTGGTGTA 1 chr3R:8862843-8862963 ( 96) GTGGCCTA 1 chrX:14014750-14014870 ( 70) GTGGCCTA 1 chr3R:5388135-5388255 ( 99) GTGGCCTA 1 chr2L:6799655-6799775 ( 95) GTGGCCTA 1 chr3R:8861801-8861921 ( 85) GTGGCCTA 1 chr2L:8389632-8389752 ( 81) GTGGTCCA 1 chr2R:21182749-21182869 ( 113) GTGGTTCA 1 chr3L:12815817-12815937 ( 75) GTGGTTCA 1 chr3R:19802592-19802712 ( 104) GTGGCTTA 1 chr2R:20229427-20229547 ( 60) GTGGTTCA 1 chrX:14103754-14103874 ( 50) GTGGCTTA 1 chr2R:16967961-16968081 ( 53) GTGGTTCA 1 chr2L:2031603-2031723 ( 95) GTGGTTCA 1 chr2R:20232730-20232850 ( 73) GTGGTTCA 1 chr3L:22843177-22843297 ( 101) GTGGTCTA 1 chr3L:13279670-13279790 ( 104) GTGGTTTA 1 chrX:14117739-14117859 ( 83) GTGGCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 2.4e-007 -1189 -1189 221 -1189 -1189 -1189 -1189 180 -1189 -1189 221 -1189 -1189 -1189 221 -1189 -1189 142 -1189 55 -1189 13 128 -28 -341 142 -1189 46 184 -1189 -1189 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.4e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578947 0.000000 0.421053 0.000000 0.236842 0.526316 0.236842 0.026316 0.578947 0.000000 0.394737 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYGYA MEME-5 regular expression -------------------------------------------------------------------------------- GTGG[CT][GCT][CT]A -------------------------------------------------------------------------------- Time 31.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3894552-3894672 9.58e-02 120 chr3R:24555217-24555337 7.54e-01 120 chr3L:5356189-5356309 6.79e-01 120 chr3R:19672322-19672442 8.15e-01 120 chr3R:17622478-17622598 3.69e-05 74_[+1(1.42e-05)]_2_[+3(1.87e-05)]_\ 28 chr2R:13536075-13536195 1.13e-03 17_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 85 chr2R:6946848-6946968 9.16e-04 7_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 95 chr2R:19715491-19715611 2.01e-03 80_[+1(1.42e-05)]_32 chr3R:20891034-20891154 1.92e-03 94_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 9 chr2L:8481679-8481799 6.79e-01 120 chr3L:13212278-13212398 7.76e-01 120 chr3L:16349825-16349945 7.47e-04 97_[+5(8.24e-06)]_3_[+3(5.56e-05)]_\ 4 chr3L:1397605-1397725 8.69e-01 120 chr2R:6948325-6948445 1.02e-03 6_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 96 chr3L:17339930-17340050 8.26e-01 120 chr2L:9236572-9236692 2.16e-01 120 chr2R:11357609-11357729 1.93e-01 120 chr2R:20232730-20232850 3.71e-02 120 chr3R:6823003-6823123 1.62e-03 7_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 95 chr2R:6164917-6165037 6.94e-04 6_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 96 chr2L:4419014-4419134 4.07e-02 10_[+4(2.79e-05)]_102 chr2R:6161447-6161567 1.32e-02 93_[+5(8.24e-06)]_19 chr2R:24373965-24374085 4.42e-02 103_[+5(8.24e-06)]_9 