******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8924.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:6245475-6245595 1.0000 120 chrX:6366062-6366182 1.0000 120 chr2L:12493339-12493459 1.0000 120 chr3L:3042435-3042555 1.0000 120 chr2R:13560750-13560870 1.0000 120 chr2L:15913789-15913909 1.0000 120 chrX:8409614-8409734 1.0000 120 chr3L:12773515-12773635 1.0000 120 chrX:13624994-13625114 1.0000 120 chr3R:25882001-25882121 1.0000 120 chr3L:14002644-14002764 1.0000 120 chr3L:2867813-2867933 1.0000 120 chrX:4849517-4849637 1.0000 120 chr3L:10850115-10850235 1.0000 120 chr3L:1034854-1034974 1.0000 120 chrX:7706610-7706730 1.0000 120 chr3R:24320335-24320455 1.0000 120 chr3R:25074640-25074760 1.0000 120 chr3R:6368596-6368716 1.0000 120 chr2L:10403923-10404043 1.0000 120 chr3R:30563280-30563400 1.0000 120 chr3L:224722-224842 1.0000 120 chr4:70224-70344 1.0000 120 chr3R:19339325-19339445 1.0000 120 chrX:5696126-5696246 1.0000 120 chr3L:11691572-11691692 1.0000 120 chrX:17160398-17160518 1.0000 120 chr3R:24104834-24104954 1.0000 120 chr2L:8740356-8740476 1.0000 120 chr2R:14769167-14769287 1.0000 120 chr3R:26035006-26035126 1.0000 120 chr3R:11437702-11437822 1.0000 120 chr3R:11967756-11967876 1.0000 120 chr2R:17723329-17723449 1.0000 120 chr2R:21616764-21616884 1.0000 120 chr3R:8341035-8341155 1.0000 120 chr3R:18980948-18981068 1.0000 120 chr2R:9660196-9660316 1.0000 120 chr3L:10893505-10893625 1.0000 120 chr2L:10331304-10331424 1.0000 120 chrX:9693936-9694056 1.0000 120 chrX:635908-636028 1.0000 120 chr3L:2766476-2766596 1.0000 120 chrX:6700449-6700569 1.0000 120 chr3L:18820388-18820508 1.0000 120 chr4:59122-59242 1.0000 120 chr2R:9712376-9712496 1.0000 120 chr3L:19179528-19179648 1.0000 120 chr2R:11691133-11691253 1.0000 120 chr2R:6214333-6214453 1.0000 120 chrX:620080-620200 1.0000 120 chrX:21323947-21324067 1.0000 120 chr2L:9166869-9166989 1.0000 120 chrX:8437129-8437249 1.0000 120 chr2R:11198299-11198419 1.0000 120 chr3L:7156953-7157073 1.0000 120 chr3R:29723242-29723362 1.0000 120 chr4:697606-697726 1.0000 120 chrX:8444990-8445110 1.0000 120 chr3L:8525175-8525295 1.0000 120 chr3L:13022424-13022544 1.0000 120 chrX:17886516-17886636 1.0000 120 chr3R:21133991-21134111 1.0000 120 chr2R:20836362-20836482 1.0000 120 chrX:3396978-3397098 1.0000 120 chr2R:19141688-19141808 1.0000 120 chr3L:3143647-3143767 1.0000 120 chr2L:17558252-17558372 1.0000 120 chr3R:19326388-19326508 1.0000 120 chr3L:617037-617157 1.0000 120 chr3L:3788960-3789080 1.0000 120 chr3R:22587757-22587877 1.0000 120 chr2R:16322130-16322250 1.0000 120 chr2R:17781842-17781962 1.0000 120 chrX:18505292-18505412 1.0000 120 chr3L:18297515-18297635 1.0000 120 chr3R:9237897-9238017 1.0000 120 chr3R:11663621-11663741 1.0000 120 chr3R:24528029-24528149 1.0000 120 chr2L:7037990-7038110 1.0000 120 chrX:5084517-5084637 1.0000 120 chr3L:2881650-2881770 1.0000 120 chr3L:21859806-21859926 1.0000 120 chr2L:10250579-10250699 1.0000 120 chr2R:24743779-24743899 1.0000 120 chr2R:9712589-9712709 1.0000 120 chrX:5970310-5970430 1.0000 120 chr3L:4242544-4242664 1.0000 120 chr2R:20996203-20996323 1.0000 120 chr3L:4102578-4102698 1.0000 120 chrX:16275883-16276003 1.0000 120 chrX:14679276-14679396 1.0000 120 chr3L:21025345-21025465 1.0000 120 chr2R:10813470-10813590 1.0000 120 chr3R:10626182-10626302 1.0000 120 chr2L:13203451-13203571 1.0000 120 chrX:11848804-11848924 1.0000 120 chr2R:24743978-24744098 1.0000 120 chrX:18946951-18947071 1.0000 120 chrX:3719469-3719589 1.0000 120 chr3L:15321093-15321213 1.0000 120 chr3L:14776093-14776213 1.0000 120 chr3R:9809054-9809174 1.0000 120 chr2L:17747230-17747350 1.0000 120 chr2R:6653113-6653233 1.0000 120 chr2L:8080830-8080950 1.0000 120 chr3L:7936169-7936289 1.0000 120 chr2R:6632276-6632396 1.0000 120 chr2L:11338403-11338523 1.0000 120 chr3L:19928851-19928971 1.0000 120 chr4:989503-989623 1.0000 120 chr3L:20519047-20519167 1.0000 120 chr3R:7108084-7108204 1.0000 120 chr3L:9898456-9898576 1.0000 120 chr3L:12734648-12734768 1.0000 120 chr2L:155293-155413 1.0000 120 chr3L:3515766-3515886 1.0000 120 chr3L:3787860-3787980 1.0000 120 chr3L:15275630-15275750 1.0000 120 chr3L:9424623-9424743 1.0000 120 chr3L:7335133-7335253 1.0000 120 chrX:17510606-17510726 1.0000 120 chrX:17627685-17627805 1.0000 120 chr2L:19791898-19792018 1.0000 120 chr2R:22508089-22508209 1.0000 120 chr2L:10277548-10277668 1.0000 120 chr2L:4883008-4883128 1.0000 120 chrX:14234126-14234246 1.0000 120 chr2L:7494374-7494494 1.0000 120 chr2L:6479306-6479426 1.0000 120 chr3R:21420069-21420189 