******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9139.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:16590477-16590597 1.0000 120 chr3L:10534025-10534145 1.0000 120 chr2L:20812629-20812749 1.0000 120 chr3R:18146806-18146926 1.0000 120 chr2R:15284729-15284849 1.0000 120 chr3R:8922705-8922825 1.0000 120 chr3R:9381099-9381219 1.0000 120 chr3L:2426545-2426665 1.0000 120 chrX:7980937-7981057 1.0000 120 chr3L:22421001-22421121 1.0000 120 chr2R:13023736-13023856 1.0000 120 chrX:11785157-11785277 1.0000 120 chr3L:10814070-10814190 1.0000 120 chrX:19485201-19485321 1.0000 120 chr3R:29726012-29726132 1.0000 120 chr2R:15032863-15032983 1.0000 120 chrX:13116515-13116635 1.0000 120 chr3R:16334461-16334581 1.0000 120 chrX:7973426-7973546 1.0000 120 chr3R:16287319-16287439 1.0000 120 chr3R:11208905-11209025 1.0000 120 chr2R:18432720-18432840 1.0000 120 chr3R:26004492-26004612 1.0000 120 chrX:17726115-17726235 1.0000 120 chrX:17806476-17806596 1.0000 120 chr3R:10592940-10593060 1.0000 120 chr2L:7207813-7207933 1.0000 120 chr3R:18294662-18294782 1.0000 120 chrX:15608863-15608983 1.0000 120 chr2R:16154056-16154176 1.0000 120 chr3L:8460593-8460713 1.0000 120 chr3R:17019289-17019409 1.0000 120 chr3L:11136459-11136579 1.0000 120 chrX:15080051-15080171 1.0000 120 chr3R:21824542-21824662 1.0000 120 chr3R:11859271-11859391 1.0000 120 chrX:5768985-5769105 1.0000 120 chr3L:18057895-18058015 1.0000 120 chr2R:17266140-17266260 1.0000 120 chrX:5300743-5300863 1.0000 120 chr2R:15664676-15664796 1.0000 120 chrX:13644778-13644898 1.0000 120 chr2R:24760537-24760657 1.0000 120 chr3L:9462907-9463027 1.0000 120 chr2R:7370396-7370516 1.0000 120 chr3R:24004092-24004212 1.0000 120 chr3R:10589362-10589482 1.0000 120 chrX:9344240-9344360 1.0000 120 chrX:13209564-13209684 1.0000 120 chr3R:13524838-13524958 1.0000 120 chr3L:12014397-12014517 1.0000 120 chr3L:18889382-18889502 1.0000 120 chrX:8159119-8159239 1.0000 120 chr2L:2802614-2802734 1.0000 120 chr2R:22596892-22597012 1.0000 120 chr2L:2823061-2823181 1.0000 120 chrX:13879552-13879672 1.0000 120 chr2L:13122701-13122821 1.0000 120 chrX:18866422-18866542 1.0000 120 chr2L:10009580-10009700 1.0000 120 chr3R:10539686-10539806 1.0000 120 chr3L:17631402-17631522 1.0000 120 chr3R:23319042-23319162 1.0000 120 chr3R:19317473-19317593 1.0000 120 chr3R:30014053-30014173 1.0000 120 chr3R:12717063-12717183 1.0000 120 chrX:10932408-10932528 1.0000 120 chr2L:19144248-19144368 1.0000 120 chr3L:10726133-10726253 1.0000 120 chr2L:21030381-21030501 1.0000 120 chr2R:18567359-18567479 1.0000 120 chr2R:17439594-17439714 1.0000 120 chrX:6003971-6004091 1.0000 120 chrX:9252344-9252464 1.0000 120 chrX:3151276-3151396 1.0000 120 chr3R:11243650-11243770 1.0000 120 chrX:16906218-16906338 1.0000 120 chr3R:30285110-30285230 1.0000 120 chr3R:30289457-30289577 1.0000 120 chr2R:8180493-8180613 1.0000 120 chr3R:25596778-25596898 1.0000 120 chr2R:19617333-19617453 1.0000 120 chr3L:5943641-5943761 1.0000 120 chr3R:25529439-25529559 1.0000 120 chr2R:22546073-22546193 1.0000 120 chr2R:12457562-12457682 1.0000 120 chr3R:30005448-30005568 1.0000 120 chr2L:10794155-10794275 1.0000 120 chr3L:2873227-2873347 1.0000 120 chrX:3158752-3158872 1.0000 120 chr3R:10115120-10115240 1.0000 120 chr2R:22099380-22099500 1.0000 120 chr2R:20580830-20580950 1.0000 120 chrX:17488538-17488658 1.0000 120 chrX:6592829-6592949 1.0000 120 chr2R:18314754-18314874 1.0000 120 chr3R:7283637-7283757 1.0000 120 chrX:4564137-4564257 1.0000 120 chr2R:16077944-16078064 1.0000 120 chr3L:8775517-8775637 1.0000 120 chr2L:8002326-8002446 1.0000 120 chr2R:20665251-20665371 1.0000 120 chr3R:21938664-21938784 1.0000 120 chr3L:18080123-18080243 1.0000 120 chr3L:6447852-6447972 1.0000 120 chr3R:13309679-13309799 1.0000 120 chrX:18544890-18545010 1.0000 120 chr3R:20556848-20556968 1.0000 120 chr3R:16206298-16206418 1.0000 120 chr2L:7189777-7189897 1.0000 120 chr3L:11442382-11442502 1.0000 120 chr2R:9714276-9714396 1.0000 120 chr2L:9945230-9945350 1.0000 120 chr2R:21065131-21065251 1.0000 120 chr3R:5622188-5622308 1.0000 120 chr2L:2806328-2806448 1.0000 120 chr2R:15881657-15881777 1.0000 120 chr2L:1617871-1617991 1.0000 120 chr3L:14059704-14059824 1.0000 120 chr2R:24584596-24584716 1.0000 120 chr3L:14481531-14481651 1.0000 120 chr2R:18291315-18291435 1.0000 120 chr2L:8007341-8007461 1.0000 120 chr3R:20280549-20280669 1.0000 120 chr3R:28914232-28914352 1.0000 120 chr3L:19055276-19055396 1.0000 120 chr3R:27925825-27925945 1.0000 120 chr2R:6148137-6148257 1.0000 120 chr2R:15906087-15906207 1.0000 120 chrX:19359257-19359377 1.0000 120 chrX:5988223-5988343 1.0000 120 chrX:9139255-9139375 1.0000 120 chrX:13406390-13406510 1.0000 120 chrX:18699456-18699576 1.0000 120 chr3R:21634825-21634945 1.0000 120 chr2R:6159889-6160009 1.0000 120 chr3L:10942548-10942668 1.0000 120 chr2L:135868-135988 1.0000 120 chrX:18839344-18839464 1.0000 120 chrX:4200738-4200858 1.0000 120 chr3L:8028106-8028226 1.0000 120 chrX:19165424-19165544 1.0000 120 chr2L:22756413-22756533 1.0000 120 chrX:13114966-13115086 1.0000 120 chr2R:8655409-8655529 1.0000 120 chr3L:20387970-20388090 1.0000 120 chr3R:13716211-13716331 1.0000 120 chr3L:17905860-17905980 1.0000 120 chr3L:12615166-12615286 1.0000 120 chr2L:18458722-18458842 1.0000 120 chr3L:83134-83254 1.0000 120 chrX:7222233-7222353 1.0000 120 chr3L:2490821-2490941 1.0000 120 chr3L:9551310-9551430 1.0000 120 chr2R:22399486-22399606 1.0000 120 chr2L:168457-168577 1.0000 120 chr3L:12096954-12097074 1.0000 120 chrX:12675418-12675538 1.0000 120 chr3R:14765757-14765877 1.0000 120 chr2R:6166945-6167065 1.0000 120 chr3R:25493947-25494067 1.0000 120 chrX:13948935-13949055 1.0000 120 chrX:8592766-8592886 1.0000 120 chr2R:7109469-7109589 1.0000 120 chr2R:19157691-19157811 1.0000 120 chr2L:14997554-14997674 1.0000 120 chr3R:21948745-21948865 1.0000 120 chrX:5051233-5051353 1.0000 120 chr2R:18879264-18879384 1.0000 120 chr3L:14450660-14450780 1.0000 120 chr3R:11449763-11449883 1.0000 120 chrX:4462086-4462206 1.0000 120 chr3L:19021847-19021967 1.0000 120 chr2R:11189260-11189380 1.0000 120 chr2L:3095549-3095669 1.0000 120 chrX:20166817-20166937 1.0000 120 chr2R:21386725-21386845 1.0000 120 chr2L:7466418-7466538 1.0000 120 chr2L:7084566-7084686 1.0000 120 chr2L:524561-524681 1.0000 120 chr2L:7880568-7880688 1.0000 120 chr3R:4236684-4236804 1.0000 120 chr3L:21013594-21013714 1.0000 120 chr3R:30357169-30357289 1.0000 120 chr3R:9389153-9389273 1.0000 120 chrX:8518125-8518245 1.0000 120 chr3L:16803415-16803535 1.0000 120 chr3R:26543515-26543635 1.0000 120 chrX:16723721-16723841 1.0000 120 chr2R:11180827-11180947 1.0000 120 chr3L:736858-736978 1.0000 120 chr2L:7437468-7437588 1.0000 120 chr2L:3719765-3719885 1.0000 120 chr2L:8420450-8420570 1.0000 120 chr3R:21653585-21653705 1.0000 120 chr3L:6155246-6155366 1.0000 120 chr3R:11977102-11977222 1.0000 120 chr3L:11368495-11368615 1.0000 120 chr3R:22539888-22540008 1.0000 120 chrX:6708205-6708325 1.0000 120 chr2L:12527741-12527861 1.0000 120 chr2L:5236600-5236720 1.0000 120 chr3R:11865245-11865365 1.0000 120 chr2R:21543350-21543470 1.0000 120 chr2L:20916938-20917058 1.0000 120 chrX:6803982-6804102 1.0000 120 chr3R:12406799-12406919 1.0000 120 chrX:4435051-4435171 1.0000 120 chrX:10021907-10022027 1.0000 120 chr4:829967-830087 1.0000 120 chrX:6632032-6632152 1.0000 120 chr3R:4914540-4914660 1.0000 120 chr3L:8360369-8360489 1.0000 120 chr2R:18308040-18308160 1.0000 120 chr2L:7334250-7334370 1.0000 120 chr2L:20881876-20881996 1.0000 120 chr2L:13550834-13550954 1.0000 120 chr2R:11912778-11912898 1.0000 120 chr3L:4178303-4178423 1.0000 120 chrX:17732238-17732358 1.0000 120 chr2R:10057974-10058094 1.0000 120 chr2R:22586982-22587102 1.0000 120 chr3L:5141478-5141598 1.0000 120 chr2R:14987134-14987254 1.0000 120 chr3L:4336781-4336901 1.0000 120 chr2R:23014940-23015060 1.0000 120 chrX:4671327-4671447 1.0000 120 chr3L:5551154-5551274 1.0000 120 chr3R:23878139-23878259 1.0000 120 chr2L:131493-131613 1.0000 120 chr3R:25518103-25518223 1.0000 120 chr3L:11557304-11557424 1.0000 120 chrX:6730791-6730911 1.0000 120 chr3L:18038482-18038602 1.0000 120 chr3R:8349990-8350110 1.0000 120 chr2L:13665440-13665560 1.0000 120 chr3L:7263875-7263995 1.0000 120 chr3R:4469022-4469142 1.0000 120 chr2R:23432173-23432293 1.0000 120 chr3L:18783580-18783700 1.0000 120 chr3L:9367603-9367723 1.0000 120 chr3L:10757067-10757187 1.0000 120 chr2R:14027220-14027340 1.0000 120 chr2R:23637951-23638071 1.0000 120 chr3L:11442583-11442703 1.0000 120 chr2R:21389280-21389400 1.0000 120 chr3L:69452-69572 1.0000 120 chr3R:13647098-13647218 1.0000 120 chrX:18483630-18483750 1.0000 120 chrX:8231772-8231892 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG9139/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9139.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.211 G 0.216 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.211 G 0.216 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 97 llr = 792 E-value = 1.7e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C 1:1::::: probability G :::21::: matrix T 9a979aaa bits 2.2 2.0 1.8 * * 1.6 ** *** Relative 1.3 *** **** Entropy 1.1 *** **** (11.8 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8231772-8231892 36 4.23e-05 ACTGTTTTAC TTTTTTTT CACTTATTTG chr2R:14027220-14027340 31 4.23e-05 CAACGTACTT TTTTTTTT GCTGCGCTTC chr2L:13665440-13665560 9 4.23e-05 CAAGTGAG TTTTTTTT CTTGCTTTCT chr3L:18038482-18038602 101 4.23e-05 TGCACTTTTG TTTTTTTT CTTTTTTTGG chrX:6730791-6730911 45 4.23e-05 TGCCTTGCTA TTTTTTTT AGTTTTTGTT chrX:6632032-6632152 54 4.23e-05 tttggtttgc tttttttt ttttgtgtgt chr4:829967-830087 96 4.23e-05 tttttttttt tttttttt GATGCGAAGC chrX:10021907-10022027 59 4.23e-05 TTTTCATGTT TTTTTTTT CACGAGTTTC chr2R:21543350-21543470 90 4.23e-05 tgtgtttttt tttttttt GAAACGTGAG chr3R:11865245-11865365 70 4.23e-05 GTTTACACTT TTTTTTTT GCGCAGACAC chr3L:6155246-6155366 52 4.23e-05 GTTTCGtttt tttttttt aattgttttt chrX:8518125-8518245 11 4.23e-05 AAGCTCTGTG tttttttt atttttccta chr3R:14765757-14765877 104 4.23e-05 GTTTGACAAG TTTTTTTT TTTGCAGTC chr3L:9551310-9551430 69 4.23e-05 TTGTTGTATT TTTTTTTT TGTAGTTGCT chr3L:12615166-12615286 64 4.23e-05 ttcttttttt tttttttt ttggttttat chrX:13114966-13115086 32 4.23e-05 TGGTTTTAAT TTTTTTTT GTTATTTTCA chrX:19165424-19165544 53 4.23e-05 CTGTTGCTTC TTTTTTTT GCAGACTTTG