chr3L:13249463-13249583 7.81e-01 120 chr2R:9661130-9661250 1.17e-02 100_[+5(8.24e-06)]_12 chr3R:24915112-24915232 9.77e-01 120 chr2R:12334268-12334388 9.83e-01 120 chr2R:19802502-19802622 1.78e-05 95_[+1(1.42e-05)]_2_[+3(1.87e-05)]_\ 7 chr3R:17657058-17657178 2.34e-04 93_[+1(1.42e-05)]_2_[+3(1.87e-05)]_\ 9 chr2R:8683095-8683215 3.99e-01 120 chr2R:7070015-7070135 3.68e-01 120 chr3L:770276-770396 2.56e-03 92_[+5(8.24e-06)]_20 chr2L:2009069-2009189 5.79e-01 120 chr3R:17658427-17658547 6.28e-04 1_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 101 chr3L:7639639-7639759 6.67e-01 120 chr2L:14518341-14518461 2.77e-01 120 chr3L:13279670-13279790 7.42e-02 120 chr2L:8482124-8482244 4.91e-01 120 chr2L:2031603-2031723 4.60e-02 120 chr2R:16967961-16968081 3.49e-02 120 chr3R:13797938-13798058 4.97e-03 21_[+1(1.42e-05)]_2_[+3(4.11e-05)]_\ 81 chr2L:8389632-8389752 7.00e-02 80_[+5(8.55e-05)]_32 chr3L:3121974-3122094 3.86e-02 15_[+4(3.43e-05)]_97 chrX:14104547-14104667 9.50e-03 109_[+3(3.31e-05)]_3 chrX:3819607-3819727 2.49e-01 120 chr3R:8861801-8861921 9.47e-02 84_[+5(8.55e-05)]_28 chr3R:13798233-13798353 5.62e-04 12_[+4(9.39e-05)]_2_[+2(1.42e-05)]_\ 90 chr3R:7451988-7452108 9.18e-01 120 chr2L:8679029-8679149 9.13e-01 120 chr2L:6799655-6799775 2.84e-01 94_[+5(8.55e-05)]_18 chr2R:6178627-6178747 1.49e-03 90_[+2(1.42e-05)]_22 chrX:14025608-14025728 1.20e-01 23_[+4(4.90e-05)]_89 chr2L:14530869-14530989 3.88e-01 120 chrX:14117739-14117859 1.34e-02 55_[+4(4.90e-05)]_57 chr3L:13214030-13214150 1.81e-02 86_[+3(3.31e-05)]_26 chr2L:3169532-3169652 1.13e-03 57_[+3(3.31e-05)]_55 chr3R:18108561-18108681 2.33e-02 81_[+5(6.37e-05)]_31 chr3R:17668091-17668211 1.04e-03 102_[+1(1.42e-05)]_2_[+3(1.87e-05)] chr2R:6947753-6947873 1.13e-03 32_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 70 chr2L:8683375-8683495 9.43e-01 120 chr2L:14598770-14598890 3.64e-01 120 chr2R:11399820-11399940 1.07e-02 6_[+2(1.42e-05)]_106 chr3R:17645444-17645564 4.26e-01 120 chr3R:19790034-19790154 2.39e-01 120 chr3R:14044581-14044701 7.92e-01 120 chr3R:6496081-6496201 3.72e-02 5_[+4(3.43e-05)]_107 chr2L:2010903-2011023 5.61e-01 120 chr2R:16207679-16207799 2.55e-01 120 chr2R:11394268-11394388 3.47e-04 91_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 12 chr3R:8140040-8140160 9.87e-01 120 chr3R:8139568-8139688 2.42e-01 120 chr3R:7451202-7451322 8.75e-01 120 chrX:14103754-14103874 3.51e-03 76_[+1(3.93e-05)]_36 chr2R:6162430-6162550 4.75e-03 94_[+5(8.24e-06)]_18 chr3L:8068236-8068356 3.98e-01 120 chr2R:17144033-17144153 1.25e-02 120 chr2L:8683839-8683959 5.49e-01 120 chr2R:18770060-18770180 3.71e-03 78_[+3(3.31e-05)]_34 chr2L:1938124-1938244 3.91e-01 120 chr3R:17629114-17629234 1.00e+00 120 chr2R:11405275-11405395 