1.0000 120 chr3L:6885790-6885910 1.0000 120 chr3L:1167285-1167405 1.0000 120 chr2R:7381682-7381802 1.0000 120 chr3L:4614059-4614179 1.0000 120 chr2R:6675824-6675944 1.0000 120 chrX:8058474-8058594 1.0000 120 chr2L:14441049-14441169 1.0000 120 chr3R:23303428-23303548 1.0000 120 chrX:5329437-5329557 1.0000 120 chr3R:13405021-13405141 1.0000 120 chr2R:22700652-22700772 1.0000 120 chrX:9155948-9156068 1.0000 120 chr3L:17529890-17530010 1.0000 120 chr3R:16359225-16359345 1.0000 120 chr3R:27919571-27919691 1.0000 120 chr2R:14981128-14981248 1.0000 120 chr3L:18272426-18272546 1.0000 120 chr3L:14762059-14762179 1.0000 120 chr4:69524-69644 1.0000 120 chr2L:8071613-8071733 1.0000 120 chr3L:16046749-16046869 1.0000 120 chr3R:30039618-30039738 1.0000 120 chr2R:15322277-15322397 1.0000 120 chr3L:3873227-3873347 1.0000 120 chr2R:19456005-19456125 1.0000 120 chr2R:10681424-10681544 1.0000 120 chr3L:10847871-10847991 1.0000 120 chrX:9202177-9202297 1.0000 120 chr3L:19909326-19909446 1.0000 120 chr3R:6405671-6405791 1.0000 120 chr2R:13560954-13561074 1.0000 120 chr2L:11189254-11189374 1.0000 120 chr2L:22169033-22169153 1.0000 120 chr2L:7150918-7151038 1.0000 120 chr2R:16150497-16150617 1.0000 120 chr3R:29581606-29581726 1.0000 120 chr2R:14000892-14001012 1.0000 120 chr3L:1730966-1731086 1.0000 120 chr2R:23578598-23578718 1.0000 120 chr3L:16061000-16061120 1.0000 120 chr3R:6368798-6368918 1.0000 120 chr3R:31704695-31704815 1.0000 120 chr3L:1177142-1177262 1.0000 120 chr3L:10697086-10697206 1.0000 120 chr3L:8951143-8951263 1.0000 120 chr3L:4625978-4626098 1.0000 120 chr3R:25648092-25648212 1.0000 120 chr3R:24817180-24817300 1.0000 120 chr3R:22421082-22421202 1.0000 120 chr2R:18202757-18202877 1.0000 120 chr2L:15442319-15442439 1.0000 120 chr2R:9284958-9285078 1.0000 120 chr2L:10760744-10760864 1.0000 120 chr3R:20948685-20948805 1.0000 120 chr3L:12271409-12271529 1.0000 120 chr3L:17352955-17353075 1.0000 120 chr3L:18114058-18114178 1.0000 120 chr3R:21618494-21618614 1.0000 120 chr3R:9504477-9504597 1.0000 120 chr3R:15652775-15652895 1.0000 120 chr3R:17535272-17535392 1.0000 120 chr3R:17670890-17671010 1.0000 120 chr4:1060781-1060901 1.0000 120 chr2R:11640917-11641037 1.0000 120 chr3L:16640672-16640792 1.0000 120 chr3L:6189195-6189315 1.0000 120 chrX:12631701-12631821 1.0000 120 chr3R:25184155-25184275 1.0000 120 chrX:12926008-12926128 1.0000 120 chr3R:26014361-26014481 1.0000 120 chr3R:26912793-26912913 1.0000 120 chr3R:16771774-16771894 1.0000 120 chr3R:14316061-14316181 1.0000 120 chr3L:3437292-3437412 1.0000 120 chr3R:12406282-12406402 1.0000 120 chr3L:5654644-5654764 1.0000 120 chr3L:9399221-9399341 1.0000 120 chr2R:13198622-13198742 1.0000 120 chr3L:22727850-22727970 1.0000 120 chr2R:8131458-8131578 1.0000 120 chr2L:2905148-2905268 1.0000 120 chr2R:6610455-6610575 1.0000 120 chrX:19225065-19225185 1.0000 120 chr2L:6455176-6455296 1.0000 120 chr3R:20832945-20833065 1.0000 120 chr3R:5264909-5265029 1.0000 120 chrX:9899783-9899903 1.0000 120 chr2R:23697906-23698026 1.0000 120 chr3R:20555172-20555292 1.0000 120 chr3L:19910211-19910331 1.0000 120 chr3L:9028168-9028288 1.0000 120 chr3L:11833408-11833528 1.0000 120 chr2R:8045122-8045242 1.0000 120 chr3L:6157773-6157893 1.0000 120 chr3R:16837925-16838045 1.0000 120 chr3R:5217319-5217439 1.0000 120 chr2R:9842434-9842554 1.0000 120 chr3R:7091986-7092106 1.0000 120 chr3L:15592659-15592779 1.0000 120 chr3L:3983514-3983634 1.0000 120 chr3R:18906422-18906542 1.0000 120 chr2L:17588787-17588907 1.0000 120 chr2R:10077992-10078112 1.0000 120 chr3R:19628005-19628125 1.0000 120 chr2L:8554413-8554533 1.0000 120 chr2L:10543496-10543616 1.0000 120 chr3R:24050729-24050849 1.0000 120 chr3L:3450653-3450773 1.0000 120 chr3L:14172648-14172768 1.0000 120 chr3L:16853779-16853899 1.0000 120 chr2R:13923470-13923590 1.0000 120 chr2R:13558022-13558142 1.0000 120 chr3L:12124241-12124361 1.0000 120 chr3R:10378029-10378149 1.0000 120 chr3R:9052474-9052594 1.0000 120 chr2R:20587311-20587431 1.0000 120 chr3R:21493675-21493795 1.0000 120 chr3L:6981950-6982070 1.0000 120 chr3L:15787534-15787654 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8924/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8924.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.327 C 0.168 G 0.174 T 0.331 Background letter frequencies (from file dataset with add-one prior applied): A 0.327 C 0.168 G 0.174 T 0.331 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTGCNGC MEME-1 width = 8 sites = 46 llr = 403 E-value = 5.3e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3::32: pos.