chr3L:8028106-8028226 90 4.23e-05 CTCAACCGTT TTTTTTTT CTCCGTTCAa chr2R:6159889-6160009 112 4.23e-05 TCTGCCAAGC TTTTTTTT A chr3R:21634825-21634945 96 4.23e-05 CTATGCTTGA TTTTTTTT CAACCATTTT chr3L:6447852-6447972 56 4.23e-05 CTTGTTTTGT TTTTTTTT CGCCGCAAAA chr3L:18080123-18080243 113 4.23e-05 TTTCGCTTTT TTTTTTTT chr3R:21938664-21938784 94 4.23e-05 TTTTAATTCT TTTTTTTT CGAACTTTTT chr3L:8775517-8775637 86 4.23e-05 TTTGTTGTTC TTTTTTTT CTCAATTCAT chr2R:20580830-20580950 110 4.23e-05 aatatcttat tttttttt gtt chrX:3158752-3158872 80 4.23e-05 attgtttttt tttttttt tttgttttGT chr3R:30005448-30005568 88 4.23e-05 ctttttcatt tttttttt CGTTGCATTT chr2R:22546073-22546193 64 4.23e-05 GTTTGCTGtt tttttttt cgattttttt chr3L:5943641-5943761 100 4.23e-05 tttcttcatt tttttttt cttttttttt chr3R:30289457-30289577 88 4.23e-05 TTGTCTCGTT TTTTTTTT ACTTGCACTT chrX:16906218-16906338 3 4.23e-05 tt tttttttt ttttttgttt chrX:3151276-3151396 102 4.23e-05 tttttttttt tttttttt GTATATGTAT chr2L:21030381-21030501 105 4.23e-05 TGTTTGTATC TTTTTTTT TAGTCCGG chrX:18866422-18866542 104 4.23e-05 GTATTGTTTT TTTTTTTT GTTTCGGGC chr3R:10589362-10589482 24 4.23e-05 TATGCTTTAT TTTTTTTT CAGTTCGATT chr3R:24004092-24004212 53 4.23e-05 ttttttaggt tttttttt tGTGCTACGG chrX:5768985-5769105 17 4.23e-05 tttcgtttcg tttttttt cttgtagttt chr3L:11136459-11136579 105 4.23e-05 tctttcgttt tttttttt gtgttAGA chr3R:10592940-10593060 52 4.23e-05 TTTTGCATCT TTTTTTTT TGCATTTTTA chrX:7973426-7973546 45 4.23e-05 TGTTTATTGG TTTTTTTT TTACTTTTTG chrX:7980937-7981057 76 4.23e-05 aatagttttc tttttttt ttcctttttt chr3R:9381099-9381219 56 4.23e-05 TTAGTTTATT TTTTTTTT GTATATTTGT chr3R:18146806-18146926 34 4.23e-05 ctttttccca tttttttt tcttCGCCCA chr2L:20812629-20812749 91 4.23e-05 tatttattta tttttttT GTAATAACAA chr3L:10534025-10534145 105 4.23e-05 TTTTTCTTCT TTTTTTTT TGTATATT chr2R:23432173-23432293 41 7.45e-05 CGTCTCACGT TTTGTTTT CTTCTTATTA chr2R:10057974-10058094 8 7.45e-05 CTTGATT TTTGTTTT TGTTTCATCT chrX:16723721-16723841 113 7.45e-05 tgttttggta tttgtttt chr2L:7466418-7466538 75 7.45e-05 CTCGTTTTGG TTTGTTTT GGCTTTTTGG chr2L:168457-168577 40 7.45e-05 TTGTTCGCTC TTTGTTTT GCAAATTCTG chr3R:13716211-13716331 53 7.45e-05 tttccctcgc tttgtttt ctttcgtttc chrX:13406390-13406510 29 7.45e-05 GCCTGCCttt tttgtttt tgttttttct chr3L:14481531-14481651 59 7.45e-05 TTTTTTTATT TTTGTTTT TTAGCCCACG chr3L:10726133-10726253 8 7.45e-05 TTTTTGC TTTGTTTT TCCACTCTTT chr2L:10009580-10009700 42 7.45e-05 GCCGAAAGTG TTTGTTTT TTGTTTTGAT chrX:13879552-13879672 91 7.45e-05 GATttttgtt tttgtttt gcttttgctt chr2L:2823061-2823181 81 7.45e-05 GCTGCTGTTA TTTGTTTT CCTTTTTTTC chr3R:17019289-17019409 32 7.45e-05 GGCTTGTGGT TTTGTTTT TCGATTTTAG chrX:17726115-17726235 13 7.45e-05 GTGCTTCTTt tttgtttt gtttcgacta chrX:19485201-19485321 9 7.45e-05 TCGGCGCT TTTGTTTT GGTTTTGgtt chr2L:20916938-20917058 79 1.06e-04 gctgcacttg ttcttttt cttatcctcc chrX:6708205-6708325 88 1.06e-04 TCTCTTCTTT TTCTTTTT TGGGATATGA chr3R:21948745-21948865 26 1.06e-04 GGCCACCATT TTCTTTTT CTTCGCTTTT chr3R:28914232-28914352 42 1.06e-04 TTTCGCTTTG TTCTTTTT ATTTCTTTCC chr2L:19144248-19144368 107 1.06e-04 CCTCACCACC ttcttttt atattt chr3R:30014053-30014173 26 1.06e-04 GACCTTTCTC TTCTTTTT GCCCGGGGTA chrX:13116515-13116635 54 1.06e-04 AACCTGTTGC TTCTTTTT ATTTTTGTTG chr3L:22421001-22421121 4 1.06e-04 ttt ttcttttt tGTCTGTCTC chr2R:22586982-22587102 29 1.49e-04 TTTATATTTT TTTATTTT TCGCATGGGC chrX:18839344-18839464 75 1.49e-04 TCTGGGATTC TTTATTTT TATTGGGATT chrX:18699456-18699576 55 1.49e-04 TATACGTATT TTTATTTT TTAAACAAGC chr3R:20280549-20280669 108 1.49e-04 Attttttatt tttatttt gttta chr3L:2873227-2873347 66 1.49e-04 TATCTTTTCC TTTATTTT TATTATTTTC chr2R:7370396-7370516 30 1.49e-04 CAGGTGTGTT TTTATTTT ACCTTTTTCG chr3R:16334461-16334581 62 1.49e-04 TGTTGTTGGC TTTATTTT GCACATATTT chr3R:25518103-25518223 48 1.81e-04 TGCATCCAAG CTTTTTTT GTTGCTCCTT chr3L:8360369-8360489 58 1.81e-04 TCTCTTCACA CTTTTTTT ATCCGTATCT chr3L:83134-83254 3 1.81e-04 CT CTTTTTTT AATATTTTGC chrX:5051233-5051353 35 2.13e-04 aagaaCTTCA TTTTGTTT GGTTTTGCAG chr2R:8180493-8180613 13 2.13e-04 GTGGGCGACG TTTTGTTT GAAGTGCACT chr2L:8420450-8420570 34 2.37e-04 TTACTTTGTC TTCGTTTT TATCCTTTTT chr2R:15284729-15284849 59 2.37e-04 CCCAACTCCC TTCGTTTT CGCCCCCATC chrX:12675418-12675538 54 2.68e-04 TGTTTATGTA TTTTTTTC CTTTTAGTTT chr3R:7283637-7283757 30 2.68e-04 TTGCTGTGCA TTTTTTTC TCTTGGCGCC chr2R:17266140-17266260 112 2.68e-04 GATCGTTGTG TTTTTTTC C chrX:8592766-8592886 3 2.92e-04 AA CTTGTTTT CCCCAGCTCC chr3R:26543515-26543635 63 3.35e-04 TTCGCATTCA TTTTTATT GTCGTCATGC chrX:6003971-6004091 78 3.35e-04 AATTATTCGA TTTTTATT TCTAGATTTA chr3L:20387970-20388090 89 3.60e-04 CGGGGAAGCC TTTGGTTT ATTACAATAT chr3L:14059704-14059824 22 4.03e-04 ttatgcactc ttttattt acttatttat chr3L:8460593-8460713 113 4.03e-04 CATATATCTG ttttattt chr2L:7334250-7334370 82 4.35e-04 CGCGTTTAAT TTCATTTT TTACGCTACT chr2L:13550834-13550954 75 5.15e-04 CCAATAGCTG TTTTTGTT GTGATTTTAT chr3L:69452-69572 15 6.03e-04 GGTTCCACCA TTTGTATT TGGTGCGTCA chr3L:17905860-17905980 107 7.49e-04 TTTTATATGT CTTTGTTT AGATTT chr2L:8007341-8007461 105 7.49e-04 TATACCCCGG CTTTGTTT ACATGGCT chr2L:8002326-8002446 28 7.49e-04 GCGGAATGCA TTTATTTC TGGTTTGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8231772-8231892 4.2e-05 35_[+1]_77 chr2R:14027220-14027340 4.2e-05 30_[+1]_82 chr2L:13665440-13665560 4.2e-05 8_[+1]_104 chr3L:18038482-18038602 4.2e-05 100_[+1]_12 chrX:6730791-6730911 4.2e-05 44_[+1]_68 chrX:6632032-6632152 4.2e-05 53_[+1]_59 chr4:829967-830087 4.2e-05 95_[+1]_17 chrX:10021907-10022027 4.2e-05 58_[+1]_54 chr2R:21543350-21543470 4.2e-05 89_[+1]_23 chr3R:11865245-11865365 4.2e-05 69_[+1]_43 chr3L:6155246-6155366 4.2e-05 51_[+1]_61 chrX:8518125-8518245 4.2e-05 10_[+1]_102 chr3R:14765757-14765877 4.2e-05 103_[+1]_9 chr3L:9551310-9551430 4.2e-05 68_[+1]_44 chr3L:12615166-12615286 4.2e-05 63_[+1]_49 chrX:13114966-13115086 4.2e-05 31_[+1]_81 chrX:19165424-19165544 4.2e-05 52_[+1]_60 chr3L:8028106-8028226 4.2e-05 89_[+1]_23 chr2R:6159889-6160009 4.2e-05 111_[+1]_1 chr3R:21634825-21634945 4.2e-05 95_[+1]_17 chr3L:6447852-6447972 4.2e-05 55_[+1]_57 chr3L:18080123-18080243 4.2e-05 112_[+1] chr3R:21938664-21938784 4.2e-05 93_[+1]_19 chr3L:8775517-8775637 4.2e-05 85_[+1]_27 chr2R:20580830-20580950 4.2e-05 109_[+1]_3 chrX:3158752-3158872 4.2e-05 79_[+1]_33 chr3R:30005448-30005568 4.2e-05 87_[+1]_25 chr2R:22546073-22546193 4.2e-05 63_[+1]_49 chr3L:5943641-5943761 4.2e-05 99_[+1]_13 chr3R:30289457-30289577 4.2e-05 87_[+1]_25 chrX:16906218-16906338 4.2e-05 2_[+1]_110 chrX:3151276-3151396 4.2e-05 101_[+1]_11 chr2L:21030381-21030501 4.2e-05 104_[+1]_8 chrX:18866422-18866542 4.2e-05 103_[+1]_9 chr3R:10589362-10589482 4.2e-05 23_[+1]_89 chr3R:24004092-24004212 4.2e-05 52_[+1]_60 chrX:5768985-5769105 4.2e-05 16_[+1]_96 chr3L:11136459-11136579 4.2e-05 104_[+1]_8 chr3R:10592940-10593060 4.2e-05 51_[+1]_61 chrX:7973426-7973546 4.2e-05 44_[+1]_68 chrX:7980937-7981057 4.2e-05 75_[+1]_37 chr3R:9381099-9381219 4.2e-05 55_[+1]_57 chr3R:18146806-18146926 4.2e-05 33_[+1]_79 chr2L:20812629-20812749 4.2e-05 90_[+1]_22 chr3L:10534025-10534145 4.2e-05 104_[+1]_8 chr2R:23432173-23432293 7.5e-05 40_[+1]_72 chr2R:10057974-10058094 7.5e-05 7_[+1]_105 chrX:16723721-16723841 7.5e-05 112_[+1] chr2L:7466418-7466538 7.5e-05 74_[+1]_38 chr2L:168457-168577 7.5e-05 39_[+1]_73 chr3R:13716211-13716331 7.5e-05 52_[+1]_60 chrX:13406390-13406510 7.5e-05 28_[+1]_84 chr3L:14481531-14481651 7.5e-05 58_[+1]_54 chr3L:10726133-10726253 7.5e-05 7_[+1]_105 chr2L:10009580-10009700 7.5e-05 41_[+1]_71 chrX:13879552-13879672 7.5e-05 90_[+1]_22 chr2L:2823061-2823181 7.5e-05 80_[+1]_32 chr3R:17019289-17019409 7.5e-05 31_[+1]_81 chrX:17726115-17726235 7.5e-05 12_[+1]_100 chrX:19485201-19485321 7.5e-05 8_[+1]_104 chr2L:20916938-20917058 0.00011 78_[+1]_34 chrX:6708205-6708325 0.00011 87_[+1]_25 chr3R:21948745-21948865 0.00011 25_[+1]_87 chr3R:28914232-28914352 0.00011 41_[+1]_71 chr2L:19144248-19144368 0.00011 106_[+1]_6 chr3R:30014053-30014173 0.00011 25_[+1]_87 chrX:13116515-13116635 0.00011 53_[+1]_59 chr3L:22421001-22421121 0.00011 3_[+1]_109 chr2R:22586982-22587102 0.00015 28_[+1]_84 chrX:18839344-18839464 0.00015 74_[+1]_38 chrX:18699456-18699576 0.00015 54_[+1]_58 chr3R:20280549-20280669 0.00015 107_[+1]_5 chr3L:2873227-2873347 0.00015 65_[+1]_47 chr2R:7370396-7370516 0.00015 29_[+1]_83 chr3R:16334461-16334581 0.00015 61_[+1]_51 chr3R:25518103-25518223 0.00018 47_[+1]_65 chr3L:8360369-8360489 0.00018 57_[+1]_55 chr3L:83134-83254 0.00018 2_[+1]_110 chrX:5051233-5051353 0.00021 34_[+1]_78 chr2R:8180493-8180613 0.00021 12_[+1]_100 chr2L:8420450-8420570 0.00024 33_[+1]_79 chr2R:15284729-15284849 0.00024 58_[+1]_54 chrX:12675418-12675538 0.00027 53_[+1]_59 chr3R:7283637-7283757 0.00027 29_[+1]_83 chr2R:17266140-17266260 0.00027 111_[+1]_1 chrX:8592766-8592886 0.00029 2_[+1]_110 chr3R:26543515-26543635 0.00034 62_[+1]_50 chrX:6003971-6004091 0.00034 77_[+1]_35 chr3L:20387970-20388090 0.00036 88_[+1]_24 chr3L:14059704-14059824 0.0004 21_[+1]_91 chr3L:8460593-8460713 0.0004 112_[+1] chr2L:7334250-7334370 0.00044 81_[+1]_31 chr2L:13550834-13550954 0.00051 74_[+1]_38 chr3L:69452-69572 0.0006 14_[+1]_98 chr3L:17905860-17905980 0.00075 106_[+1]_6 chr2L:8007341-8007461 0.00075 104_[+1]_8 chr2L:8002326-8002446 0.00075 27_[+1]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=97 chrX:8231772-8231892 ( 36) TTTTTTTT 1 chr2R:14027220-14027340 ( 31) TTTTTTTT 1 chr2L:13665440-13665560 ( 9) TTTTTTTT 1 chr3L:18038482-18038602 ( 101) TTTTTTTT 1 chrX:6730791-6730911 ( 45) TTTTTTTT 1 chrX:6632032-6632152 ( 54) TTTTTTTT 1 chr4:829967-830087 ( 96) TTTTTTTT 1 chrX:10021907-10022027 ( 59) TTTTTTTT 1 chr2R:21543350-21543470 ( 90) TTTTTTTT 1 chr3R:11865245-11865365 ( 70) TTTTTTTT 1 chr3L:6155246-6155366 ( 52) TTTTTTTT 1 chrX:8518125-8518245 ( 11) TTTTTTTT 1 chr3R:14765757-14765877 ( 104) TTTTTTTT 1 chr3L:9551310-9551430 ( 69) TTTTTTTT 1 chr3L:12615166-12615286 ( 64) TTTTTTTT 1 chrX:13114966-13115086 ( 32) TTTTTTTT 1 chrX:19165424-19165544 ( 53) TTTTTTTT 1 chr3L:8028106-8028226 ( 90) TTTTTTTT 1 chr2R:6159889-6160009 ( 112) TTTTTTTT 1 chr3R:21634825-21634945 ( 96) TTTTTTTT 1 chr3L:6447852-6447972 ( 56) TTTTTTTT 1 chr3L:18080123-18080243 ( 113) TTTTTTTT 1 chr3R:21938664-21938784 ( 94) TTTTTTTT 1 chr3L:8775517-8775637 ( 86) TTTTTTTT 1 