1.16e-03 4_[+4(1.96e-05)]_1_[+2(1.42e-05)]_\ 99 chr3L:3097437-3097557 1.99e-03 88_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 15 chr2R:6166025-6166145 2.85e-01 120 chrX:21304502-21304622 3.53e-04 8_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 94 chr3R:20890601-20890721 1.07e-04 103_[+1(1.42e-05)]_1_[+3(1.87e-05)] chr2R:20229427-20229547 3.92e-02 120 chr3R:30248007-30248127 2.03e-02 20_[+4(4.90e-05)]_92 chr3L:13211449-13211569 6.35e-01 120 chr3R:13363501-13363621 8.52e-04 10_[+2(2.49e-05)]_17_[+4(3.43e-05)]_\ 77 chr2R:11404616-11404736 5.55e-04 89_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 14 chr2L:2462494-2462614 4.58e-02 105_[+1(1.42e-05)]_7 chr2R:11660600-11660720 5.74e-03 10_[+4(3.43e-05)]_102 chr3R:7475927-7476047 6.56e-01 120 chr3R:19802592-19802712 6.82e-03 120 chrX:14015420-14015540 7.54e-02 120 chr3R:19790894-19791014 3.54e-04 84_[+1(1.42e-05)]_2_[+3(1.87e-05)]_\ 18 chr3L:12815817-12815937 4.86e-02 120 chr3R:8668651-8668771 1.27e-03 29_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 73 chr2L:14010578-14010698 6.28e-01 120 chr2R:6142389-6142509 1.13e-03 30_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 72 chr3L:13433683-13433803 2.81e-01 120 chr3L:5342018-5342138 7.79e-03 73_[+3(3.31e-05)]_39 chr3L:3095679-3095799 1.03e-03 64_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 39 chr2L:14495761-14495881 3.79e-01 120 chr3R:16425036-16425156 3.12e-01 120 chr3L:22843177-22843297 1.28e-02 120 chr3R:5388135-5388255 1.08e-01 98_[+5(8.55e-05)]_14 chr2R:17145195-17145315 2.79e-03 112_[+3(3.31e-05)] chr2R:16857164-16857284 3.37e-02 120 chr2R:19506402-19506522 1.45e-01 120 chrX:14103460-14103580 7.40e-01 120 chr2L:2013217-2013337 1.06e-01 120 chr3L:1401680-1401800 9.99e-01 120 chr3R:8141003-8141123 9.75e-01 120 chr3R:20891569-20891689 1.38e-03 95_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 8 chrX:21231968-21232088 8.90e-01 120 chr3R:20912977-20913097 6.38e-03 6_[+5(3.00e-05)]_106 chr2R:13432582-13432702 2.78e-02 93_[+3(3.31e-05)]_19 chr3R:17631592-17631712 6.82e-01 120 chr3L:5356723-5356843 5.04e-01 120 chr3L:13211250-13211370 6.79e-01 120 chr3L:1379859-1379979 2.37e-01 120 chr2R:6152640-6152760 1.85e-01 120 chr2L:7872931-7873051 7.73e-01 120 chr3R:17618146-17618266 2.73e-01 73_[+3(7.98e-05)]_39 chr3R:7472061-7472181 7.09e-01 120 chr2R:6949173-6949293 8.81e-04 7_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 95 chr2R:21182749-21182869 4.38e-01 120 chrX:14014750-14014870 7.36e-02 69_[+5(8.55e-05)]_43 chr2R:25075906-25076026 1.55e-03 39_[+3(7.98e-05)]_58_[+1(1.42e-05)]_\ 7 chr2L:7872706-7872826 4.34e-01 120 chr2L:7711392-7711512 1.25e-03 33_[+3(7.98e-05)]_49_[+1(1.42e-05)]_\ 2_[+3(1.87e-05)]_12 chr3L:13432958-13433078 5.80e-02 