-specific C :9::9319 probability G a11a:27: matrix T ::6:12:: bits 2.6 * * 2.3 * * 2.1 ** * * 1.8 ** ** * Relative 1.5 ** ** * Entropy 1.3 ** ** * (12.6 bits) 1.0 ** ** ** 0.8 ** ** ** 0.5 ***** ** 0.3 ***** ** 0.0 -------- Multilevel GCTGCCGC consensus A A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5264909-5265029 27 1.39e-06 GACCTGCTCA GCTGCCGC ATTCGGAAAA chr3L:1177142-1177262 16 1.39e-06 tgctgtcttt gctgccgc ttctgtcgtt chr3L:2881650-2881770 106 1.39e-06 Agctggcagc gctgccgc tgcattg chrX:17886516-17886636 14 1.39e-06 gatagttgca gctgccgc ttatgttgtt chr3R:25648092-25648212 57 2.83e-06 CATGTAAACG GCTGCGGC TGTGTAAAAT chr3R:20832945-20833065 13 6.90e-06 ATGCAGTgca gctgcagc agcagcaaca chrX:16275883-16276003 22 6.90e-06 GACGACGAGG GCTGCAGC AAGCTGTCGA chr2R:9712589-9712709 96 6.90e-06 CGTAAAATAA GCTGCAGc acaacgcaca chr3R:29723242-29723362 60 6.90e-06 CTGCTTGCCA GCAGCCGC AGAGCTGGTT chr2R:6632276-6632396 77 9.64e-06 TGCGACCAAT GCTGCTGC GACGACGAAC chr3L:13022424-13022544 58 9.64e-06 TGTTGTTGCT GCTGCTGC CTTCTTATGT chr3L:7156953-7157073 93 9.64e-06 AACAGCGCGC GCTGCTGC GCTCTCCCGA chr3L:5654644-5654764 79 1.18e-05 TGCGTCGTGC GCAGCGGC AGCGTTTTCC chrX:9899783-9899903 68 1.52e-05 GGTGTTTAAA GCAGCAGC TCTTCAAAAC chr2R:14000892-14001012 4 1.52e-05 tca gcagcagc aacaacaaca chr2L:7037990-7038110 30 1.52e-05 CATGTGTTGG GCAGCAGC CAATCGAAAT chr3R:22587757-22587877 49 1.52e-05 GAACCGCTAA GCGGCGGC GAAACAGTCG chr3R:11967756-11967876 67 1.52e-05 TTGCTTGTCC GCAGCAGC CGTTAAGTTC chrX:8058474-8058594 55 1.79e-05 ACTGAAAGTT GCAGCTGC TCAGGCGTGC chr3R:8341035-8341155 82 1.79e-05 AACAATTTAA GCAGCTGC CAATAAAAAC chr3L:17352955-17353075 70 2.34e-05 TCGAGATAGC GCTGCCAC TATGTTTAAA chr3L:19909326-19909446 49 2.34e-05 TCACGTCATG GCTGCCAC GTCCAAGCAA chr2R:19141688-19141808 42 3.16e-05 TTTGTTTGGT GCTGTCGC GGAAATGACA chr2R:11198299-11198419 20 3.45e-05 TCGCTTGTTC GGTGCGGC GTGGCTATTA chr3L:224722-224842 10 3.45e-05 AGCAGCACA GCTGCGCC ATTGCCGTGG chr2R:7381682-7381802 30 4.22e-05 CACTAGCACC GCTGCAAC CGGTTGGCGG chr3L:7335133-7335253 44 5.69e-05 CAGCCACTTT GCTGCTAC GAAAACAACG chr2L:12493339-12493459 34 5.69e-05 GGAGAGCCGA GCTGCTAC TTAAACTATA chr2R:9712376-9712496 99 6.52e-05 ATAATACAAA GGTGCTGC CATTGGCAGC chrX:13624994-13625114 89 6.52e-05 TGAAAGAGCG GCTGTGGC Tgagggaaag chr3R:7108084-7108204 107 6.66e-05 AGAGCCAACA GCGGCCAC ATGAAT chr2R:22700652-22700772 19 7.07e-05 TGCCGTTCTA GCTGCCTC TCGCTCGCAC chr2R:24743779-24743899 77 7.07e-05 TAGCGGACTC GCGGCCCC AAGATAGAAA chr3L:9898456-9898576 90 8.14e-05 AAAATGCACT GCAGTCGC TGCGATCTGG chr3R:25882001-25882121 102 8.14e-05 ACGTTTAAGT GCAGCGAC CGCCGAAGAT chr2R:20996203-20996323 75 9.11e-05 CTTTTTATTT GCTGTTGC TGTTATAAAA chrX:12926008-12926128 75 1.18e-04 CGTGGTGCAG GCTGCAGG ACCACTTGGC chr2R:6245475-6245595 17 1.18e-04 TAAGCTTTTG GCTGCGTC GCGAGGTTTA chr3R:9052474-9052594 61 1.29e-04 GGATCGCAGC GCTGCTGG ATTTTTCAGC chr2L:8740356-8740476 102 1.29e-04 ATTCTTTACG GCAGCTCC ATTGTTTTCA chr3L:617037-617157 77 1.46e-04 GTGGAGCGGT GGGGCAGC AAAAACATAA chrX:6366062-6366182 74 1.46e-04 CATCAGCTGA GGGGCAGC AATTAAAAGA chr2R:9842434-9842554 37 1.66e-04 AACAACAATT GCTGACGC TTCGATGCAG chrX:8437129-8437249 29 1.66e-04 TAGTACGACT GCAGTAGC CAGAAGTGGT chr3L:16046749-16046869 109 1.75e-04 CGAGACGAGC GCTGCCGA AGTC chrX:9693936-9694056 46 2.01e-04 AAGGCACACC GTTGCGGC CAAAAACAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5264909-5265029 1.4e-06 26_[+1]_86 chr3L:1177142-1177262 1.4e-06 15_[+1]_97 chr3L:2881650-2881770 1.4e-06 105_[+1]_7 chrX:17886516-17886636 1.4e-06 13_[+1]_99 chr3R:25648092-25648212 2.8e-06 56_[+1]_56 chr3R:20832945-20833065 6.9e-06 12_[+1]_100 chrX:16275883-16276003 6.9e-06 21_[+1]_91 chr2R:9712589-9712709 6.9e-06 95_[+1]_17 chr3R:29723242-29723362 6.9e-06 59_[+1]_53 chr2R:6632276-6632396 9.6e-06 76_[+1]_36 chr3L:13022424-13022544 9.6e-06 57_[+1]_55 chr3L:7156953-7157073 9.6e-06 92_[+1]_20 chr3L:5654644-5654764 1.2e-05 78_[+1]_34 chrX:9899783-9899903 1.5e-05 67_[+1]_45 chr2R:14000892-14001012 1.5e-05 3_[+1]_109 chr2L:7037990-7038110 1.5e-05 29_[+1]_83 chr3R:22587757-22587877 1.5e-05 48_[+1]_64 chr3R:11967756-11967876 1.5e-05 66_[+1]_46 chrX:8058474-8058594 1.8e-05 54_[+1]_58 chr3R:8341035-8341155 1.8e-05 81_[+1]_31 chr3L:17352955-17353075 2.3e-05 69_[+1]_43 chr3L:19909326-19909446 2.3e-05 48_[+1]_64 chr2R:19141688-19141808 3.2e-05 41_[+1]_71 chr2R:11198299-11198419 3.4e-05 19_[+1]_93 chr3L:224722-224842 3.4e-05 9_[+1]_103 chr2R:7381682-7381802 4.2e-05 29_[+1]_83 chr3L:7335133-7335253 