chr2R:20580830-20580950 ( 110) TTTTTTTT 1 chrX:3158752-3158872 ( 80) TTTTTTTT 1 chr3R:30005448-30005568 ( 88) TTTTTTTT 1 chr2R:22546073-22546193 ( 64) TTTTTTTT 1 chr3L:5943641-5943761 ( 100) TTTTTTTT 1 chr3R:30289457-30289577 ( 88) TTTTTTTT 1 chrX:16906218-16906338 ( 3) TTTTTTTT 1 chrX:3151276-3151396 ( 102) TTTTTTTT 1 chr2L:21030381-21030501 ( 105) TTTTTTTT 1 chrX:18866422-18866542 ( 104) TTTTTTTT 1 chr3R:10589362-10589482 ( 24) TTTTTTTT 1 chr3R:24004092-24004212 ( 53) TTTTTTTT 1 chrX:5768985-5769105 ( 17) TTTTTTTT 1 chr3L:11136459-11136579 ( 105) TTTTTTTT 1 chr3R:10592940-10593060 ( 52) TTTTTTTT 1 chrX:7973426-7973546 ( 45) TTTTTTTT 1 chrX:7980937-7981057 ( 76) TTTTTTTT 1 chr3R:9381099-9381219 ( 56) TTTTTTTT 1 chr3R:18146806-18146926 ( 34) TTTTTTTT 1 chr2L:20812629-20812749 ( 91) TTTTTTTT 1 chr3L:10534025-10534145 ( 105) TTTTTTTT 1 chr2R:23432173-23432293 ( 41) TTTGTTTT 1 chr2R:10057974-10058094 ( 8) TTTGTTTT 1 chrX:16723721-16723841 ( 113) TTTGTTTT 1 chr2L:7466418-7466538 ( 75) TTTGTTTT 1 chr2L:168457-168577 ( 40) TTTGTTTT 1 chr3R:13716211-13716331 ( 53) TTTGTTTT 1 chrX:13406390-13406510 ( 29) TTTGTTTT 1 chr3L:14481531-14481651 ( 59) TTTGTTTT 1 chr3L:10726133-10726253 ( 8) TTTGTTTT 1 chr2L:10009580-10009700 ( 42) TTTGTTTT 1 chrX:13879552-13879672 ( 91) TTTGTTTT 1 chr2L:2823061-2823181 ( 81) TTTGTTTT 1 chr3R:17019289-17019409 ( 32) TTTGTTTT 1 chrX:17726115-17726235 ( 13) TTTGTTTT 1 chrX:19485201-19485321 ( 9) TTTGTTTT 1 chr2L:20916938-20917058 ( 79) TTCTTTTT 1 chrX:6708205-6708325 ( 88) TTCTTTTT 1 chr3R:21948745-21948865 ( 26) TTCTTTTT 1 chr3R:28914232-28914352 ( 42) TTCTTTTT 1 chr2L:19144248-19144368 ( 107) TTCTTTTT 1 chr3R:30014053-30014173 ( 26) TTCTTTTT 1 chrX:13116515-13116635 ( 54) TTCTTTTT 1 chr3L:22421001-22421121 ( 4) TTCTTTTT 1 chr2R:22586982-22587102 ( 29) TTTATTTT 1 chrX:18839344-18839464 ( 75) TTTATTTT 1 chrX:18699456-18699576 ( 55) TTTATTTT 1 chr3R:20280549-20280669 ( 108) TTTATTTT 1 chr3L:2873227-2873347 ( 66) TTTATTTT 1 chr2R:7370396-7370516 ( 30) TTTATTTT 1 chr3R:16334461-16334581 ( 62) TTTATTTT 1 chr3R:25518103-25518223 ( 48) CTTTTTTT 1 chr3L:8360369-8360489 ( 58) CTTTTTTT 1 chr3L:83134-83254 ( 3) CTTTTTTT 1 chrX:5051233-5051353 ( 35) TTTTGTTT 1 chr2R:8180493-8180613 ( 13) TTTTGTTT 1 chr2L:8420450-8420570 ( 34) TTCGTTTT 1 chr2R:15284729-15284849 ( 59) TTCGTTTT 1 chrX:12675418-12675538 ( 54) TTTTTTTC 1 chr3R:7283637-7283757 ( 30) TTTTTTTC 1 chr2R:17266140-17266260 ( 112) TTTTTTTC 1 chrX:8592766-8592886 ( 3) CTTGTTTT 1 chr3R:26543515-26543635 ( 63) TTTTTATT 1 chrX:6003971-6004091 ( 78) TTTTTATT 1 chr3L:20387970-20388090 ( 89) TTTGGTTT 1 chr3L:14059704-14059824 ( 22) TTTTATTT 1 chr3L:8460593-8460713 ( 113) TTTTATTT 1 chr2L:7334250-7334370 ( 82) TTCATTTT 1 chr2L:13550834-13550954 ( 75) TTTTTGTT 1 chr3L:69452-69572 ( 15) TTTGTATT 1 chr3L:17905860-17905980 ( 107) CTTTGTTT 1 chr2L:8007341-8007461 ( 105) CTTTGTTT 1 chr2L:8002326-8002446 ( 28) TTTATTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.77533 E= 1.7e-052 -1324 -177 -1324 173 -1324 -1324 -1324 182 -1324 -89 -1324 164 -164 -1324 -7 131 -381 -1324 -207 171 -323 -1324 -439 176 -1324 -1324 -1324 182 -1324 -235 -1324 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 1.7e-052 0.000000 0.061856 0.000000 0.938144 0.000000 0.000000 0.000000 1.000000 0.000000 0.113402 0.000000 0.886598 0.092784 0.000000 0.206186 0.701031 0.020619 0.000000 0.051546 0.927835 0.030928 0.000000 0.010309 0.958763 0.000000 0.000000 0.000000 1.000000 0.000000 0.041237 0.000000 0.958763 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTT[TG]TTTT -------------------------------------------------------------------------------- Time 8.14 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 99 llr = 797 E-value = 3.2e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa9987aa pos.-specific C ::1::1:: probability G ::::12:: matrix T ::::1::: bits 2.2 2.0 1.8 ** * 1.6 ** * ** Relative 1.3 **** ** Entropy 1.1 ***** ** (11.6 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:69452-69572 104 5.00e-05 AAAAAAACGT AAAAAAAA CTGCCTGAA chr3L:11442583-11442703 8 5.00e-05 cgaatga aaaaaaaa CTGAAAACCA chr3L:9367603-9367723 33 5.00e-05 AAAAACAACG AAAAAAAA CCACCGACAC chr3R:8349990-8350110 62 5.00e-05 GCATAAAGTG AAAAAAAA AACACAAACG chr3L:5551154-5551274 76 5.00e-05 CACTCGACAC AAAAAAAA GACTAAAAAT chrX:4671327-4671447 45 5.00e-05 aaaaaaataa aaaaaaaa aCGACGAAGA chrX:17732238-17732358 92 5.00e-05 GCAAAAACGA AAAAAAAA AAACAGAAAA chr2R:18308040-18308160 41 5.00e-05 aaaaaaagaa aaaaaaaa CAGGGAGGCA chrX:4435051-4435171 57 5.00e-05 ACAAAAAATA AAAAAAAA TTCGCACAAA chr3R:26543515-26543635 7 5.00e-05 aaacaa aaaaaaaa GTATCTTTTG chr2L:3095549-3095669 55 5.00e-05 AAAAAAGGAA AAAAAAAA AACGCAAAAC chr2R:18879264-18879384 51 5.00e-05 AAAAACGCGC AAAAAAAA GTTATAAGAA chr2R:19157691-19157811 70 5.00e-05 aaaaaagaaa aaaaaaaa gaaCGGAGCT chrX:8592766-8592886 81 5.00e-05 CGCGAAGCAT AAAAAAAA AGTCGCCAGC chr2R:8655409-8655529 33 5.00e-05 TGGAACTCaa aaaaaaaa gaaaagaaaa chrX:4200738-4200858 85 5.00e-05 AAGGTAGGCa aaaaaaaa aagaaaaaaa chrX:19359257-19359377 78 5.00e-05 agaaaaataa aaaaaaaa aaCTGAGGGG chr2R:15906087-15906207 71 5.00e-05 caaaaaagaa aaaaaaaa aaggaaaatc chr2R:18291315-18291435 53 5.00e-05 CCCACGAACG aaaaaaaa aagttaaaga chr3L:14481531-14481651 112 5.00e-05 atacacaaaa aaaaaaaa a chr2R:24584596-24584716 4 5.00e-05 AAG AAAAAAAA ACCATAAAAA chr2R:15881657-15881777 41 5.00e-05 AAAATAAAAG AAAAAAAA AAAGCTTAAA chr2L:8002326-8002446 72 5.00e-05 CCAAAGTGCG AAAAAAAA GAAAACGCTG chrX:4564137-4564257 27 5.00e-05 aaaaaaaacg aaaaaaaa acggaaaaaa chrX:17488538-17488658 6 5.00e-05 aagcg aaaaaaaa taaatgaaca chr2L:10794155-10794275 53 5.00e-05 caaaaaacaa aaaaaaaa gcaagacaag chr3R:25529439-25529559 42 5.00e-05 GAAGAAACAA AAAAAAAA ATGATAAAAA chr2R:19617333-19617453 61 5.00e-05 GTTTaaaaaa aaaaaaaa aaaCTTCAGC chr3R:25596778-25596898 55 5.00e-05 aaagaaccaa aaaaaaaa aaaagagtac chr2L:21030381-21030501 31 5.00e-05 AAAAAACCGC AAAAAAAA GTTTTTTCTC chrX:10932408-10932528 9 5.00e-05 GCTATAAA AAAAAAAA AATAAAAAAT chr3R:23319042-23319162 82 5.00e-05 GTGAAAAAAT AAAAAAAA AATGGGGGGG chr2L:10009580-10009700 70 5.00e-05 AAAAAAGGAG AAAAAAAA CGTGTGCATG chr2L:13122701-13122821 100 5.00e-05 ATATGAAATA AAAAAAAA GAAAAAGAAT chr2L:2823061-2823181 15 5.00e-05 aaaaaaaaca aaaaaaaa aagaaTCACT chr3R:13524838-13524958 12 5.00e-05 AAATCGCAGC AAAAAAAA AACAAAAAAA chrX:9344240-9344360 50 5.00e-05 CCCAGCGAGa aaaaaaaa tatataaaaa chr2R:15664676-15664796 16 5.00e-05 Caaaaataca aaaaaaaa aatacaacaa chrX:5300743-5300863 48 5.00e-05 ATAAGCCTTA AAAAAAAA GGATGATATT chr2R:17266140-17266260 90 5.00e-05 ACTTAAAAAC AAAAAAAA AAGAGATCGT chr2R:16154056-16154176 82 5.00e-05 caaaaaacag aaaaaaaa actaaacaga chrX:15608863-15608983 42 5.00e-05 atatacgaaa aaaaaaaa atcaaggaaa chrX:17806476-17806596 57 5.00e-05 aaaatcgcaa aaaaaaaa tatataaaga chr3R:26004492-26004612 63 5.00e-05 AGCCTGAACA AAAAAAAA CTAAAAAAGA chr2R:15032863-15032983 51 5.00e-05 CACACGCAGG AAAAAAAA AGGAGCGAAA chr3R:29726012-29726132 67 5.00e-05 ACAACGaaaa aaaaaaaa aaatagaaaa chr3L:10814070-10814190 70 5.00e-05 aaaaagtata aaaaaaaa gcaagagaga chrX:11785157-11785277 23 5.00e-05 aaaatagtaa aaaaaaaa aaaaaatgaa chr3R:8922705-8922825 10 5.00e-05 aataaagga aaaaaaaa acaagaaaca chr3L:18783580-18783700 85 8.73e-05 cTTTTTGCGC aaaaagaa aaatatacaa chr2R:14987134-14987254 60 8.73e-05 CAAAAAAGGA AAAAAGAA ACCCAAAAGC chr2R:22586982-22587102 72 8.73e-05 CAACAAAATA AAAAAGAA ATAAACAGCG chr2R:10057974-10058094 61 8.73e-05 TTCCTGCAGA AAAAAGAA AAAGAGCGCG chr3L:11368495-11368615 71 8.73e-05 tacgaaccaa aaaaagaa aaaaaCGCCA chr2L:8420450-8420570 66 8.73e-05 CTGAGCCATg aaaaagaa gaagcagaag chr2R:11180827-11180947 29 8.73e-05 aagccagcag aaaaagaa aaaaataaaa chr3L:19021847-19021967 56 8.73e-05 TTTAAAAAAT AAAAAGAA AAAACGTCCA chrX:5051233-5051353 22 8.73e-05 tgcggagcag aaaaagaa CTTCATTTTG chr3L:2490821-2490941 6 8.73e-05 GACAC AAAAAGAA AAACGCGAAC chrX:18544890-18545010 104 8.73e-05 CGGGCGAGGa aaaaagaa caaaaaaac chr3R:30285110-30285230 45 8.73e-05 AAAAAATTGC AAAAAGAA GAGTGGAAAC chr3R:11859271-11859391 43 8.73e-05 CGGCaaacaa aaaaagaa acagaaactg chr2L:16590477-16590597 63 8.73e-05 CAATGAAGGT AAAAAGAA TGAAGACTGA chr3L:8360369-8360489 109 1.24e-04 GTGCAAAGAA AAAAACAA AACA chr3L:6447852-6447972 78 1.24e-04 GCAAAAAGCG AAAAACAA GAATGATTAT chrX:13209564-13209684 44 1.24e-04 ATGAAAAAAT AAAAACAA AAGGTGCAGA chr3R:13647098-13647218 74 1.60e-04 ATCAGAAAGC AACAAAAA ATACACGTCA chrX:13948935-13949055 23 1.60e-04 AGAAGTCGAG AACAAAAA GAGGCGCGAG chr3R:20556848-20556968 91 1.60e-04 GGAGGAAAAT AACAAAAA CCAAATGGGG chr2R:7370396-7370516 70 1.60e-04 AAGCTCTGCG AACAAAAA CACGCAGAAC chr3R:21824542-21824662 49 1.60e-04 AAAATCGGAA AACAAAAA TACTCGACTC chrX:13879552-13879672 48 1.97e-04 AGCAAAAAGT AAAAGAAA GCAAAAGTTG chr3R:18294662-18294782 90 1.97e-04 AAAGCAGAAC AAAAGAAA GTGACAAACA chr2L:7334250-7334370 2 2.46e-04 C AAAATAAA AAGTGCGGAC chr3R:9389153-9389273 46 2.46e-04 TCCAATGAAG AAAATAAA AACCAATGAC chr3R:28914232-28914352 15 2.46e-04 GGGCATGTTT AAAATAAA ACGTAAATGT chr3L:11442382-11442502 58 2.46e-04 AGGCGTTAAA AAAATAAA AAatatatat chr2R:18314754-18314874 5 2.46e-04 GTAA AAAATAAA GAAGAGGAAG chrX:15080051-15080171 22 2.73e-04 GACTAGAAGG AACAAGAA TGCCGGGCAC chr3R:11449763-11449883 80 3.01e-04 TCGAAAGAAT AAAAGGAA ACATACATAT chr3L:9462907-9463027 2 3.01e-04 G AAAAGGAA GTGAAAATAG chr3L:2426545-2426665 69 3.01e-04 GAGCACGGGC AAAAGGAA AACAACTTGC chr2L:5236600-5236720 55 3.38e-04 AACGAAAGCA AAACAAAA GCACCAGGAG chr3L:21013594-21013714 54 3.38e-04 TCGCAACTCA AAACAAAA GCACGAAAAA chr2L:19144248-19144368 19 3.38e-04 AACGAGTTTG AAACAAAA GAACAGAAAC chr2R:6166945-6167065 109 3.74e-04 AGTTGCAATG AAAATGAA ATTG chr2L:168457-168577 72 3.74e-04 CACCGAGAGG AAAATGAA GCTAAACTTG chr2R:14027220-14027340 89 4.01e-04 GCTCGACGGc aacaacaa caacagcagc chrX:6730791-6730911 98 4.01e-04 CGGAGACAAC AACAACAA AACGAGTTGG chrX:16723721-16723841 74 4.01e-04 gagcaataag aacaacaa caacaacaaG chr2R:6159889-6160009 11 4.01e-04 CGATGAGGAC AACAACAA TACTACTATG chr2L:7880568-7880688 8 4.28e-04 GGCAATG AAAAGCAA AAGTATATTT chr2R:16077944-16078064 21 4.28e-04 TGTGTGCAAT AAAAGCAA TTTACCTAAA chrX:13644778-13644898 74 4.28e-04 ATAAAAGTAT AAAAGCAA CATTTTTACA chrX:18483630-18483750 4 4.64e-04 aag aaaaaaaC ACCGCAAAAA chr3L:4178303-4178423 101 4.64e-04 AGTGAAATGG AAAAAAAC CGGGACAGGG chrX:6592829-6592949 42 5.18e-04 TGTAAATTAT