95_[+5(6.37e-05)]_17 chr2L:8619910-8620030 9.82e-01 120 chr3R:30248698-30248818 8.70e-01 120 chr3L:12814938-12815058 6.68e-01 120 chrX:20025010-20025130 5.22e-01 120 chr2R:19415181-19415301 2.25e-01 95_[+5(6.37e-05)]_17 chr2R:16219961-16220081 3.36e-01 120 chr2R:19728804-19728924 2.63e-01 120 chrX:18565684-18565804 4.20e-01 120 chr2L:5240673-5240793 8.67e-01 120 chr3R:22396414-22396534 9.99e-01 120 chr3R:24555993-24556113 6.21e-01 120 chr2R:19564895-19565015 4.95e-01 120 chr3R:17624763-17624883 4.66e-01 120 chr2L:14518622-14518742 4.51e-01 120 chr2L:2009387-2009507 9.94e-01 120 chr2R:13431958-13432078 3.03e-01 120 chr2R:6169504-6169624 3.25e-02 108_[+5(8.24e-06)]_4 chr3L:3096491-3096611 6.30e-01 120 chr2R:21161408-21161528 7.25e-01 120 chr2R:6190225-6190345 9.98e-01 120 chr3R:8862843-8862963 4.14e-02 95_[+5(8.55e-05)]_17 chr2R:8724825-8724945 4.48e-03 91_[+1(2.51e-05)]_21 chr3R:24265157-24265277 4.76e-02 109_[+3(3.31e-05)]_3 chr3R:7129772-7129892 1.79e-01 97_[+5(6.37e-05)]_15 chr2L:8485651-8485771 3.07e-01 120 chr2R:14984360-14984480 1.35e-02 32_[+4(4.90e-05)]_80 chr2R:21181186-21181306 1.22e-02 103_[+5(8.24e-06)]_9 chr2R:8158381-8158501 5.76e-04 80_[+1(1.42e-05)]_32 chr2R:21843201-21843321 1.14e-01 120 chr3R:17631048-17631168 5.22e-04 41_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 61 chr3L:8028592-8028712 7.88e-04 1_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 101 chr2R:12336333-12336453 7.26e-01 120 chr2L:14599531-14599651 8.61e-01 120 chr3R:17617942-17618062 9.50e-01 120 chr3R:18108765-18108885 9.62e-01 120 chr2R:17616554-17616674 3.22e-01 120 chr2R:18639752-18639872 3.36e-01 120 chr3L:18896609-18896729 6.09e-01 120 chr3R:8668156-8668276 4.69e-04 27_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 75 chr3L:1380059-1380179 8.37e-01 120 chr3R:6819328-6819448 3.62e-01 120 chr3R:8642754-8642874 7.61e-06 14_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 88 chr3R:17646255-17646375 5.94e-01 120 chr2L:5240878-5240998 1.00e+00 120 chr3R:17646738-17646858 2.39e-02 2_[+2(1.42e-05)]_110 chr3L:1488661-1488781 1.33e-01 120 chr3R:18628547-18628667 5.95e-01 120 chr3R:22397420-22397540 6.88e-02 100_[+3(7.98e-05)]_12 chr3R:16321341-16321461 8.64e-04 68_[+1(1.42e-05)]_2_[+3(4.11e-05)]_\ 34 chr2R:19728090-19728210 1.00e+00 120 chrX:5613193-5613313 3.42e-01 120 chr2R:6171556-6171676 2.68e-01 120 chr2R:11405476-11405596 7.76e-01 120 chr3L:769421-769541 3.48e-04 14_[+3(4.11e-05)]_17_[+3(3.31e-05)]_\ 40_[+5(8.24e-06)]_25 chr3L:11801558-11801678 9.26e-01 120 chr3L:8060266-8060386 6.09e-01 120 chr2R:16219489-16219609 8.29e-01 120 chr3R:23601445-23601565 2.61e-01 120 chr3R:7131026-7131146 5.76e-01 120 chr2R:6153544-6153664 8.13e-02 39_[+4(3.43e-05)]_73 chr3L:8060718-8060838 