5.7e-05 43_[+1]_69 chr2L:12493339-12493459 5.7e-05 33_[+1]_79 chr2R:9712376-9712496 6.5e-05 98_[+1]_14 chrX:13624994-13625114 6.5e-05 88_[+1]_24 chr3R:7108084-7108204 6.7e-05 106_[+1]_6 chr2R:22700652-22700772 7.1e-05 18_[+1]_94 chr2R:24743779-24743899 7.1e-05 76_[+1]_36 chr3L:9898456-9898576 8.1e-05 89_[+1]_23 chr3R:25882001-25882121 8.1e-05 101_[+1]_11 chr2R:20996203-20996323 9.1e-05 74_[+1]_38 chrX:12926008-12926128 0.00012 74_[+1]_38 chr2R:6245475-6245595 0.00012 16_[+1]_96 chr3R:9052474-9052594 0.00013 60_[+1]_52 chr2L:8740356-8740476 0.00013 101_[+1]_11 chr3L:617037-617157 0.00015 76_[+1]_36 chrX:6366062-6366182 0.00015 73_[+1]_39 chr2R:9842434-9842554 0.00017 36_[+1]_76 chrX:8437129-8437249 0.00017 28_[+1]_84 chr3L:16046749-16046869 0.00018 108_[+1]_4 chrX:9693936-9694056 0.0002 45_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCNGC width=8 seqs=46 chr3R:5264909-5265029 ( 27) GCTGCCGC 1 chr3L:1177142-1177262 ( 16) GCTGCCGC 1 chr3L:2881650-2881770 ( 106) GCTGCCGC 1 chrX:17886516-17886636 ( 14) GCTGCCGC 1 chr3R:25648092-25648212 ( 57) GCTGCGGC 1 chr3R:20832945-20833065 ( 13) GCTGCAGC 1 chrX:16275883-16276003 ( 22) GCTGCAGC 1 chr2R:9712589-9712709 ( 96) GCTGCAGC 1 chr3R:29723242-29723362 ( 60) GCAGCCGC 1 chr2R:6632276-6632396 ( 77) GCTGCTGC 1 chr3L:13022424-13022544 ( 58) GCTGCTGC 1 chr3L:7156953-7157073 ( 93) GCTGCTGC 1 chr3L:5654644-5654764 ( 79) GCAGCGGC 1 chrX:9899783-9899903 ( 68) GCAGCAGC 1 chr2R:14000892-14001012 ( 4) GCAGCAGC 1 chr2L:7037990-7038110 ( 30) GCAGCAGC 1 chr3R:22587757-22587877 ( 49) GCGGCGGC 1 chr3R:11967756-11967876 ( 67) GCAGCAGC 1 chrX:8058474-8058594 ( 55) GCAGCTGC 1 chr3R:8341035-8341155 ( 82) GCAGCTGC 1 chr3L:17352955-17353075 ( 70) GCTGCCAC 1 chr3L:19909326-19909446 ( 49) GCTGCCAC 1 chr2R:19141688-19141808 ( 42) GCTGTCGC 1 chr2R:11198299-11198419 ( 20) GGTGCGGC 1 chr3L:224722-224842 ( 10) GCTGCGCC 1 chr2R:7381682-7381802 ( 30) GCTGCAAC 1 chr3L:7335133-7335253 ( 44) GCTGCTAC 1 chr2L:12493339-12493459 ( 34) GCTGCTAC 1 chr2R:9712376-9712496 ( 99) GGTGCTGC 1 chrX:13624994-13625114 ( 89) GCTGTGGC 1 chr3R:7108084-7108204 ( 107) GCGGCCAC 1 chr2R:22700652-22700772 ( 19) GCTGCCTC 1 chr2R:24743779-24743899 ( 77) GCGGCCCC 1 chr3L:9898456-9898576 ( 90) GCAGTCGC 1 chr3R:25882001-25882121 ( 102) GCAGCGAC 1 chr2R:20996203-20996323 ( 75) GCTGTTGC 1 chrX:12926008-12926128 ( 75) GCTGCAGG 1 chr2R:6245475-6245595 ( 17) GCTGCGTC 1 chr3R:9052474-9052594 ( 61) GCTGCTGG 1 chr2L:8740356-8740476 ( 102) GCAGCTCC 1 chr3L:617037-617157 ( 77) GGGGCAGC 1 chrX:6366062-6366182 ( 74) GGGGCAGC 1 chr2R:9842434-9842554 ( 37) GCTGACGC 1 chrX:8437129-8437249 ( 29) GCAGTAGC 1 chr3L:16046749-16046869 ( 109) GCTGCCGA 1 chrX:9693936-9694056 ( 46) GTTGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3254 E= 5.3e-014 -1217 -1217 252 -1217 -1217 241 -100 -392 -33 -1217 -68 93 -1217 -1217 252 -1217 -391 237 -1217 -161 -33 86 17 -47 -110 -137 209 -293 -391 247 -200 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 5.3e-014 0.000000 0.000000 1.000000 0.000000 0.000000 0.891304 0.086957 0.021739 0.260870 0.000000 0.108696 0.630435 0.000000 0.000000 1.000000 0.000000 0.021739 0.869565 0.000000 0.108696 0.260870 0.304348 0.195652 0.239130 0.152174 0.065217 0.739130 0.043478 0.021739 0.934783 0.043478 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCNGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[TA]GC[CAT]GC -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF RCRCACAC MEME-2 width = 8 sites = 25 llr = 245 E-value = 3.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:6:9:8: pos.-specific C :a:a:a:9 probability G 5:4:1:21 matrix T :::::::: bits 2.6 * * * 2.3 * * * 2.1 * * * * 1.8 * * * * Relative 1.5 * * * * Entropy 1.3 * *** * (14.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACACAC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14769167-14769287 5 2.58e-06 caac gcgcacac atacacaaaa chrX:9155948-9156068 18 7.43e-06 AAGAGAGATG GCACACAC TGCGCATGAC chr2R:22700652-22700772 1 7.43e-06 . GCACACAC TGCCGTTCTA chr3R:23303428-23303548 60 7.43e-06 TTCTCTCTGT GCACACAC CCTTatatcc chrX:8058474-8058594 16 7.43e-06 ACACTCACTG GCACACAC ACATACTAAC chr3L:4614059-4614179 33 7.43e-06 CGAGGGTCGT GCACACAC TTCTCATGTT chr2R:9712589-9712709 109 7.43e-06 GCAGcacaac gcacacac agaa chrX:21323947-21324067 21 7.43e-06 CCACACTCAT GCACACAC TCATGTTTAT chrX:6700449-6700569 25 7.43e-06 AAATACACAT GCACACAC ATTTTCATTA chr2L:6455176-6455296 4 1.23e-05 cac acgcacac gtacatgcaG chr3L:1730966-1731086 37 1.23e-05 ATATTTGCGT ACGCACAC