AAACAGAA GCGACATTGA chr3R:17019289-17019409 84 5.18e-04 AAAATACAAA AACAGAAA GACAAATCAC chr3L:10757067-10757187 63 7.12e-04 tatatatatt aaataaaa aactaaGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:69452-69572 5e-05 103_[+2]_9 chr3L:11442583-11442703 5e-05 7_[+2]_105 chr3L:9367603-9367723 5e-05 32_[+2]_80 chr3R:8349990-8350110 5e-05 61_[+2]_51 chr3L:5551154-5551274 5e-05 75_[+2]_37 chrX:4671327-4671447 5e-05 44_[+2]_68 chrX:17732238-17732358 5e-05 91_[+2]_21 chr2R:18308040-18308160 5e-05 40_[+2]_72 chrX:4435051-4435171 5e-05 56_[+2]_56 chr3R:26543515-26543635 5e-05 6_[+2]_106 chr2L:3095549-3095669 5e-05 54_[+2]_58 chr2R:18879264-18879384 5e-05 50_[+2]_62 chr2R:19157691-19157811 5e-05 69_[+2]_43 chrX:8592766-8592886 5e-05 80_[+2]_32 chr2R:8655409-8655529 5e-05 32_[+2]_80 chrX:4200738-4200858 5e-05 84_[+2]_28 chrX:19359257-19359377 5e-05 77_[+2]_35 chr2R:15906087-15906207 5e-05 70_[+2]_42 chr2R:18291315-18291435 5e-05 52_[+2]_60 chr3L:14481531-14481651 5e-05 111_[+2]_1 chr2R:24584596-24584716 5e-05 3_[+2]_109 chr2R:15881657-15881777 5e-05 40_[+2]_72 chr2L:8002326-8002446 5e-05 71_[+2]_41 chrX:4564137-4564257 5e-05 26_[+2]_86 chrX:17488538-17488658 5e-05 5_[+2]_107 chr2L:10794155-10794275 5e-05 52_[+2]_60 chr3R:25529439-25529559 5e-05 41_[+2]_71 chr2R:19617333-19617453 5e-05 60_[+2]_52 chr3R:25596778-25596898 5e-05 54_[+2]_58 chr2L:21030381-21030501 5e-05 30_[+2]_82 chrX:10932408-10932528 5e-05 8_[+2]_104 chr3R:23319042-23319162 5e-05 81_[+2]_31 chr2L:10009580-10009700 5e-05 69_[+2]_43 chr2L:13122701-13122821 5e-05 99_[+2]_13 chr2L:2823061-2823181 5e-05 14_[+2]_98 chr3R:13524838-13524958 5e-05 11_[+2]_101 chrX:9344240-9344360 5e-05 49_[+2]_63 chr2R:15664676-15664796 5e-05 15_[+2]_97 chrX:5300743-5300863 5e-05 47_[+2]_65 chr2R:17266140-17266260 5e-05 89_[+2]_23 chr2R:16154056-16154176 5e-05 81_[+2]_31 chrX:15608863-15608983 5e-05 41_[+2]_71 chrX:17806476-17806596 5e-05 56_[+2]_56 chr3R:26004492-26004612 5e-05 62_[+2]_50 chr2R:15032863-15032983 5e-05 50_[+2]_62 chr3R:29726012-29726132 5e-05 66_[+2]_46 chr3L:10814070-10814190 5e-05 69_[+2]_43 chrX:11785157-11785277 5e-05 22_[+2]_90 chr3R:8922705-8922825 5e-05 9_[+2]_103 chr3L:18783580-18783700 8.7e-05 84_[+2]_28 chr2R:14987134-14987254 8.7e-05 59_[+2]_53 chr2R:22586982-22587102 8.7e-05 71_[+2]_41 chr2R:10057974-10058094 8.7e-05 60_[+2]_52 chr3L:11368495-11368615 8.7e-05 70_[+2]_42 chr2L:8420450-8420570 8.7e-05 65_[+2]_47 chr2R:11180827-11180947 8.7e-05 28_[+2]_84 chr3L:19021847-19021967 8.7e-05 55_[+2]_57 chrX:5051233-5051353 8.7e-05 21_[+2]_91 chr3L:2490821-2490941 8.7e-05 5_[+2]_107 chrX:18544890-18545010 8.7e-05 103_[+2]_9 chr3R:30285110-30285230 8.7e-05 44_[+2]_68 chr3R:11859271-11859391 8.7e-05 42_[+2]_70 chr2L:16590477-16590597 8.7e-05 62_[+2]_50 chr3L:8360369-8360489 0.00012 108_[+2]_4 chr3L:6447852-6447972 0.00012 77_[+2]_35 chrX:13209564-13209684 0.00012 43_[+2]_69 chr3R:13647098-13647218 0.00016 73_[+2]_39 chrX:13948935-13949055 0.00016 22_[+2]_90 chr3R:20556848-20556968 0.00016 90_[+2]_22 chr2R:7370396-7370516 0.00016 69_[+2]_43 chr3R:21824542-21824662 0.00016 48_[+2]_64 chrX:13879552-13879672 0.0002 47_[+2]_65 chr3R:18294662-18294782 0.0002 89_[+2]_23 chr2L:7334250-7334370 0.00025 1_[+2]_111 chr3R:9389153-9389273 0.00025 45_[+2]_67 chr3R:28914232-28914352 0.00025 14_[+2]_98 chr3L:11442382-11442502 0.00025 57_[+2]_55 chr2R:18314754-18314874 0.00025 4_[+2]_108 chrX:15080051-15080171 0.00027 21_[+2]_91 chr3R:11449763-11449883 0.0003 79_[+2]_33 chr3L:9462907-9463027 0.0003 1_[+2]_111 chr3L:2426545-2426665 0.0003 68_[+2]_44 chr2L:5236600-5236720 0.00034 54_[+2]_58 chr3L:21013594-21013714 0.00034 53_[+2]_59 chr2L:19144248-19144368 0.00034 18_[+2]_94 chr2R:6166945-6167065 0.00037 108_[+2]_4 chr2L:168457-168577 0.00037 71_[+2]_41 chr2R:14027220-14027340 0.0004 88_[+2]_24 chrX:6730791-6730911 0.0004 97_[+2]_15 chrX:16723721-16723841 0.0004 73_[+2]_39 chr2R:6159889-6160009 0.0004 10_[+2]_102 chr2L:7880568-7880688 0.00043 7_[+2]_105 chr2R:16077944-16078064 0.00043 20_[+2]_92 chrX:13644778-13644898 0.00043 73_[+2]_39 chrX:18483630-18483750 0.00046 3_[+2]_109 chr3L:4178303-4178423 0.00046 100_[+2]_12 chrX:6592829-6592949 0.00052 41_[+2]_71 chr3R:17019289-17019409 0.00052 83_[+2]_29 chr3L:10757067-10757187 0.00071 62_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=99 chr3L:69452-69572 ( 104) AAAAAAAA 1 chr3L:11442583-11442703 ( 8) AAAAAAAA 1 chr3L:9367603-9367723 ( 33) AAAAAAAA 1 chr3R:8349990-8350110 ( 62) AAAAAAAA 1 chr3L:5551154-5551274 ( 76) AAAAAAAA 1 chrX:4671327-4671447 ( 45) AAAAAAAA 1 chrX:17732238-17732358 ( 92) AAAAAAAA 1 chr2R:18308040-18308160 ( 41) AAAAAAAA 1 chrX:4435051-4435171 ( 57) AAAAAAAA 1 chr3R:26543515-26543635 ( 7) AAAAAAAA 1 chr2L:3095549-3095669 ( 55) AAAAAAAA 1 chr2R:18879264-18879384 ( 51) AAAAAAAA 1 chr2R:19157691-19157811 ( 70) AAAAAAAA 1 chrX:8592766-8592886 ( 81) AAAAAAAA 1 chr2R:8655409-8655529 ( 33) AAAAAAAA 1 chrX:4200738-4200858 ( 85) AAAAAAAA 1 chrX:19359257-19359377 ( 78) AAAAAAAA 1 chr2R:15906087-15906207 ( 71) AAAAAAAA 1 chr2R:18291315-18291435 ( 53) AAAAAAAA 1 chr3L:14481531-14481651 ( 112) AAAAAAAA 1 chr2R:24584596-24584716 ( 4) AAAAAAAA 1 chr2R:15881657-15881777 ( 41) AAAAAAAA 1 chr2L:8002326-8002446 ( 72) AAAAAAAA 1 chrX:4564137-4564257 ( 27) AAAAAAAA 1 chrX:17488538-17488658 ( 6) AAAAAAAA 1 chr2L:10794155-10794275 ( 53) AAAAAAAA 1 chr3R:25529439-25529559 ( 42) AAAAAAAA 1 chr2R:19617333-19617453 ( 61) AAAAAAAA 1 chr3R:25596778-25596898 ( 55) AAAAAAAA 1 chr2L:21030381-21030501 ( 31) AAAAAAAA 1 chrX:10932408-10932528 ( 9) AAAAAAAA 1 chr3R:23319042-23319162 ( 82) AAAAAAAA 1 chr2L:10009580-10009700 ( 70) AAAAAAAA 1 chr2L:13122701-13122821 ( 100) AAAAAAAA 1 chr2L:2823061-2823181 ( 15) AAAAAAAA 1 chr3R:13524838-13524958 ( 12) AAAAAAAA 1 chrX:9344240-9344360 ( 50) AAAAAAAA 1 chr2R:15664676-15664796 ( 16) AAAAAAAA 1 chrX:5300743-5300863 ( 48) AAAAAAAA 1 chr2R:17266140-17266260 ( 90) AAAAAAAA 1 chr2R:16154056-16154176 ( 82) AAAAAAAA 1 chrX:15608863-15608983 ( 42) AAAAAAAA 1 chrX:17806476-17806596 ( 57) AAAAAAAA 1 chr3R:26004492-26004612 ( 63) AAAAAAAA 1 chr2R:15032863-15032983 ( 51) AAAAAAAA 1 chr3R:29726012-29726132 ( 67) AAAAAAAA 1 chr3L:10814070-10814190 ( 70) AAAAAAAA 1 chrX:11785157-11785277 ( 23) AAAAAAAA 1 chr3R:8922705-8922825 ( 10) AAAAAAAA 1 chr3L:18783580-18783700 ( 85) AAAAAGAA 1 chr2R:14987134-14987254 ( 60) AAAAAGAA 1 chr2R:22586982-22587102 ( 72) AAAAAGAA 1 chr2R:10057974-10058094 ( 61) AAAAAGAA 1 chr3L:11368495-11368615 ( 71) AAAAAGAA 1 chr2L:8420450-8420570 ( 66) AAAAAGAA 1 chr2R:11180827-11180947 ( 29) AAAAAGAA 1 chr3L:19021847-19021967 ( 56) AAAAAGAA 1 chrX:5051233-5051353 ( 22) AAAAAGAA 1 chr3L:2490821-2490941 ( 6) AAAAAGAA 1 chrX:18544890-18545010 ( 104) AAAAAGAA 1 chr3R:30285110-30285230 ( 45) AAAAAGAA 1 chr3R:11859271-11859391 ( 43) AAAAAGAA 1 chr2L:16590477-16590597 ( 63) AAAAAGAA 1 chr3L:8360369-8360489 ( 109) AAAAACAA 1 chr3L:6447852-6447972 ( 78) AAAAACAA 1 chrX:13209564-13209684 ( 44) AAAAACAA 1 chr3R:13647098-13647218 ( 74) AACAAAAA 1 chrX:13948935-13949055 ( 23) AACAAAAA 1 chr3R:20556848-20556968 ( 91) AACAAAAA 1 chr2R:7370396-7370516 ( 70) AACAAAAA 1 chr3R:21824542-21824662 ( 49) AACAAAAA 1 chrX:13879552-13879672 ( 48) AAAAGAAA 1 chr3R:18294662-18294782 ( 90) AAAAGAAA 1 chr2L:7334250-7334370 ( 2) AAAATAAA 1 chr3R:9389153-9389273 ( 46) AAAATAAA 1 chr3R:28914232-28914352 ( 15) AAAATAAA 1 chr3L:11442382-11442502 ( 58) AAAATAAA 1 chr2R:18314754-18314874 ( 5) AAAATAAA 1 chrX:15080051-15080171 ( 22) AACAAGAA 1 chr3R:11449763-11449883 ( 80) AAAAGGAA 1 chr3L:9462907-9463027 ( 2) AAAAGGAA 1 chr3L:2426545-2426665 ( 69) AAAAGGAA 1 chr2L:5236600-5236720 ( 55) AAACAAAA 1 chr3L:21013594-21013714 ( 54) AAACAAAA 1 chr2L:19144248-19144368 ( 19) AAACAAAA 1 chr2R:6166945-6167065 ( 109) AAAATGAA 1 chr2L:168457-168577 ( 72) AAAATGAA 1 chr2R:14027220-14027340 ( 89) AACAACAA 1 chrX:6730791-6730911 ( 98) AACAACAA 1 chrX:16723721-16723841 ( 74) AACAACAA 1 chr2R:6159889-6160009 ( 11) AACAACAA 1 chr2L:7880568-7880688 ( 8) AAAAGCAA 1 chr2R:16077944-16078064 ( 21) AAAAGCAA 1 chrX:13644778-13644898 ( 74) AAAAGCAA 1 chrX:18483630-18483750 ( 4) AAAAAAAC 1 chr3L:4178303-4178423 ( 101) AAAAAAAC 1 chrX:6592829-6592949 ( 42) AAACAGAA 1 chr3R:17019289-17019409 ( 84) AACAGAAA 1 chr3L:10757067-10757187 ( 63) AAATAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.7575 E= 3.2e-050 179 -1327 -1327 -1327 179 -1327 -1327 -1327 162 -92 -1327 -1327 171 -238 -1327 -481 153 -1327 -125 -200 125 -106 -3 -1327 179 -1327 -1327 -1327 176 -338 -1327 -1327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 3.2e-050 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.949495 0.040404 0.000000 0.010101 0.838384 0.000000 0.090909 0.070707 0.686869 0.101010 0.212121 0.000000 1.000000 0.000000 0.000000 0.000000 0.979798 0.020202 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAAA[AG]AA -------------------------------------------------------------------------------- Time 14.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTKTT MEME-3 width = 8 sites = 78 llr = 592 E-value = 1.