4.61e-01 120 chr2R:17392121-17392241 3.10e-04 100_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 3 chr2R:13430856-13430976 7.48e-01 120 chr2R:12336533-12336653 9.98e-01 120 chr3L:22847771-22847891 1.72e-01 120 chr2R:13437781-13437901 6.64e-04 91_[+1(1.42e-05)]_21 chr3L:14674165-14674285 3.00e-01 120 chr2R:19414518-19414638 2.00e-03 120 chr2R:21848456-21848576 7.28e-01 120 chr3L:16221923-16222043 2.04e-01 120 chr3R:17617623-17617743 9.94e-01 120 chrX:5524636-5524756 3.60e-01 120 chr3L:3096282-3096402 1.24e-03 93_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 10 chr2R:25076638-25076758 1.83e-01 120 chr2L:8570781-8570901 2.37e-01 120 chr3L:8066042-8066162 1.91e-01 120 chr2R:6152849-6152969 9.32e-01 120 chr2R:13431065-13431185 9.62e-01 120 chr2R:19725805-19725925 1.00e-02 105_[+5(8.24e-06)]_7 chr3R:12206492-12206612 1.41e-03 89_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 14 chr3L:8060485-8060605 3.36e-01 120 chrX:3827507-3827627 9.52e-03 14_[+5(8.24e-06)]_98 chr3L:18618244-18618364 2.73e-03 78_[+3(1.87e-05)]_34 chr3R:17620097-17620217 5.22e-04 94_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 8 chr2R:17604621-17604741 7.21e-01 120 chr3R:16321599-16321719 2.42e-01 96_[+5(6.37e-05)]_16 chr3L:1380410-1380530 1.00e+00 120 chrX:5832179-5832299 1.15e-01 13_[+4(3.43e-05)]_99 chr2R:11652453-11652573 4.42e-01 120 chr3R:23730394-23730514 6.63e-01 120 chr2R:13430244-13430364 4.78e-04 85_[+4(6.33e-05)]_3_[+2(1.42e-05)]_\ 16 chr3L:11772906-11773026 4.37e-01 120 chr2L:8541610-8541730 4.44e-01 120 chr2R:7070811-7070931 3.26e-01 120 chr2L:3173085-3173205 9.50e-01 120 chr3R:12322599-12322719 2.58e-04 11_[+4(1.96e-05)]_1_[+2(1.42e-05)]_\ 92 chr3R:17619848-17619968 3.82e-01 120 chr2L:2460018-2460138 6.42e-05 1_[+4(1.10e-05)]_2_[+2(1.42e-05)]_\ 101 chrX:21231374-21231494 2.38e-01 120 chr3R:6908215-6908335 4.44e-01 120 chr2L:8478087-8478207 8.47e-01 120 chr2R:22686939-22687059 7.96e-01 120 chr3R:26947545-26947665 6.94e-01 120 chr2R:9541710-9541830 8.91e-03 67_[+5(6.37e-05)]_45 chr2L:8290643-8290763 4.44e-04 6_[+3(1.87e-05)]_76_[+1(1.42e-05)]_\ 2_[+3(1.87e-05)]_12 chr2R:23072443-23072563 4.91e-01 120 chrX:14016920-14017040 5.07e-02 95_[+5(3.83e-05)]_17 chrX:14017133-14017253 5.22e-02 84_[+5(3.83e-05)]_28 chr3R:24263731-24263851 1.97e-01 120 chr3R:17615698-17615818 6.59e-01 120 chr2L:13383226-13383346 6.30e-01 120 chr3L:2273651-2273771 3.02e-04 99_[+1(1.42e-05)]_1_[+3(1.87e-05)]_\ 4 chr3L:11773870-11773990 9.88e-01 120 chr3R:20604826-20604946 8.82e-01 120 chr3R:19790234-19790354 9.16e-01 120 chr2R:20657843-20657963 2.04e-03 53_[+5(8.24e-06)]_2_[+3(5.56e-05)]_\ 49 chr3R:17647551-17647671 1.71e-01 61_[+3(5.56e-05)]_51 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************