CACCGCACGA chrX:5084517-5084637 17 1.23e-05 catgctcgac acgcacac TCCTTTCGCT chr2L:7037990-7038110 92 1.23e-05 GCCAGCACAA ACGCACAC AGTGCACGGT chr2R:18202757-18202877 82 1.36e-05 AACTGTGAAT GCGCACGC TCCGCGTTGA chr3L:12124241-12124361 1 2.28e-05 . ACACACAC ATCCACACCC chr2R:9284958-9285078 94 2.28e-05 GTACAACCCA ACACACAC GGATGTTCGA chr4:70224-70344 37 2.28e-05 GACAGTACTC ACACACAC CCTGATGTTT chr3L:224722-224842 85 2.28e-05 TGCGTGGCTG ACACACAC ATCTATATAA chr3R:25648092-25648212 30 3.19e-05 ATACACACCT ACGCACGC GTATATATAC chr3L:4242544-4242664 99 3.19e-05 TATTCAAATG GCACGCAC TGTACATAGC chr3R:16359225-16359345 104 5.00e-05 CGCGTTAGAT GCGCACAG GCACTAACG chrX:3719469-3719589 103 5.00e-05 TTCTCGTTCG CCGCACAC CGCAATTAAA chr2R:13560750-13560870 56 5.00e-05 AATTCATCAG GCGCACAG TGCGTGAAGA chr3R:5217319-5217439 93 6.25e-05 AACGCGAGCA ACGCGCGC CTTCGACATT chr3L:18820388-18820508 95 7.28e-05 AAAAAATTTC ACACGCGC CGTTTCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14769167-14769287 2.6e-06 4_[+2]_108 chrX:9155948-9156068 7.4e-06 17_[+2]_95 chr2R:22700652-22700772 7.4e-06 [+2]_112 chr3R:23303428-23303548 7.4e-06 59_[+2]_53 chrX:8058474-8058594 7.4e-06 15_[+2]_97 chr3L:4614059-4614179 7.4e-06 32_[+2]_80 chr2R:9712589-9712709 7.4e-06 108_[+2]_4 chrX:21323947-21324067 7.4e-06 20_[+2]_92 chrX:6700449-6700569 7.4e-06 24_[+2]_88 chr2L:6455176-6455296 1.2e-05 3_[+2]_109 chr3L:1730966-1731086 1.2e-05 36_[+2]_76 chrX:5084517-5084637 1.2e-05 16_[+2]_96 chr2L:7037990-7038110 1.2e-05 91_[+2]_21 chr2R:18202757-18202877 1.4e-05 81_[+2]_31 chr3L:12124241-12124361 2.3e-05 [+2]_112 chr2R:9284958-9285078 2.3e-05 93_[+2]_19 chr4:70224-70344 2.3e-05 36_[+2]_76 chr3L:224722-224842 2.3e-05 84_[+2]_28 chr3R:25648092-25648212 3.2e-05 29_[+2]_83 chr3L:4242544-4242664 3.2e-05 98_[+2]_14 chr3R:16359225-16359345 5e-05 103_[+2]_9 chrX:3719469-3719589 5e-05 102_[+2]_10 chr2R:13560750-13560870 5e-05 55_[+2]_57 chr3R:5217319-5217439 6.2e-05 92_[+2]_20 chr3L:18820388-18820508 7.3e-05 94_[+2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCRCACAC width=8 seqs=25 chr2R:14769167-14769287 ( 5) GCGCACAC 1 chrX:9155948-9156068 ( 18) GCACACAC 1 chr2R:22700652-22700772 ( 1) GCACACAC 1 chr3R:23303428-23303548 ( 60) GCACACAC 1 chrX:8058474-8058594 ( 16) GCACACAC 1 chr3L:4614059-4614179 ( 33) GCACACAC 1 chr2R:9712589-9712709 ( 109) GCACACAC 1 chrX:21323947-21324067 ( 21) GCACACAC 1 chrX:6700449-6700569 ( 25) GCACACAC 1 chr2L:6455176-6455296 ( 4) ACGCACAC 1 chr3L:1730966-1731086 ( 37) ACGCACAC 1 chrX:5084517-5084637 ( 17) ACGCACAC 1 chr2L:7037990-7038110 ( 92) ACGCACAC 1 chr2R:18202757-18202877 ( 82) GCGCACGC 1 chr3L:12124241-12124361 ( 1) ACACACAC 1 chr2R:9284958-9285078 ( 94) ACACACAC 1 chr4:70224-70344 ( 37) ACACACAC 1 chr3L:224722-224842 ( 85) ACACACAC 1 chr3R:25648092-25648212 ( 30) ACGCACGC 1 chr3L:4242544-4242664 ( 99) GCACGCAC 1 chr3R:16359225-16359345 ( 104) GCGCACAG 1 chrX:3719469-3719589 ( 103) CCGCACAC 1 chr2R:13560750-13560870 ( 56) GCGCACAG 1 chr3R:5217319-5217439 ( 93) ACGCGCGC 1 chr3L:18820388-18820508 ( 95) ACACGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 3.4e-006 43 -207 158 -1129 -1129 257 -1129 -1129 78 -1129 134 -1129 -1129 257 -1129 -1129 143 -1129 -54 -1129 -1129 257 -1129 -1129 136 -1129 -12 -1129 -1129 245 -112 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.4e-006 0.440000 0.040000 0.520000 0.000000 0.000000 1.000000 0.000000 0.000000 0.560000 0.000000 0.440000 0.000000 0.000000 1.000000 0.000000 0.000000 0.880000 0.000000 0.120000 0.000000 0.000000 1.000000 0.000000 0.000000 0.840000 0.000000 0.160000 0.000000 0.000000 0.920000 0.080000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCACAC MEME-2 regular expression -------------------------------------------------------------------------------- [GA]C[AG]CACAC -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-3 width = 8 sites = 18 llr = 188 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:::7:: pos.