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2:3:1:2: probability G ::1::6:: matrix T 8a6a948a bits 2.2 2.0 1.8 * * * 1.6 * * * Relative 1.3 * ** * Entropy 1.1 ** ** ** (11.0 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTGTT consensus C C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8231772-8231892 60 3.22e-05 TTTGTTTTAT TTTTTGTT ATTTTTTTTA chr2L:13665440-13665560 59 3.22e-05 TTGTCTCTGT TTTTTGTT GCTGGGCGCG chrX:6730791-6730911 55 3.22e-05 TTTTTTTTAG TTTTTGTT ACTCTTGACG chrX:10021907-10022027 28 3.22e-05 ACGATTATGT TTTTTGTT TTGTTTTCTC chrX:8518125-8518245 31 3.22e-05 ttttcctatt tttttgtt gtattctagt chr3L:9551310-9551430 95 3.22e-05 CTTCCGATGC TTTTTGTT GTTATTGGAG chrX:13114966-13115086 50 3.22e-05 GTTATTTTCA TTTTTGTT TGCTGGCTGC chrX:19165424-19165544 85 3.22e-05 TCTTTTTCGG TTTTTGTT TTGTTTATGG chr3L:18080123-18080243 25 3.22e-05 GGCCCGTCGC TTTTTGTT TTCCTTCTCT chr3L:8775517-8775637 74 3.22e-05 TTGCTTTATA TTTTTGTT GTTCTTTTTT chr2R:22546073-22546193 77 3.22e-05 tttttcgatt tttttgtt gtttttttCA chr3R:30289457-30289577 108 3.22e-05 TTGCACTTCT TTTTTGTT TTAAC chrX:16906218-16906338 12 3.22e-05 tttttttttt tttttgtt ttttttGGGC chrX:18866422-18866542 35 3.22e-05 CCTTTTTACC TTTTTGTT GCGTCCCTTT chrX:13879552-13879672 83 3.22e-05 TATGCGTTGA Tttttgtt tttgttttgc chr3R:24004092-24004212 24 3.22e-05 CATCGGtttc tttttgtt tgtttgtttt chrX:5768985-5769105 32 3.22e-05 tttcttgtag tttttgtt ttcatttcgg chrX:7973426-7973546 31 3.22e-05 TCCTTACTCC TTTTTGTT TATTGGTTTT chr3R:16334461-16334581 48 3.22e-05 TGTTTGTGGT TTTTTGTT GTTGGCTTTA chrX:13116515-13116635 63 3.22e-05 CTTCTTTTTA TTTTTGTT GTCTTTAGCC chrX:7980937-7981057 90 3.22e-05 ttttttcctt tttttgtt ttttcttctt chr2L:20916938-20917058 40 5.61e-05 tttttctgtg ttcttgtt ccgttctctt chr3L:83134-83254 105 5.61e-05 GGCATTAATT TTCTTGTT TTGGATTT chr3R:28914232-28914352 89 5.61e-05 TTTATTGTTC TTCTTGTT GACTGGTTGT chr2R:21065131-21065251 30 5.61e-05 TTAATATGGT TTCTTGTT AACAAGGCTT chrX:19485201-19485321 85 5.61e-05 tttcttgctg ttcttGTT CTGAGCGAGA chr3L:6155246-6155366 66 9.84e-05 ttttaattgt tttttttt ctttgttGCT chr3R:14765757-14765877 30 9.84e-05 TTGAAATTCT TTTTTTTT TATTGTATAT chr3R:21938664-21938784 108 9.84e-05 TTTTCGAACT TTTTTTTT GTGTA chrX:3158752-3158872 52 9.84e-05 ACTGGAGttt tttttttt ataatatatc chr3L:5943641-5943761 111 9.84e-05 tttttttctt tttttttt tG chrX:3151276-3151396 94 9.84e-05 TGCTCCCttt tttttttt ttttttttGT chr3L:11136459-11136579 51 9.84e-05 ATCTGGGGGT TTTTTTTT CCCtgttgat chr3L:10534025-10534145 66 9.84e-05 TTGTGTGTGC TTTTTTTT TAGCGCTTTT chr2R:23637951-23638071 87 1.54e-04 tgtTGGCCCG CTTTTGTT GTTTCCATTT chr3L:12615166-12615286 54 1.54e-04 CTTCCTGCGA ttcttttt tttttttttt chrX:13406390-13406510 48 1.54e-04 gttttttctt ttcttttt CTATATATGT chr3R:30005448-30005568 76 1.54e-04 TCttcttttt ttcttttt catttttttt chr2L:2823061-2823181 96 1.54e-04 TTTCCTTTTT TTCTTTTT GTAAAAACAT chrX:6632032-6632152 80 1.78e-04 gtcttgttgt tttttgct gctgCTTTAC chrX:6708205-6708325 63 1.78e-04 AGACTGCGTC TTTTTGCT ATTTTTTTCT chr2L:7466418-7466538 59 1.78e-04 CCGACGACCG TTTTTGCT CGTTTTGGTT chr2L:14997554-14997674 84 1.78e-04 CGATGGGAGC TTTTTGCT CGACCGCTAA chrX:12675418-12675538 70 1.78e-04 TCCTTTTAGT TTTTTGCT GCTGTCTGCG chr3R:20280549-20280669 4 1.78e-04 TTA TTTTTGCT CCATCCGCAA chrX:17726115-17726235 41 1.78e-04 ttttgttttg tttttgct tgcccttctc chr2R:18308040-18308160 101 1.95e-04 TCGTATTCCC CTCTTGTT AAGGGGAATG chrX:8592766-8592886 26 2.13e-04 GCTCCATttg ttcttgct gtcgctgttg chr3L:18038482-18038602 109 2.69e-04 TGTTTTTTTT CTTTTTTT GGTC chrX:6803982-6804102 66 2.69e-04 CGCGCACCCT ttgttgtt gcatttgtag chr3R:21948745-21948865 108 2.69e-04 CGCTTTTAGC CTTTTTTT ACCGG chrX:7222233-7222353 98 2.69e-04 ttattgaatt ttgttgtt gtattttctt chr3L:14481531-14481651 31 2.69e-04 CTTGTCCCTC TTGTTGTT TCTGTTGCCG chr2R:20580830-20580950 19 2.69e-04 AGTACTGCCC CTTTTTTT CGCTTTGTTT chr3R:10592940-10593060 31 2.69e-04 GTTGGCTCCA TTGTTGTT ACTTTTTGCA chr3R:9381099-9381219 25 2.69e-04 TGTTCGCCGC CTTTTTTT ACCATTATTT chr2L:21030381-21030501 40 3.01e-04 CAAAAAAAAG TTTTTTCT CTCTTTTTGC chr3L:8360369-8360489 76 3.24e-04 ATCCGTATCT CTCTTTTT CGAGGAGGCA chr3L:8028106-8028226 44 3.24e-04 TTCGTGATTT CTCTTTTT CCGTTGCTTT chr3L:14059704-14059824 6 3.24e-04 attct ctcttttt atgcactctt chr3R:18146806-18146926 89 3.24e-04 CTGGCTGTGG CTCTTTTT ATGAATATGA chr2L:20812629-20812749 65 3.24e-04 TTGTACGCTG CTCttttt catttattta chr2R:23432173-23432293 74 3.89e-04 AATTttttta ttttcgtt ttcgttttcg chr3L:4336781-4336901 67 3.89e-04 ACTCCACGCC TTCTTTCT CAGTGTACAA chr3R:13716211-13716331 72 3.89e-04 tttcgtttcg ttttcgtt ttTTACTATT chr2R:21543350-21543470 73 4.21e-04 TTTACTCCGC ttgttttt gtgttttttt chr3L:10726133-10726253 78 4.21e-04 ATTTTTTGCC TTGTTTTT TATTTGCGTA chr2L:13550834-13550954 14 4.52e-04 gcatctccct ctcttgct ctcctctcCG chr3R:26543515-26543635 85 4.52e-04 TCATGCCTTG TTCTCGTT TTTGTCTCTC chr3L:18783580-18783700 5 4.70e-04 TCGT CTGTTGTT GATTTGCTCG chr3R:25518103-25518223 63 5.43e-04 TTTGTTGCTC CTTTTTCT GCTCAGTATT chr3L:2873227-2873347 79 5.43e-04 ATTTTTATTA TTTTCTTT ATTTTTTGTG chrX:4462086-4462206 87 6.02e-04 ATCGCTCGCT CTCTTTCT GGCGCCTCAG chr3L:12096954-12097074 96 6.02e-04 AATTTGTACG TTCTCTTT CATATCAGAA chrX:4200738-4200858 33 6.02e-04 CTGAGTTCCT CTCTTTCT ATAGTCATCT chr2L:1617871-1617991 96 6.02e-04 ATGGGTGCct ctctttct ctgcgccgcg chr2R:7370396-7370516 42 6.43e-04 TATTTTACCT TTTTCGCT TTCAAACCCA chr3R:10539686-10539806 113 7.80e-04 TTGGTATTAA TTTTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8231772-8231892 3.2e-05 59_[+3]_53 chr2L:13665440-13665560 3.2e-05 58_[+3]_54 chrX:6730791-6730911 3.2e-05 54_[+3]_58 chrX:10021907-10022027 3.2e-05 27_[+3]_85 chrX:8518125-8518245 3.2e-05 30_[+3]_82 chr3L:9551310-9551430 3.2e-05 94_[+3]_18 chrX:13114966-13115086 3.2e-05 49_[+3]_63 chrX:19165424-19165544 3.2e-05 84_[+3]_28 chr3L:18080123-18080243 3.2e-05 24_[+3]_88 chr3L:8775517-8775637 3.2e-05 73_[+3]_39 chr2R:22546073-22546193 3.2e-05 76_[+3]_36 chr3R:30289457-30289577 3.2e-05 107_[+3]_5 chrX:16906218-16906338 3.2e-05 11_[+3]_101 chrX:18866422-18866542 3.2e-05 34_[+3]_78 chrX:13879552-13879672 3.2e-05 82_[+3]_30 chr3R:24004092-24004212 3.2e-05 23_[+3]_89 chrX:5768985-5769105 3.2e-05 31_[+3]_81 chrX:7973426-7973546 3.2e-05 30_[+3]_82 chr3R:16334461-16334581 3.2e-05 47_[+3]_65 chrX:13116515-13116635 3.2e-05 62_[+3]_50 chrX:7980937-7981057 3.2e-05 89_[+3]_23 chr2L:20916938-20917058 5.6e-05 39_[+3]_73 chr3L:83134-83254 5.6e-05 104_[+3]_8 chr3R:28914232-28914352 5.6e-05 88_[+3]_24 chr2R:21065131-21065251 5.6e-05 29_[+3]_83 chrX:19485201-19485321 5.6e-05 84_[+3]_28 chr3L:6155246-6155366 9.8e-05 65_[+3]_47 chr3R:14765757-14765877 9.8e-05 29_[+3]_83 chr3R:21938664-21938784 9.8e-05 107_[+3]_5 chrX:3158752-3158872 9.8e-05 51_[+3]_61 chr3L:5943641-5943761 9.8e-05 110_[+3]_2 chrX:3151276-3151396 9.8e-05 93_[+3]_19 chr3L:11136459-11136579 9.8e-05 50_[+3]_62 chr3L:10534025-10534145 9.8e-05 65_[+3]_47 chr2R:23637951-23638071 0.00015 86_[+3]_26 chr3L:12615166-12615286 0.00015 53_[+3]_59 chrX:13406390-13406510 0.00015 47_[+3]_65 chr3R:30005448-30005568 0.00015 75_[+3]_37 chr2L:2823061-2823181 0.00015 95_[+3]_17 chrX:6632032-6632152 0.00018 79_[+3]_33 chrX:6708205-6708325 0.00018 62_[+3]_50 chr2L:7466418-7466538 0.00018 58_[+3]_54 chr2L:14997554-14997674 0.00018 83_[+3]_29 chrX:12675418-12675538 0.00018 69_[+3]_43 chr3R:20280549-20280669 0.00018 3_[+3]_109 chrX:17726115-17726235 0.00018 40_[+3]_72 chr2R:18308040-18308160 0.0002 100_[+3]_12 chrX:8592766-8592886 0.00021 25_[+3]_87 chr3L:18038482-18038602 0.00027 108_[+3]_4 chrX:6803982-6804102 0.00027 65_[+3]_47 chr3R:21948745-21948865 0.00027 107_[+3]_5 chrX:7222233-7222353 0.00027 97_[+3]_15 chr3L:14481531-14481651 0.00027 30_[+3]_82 chr2R:20580830-20580950 0.00027 18_[+3]_94 chr3R:10592940-10593060 0.00027 30_[+3]_82 chr3R:9381099-9381219 0.00027 24_[+3]_88 chr2L:21030381-21030501 0.0003 39_[+3]_73 chr3L:8360369-8360489 0.00032 75_[+3]_37 chr3L:8028106-8028226 0.00032 43_[+3]_69 chr3L:14059704-14059824 0.00032 5_[+3]_107 chr3R:18146806-18146926 0.00032 88_[+3]_24 chr2L:20812629-20812749 0.00032 64_[+3]_48 chr2R:23432173-23432293 0.00039 73_[+3]_39 chr3L:4336781-4336901 0.00039 66_[+3]_46 chr3R:13716211-13716331 0.00039 71_[+3]_41 chr2R:21543350-21543470 0.00042 72_[+3]_40 chr3L:10726133-10726253 0.00042 77_[+3]_35 chr2L:13550834-13550954 0.00045 13_[+3]_99 chr3R:26543515-26543635 0.00045 84_[+3]_28 chr3L:18783580-18783700 0.00047 4_[+3]_108 chr3R:25518103-25518223 0.00054 62_[+3]_50 chr3L:2873227-2873347 0.00054 78_[+3]_34 chrX:4462086-4462206 0.0006 86_[+3]_26 chr3L:12096954-12097074 0.0006 95_[+3]_17 chrX:4200738-4200858 0.0006 32_[+3]_80 chr2L:1617871-1617991 0.0006 95_[+3]_17 chr2R:7370396-7370516 0.00064 41_[+3]_71 chr3R:10539686-10539806 0.00078 112_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTKTT width=8 seqs=78 chrX:8231772-8231892 ( 60) TTTTTGTT 1 chr2L:13665440-13665560 ( 59) TTTTTGTT 1 chrX:6730791-6730911 ( 55) TTTTTGTT 1 chrX:10021907-10022027 ( 28) TTTTTGTT 1 chrX:8518125-8518245 ( 31) TTTTTGTT 1 chr3L:9551310-9551430 ( 95) TTTTTGTT 1 chrX:13114966-13115086 ( 50) TTTTTGTT 1 chrX:19165424-19165544 ( 85) TTTTTGTT 1 chr3L:18080123-18080243 ( 25) TTTTTGTT 1 chr3L:8775517-8775637 ( 74) TTTTTGTT 1 chr2R:22546073-22546193 ( 77) TTTTTGTT 1 chr3R:30289457-30289577 ( 108) TTTTTGTT 1 chrX:16906218-16906338 ( 12) TTTTTGTT 1 chrX:18866422-18866542 ( 35) TTTTTGTT 1 chrX:13879552-13879672 ( 83) TTTTTGTT 1 chr3R:24004092-24004212 ( 24) TTTTTGTT 1 chrX:5768985-5769105 ( 32) TTTTTGTT 1 chrX:7973426-7973546 ( 31) TTTTTGTT 1 chr3R:16334461-16334581 ( 48) TTTTTGTT 1 chrX:13116515-13116635 ( 63) TTTTTGTT 1 chrX:7980937-7981057 ( 90) TTTTTGTT 1 chr2L:20916938-20917058 ( 40) TTCTTGTT 1 chr3L:83134-83254 ( 105) TTCTTGTT 1 chr3R:28914232-28914352 ( 89) TTCTTGTT 1 chr2R:21065131-21065251 ( 30) TTCTTGTT 1 chrX:19485201-19485321 ( 85) TTCTTGTT 1 chr3L:6155246-6155366 ( 66) TTTTTTTT 1 chr3R:14765757-14765877 ( 30) TTTTTTTT 1 chr3R:21938664-21938784 ( 108) TTTTTTTT 1 chrX:3158752-3158872 ( 52) TTTTTTTT 1 chr3L:5943641-5943761 ( 111) TTTTTTTT 1 chrX:3151276-3151396 ( 94) TTTTTTTT 1 chr3L:11136459-11136579 ( 51) TTTTTTTT 1 chr3L:10534025-10534145 ( 66) TTTTTTTT 1 chr2R:23637951-23638071 ( 87) CTTTTGTT 1 chr3L:12615166-12615286 ( 54) TTCTTTTT 1 chrX:13406390-13406510 ( 48) TTCTTTTT 1 chr3R:30005448-30005568 ( 76) TTCTTTTT 1 chr2L:2823061-2823181 ( 96) TTCTTTTT 1 chrX:6632032-6632152 ( 80) TTTTTGCT 1 chrX:6708205-6708325 ( 63) TTTTTGCT 1 chr2L:7466418-7466538 ( 59) TTTTTGCT 1 chr2L:14997554-14997674 ( 84) TTTTTGCT 1 chrX:12675418-12675538 ( 70) TTTTTGCT 1 chr3R:20280549-20280669 ( 4) TTTTTGCT 1 chrX:17726115-17726235 ( 41) TTTTTGCT 1 chr2R:18308040-18308160 ( 101) CTCTTGTT 1 chrX:8592766-8592886 ( 26) TTCTTGCT 1 chr3L:18038482-18038602 ( 109) CTTTTTTT 1 chrX:6803982-6804102 ( 66) TTGTTGTT 1 chr3R:21948745-21948865 ( 108) CTTTTTTT 1 chrX:7222233-7222353 ( 98) TTGTTGTT 1 chr3L:14481531-14481651 ( 31) TTGTTGTT 1 chr2R:20580830-20580950 ( 19) CTTTTTTT 1 chr3R:10592940-10593060 ( 31) TTGTTGTT 1 chr3R:9381099-9381219 ( 25) CTTTTTTT 1 chr2L:21030381-21030501 ( 40) TTTTTTCT 1 chr3L:8360369-8360489 ( 76) CTCTTTTT 1 chr3L:8028106-8028226 ( 44) CTCTTTTT 1 chr3L:14059704-14059824 ( 6) CTCTTTTT 1 chr3R:18146806-18146926 ( 89) CTCTTTTT 1 chr2L:20812629-20812749 ( 65) CTCTTTTT 1 chr2R:23432173-23432293 ( 74) TTTTCGTT 1 chr3L:4336781-4336901 ( 67) TTCTTTCT 1 chr3R:13716211-13716331 ( 72) TTTTCGTT 1 chr2R:21543350-21543470 ( 73) TTGTTTTT 1 chr3L:10726133-10726253 ( 78) TTGTTTTT 1 chr2L:13550834-13550954 ( 14) CTCTTGCT 1 chr3R:26543515-26543635 ( 85) TTCTCGTT 1 chr3L:18783580-18783700 ( 5) CTGTTGTT 1 chr3R:25518103-25518223 ( 63) CTTTTTCT 1 chr3L:2873227-2873347 ( 79) TTTTCTTT 1 chrX:4462086-4462206 ( 87) CTCTTTCT 1 chr3L:12096954-12097074 ( 96) TTCTCTTT 1 chrX:4200738-4200858 ( 33) CTCTTTCT 1 chr2L:1617871-1617991 ( 96) CTCTTTCT 1 chr2R:7370396-7370516 ( 42) TTTTCGCT 1 chr3R:10539686-10539806 ( 113) TTTTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.41929 E= 1.1e-010 -1293 5 -1293 146 -1293 -1293 -1293 182 -1293 49 -127 112 -1293 -1293 -1293 182 -1293 -145 -1293 170 -1293 -403 145 49 -1293 -4 -1293 149 -1293 -1293 -1293 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.1e-010 0.000000 0.217949 0.000000 0.782051 0.000000 0.000000 0.000000 1.000000 0.000000 0.294872 0.089744 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.012821 0.589744 0.397436 0.000000 0.205128 0.000000 0.794872 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-3 regular expression -------------------------------------------------------------------------------- [TC]T[TC]TT[GT][TC]T -------------------------------------------------------------------------------- Time 20.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACAAAA MEME-4 width = 8 sites = 78 llr = 584 E-value = 4.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8792aaa9 pos.-specific C 21:6:::: probability G 1111:::: matrix T :::::::: bits 2.2 2.0 1.8 *** 1.6 **** Relative 1.3 * **** Entropy 1.1 * **** (10.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8349990-8350110 35 3.64e-05 AACCGCGACA AAACAAAA CGCGGAAACG chr3L:5551154-5551274 45 3.64e-05 GGCAGACGCA AAACAAAA AGGCGAAAAA chrX:4671327-4671447 31 3.64e-05 gcgagaacag aaacaaaa aaataaaaaa chr2R:14987134-14987254 80 3.64e-05 CCAAAAGCAC AAACAAAA CACTGTAACC chrX:17732238-17732358 13 3.64e-05 aaaaaacaaa aaacaaaa agccccaaac chr2R:18308040-18308160 9 3.64e-05 TACaataa aaacaaaa cggataaaat chrX:4435051-4435171 45 3.64e-05 ACATAAGCAA AAACAAAA AATAAAAAAA chr2R:11180827-11180947 50 3.64e-05 aataaaacaa aaacaaaa accaagaaaa chr2L:3095549-3095669 69 3.64e-05 AAAAAACGCA AAACAAAA CGCTAAACAA chr3L:19021847-19021967 83 3.64e-05 AGGGGGAAGG AAACAAAA AGCCTCCAGA chr2R:19157691-19157811 39 3.64e-05 AGGCTAGCaa aaacaaaa aaaggggcag chr2R:15906087-15906207 90 3.64e-05 aggaaaatca aaacaaaa gctgcaaaaa chr2L:10794155-10794275 72 3.64e-05 caagacaaga aaacaaaa GTGGAGCAAC chr3R:25596778-25596898 89 3.64e-05 aacaagaaac aaacaaaa gaatgaagaa chr2L:13122701-13122821 51 3.64e-05 GCCAAAACTA AAACAAAA AAGAGCAACG chrX:5300743-5300863 67 3.64e-05 GATGATATTT AAACAAAA AGTGGCAAAT chr2R:16154056-16154176 69 3.64e-05 gtaataaacg aaacaaaa aacagaaaaa chr2R:15032863-15032983 75 3.64e-05 GAAAGAGGAA AAACAAAA GGGCCAAATG chrX:11785157-11785277 113 3.64e-05 GCGCATGCGC AAACAAAA chr3L:9367603-9367723 66 8.64e-05 ACAATGCAAA AAAAAAAA AGAGAAAAAA chrX:4200738-4200858 99 8.64e-05 aaaaaagaaa aaaaaaaa caaGGAGGGT chrX:19359257-19359377 61 8.64e-05 GCACaaagcg aaaaaaaa gaaaaataaa chrX:4564137-4564257 14 8.64e-05 aaaaaaaacg aaaaaaaa aaacgaaaaa chr3R:25529439-25529559 55 8.64e-05 AAAAAATGAT AAAAAAAA TCGAGAATAA chr2L:2823061-2823181 2 8.64e-05 T aaaaaaaa aaacaaaaaa chr3R:13524838-13524958 23 8.64e-05 AAAAAAAAAC AAAAAAAA AGTGAAAGGA chrX:9344240-9344360 91 8.64e-05 ctaaaagaca aaaaaaaa aaaaTATATA chrX:17806476-17806596 86 8.64e-05 acgaaagcgc aaaaaaaa atacaacaga chr3R:26004492-26004612 91 8.64e-05 GCAAAATCTT AAAAAAAA AGCGAAACAC chr3R:29726012-29726132 82 8.64e-05 aaaaaataga aaaaaaaa CCTGCGACTG chr3L:10814070-10814190 57 8.64e-05 cagcaggggg aaaaaaaa gtataaaaaa chr2R:22586982-22587102 62 1.40e-04 CCCACACAAA CAACAAAA TAAAAAAGAA chr3L:11368495-11368615 5 1.40e-04 GCAA CAACAAAA AGTATCTTTC chrX:16723721-16723841 23 1.40e-04 GCGTCTAAAT caacaaaa ccaacaacaa chr3R:11449763-11449883 52 1.40e-04 CAATTGGGAG AGACAAAA CGGAACCAAA chr2L:14997554-14997674 26 1.40e-04 GGTGAGCAAA AGACAAAA CCTTCCCAAA chr3L:18057895-18058015 51 1.40e-04 TACCACTGAT AGACAAAA CCCTTAATCT chr3R:21824542-21824662 80 1.40e-04 AAAAGGAGAA CAACAAAA GGGCAGGGAA chr3L:2426545-2426665 49 1.40e-04 GATAGCAAGA CAACAAAA GCGAGCACGG chr2L:16590477-16590597 6 1.40e-04 AAACA CAACAAAA ATAAGTACGA chr3L:69452-69572 90 1.77e-04 GGAAATGTGA AAAGAAAA AAACGTAAAA chrX:5051233-5051353 1 1.77e-04 . aaagaaaa gagtgcggag chr2R:8655409-8655529 43 1.77e-04 aaaaaaaaga aaagaaaa acacaaaata chr2R:18291315-18291435 102 1.77e-04 gaaaagaaaa aaagaaaa aaaggaagaa chr2R:15881657-15881777 56 1.77e-04 AAAAAAGCTT AAAGAAAA CACAAGCCCC chrX:10932408-10932528 40 1.77e-04 TGGTGGAGCA AAAGAAAA CTGGTTCCGG chrX:15608863-15608983 20 1.77e-04 aaggagaaat aaagaaaa agatatatac chr3R:8922705-8922825 30 1.77e-04 aagaaacaag aaagaaaa gaaaCCGGCC chr2R:10057974-10058094 98 2.04e-04 AAAAAGGAGA ACACAAAA TGATCACAAG chr3L:14481531-14481651 104 2.04e-04 CGCGCTaaat acacaaaa aaaaaaaaa chr3L:6447852-6447972 6 2.04e-04 AAACA ACACAAAA AGTTGTAAAA chr3R:30285110-30285230 11 2.04e-04 CAGCTGCCAG ACACAAAA ATAAAACGCA chrX:17488538-17488658 52 2.31e-04 aggaaagcaa aagcaaaa gcaaatgcga chrX:13879552-13879672 37 2.31e-04 GTAGAAAAGA AAGCAAAA AGTAAAAGAA chr2R:15664676-15664796 3 2.31e-04 CC AAGCaaaa atacaaaaaa chr3R:11859271-11859391 88 2.58e-04 agcagaatgc gaacaaaa acagaaatag chr2R:18879264-18879384 65 3.32e-04 AAAAGTTATA AGAAAAAA TCCCTGTGTG chrX:18544890-18545010 112 3.32e-04 Gaaaaaagaa caaaaaaa c chr2L:10009580-10009700 89 3.32e-04 GTGTGCATGC AGAAAAAA AGTAAAATTG chr3R:11865245-11865365 1 4.43e-04 . AGAGAAAA ATCAAGCCGT chrX:13948935-13949055 55 4.43e-04 AGGACCACCG ACAAAAAA CGAGCACCAA chrX:7222233-7222353 14 4.43e-04 GTTTACAGAG AGAGAAAA TAATGCAACT chrX:13209564-13209684 71 4.43e-04 ATAAAAACGG ACAAAAAA GGACACAAAC chr2L:7084566-7084686 97 4.62e-04 CAGAAGCGAT CCACAAAA AGCTTGCGCT chrX:15080051-15080171 39 4.62e-04 ATGCCGGGCA CCACAAAA AGTTGGGACT chr3L:18783580-18783700 105 4.89e-04 atatacaata acagaaaa agaaaCAC chr2L:5236600-5236720 12 5.66e-04 CCGGGCTATG CAGCAAAA CAATAAACGC chr2R:24584596-24584716 68 5.66e-04 AGCACGGCAA CAGCAAAA AGAGCAAAAT chr2R:12457562-12457682 53 5.66e-04 TCAAAGTCGA AGGCAAAA CGAGAACGGG chr3L:9462907-9463027 56 5.66e-04 ataataaaat aGGCAAAA AGACAGGCCC chr3R:30357169-30357289 45 6.48e-04 AGAACTTGAC AAACAAAC ATTGCATTGT chr3R:4236684-4236804 26 6.48e-04 TCGCAACAAT AAACAAAG CTCCTCGGAA chr3L:9551310-9551430 13 6.48e-04 GGAGCCAGAT AAACAAAC GAGGCAACAA chrX:9252344-9252464 52 6.48e-04 GTGCCATGGT AAACAAAG GGAAAAGAAC chr3L:21013594-21013714 66 7.04e-04 ACAAAAGCAC GAAAAAAA CGGCAGAGGG chr2L:7334250-7334370 16 7.25e-04 TAAAAAGTGC GGACAAAA GCAGAGTCGC chr3R:19317473-19317593 62 7.25e-04 GTCAGACGGG GGACAAAA GTAGCAAAGT chr2R:7370396-7370516 8 9.41e-04 CGAACTG CAGAAAAA GCAGCAGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8349990-8350110 3.6e-05 34_[+4]_78 chr3L:5551154-5551274 3.6e-05 44_[+4]_68 chrX:4671327-4671447 3.6e-05 30_[+4]_82 chr2R:14987134-14987254 3.6e-05 79_[+4]_33 chrX:17732238-17732358 3.6e-05 12_[+4]_100 chr2R:18308040-18308160 3.6e-05 8_[+4]_104 chrX:4435051-4435171 3.6e-05 44_[+4]_68 chr2R:11180827-11180947 3.6e-05 49_[+4]_63 chr2L:3095549-3095669 3.6e-05 68_[+4]_44 chr3L:19021847-19021967 3.6e-05 82_[+4]_30 chr2R:19157691-19157811 3.6e-05 38_[+4]_74 chr2R:15906087-15906207 3.6e-05 89_[+4]_23 chr2L:10794155-10794275 3.6e-05 71_[+4]_41 chr3R:25596778-25596898 3.6e-05 88_[+4]_24 chr2L:13122701-13122821 3.6e-05 50_[+4]_62 chrX:5300743-5300863 3.6e-05 66_[+4]_46 chr2R:16154056-16154176 3.6e-05 68_[+4]_44 chr2R:15032863-15032983 3.6e-05 74_[+4]_38 chrX:11785157-11785277 3.6e-05 112_[+4] chr3L:9367603-9367723 8.6e-05 65_[+4]_47 chrX:4200738-4200858 8.6e-05 98_[+4]_14 chrX:19359257-19359377 8.6e-05 60_[+4]_52 chrX:4564137-4564257 8.6e-05 13_[+4]_99 chr3R:25529439-25529559 8.6e-05 54_[+4]_58 chr2L:2823061-2823181 8.6e-05 1_[+4]_111 chr3R:13524838-13524958 8.6e-05 22_[+4]_90 chrX:9344240-9344360 8.6e-05 90_[+4]_22 chrX:17806476-17806596 8.6e-05 85_[+4]_27 chr3R:26004492-26004612 8.6e-05 90_[+4]_22 chr3R:29726012-29726132 8.6e-05 81_[+4]_31 chr3L:10814070-10814190 8.6e-05 56_[+4]_56 chr2R:22586982-22587102 0.00014 61_[+4]_51 chr3L:11368495-11368615 0.00014 4_[+4]_108 chrX:16723721-16723841 0.00014 22_[+4]_90 chr3R:11449763-11449883 0.00014 51_[+4]_61 chr2L:14997554-14997674 0.00014 25_[+4]_87 chr3L:18057895-18058015 0.00014 50_[+4]_62 chr3R:21824542-21824662 0.00014 79_[+4]_33 chr3L:2426545-2426665 0.00014 48_[+4]_64 chr2L:16590477-16590597 0.00014 5_[+4]_107 chr3L:69452-69572 0.00018 89_[+4]_23 chrX:5051233-5051353 0.00018 [+4]_112 chr2R:8655409-8655529 0.00018 42_[+4]_70 chr2R:18291315-18291435 0.00018 101_[+4]_11 chr2R:15881657-15881777 0.00018 55_[+4]_57 chrX:10932408-10932528 0.00018 39_[+4]_73 chrX:15608863-15608983 0.00018 19_[+4]_93 chr3R:8922705-8922825 0.00018 29_[+4]_83 chr2R:10057974-10058094 0.0002 97_[+4]_15 chr3L:14481531-14481651 0.0002 103_[+4]_9 chr3L:6447852-6447972 0.0002 5_[+4]_107 chr3R:30285110-30285230 0.0002 10_[+4]_102 chrX:17488538-17488658 0.00023 51_[+4]_61 chrX:13879552-13879672 0.00023 36_[+4]_76 chr2R:15664676-15664796 0.00023 2_[+4]_110 chr3R:11859271-11859391 0.00026 87_[+4]_25 chr2R:18879264-18879384 0.00033 64_[+4]_48 chrX:18544890-18545010 0.00033 111_[+4]_1 chr2L:10009580-10009700 0.00033 88_[+4]_24 chr3R:11865245-11865365 0.00044 [+4]_112 chrX:13948935-13949055 0.00044 54_[+4]_58 chrX:7222233-7222353 0.00044 13_[+4]_99 chrX:13209564-13209684 0.00044 70_[+4]_42 chr2L:7084566-7084686 0.00046 96_[+4]_16 chrX:15080051-15080171 0.00046 38_[+4]_74 chr3L:18783580-18783700 0.00049 104_[+4]_8 chr2L:5236600-5236720 0.00057 11_[+4]_101 chr2R:24584596-24584716 0.00057 67_[+4]_45 chr2R:12457562-12457682 0.00057 52_[+4]_60 chr3L:9462907-9463027 0.00057 55_[+4]_57 chr3R:30357169-30357289 0.00065 44_[+4]_68 chr3R:4236684-4236804 0.00065 25_[+4]_87 chr3L:9551310-9551430 0.00065 12_[+4]_100 chrX:9252344-9252464 0.00065 51_[+4]_61 chr3L:21013594-21013714 0.0007 65_[+4]_47 chr2L:7334250-7334370 0.00072 15_[+4]_97 chr3R:19317473-19317593 0.00072 61_[+4]_51 chr2R:7370396-7370516 0.00094 7_[+4]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACAAAA width=8 seqs=78 chr3R:8349990-8350110 ( 35) AAACAAAA 1 chr3L:5551154-5551274 ( 45) AAACAAAA 1 chrX:4671327-4671447 ( 31) AAACAAAA 1 chr2R:14987134-14987254 ( 80) AAACAAAA 1 chrX:17732238-17732358 ( 13) AAACAAAA 1 chr2R:18308040-18308160 ( 9) AAACAAAA 1 chrX:4435051-4435171 ( 45) AAACAAAA 1 chr2R:11180827-11180947 ( 50) AAACAAAA 1 chr2L:3095549-3095669 ( 69) AAACAAAA 1 