-specific C :::::1a8 probability G a1a:a2:2 matrix T :8:a:::: bits 2.6 * * * * 2.3 * * * * 2.1 * * * * 1.8 * * * ** Relative 1.5 * *** ** Entropy 1.3 * *** ** (15.1 bits) 1.0 * *** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGTGACC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20832945-20833065 111 5.33e-06 CCGTGTGTTT GTGTGACC TA chr3L:9399221-9399341 21 5.33e-06 GTCACATGCA GTGTGACC GTTCTTGGCT chr3R:26912793-26912913 52 5.33e-06 TGCATCTTCA GTGTGACC GTGTACGTCG chr2R:11640917-11641037 37 5.33e-06 GGGCGGGTCA GTGTGACC CTCTCGCGGT chr4:1060781-1060901 102 5.33e-06 AGGCCCAGCA GTGTGACC TTAACACGAG chr3L:3515766-3515886 12 5.33e-06 TGGCGATGTG GTGTGACC AAATTCGTGC chr2R:21616764-21616884 101 5.33e-06 ATTTAGTGTG GTGTGACC GCCGCTGGTC chr3L:1034854-1034974 32 5.33e-06 GAAACGACAA GTGTGACC AGATGCCGAA chr2L:8071613-8071733 9 8.16e-06 GGCCTACT GTGTGGCC AGATTTCATT chr3L:14776093-14776213 22 8.16e-06 AAATGTTGCA GTGTGGCC GTTTCAGCTT chr3L:5654644-5654764 58 1.37e-05 CGCGGAGTCA GTGTGACG AAGTGCGTCG chr2R:14000892-14001012 106 1.37e-05 caataacaac gtGTGACG CAGGGAT chr3R:9237897-9238017 37 1.89e-05 ACTTTCTTCA GAGTGACC ATATAATGTA chr2R:8131458-8131578 107 2.46e-05 TGCTGACGTG GTGTGGCG CGAAAC chrX:12926008-12926128 35 2.46e-05 ctcaagctAA GTGTGCCC TTTTTCGCTA chr2R:6632276-6632396 102 3.02e-05 AACGAATTGC GAGTGGCC GCTCACGGAA chr3L:2766476-2766596 106 3.02e-05 TACTGATTTG GGGTGACC AGATTCA chr2R:6245475-6245595 52 3.72e-05 TTATTAACCG GAGTGACG GCCAAGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20832945-20833065 5.3e-06 110_[+3]_2 chr3L:9399221-9399341 5.3e-06 20_[+3]_92 chr3R:26912793-26912913 5.3e-06 51_[+3]_61 chr2R:11640917-11641037 5.3e-06 36_[+3]_76 chr4:1060781-1060901 5.3e-06 101_[+3]_11 chr3L:3515766-3515886 5.3e-06 11_[+3]_101 chr2R:21616764-21616884 5.3e-06 100_[+3]_12 chr3L:1034854-1034974 5.3e-06 31_[+3]_81 chr2L:8071613-8071733 8.2e-06 8_[+3]_104 chr3L:14776093-14776213 8.2e-06 21_[+3]_91 chr3L:5654644-5654764 1.4e-05 57_[+3]_55 chr2R:14000892-14001012 1.4e-05 105_[+3]_7 chr3R:9237897-9238017 1.9e-05 36_[+3]_76 chr2R:8131458-8131578 2.5e-05 106_[+3]_6 chrX:12926008-12926128 2.5e-05 34_[+3]_78 chr2R:6632276-6632396 3e-05 101_[+3]_11 chr3L:2766476-2766596 3e-05 105_[+3]_7 chr2R:6245475-6245595 3.7e-05 51_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=18 chr3R:20832945-20833065 ( 111) GTGTGACC 1 chr3L:9399221-9399341 ( 21) GTGTGACC 1 chr3R:26912793-26912913 ( 52) GTGTGACC 1 chr2R:11640917-11641037 ( 37) GTGTGACC 1 chr4:1060781-1060901 ( 102) GTGTGACC 1 chr3L:3515766-3515886 ( 12) GTGTGACC 1 chr2R:21616764-21616884 ( 101) GTGTGACC 1 chr3L:1034854-1034974 ( 32) GTGTGACC 1 chr2L:8071613-8071733 ( 9) GTGTGGCC 1 chr3L:14776093-14776213 ( 22) GTGTGGCC 1 chr3L:5654644-5654764 ( 58) GTGTGACG 1 chr2R:14000892-14001012 ( 106) GTGTGACG 1 chr3R:9237897-9238017 ( 37) GAGTGACC 1 chr2R:8131458-8131578 ( 107) GTGTGGCG 1 chrX:12926008-12926128 ( 35) GTGTGCCC 1 chr2R:6632276-6632396 ( 102) GAGTGGCC 1 chr3L:2766476-2766596 ( 106) GGGTGACC 1 chr2R:6245475-6245595 ( 52) GAGTGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.3e-003 -1081 -1081 252 -1081 -97 -1081 -165 123 -1081 -1081 252 -1081 -1081 -1081 -1081 160 -1081 -1081 252 -1081 114 -160 35 -1081 -1081 257 -1081 -1081 -1081 221 35 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.3e-003 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.055556 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.722222 0.055556 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 regular expression -------------------------------------------------------------------------------- GTGTG[AG]C[CG] -------------------------------------------------------------------------------- Time 19.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSCCKGC MEME-4 width = 8 sites = 13 llr = 136 E-value = 5.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :22::::: pos.-specific C 984aa12a probability G 1:5::48: matrix T :::::5:: bits 2.6 ** * 2.3 ** * 2.1 * ** * 1.8 * ** ** Relative 1.5 ** ** ** Entropy 1.3 ** ** ** (15.0 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGCCTGC consensus AC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24528029-24528149 112 7.05e-07 AAGAACTCCA CCGCCGGC A chr2R:22700652-22700772 36 2.73e-06 CTCGCTCGCA CCGCCTGC CGTTCCTGGG chr3L:13022424-13022544 107 2.73e-06 CTTCAGGTGG CCGCCTGC GCTCTC chr3R:18906422-18906542 26 4.02e-06 tatctaataC CCCCCTGC AAAGAAATTA chrX:12926008-12926128 92 6.71e-06 GACCACTTGG CCACCGGC CGGCAATTGT chr2L:19791898-19792018 2 6.71e-06 A CCACCGGC CTTATTATAA chr3R:22587757-22587877 31 7.37e-06 GCGGCTAAAA CCCCCCGC GAACCGCTAA chr3R:14316061-14316181 54 9.39e-06 CAATTAATTT CCCCCGCC ATTGAAATGC chr3L:12124241-12124361 14 1.45e-05 CACACATCCA CACCCGGC TGTCTGCCCT chr3R:24050729-24050849 18 1.84e-05 AGAGTTGCCA CCCCCTCC GAAAAAGAGT chrX:620080-620200 2 1.84e-05 G CAGCCTGC CAATATGTTA chr3R:25074640-25074760 97 1.84e-05 AACATGTTTA CAGCCTGC AAGTAAATAT chr2R:6610455-6610575 63 2.37e-05 CGCGACGGAC GCGCCTGC AGAAAGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24528029-24528149 7.1e-07 111_[+4]_1 chr2R:22700652-22700772 2.7e-06 35_[+4]_77 