chr3L:19021847-19021967 ( 83) AAACAAAA 1 chr2R:19157691-19157811 ( 39) AAACAAAA 1 chr2R:15906087-15906207 ( 90) AAACAAAA 1 chr2L:10794155-10794275 ( 72) AAACAAAA 1 chr3R:25596778-25596898 ( 89) AAACAAAA 1 chr2L:13122701-13122821 ( 51) AAACAAAA 1 chrX:5300743-5300863 ( 67) AAACAAAA 1 chr2R:16154056-16154176 ( 69) AAACAAAA 1 chr2R:15032863-15032983 ( 75) AAACAAAA 1 chrX:11785157-11785277 ( 113) AAACAAAA 1 chr3L:9367603-9367723 ( 66) AAAAAAAA 1 chrX:4200738-4200858 ( 99) AAAAAAAA 1 chrX:19359257-19359377 ( 61) AAAAAAAA 1 chrX:4564137-4564257 ( 14) AAAAAAAA 1 chr3R:25529439-25529559 ( 55) AAAAAAAA 1 chr2L:2823061-2823181 ( 2) AAAAAAAA 1 chr3R:13524838-13524958 ( 23) AAAAAAAA 1 chrX:9344240-9344360 ( 91) AAAAAAAA 1 chrX:17806476-17806596 ( 86) AAAAAAAA 1 chr3R:26004492-26004612 ( 91) AAAAAAAA 1 chr3R:29726012-29726132 ( 82) AAAAAAAA 1 chr3L:10814070-10814190 ( 57) AAAAAAAA 1 chr2R:22586982-22587102 ( 62) CAACAAAA 1 chr3L:11368495-11368615 ( 5) CAACAAAA 1 chrX:16723721-16723841 ( 23) CAACAAAA 1 chr3R:11449763-11449883 ( 52) AGACAAAA 1 chr2L:14997554-14997674 ( 26) AGACAAAA 1 chr3L:18057895-18058015 ( 51) AGACAAAA 1 chr3R:21824542-21824662 ( 80) CAACAAAA 1 chr3L:2426545-2426665 ( 49) CAACAAAA 1 chr2L:16590477-16590597 ( 6) CAACAAAA 1 chr3L:69452-69572 ( 90) AAAGAAAA 1 chrX:5051233-5051353 ( 1) AAAGAAAA 1 chr2R:8655409-8655529 ( 43) AAAGAAAA 1 chr2R:18291315-18291435 ( 102) AAAGAAAA 1 chr2R:15881657-15881777 ( 56) AAAGAAAA 1 chrX:10932408-10932528 ( 40) AAAGAAAA 1 chrX:15608863-15608983 ( 20) AAAGAAAA 1 chr3R:8922705-8922825 ( 30) AAAGAAAA 1 chr2R:10057974-10058094 ( 98) ACACAAAA 1 chr3L:14481531-14481651 ( 104) ACACAAAA 1 chr3L:6447852-6447972 ( 6) ACACAAAA 1 chr3R:30285110-30285230 ( 11) ACACAAAA 1 chrX:17488538-17488658 ( 52) AAGCAAAA 1 chrX:13879552-13879672 ( 37) AAGCAAAA 1 chr2R:15664676-15664796 ( 3) AAGCAAAA 1 chr3R:11859271-11859391 ( 88) GAACAAAA 1 chr2R:18879264-18879384 ( 65) AGAAAAAA 1 chrX:18544890-18545010 ( 112) CAAAAAAA 1 chr2L:10009580-10009700 ( 89) AGAAAAAA 1 chr3R:11865245-11865365 ( 1) AGAGAAAA 1 chrX:13948935-13949055 ( 55) ACAAAAAA 1 chrX:7222233-7222353 ( 14) AGAGAAAA 1 chrX:13209564-13209684 ( 71) ACAAAAAA 1 chr2L:7084566-7084686 ( 97) CCACAAAA 1 chrX:15080051-15080171 ( 39) CCACAAAA 1 chr3L:18783580-18783700 ( 105) ACAGAAAA 1 chr2L:5236600-5236720 ( 12) CAGCAAAA 1 chr2R:24584596-24584716 ( 68) CAGCAAAA 1 chr2R:12457562-12457682 ( 53) AGGCAAAA 1 chr3L:9462907-9463027 ( 56) AGGCAAAA 1 chr3R:30357169-30357289 ( 45) AAACAAAC 1 chr3R:4236684-4236804 ( 26) AAACAAAG 1 chr3L:9551310-9551430 ( 13) AAACAAAC 1 chrX:9252344-9252464 ( 52) AAACAAAG 1 chr3L:21013594-21013714 ( 66) GAAAAAAA 1 chr2L:7334250-7334370 ( 16) GGACAAAA 1 chr3R:19317473-19317593 ( 62) GGACAAAA 1 chr2R:7370396-7370516 ( 8) CAGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.41929 E= 4.0e-007 146 -45 -208 -1293 136 -87 -62 -1293 163 -1293 -108 -1293 -25 155 -62 -1293 179 -1293 -1293 -1293 179 -1293 -1293 -1293 179 -1293 -1293 -1293 171 -304 -307 -1293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 4.0e-007 0.794872 0.153846 0.051282 0.000000 0.743590 0.115385 0.141026 0.000000 0.897436 0.000000 0.102564 0.000000 0.243590 0.615385 0.141026 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.948718 0.025641 0.025641 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-4 regular expression -------------------------------------------------------------------------------- AAA[CA]AAAA -------------------------------------------------------------------------------- Time 26.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-5 width = 8 sites = 18 llr = 186 E-value = 2.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :aaa:::: pos.-specific C a::::1a9 probability G ::::a1:1 matrix T :::::8:: bits 2.2 * * * 2.0 * * * 1.8 ***** ** 1.6 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:12406799-12406919 82 1.41e-05 GAGATGGGTG CAAAGTCC AAGACAGACC chr3R:9389153-9389273 31 1.41e-05 ATTACAAAGT CAAAGTCC AATGAAGAAA chrX:20166817-20166937 64 1.41e-05 GGGTTCGGTT CAAAGTCC GAACACCGGT chrX:8592766-8592886 102 1.41e-05 CGCCAGCATA CAAAGTCC AATCAGAATA chr3L:83134-83254 41 1.41e-05 CGCCAGAGTC CAAAGTCC ATAAAGCATT chr3L:20387970-20388090 45 1.41e-05 CGTGCACTTC CAAAGTCC AATTCGGTGC chrX:9139255-9139375 62 1.41e-05 CCGATAAATC CAAAGTCC GGCAGCAGCT chr2R:6148137-6148257 20 1.41e-05 GGTCCGATGC CAAAGTCC GCCAgaccct chr2R:20665251-20665371 19 1.41e-05 GGGACTTGGG CAAAGTCC ATAAACTTGG chr2L:8002326-8002446 94 1.41e-05 ACGCTGGGTG CAAAGTCC ACTATGCGGA chr2R:16077944-16078064 63 1.41e-05 gtccacagtc caaagtcc atagtccata chr3R:10115120-10115240 59 1.41e-05 ATTGCGAATC CAAAGTCC ATTAAGTCGA chr2L:7207813-7207933 37 1.41e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chr2L:13550834-13550954 59 2.47e-05 TGTGTGAGTG CAAAGGCC AATAGCTGTT chrX:13209564-13209684 88 2.47e-05 AGGACACAAA CAAAGGCC AAGGAAAATA chrX:4564137-4564257 74 3.91e-05 AGATCAAGTC CAAAGTCG GGGGCATCTC chr2R:12457562-12457682 44 3.91e-05 ATGGCCAACT CAAAGTCG AAGGCAAAAC chr3L:16803415-16803535 52 4.96e-05 TCCATTGGCT CAAAGCCC AAAATGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:12406799-12406919 1.4e-05 81_[+5]_31 chr3R:9389153-9389273 1.4e-05 30_[+5]_82 chrX:20166817-20166937 1.4e-05 63_[+5]_49 chrX:8592766-8592886 1.4e-05 101_[+5]_11 chr3L:83134-83254 1.4e-05 40_[+5]_72 chr3L:20387970-20388090 1.4e-05 44_[+5]_68 chrX:9139255-9139375 1.4e-05 61_[+5]_51 chr2R:6148137-6148257 1.4e-05 19_[+5]_93 chr2R:20665251-20665371 1.4e-05 18_[+5]_94 chr2L:8002326-8002446 1.4e-05 93_[+5]_19 chr2R:16077944-16078064 1.4e-05 62_[+5]_50 chr3R:10115120-10115240 1.4e-05 58_[+5]_54 chr2L:7207813-7207933 1.4e-05 36_[+5]_76 chr2L:13550834-13550954 2.5e-05 58_[+5]_54 chrX:13209564-13209684 2.5e-05 87_[+5]_25 chrX:4564137-4564257 3.9e-05 73_[+5]_39 chr2R:12457562-12457682 3.9e-05 43_[+5]_69 chr3L:16803415-16803535 5e-05 51_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=18 chr3R:12406799-12406919 ( 82) CAAAGTCC 1 chr3R:9389153-9389273 ( 31) CAAAGTCC 1 chrX:20166817-20166937 ( 64) CAAAGTCC 1 chrX:8592766-8592886 ( 102) CAAAGTCC 1 chr3L:83134-83254 ( 41) CAAAGTCC 1 chr3L:20387970-20388090 ( 45) CAAAGTCC 1 chrX:9139255-9139375 ( 62) CAAAGTCC 1 chr2R:6148137-6148257 ( 20) CAAAGTCC 1 chr2R:20665251-20665371 ( 19) CAAAGTCC 1 chr2L:8002326-8002446 ( 94) CAAAGTCC 1 chr2R:16077944-16078064 ( 63) CAAAGTCC 1 chr3R:10115120-10115240 ( 59) CAAAGTCC 1 chr2L:7207813-7207933 ( 37) CAAAGTCC 1 chr2L:13550834-13550954 ( 59) CAAAGGCC 1 chrX:13209564-13209684 ( 88) CAAAGGCC 1 chrX:4564137-4564257 ( 74) CAAAGTCG 1 chr2R:12457562-12457682 ( 44) CAAAGTCG 1 chr3L:16803415-16803535 ( 52) CAAAGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 2.5e-003 -1081 225 -1081 -1081 179 -1081 -1081 -1081 179 -1081 -1081 -1081 179 -1081 -1081 -1081 -1081 -1081 221 -1081 -1081 -192 -96 155 -1081 225 -1081 -1081 -1081 208 -96 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.5e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.111111 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 31.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16590477-16590597 3.56e-02 62_[+2(8.73e-05)]_50 chr3L:10534025-10534145 1.84e-02 65_[+1(4.23e-05)]_30_[+1(4.23e-05)]_\ 9 chr2L:20812629-20812749 1.52e-02 90_[+1(4.23e-05)]_22 chr3R:18146806-18146926 2.16e-02 33_[+1(4.23e-05)]_79 chr2R:15284729-15284849 3.08e-01 120 chr3R:8922705-8922825 2.97e-02 8_[+2(5.00e-05)]_104 chr3R:9381099-9381219 3.22e-02 53_[+1(4.23e-05)]_59 chr3L:2426545-2426665 9.09e-03 120 chrX:7980937-7981057 1.53e-02 31_[+1(4.23e-05)]_36_[+1(4.23e-05)]_\ 6_[+3(3.22e-05)]_23 chr3L:22421001-22421121 3.66e-02 120 chr2R:13023736-13023856 9.33e-01 120 chrX:11785157-11785277 1.55e-02 20_[+2(5.00e-05)]_[+2(5.00e-05)]_2_\ [+2(5.00e-05)]_66_[+4(3.64e-05)] chr3L:10814070-10814190 1.97e-02 56_[+2(5.00e-05)]_4_[+2(5.00e-05)]_\ 44 chrX:19485201-19485321 2.35e-02 8_[+1(7.45e-05)]_26_[+3(5.61e-05)]_\ 34_[+3(5.61e-05)]_28 chr3R:29726012-29726132 1.06e-02 62_[+2(5.00e-05)]_10_[+2(5.00e-05)]_\ 32 chr2R:15032863-15032983 6.48e-03 50_[+2(5.00e-05)]_16_[+4(3.64e-05)]_\ 38 chrX:13116515-13116635 1.70e-02 62_[+3(3.22e-05)]_50 chr3R:16334461-16334581 3.52e-02 47_[+3(3.22e-05)]_65 chrX:7973426-7973546 1.34e-02 30_[+3(3.22e-05)]_6_[+1(4.23e-05)]_\ 68 chr3R:16287319-16287439 6.64e-01 120 chr3R:11208905-11209025 6.82e-01 120 chr2R:18432720-18432840 8.54e-01 120 chr3R:26004492-26004612 7.33e-03 61_[+2(5.00e-05)]_21_[+2(5.00e-05)]_\ 22 chrX:17726115-17726235 2.25e-02 10_[+3(3.22e-05)]_13_[+1(7.45e-05)]_\ 81 chrX:17806476-17806596 2.57e-02 54_[+2(5.00e-05)]_23_[+2(5.00e-05)]_\ 27 chr3R:10592940-10593060 6.40e-03 50_[+1(4.23e-05)]_62 chr2L:7207813-7207933 8.04e-02 36_[+5(1.41e-05)]_76 chr3R:18294662-18294782 1.47e-02 120 chrX:15608863-15608983 2.72e-02 38_[+2(5.00e-05)]_74 chr2R:16154056-16154176 3.19e-03 49_[+2(5.00e-05)]_11_[+4(3.64e-05)]_\ 5_[+2(5.00e-05)]_31 chr3L:8460593-8460713 4.33e-01 120 chr3R:17019289-17019409 4.60e-03 31_[+1(7.45e-05)]_81 chr3L:11136459-11136579 2.99e-02 49_[+1(4.23e-05)]_44_[+1(4.23e-05)]_\ 11 chrX:15080051-15080171 1.78e-01 120 chr3R:21824542-21824662 2.67e-02 47_[+4(3.64e-05)]_65 chr3R:11859271-11859391 1.80e-02 36_[+4(3.64e-05)]_76 chrX:5768985-5769105 4.95e-03 16_[+1(4.23e-05)]_7_[+3(3.22e-05)]_\ 10_[+1(4.23e-05)]_63 chr3L:18057895-18058015 3.30e-02 120 chr2R:17266140-17266260 3.72e-04 85_[+4(3.64e-05)]_27 chrX:5300743-5300863 9.08e-03 46_[+2(5.00e-05)]_12_[+4(3.64e-05)]_\ 46 chr2R:15664676-15664796 2.64e-02 14_[+2(5.00e-05)]_98 chrX:13644778-13644898 5.39e-02 120 chr2R:24760537-24760657 4.16e-01 120 chr3L:9462907-9463027 6.25e-02 120 chr2R:7370396-7370516 2.82e-04 120 chr3R:24004092-24004212 5.59e-03 23_[+3(3.22e-05)]_2_[+1(7.45e-05)]_\ 10_[+1(4.23e-05)]_61 chr3R:10589362-10589482 2.12e-02 22_[+1(4.23e-05)]_90 chrX:9344240-9344360 8.77e-03 48_[+2(5.00e-05)]_33_[+2(5.00e-05)]_\ 23 chrX:13209564-13209684 5.18e-04 45_[+4(3.64e-05)]_34_[+5(2.47e-05)]_\ 25 chr3R:13524838-13524958 1.39e-02 11_[+2(5.00e-05)]_3_[+2(5.00e-05)]_\ 90 chr3L:12014397-12014517 7.84e-01 120 chr3L:18889382-18889502 3.86e-01 120 chrX:8159119-8159239 1.00e+00 120 chr2L:2802614-2802734 6.49e-01 120 chr2R:22596892-22597012 6.53e-01 120 chr2L:2823061-2823181 2.19e-05 1_[+2(5.00e-05)]_[+4(3.64e-05)]_63_\ [+1(7.45e-05)]_32 chrX:13879552-13879672 6.88e-05 82_[+3(3.22e-05)]_30 chr2L:13122701-13122821 9.33e-03 50_[+4(3.64e-05)]_40_[+2(5.00e-05)]_\ 2_[+2(8.73e-05)]_4 chrX:18866422-18866542 1.55e-02 34_[+3(3.22e-05)]_64_[+3(3.22e-05)]_\ 6 chr2L:10009580-10009700 5.86e-07 46_[+3(3.22e-05)]_15_[+2(5.00e-05)]_\ 43 chr3R:10539686-10539806 3.20e-01 120 chr3L:17631402-17631522 4.38e-01 120 chr3R:23319042-23319162 3.15e-02 81_[+2(5.00e-05)]_31 chr3R:19317473-19317593 2.35e-01 120 chr3R:30014053-30014173 7.77e-03 120 chr3R:12717063-12717183 8.86e-01 120 chrX:10932408-10932528 8.06e-03 5_[+2(5.00e-05)]_107 chr2L:19144248-19144368 1.41e-04 18_[+4(3.64e-05)]_94 chr3L:10726133-10726253 6.60e-02 7_[+1(7.45e-05)]_105 chr2L:21030381-21030501 1.85e-05 30_[+2(5.00e-05)]_66_[+1(4.23e-05)]_\ 8 chr2R:18567359-18567479 6.52e-01 120 chr2R:17439594-17439714 5.08e-01 120 chrX:6003971-6004091 2.40e-01 120 chrX:9252344-9252464 1.76e-01 120 chrX:3151276-3151396 1.21e-02 90_[+1(4.23e-05)]_[+1(4.23e-05)]_14 chr3R:11243650-11243770 2.81e-01 120 chrX:16906218-16906338 6.70e-03 [+1(4.23e-05)]_[+1(4.23e-05)]_1_\ [+1(4.23e-05)]_95 chr3R:30285110-30285230 3.97e-02 44_[+2(8.73e-05)]_68 chr3R:30289457-30289577 4.55e-03 85_[+1(4.23e-05)]_14_[+3(3.22e-05)]_\ 5 chr2R:8180493-8180613 3.16e-01 120 chr3R:25596778-25596898 9.99e-04 52_[+2(5.00e-05)]_28_[+4(3.64e-05)]_\ 24 chr2R:19617333-19617453 1.42e-03 54_[+2(5.00e-05)]_[+2(5.00e-05)]_50 chr3L:5943641-5943761 1.44e-02 72_[+3(5.61e-05)]_17_[+1(4.23e-05)]_\ 3_[+1(4.23e-05)]_4 chr3R:25529439-25529559 4.50e-03 35_[+4(3.64e-05)]_11_[+2(5.00e-05)]_\ 58 chr2R:22546073-22546193 3.41e-04 61_[+1(4.23e-05)]_7_[+3(3.22e-05)]_\ 36 chr2R:12457562-12457682 1.20e-02 43_[+5(3.91e-05)]_69 chr3R:30005448-30005568 2.58e-02 85_[+1(4.23e-05)]_27 chr2L:10794155-10794275 1.44e-03 39_[+4(3.64e-05)]_3_[+2(5.00e-05)]_\ 13_[+4(3.64e-05)]_41 chr3L:2873227-2873347 6.07e-02 120 chrX:3158752-3158872 4.78e-04 48_[+1(4.23e-05)]_17_[+1(4.23e-05)]_\ 4_[+3(3.22e-05)]_27 chr3R:10115120-10115240 8.56e-02 58_[+5(1.41e-05)]_54 chr2R:22099380-22099500 1.00e+00 120 chr2R:20580830-20580950 1.54e-02 79_[+1(7.45e-05)]_25_[+3(3.22e-05)] chrX:17488538-17488658 8.64e-03 5_[+2(5.00e-05)]_9_[+2(8.73e-05)]_\ 90 chrX:6592829-6592949 5.16e-01 120 chr2R:18314754-18314874 1.07e-01 120 chr3R:7283637-7283757 8.94e-02 120 chrX:4564137-4564257 7.11e-04 1_[+2(5.00e-05)]_4_[+2(5.00e-05)]_5_\ [+2(5.00e-05)]_39_[+5(3.91e-05)]_39 chr2R:16077944-16078064 1.49e-02 62_[+5(1.41e-05)]_50 chr3L:8775517-8775637 9.12e-03 23_[+1(7.45e-05)]_42_[+3(3.22e-05)]_\ 4_[+1(4.23e-05)]_27 chr2L:8002326-8002446 1.30e-05 71_[+2(5.00e-05)]_14_[+5(1.41e-05)]_\ 19 chr2R:20665251-20665371 1.12e-01 18_[+5(1.41e-05)]_94 chr3R:21938664-21938784 3.18e-02 92_[+1(4.23e-05)]_6_[+1(4.23e-05)]_\ 6 chr3L:18080123-18080243 1.43e-02 24_[+3(3.22e-05)]_64_[+1(4.23e-05)]_\ 4_[+1(4.23e-05)]_4 chr3L:6447852-6447972 6.68e-05 54_[+1(4.23e-05)]_58 chr3R:13309679-13309799 9.45e-01 120 chrX:18544890-18545010 2.35e-02 103_[+2(8.73e-05)]_9 chr3R:20556848-20556968 1.42e-01 120 chr3R:16206298-16206418 6.89e-01 120 chr2L:7189777-7189897 9.07e-01 120 chr3L:11442382-11442502 4.34e-01 120 chr2R:9714276-9714396 1.04e-01 120 chr2L:9945230-9945350 5.26e-01 120 chr2R:21065131-21065251 5.24e-02 29_[+3(5.61e-05)]_83 chr3R:5622188-5622308 6.53e-01 120 chr2L:2806328-2806448 7.63e-01 120 chr2R:15881657-15881777 7.88e-03 40_[+2(5.00e-05)]_72 chr2L:1617871-1617991 5.92e-01 120 chr3L:14059704-14059824 1.22e-01 120 chr2R:24584596-24584716 2.11e-02 3_[+2(5.00e-05)]_109 chr3L:14481531-14481651 1.05e-06 56_[+3(3.22e-05)]_43_[+2(5.00e-05)]_\ 5 chr2R:18291315-18291435 2.52e-02 52_[+2(5.00e-05)]_39_[+2(8.73e-05)]_\ 13 chr2L:8007341-8007461 5.30e-01 120 chr3R:20280549-20280669 7.99e-02 120 chr3R:28914232-28914352 1.49e-03 88_[+3(5.61e-05)]_24 chr3L:19055276-19055396 7.81e-01 120 chr3R:27925825-27925945 7.44e-01 120 chr2R:6148137-6148257 1.75e-01 19_[+5(1.41e-05)]_93 chr2R:15906087-15906207 1.24e-02 68_[+2(5.00e-05)]_13_[+4(3.64e-05)]_\ 5_[+2(5.00e-05)]_10 chrX:19359257-19359377 1.95e-02 60_[+2(5.00e-05)]_7_[+2(5.00e-05)]_\ 12_[+2(8.73e-05)]_17 chrX:5988223-5988343 5.28e-01 120 chrX:9139255-9139375 1.98e-01 61_[+5(1.41e-05)]_51 chrX:13406390-13406510 1.39e-02 26_[+3(3.22e-05)]_86 chrX:18699456-18699576 1.60e-01 120 chr3R:21634825-21634945 2.61e-02 95_[+1(4.23e-05)]_17 chr2R:6159889-6160009 1.79e-03 111_[+1(4.23e-05)]_1 chr3L:10942548-10942668 8.66e-01 120 chr2L:135868-135988 2.17e-01 120 chrX:18839344-18839464 2.43e-01 120 chrX:4200738-4200858 3.38e-03 83_[+2(5.00e-05)]_4_[+2(5.00e-05)]_\ 17 chr3L:8028106-8028226 1.60e-02 87_[+1(4.23e-05)]_25 chrX:19165424-19165544 1.52e-02 52_[+1(4.23e-05)]_24_[+3(3.22e-05)]_\ 28 chr2L:22756413-22756533 4.08e-01 120 chrX:13114966-13115086 1.11e-02 34_[+3(3.22e-05)]_7_[+3(3.22e-05)]_\ 63 chr2R:8655409-8655529 1.81e-02 30_[+2(5.00e-05)]_82 chr3L:20387970-20388090 9.59e-03 44_[+5(1.41e-05)]_68 chr3R:13716211-13716331 1.01e-01 52_[+1(7.45e-05)]_60 chr3L:17905860-17905980 5.90e-01 120 chr3L:12615166-12615286 2.72e-02 56_[+1(4.23e-05)]_[+1(4.23e-05)]_48 chr2L:18458722-18458842 7.92e-01 120 chr3L:83134-83254 3.46e-04 40_[+5(1.41e-05)]_56_[+3(5.61e-05)]_\ 8 chrX:7222233-7222353 6.22e-02 120 chr3L:2490821-2490941 3.80e-02 5_[+2(8.73e-05)]_107 chr3L:9551310-9551430 2.47e-04 55_[+3(3.22e-05)]_3_[+1(4.23e-05)]_\ 20_[+3(3.22e-05)]_18 chr2R:22399486-22399606 8.91e-01 120 chr2L:168457-168577 4.06e-03 39_[+1(7.45e-05)]_73 chr3L:12096954-12097074 4.33e-01 120 chrX:12675418-12675538 2.47e-02 120 chr3R:14765757-14765877 3.15e-02 28_[+1(4.23e-05)]_18_[+1(4.23e-05)]_\ 41_[+1(4.23e-05)]_9 chr2R:6166945-6167065 4.36e-01 120 chr3R:25493947-25494067 5.32e-01 120 chrX:13948935-13949055 8.57e-02 120 chrX:8592766-8592886 1.01e-06 80_[+2(5.00e-05)]_13_[+5(1.41e-05)]_\ 11 chr2R:7109469-7109589 7.78e-01 120 chr2R:19157691-19157811 1.36e-02 38_[+4(3.64e-05)]_20_[+2(5.00e-05)]_\ 46 chr2L:14997554-14997674 1.00e-02 120 chr3R:21948745-21948865 3.03e-02 120 chrX:5051233-5051353 8.55e-04 21_[+2(8.73e-05)]_91 chr2R:18879264-18879384 3.42e-03 22_[+2(8.73e-05)]_20_[+2(5.00e-05)]_\ 62 chr3L:14450660-14450780 9.17e-01 120 chr3R:11449763-11449883 5.35e-02 120 chrX:4462086-4462206 5.80e-01 120 chr3L:19021847-19021967 2.66e-03 55_[+2(8.73e-05)]_19_[+4(3.64e-05)]_\ 30 chr2R:11189260-11189380 5.57e-01 120 chr2L:3095549-3095669 2.14e-03 30_[+4(3.64e-05)]_4_[+2(5.00e-05)]_\ 2_[+2(5.00e-05)]_8_[+4(3.64e-05)]_44 chrX:20166817-20166937 2.60e-02 63_[+5(1.41e-05)]_49 chr2R:21386725-21386845 9.14e-01 120 chr2L:7466418-7466538 3.96e-02 74_[+1(7.45e-05)]_38 chr2L:7084566-7084686 2.48e-01 120 chr2L:524561-524681 5.68e-01 120 chr2L:7880568-7880688 1.25e-01 120 chr3R:4236684-4236804 3.00e-01 120 chr3L:21013594-21013714 2.08e-02 53_[+4(3.64e-05)]_59 chr3R:30357169-30357289 2.82e-01 120 chr3R:9389153-9389273 2.22e-03 30_[+5(1.41e-05)]_82 chrX:8518125-8518245 4.85e-03 10_[+1(4.23e-05)]_12_[+3(3.22e-05)]_\ 82 chr3L:16803415-16803535 1.73e-01 51_[+5(4.96e-05)]_61 chr3R:26543515-26543635 1.85e-04 [+4(3.64e-05)]_112 chrX:16723721-16723841 2.38e-04 112_[+1(7.45e-05)] chr2R:11180827-11180947 4.37e-03 28_[+2(8.73e-05)]_7_[+4(3.64e-05)]_\ 69 chr3L:736858-736978 9.99e-01 120 chr2L:7437468-7437588 7.94e-01 120 chr2L:3719765-3719885 3.27e-01 120 chr2L:8420450-8420570 2.48e-02 65_[+2(8.73e-05)]_47 chr3R:21653585-21653705 9.16e-01 120 chr3L:6155246-6155366 2.39e-02 47_[+1(4.23e-05)]_9_[+1(4.23e-05)]_\ 48 chr3R:11977102-11977222 3.48e-01 120 chr3L:11368495-11368615 4.20e-02 70_[+2(8.73e-05)]_31_[+2(8.73e-05)]_\ 3 chr3R:22539888-22540008 7.71e-01 120 chrX:6708205-6708325 1.59e-02 120 chr2L:12527741-12527861 6.00e-01 120 chr2L:5236600-5236720 2.08e-02 54_[+4(3.64e-05)]_58 chr3R:11865245-11865365 3.84e-04 67_[+1(4.23e-05)]_45 chr2R:21543350-21543470 6.08e-03 83_[+1(4.23e-05)]_29 chr2L:20916938-20917058 4.04e-02 39_[+3(5.61e-05)]_73 chrX:6803982-6804102 3.46e-01 120 chr3R:12406799-12406919 1.74e-01 81_[+5(1.41e-05)]_31 chrX:4435051-4435171 1.45e-02 4_[+2(8.73e-05)]_32_[+4(3.64e-05)]_\ 3_[+2(5.00e-05)]_30_[+2(5.00e-05)]_19 chrX:10021907-10022027 4.53e-03 27_[+3(3.22e-05)]_21_[+1(4.23e-05)]_\ 56 chr4:829967-830087 3.75e-03 56_[+3(5.61e-05)]_3_[+1(7.45e-05)]_\ 4_[+1(4.23e-05)]_[+1(4.23e-05)]_[+1(4.23e-05)]_17 chrX:6632032-6632152 3.19e-02 53_[+1(4.23e-05)]_59 chr3R:4914540-4914660 8.91e-01 120 chr3L:8360369-8360489 9.32e-05 110_[+4(3.64e-05)]_2 chr2R:18308040-18308160 3.44e-04 8_[+4(3.64e-05)]_12_[+2(5.00e-05)]_\ 2_[+2(5.00e-05)]_74 chr2L:7334250-7334370 4.37e-03 120 chr2L:20881876-20881996 8.35e-01 120 chr2L:13550834-13550954 1.33e-03 58_[+5(2.47e-05)]_8_[+3(3.22e-05)]_\ 38 chr2R:11912778-11912898 4.52e-01 120 chr3L:4178303-4178423 3.05e-02 120 chrX:17732238-17732358 4.28e-03 5_[+4(3.64e-05)]_77_[+2(5.00e-05)]_\ 22 chr2R:10057974-10058094 3.19e-05 5_[+3(3.22e-05)]_47_[+2(8.73e-05)]_\ 52 chr2R:22586982-22587102 9.88e-04 71_[+2(8.73e-05)]_41 chr3L:5141478-5141598 9.70e-01 120 chr2R:14987134-14987254 6.75e-03 59_[+2(8.73e-05)]_12_[+4(3.64e-05)]_\ 33 chr3L:4336781-4336901 3.13e-01 120 chr2R:23014940-23015060 8.88e-01 120 chrX:4671327-4671447 1.48e-02 30_[+4(3.64e-05)]_4_[+2(5.00e-05)]_\ 50_[+2(8.73e-05)]_12 chr3L:5551154-5551274 4.79e-03 44_[+4(3.64e-05)]_23_[+2(5.00e-05)]_\ 37 chr3R:23878139-23878259 9.30e-01 120 chr2L:131493-131613 4.02e-01 120 chr3R:25518103-25518223 3.30e-03 50_[+3(3.22e-05)]_62 chr3L:11557304-11557424 8.20e-01 120 chrX:6730791-6730911 6.98e-05 44_[+1(4.23e-05)]_2_[+3(3.22e-05)]_\ 58 chr3L:18038482-18038602 3.11e-02 100_[+1(4.23e-05)]_12 chr3R:8349990-8350110 1.24e-02 34_[+4(3.64e-05)]_19_[+2(5.00e-05)]_\ 51 chr2L:13665440-13665560 1.49e-02 8_[+1(4.23e-05)]_42_[+3(3.22e-05)]_\ 54 chr3L:7263875-7263995 8.04e-01 120 chr3R:4469022-4469142 9.22e-01 120 chr2R:23432173-23432293 5.59e-02 40_[+1(7.45e-05)]_72 chr3L:18783580-18783700 2.66e-03 84_[+2(8.73e-05)]_16_[+2(8.73e-05)]_\ 4 chr3L:9367603-9367723 1.81e-02 32_[+2(5.00e-05)]_22_[+2(5.00e-05)]_\ 50 chr3L:10757067-10757187 5.90e-01 120 chr2R:14027220-14027340 1.13e-04 28_[+1(4.23e-05)]_84 chr2R:23637951-23638071 1.66e-01 120 chr3L:11442583-11442703 1.49e-02 6_[+2(5.00e-05)]_106 chr2R:21389280-21389400 6.36e-01 120 chr3L:69452-69572 2.51e-03 103_[+2(5.00e-05)]_9 chr3R:13647098-13647218 9.44e-03 120 chrX:18483630-18483750 9.18e-02 120 chrX:8231772-8231892 1.40e-02 35_[+1(4.23e-05)]_6_[+1(7.45e-05)]_\ 2_[+3(3.22e-05)]_1_[+1(4.23e-05)]_44 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************