chr3L:13022424-13022544 2.7e-06 106_[+4]_6 chr3R:18906422-18906542 4e-06 25_[+4]_87 chrX:12926008-12926128 6.7e-06 91_[+4]_21 chr2L:19791898-19792018 6.7e-06 1_[+4]_111 chr3R:22587757-22587877 7.4e-06 30_[+4]_82 chr3R:14316061-14316181 9.4e-06 53_[+4]_59 chr3L:12124241-12124361 1.5e-05 13_[+4]_99 chr3R:24050729-24050849 1.8e-05 17_[+4]_95 chrX:620080-620200 1.8e-05 1_[+4]_111 chr3R:25074640-25074760 1.8e-05 96_[+4]_16 chr2R:6610455-6610575 2.4e-05 62_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCCKGC width=8 seqs=13 chr3R:24528029-24528149 ( 112) CCGCCGGC 1 chr2R:22700652-22700772 ( 36) CCGCCTGC 1 chr3L:13022424-13022544 ( 107) CCGCCTGC 1 chr3R:18906422-18906542 ( 26) CCCCCTGC 1 chrX:12926008-12926128 ( 92) CCACCGGC 1 chr2L:19791898-19792018 ( 2) CCACCGGC 1 chr3R:22587757-22587877 ( 31) CCCCCCGC 1 chr3R:14316061-14316181 ( 54) CCCCCGCC 1 chr3L:12124241-12124361 ( 14) CACCCGGC 1 chr3R:24050729-24050849 ( 18) CCCCCTCC 1 chrX:620080-620200 ( 2) CAGCCTGC 1 chr3R:25074640-25074760 ( 97) CAGCCTGC 1 chr2R:6610455-6610575 ( 63) GCGCCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 5.7e+001 -1035 246 -118 -1035 -50 219 -1035 -1035 -109 119 141 -1035 -1035 257 -1035 -1035 -1035 257 -1035 -1035 -1035 -113 114 70 -1035 -13 228 -1035 -1035 257 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.7e+001 0.000000 0.923077 0.076923 0.000000 0.230769 0.769231 0.000000 0.000000 0.153846 0.384615 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.384615 0.538462 0.000000 0.153846 0.846154 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCKGC MEME-4 regular expression -------------------------------------------------------------------------------- C[CA][GC]CC[TG]GC -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCDGTGC MEME-5 width = 8 sites = 24 llr = 217 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::4:::: pos.-specific C 13a:3::a probability G 17:27:a: matrix T 7::3:a:: bits 2.6 * ** 2.3 * ** 2.1 * ** 1.8 * ** Relative 1.5 ** **** Entropy 1.3 ** **** (13.1 bits) 1.0 ** **** 0.8 ** **** 0.5 ** **** 0.3 *** **** 0.0 -------- Multilevel TGCAGTGC consensus C TC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20832945-20833065 4 5.33e-06 AAA TGCAGTgc agctgcagca chr3L:1167285-1167405 77 5.33e-06 AATTAAGAAA TGCAGTGC AGAGGGAAAA chr3R:24528029-24528149 45 5.33e-06 CTGTGCCCAC TGCAGTGC CAGCTTTATT chr3L:19928851-19928971 103 8.16e-06 TGTGTGTGAG TGCGGTGC CTTCCAATGC chrX:21323947-21324067 108 8.16e-06 AGTATGACCG TGCGGTGC TGTCT chr2R:6675824-6675944 45 1.36e-05 GTTTATATTT TGCTGTGC ACATATTGGT chr4:59122-59242 6 1.36e-05 ACACA TGCTGTGC TTCTACAGCT chr3R:15652775-15652895 106 2.38e-05 tTATATTTTT TCCAGTGC ATAAATA chr3R:31704695-31704815 112 2.38e-05 ATTCCTTTCT TCCAGTGC A chr2R:10813470-10813590 23 2.38e-05 TGTGTTCAAA TGCACTGC TTTCAGCACA chr2R:16322130-16322250 57 2.38e-05 CCCCGCAGCT TGCACTGC TATTGTGAAC chr3R:6405671-6405791 99 2.93e-05 TCGACTTGTC TGCGCTGC CAGTTGCTGC chr2R:9712376-9712496 18 3.20e-05 AAATCTAGTG CGCAGTGC GCTCATAGCC chr2R:6632276-6632396 62 4.39e-05 GGTTTTACGC TGCTCTGC GACCAATGCT chr2R:11198299-11198419 49 5.09e-05 TTAATTTTTC GGCGGTGC GATGAATTAA chr2L:8071613-8071733 37 5.36e-05 AACGGTAAAA TGCCGTGC GAGCAGGGAT chr2L:10277548-10277668 99 6.67e-05 TAAATGTGCT TCCACTGC ACATGCATCT chr2R:24743978-24744098 31 7.21e-05 AAGAAGAGCC AGCGGTGC TCGAAAAGAG chr2L:11338403-11338523 108 7.74e-05 GAATTTTTCC CCCAGTGC TGACC chr4:70224-70344 2 9.05e-05 A TCCTCTGC TTCGAATGCA chr3L:3042435-3042555 21 9.05e-05 AAAAGGTAAC AGCTGTGC GTTTGCATTG chr3L:12124241-12124361 83 9.58e-05 TGCCCTGGCT CGCTCTGC Atgtgtgtat chrX:11848804-11848924 45 1.25e-04 TATTTCTTAT GCCTGTGC AAGAAGAAAA chr3R:6368798-6368918 44 1.46e-04 TTTATGGAAT ACCTGTGC TCCTTAACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20832945-20833065 5.3e-06 3_[+5]_109 chr3L:1167285-1167405 5.3e-06 76_[+5]_36 chr3R:24528029-24528149 5.3e-06 44_[+5]_68 chr3L:19928851-19928971 8.2e-06 102_[+5]_10 chrX:21323947-21324067 8.2e-06 107_[+5]_5 chr2R:6675824-6675944 1.4e-05 44_[+5]_68 chr4:59122-59242 1.4e-05 5_[+5]_107 chr3R:15652775-15652895 2.4e-05 105_[+5]_7 chr3R:31704695-31704815 2.4e-05 111_[+5]_1 chr2R:10813470-10813590 2.4e-05 22_[+5]_90 chr2R:16322130-16322250 2.4e-05 56_[+5]_56 chr3R:6405671-6405791 2.9e-05 98_[+5]_14 chr2R:9712376-9712496 3.2e-05 17_[+5]_95 chr2R:6632276-6632396 4.4e-05 61_[+5]_51 chr2R:11198299-11198419 5.1e-05 48_[+5]_64 chr2L:8071613-8071733 5.4e-05 36_[+5]_76 chr2L:10277548-10277668 6.7e-05 98_[+5]_14 chr2R:24743978-24744098 7.2e-05 30_[+5]_82 chr2L:11338403-11338523 7.7e-05 107_[+5]_5 chr4:70224-70344 9e-05 1_[+5]_111 chr3L:3042435-3042555 9e-05 20_[+5]_92 chr3L:12124241-12124361 9.6e-05 82_[+5]_30 chrX:11848804-11848924 0.00012 44_[+5]_68 chr3R:6368798-6368918 0.00015 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCDGTGC width=8 seqs=24 chr3R:20832945-20833065 ( 4) TGCAGTGC 1 chr3L:1167285-1167405 ( 77) TGCAGTGC 1 chr3R:24528029-24528149 ( 45) TGCAGTGC 1 chr3L:19928851-19928971 ( 103) TGCGGTGC 1 chrX:21323947-21324067 ( 108) TGCGGTGC 1 chr2R:6675824-6675944 ( 45) TGCTGTGC 1 chr4:59122-59242 ( 6) TGCTGTGC 1 chr3R:15652775-15652895 ( 106) TCCAGTGC 1 chr3R:31704695-31704815 ( 112) TCCAGTGC 1 chr2R:10813470-10813590 ( 23) TGCACTGC 1 chr2R:16322130-16322250 ( 57) TGCACTGC 1 chr3R:6405671-6405791 ( 99) TGCGCTGC 1 chr2R:9712376-9712496 ( 18) CGCAGTGC 1 chr2R:6632276-6632396 ( 62) TGCTCTGC 1 chr2R:11198299-11198419 ( 49) GGCGGTGC 1 chr2L:8071613-8071733 ( 37) TGCCGTGC 1 chr2L:10277548-10277668 ( 99) TCCACTGC 1 chr2R:24743978-24744098 ( 31) AGCGGTGC 1 chr2L:11338403-11338523 ( 108) CCCAGTGC 1 chr4:70224-70344 ( 2) TCCTCTGC 1 chr3L:3042435-3042555 ( 21) AGCTGTGC 1 chr3L:12124241-12124361 ( 83) CGCTCTGC 1 chrX:11848804-11848924 ( 45) GCCTGTGC 1 chr3R:6368798-6368918 ( 44) ACCTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 4.3e+002 -139 -43 -106 101 -1123 79 202 -1123 -1123 257 -1123 -1123 35 -201 26 1 -1123 79 202 -1123 -1123 -1123 -1123 160 -1123 -1123 252 -1123 -1123 257 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 4.3e+002 0.125000 0.125000 0.083333 0.666667 0.000000 0.291667 0.708333 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.041667 0.208333 0.333333 0.000000 0.291667 0.708333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCDGTGC MEME-5 regular expression -------------------------------------------------------------------------------- T[GC]C[ATG][GC]TGC -------------------------------------------------------------------------------- Time 32.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6245475-6245595 1.13e-02 51_[+3(3.72e-05)]_61 chrX:6366062-6366182 6.74e-02 120 chr2L:12493339-12493459 2.02e-02 33_[+1(5.69e-05)]_79 chr3L:3042435-3042555 3.41e-02 20_[+5(9.05e-05)]_92 chr2R:13560750-13560870 3.12e-03 55_[+2(5.00e-05)]_57 chr2L:15913789-15913909 7.42e-01 120 chrX:8409614-8409734 8.88e-01 120 chr3L:12773515-12773635 2.39e-01 120 chrX:13624994-13625114 1.72e-02 88_[+1(6.52e-05)]_24 chr3R:25882001-25882121 1.71e-02 101_[+1(8.14e-05)]_11 chr3L:14002644-14002764 5.75e-01 120 chr3L:2867813-2867933 3.49e-01 120 chrX:4849517-4849637 4.87e-01 120 chr3L:10850115-10850235 7.12e-01 120 chr3L:1034854-1034974 2.72e-03 31_[+3(5.33e-06)]_81 chrX:7706610-7706730 3.36e-01 120 chr3R:24320335-24320455 8.92e-01 120 chr3R:25074640-25074760 1.04e-01 96_[+4(1.84e-05)]_16 chr3R:6368596-6368716 9.95e-01 120 chr2L:10403923-10404043 6.37e-01 120 chr3R:30563280-30563400 1.39e-02 120 chr3L:224722-224842 4.60e-04 9_[+1(3.45e-05)]_67_[+2(2.28e-05)]_\ 28 chr4:70224-70344 3.27e-04 1_[+5(9.05e-05)]_27_[+2(2.28e-05)]_\ 76 chr3R:19339325-19339445 8.98e-01 120 chrX:5696126-5696246 5.61e-01 120 chr3L:11691572-11691692 2.86e-02 120 chrX:17160398-17160518 9.76e-02 120 chr3R:24104834-24104954 3.66e-01 120 chr2L:8740356-8740476 1.11e-01 120 chr2R:14769167-14769287 4.59e-04 4_[+2(2.58e-06)]_10_[+2(2.28e-05)]_\ 90 chr3R:26035006-26035126 1.88e-01 120 chr3R:11437702-11437822 6.72e-01 120 chr3R:11967756-11967876 7.92e-03 66_[+1(1.52e-05)]_46 chr2R:17723329-17723449 7.07e-01 120 chr2R:21616764-21616884 8.82e-05 100_[+3(5.33e-06)]_12 chr3R:8341035-8341155 9.32e-03 81_[+1(1.79e-05)]_31 chr3R:18980948-18981068 2.62e-01 120 chr2R:9660196-9660316 9.70e-01 120 chr3L:10893505-10893625 9.69e-01 120 chr2L:10331304-10331424 8.61e-01 120 chrX:9693936-9694056 4.94e-03 120 chrX:635908-636028 8.47e-01 120 chr3L:2766476-2766596 4.23e-02 105_[+3(3.02e-05)]_7 chrX:6700449-6700569 3.20e-02 24_[+2(7.43e-06)]_88 chr3L:18820388-18820508 2.39e-03 94_[+2(7.28e-05)]_18 chr4:59122-59242 8.94e-03 5_[+5(1.36e-05)]_107 chr2R:9712376-9712496 1.52e-03 17_[+5(3.20e-05)]_73_[+1(6.52e-05)]_\ 14 chr3L:19179528-19179648 7.03e-01 120 chr2R:11691133-11691253 7.18e-01 120 chr2R:6214333-6214453 1.02e-01 120 chrX:620080-620200 1.61e-02 1_[+4(1.84e-05)]_111 chrX:21323947-21324067 1.12e-06 20_[+2(7.43e-06)]_79_[+5(8.16e-06)]_\ 5 chr2L:9166869-9166989 5.66e-01 120 chrX:8437129-8437249 1.61e-02 120 chr2R:11198299-11198419 5.66e-04 19_[+1(3.45e-05)]_21_[+5(5.09e-05)]_\ 64 chr3L:7156953-7157073 2.48e-05 92_[+1(9.64e-06)]_20 chr3R:29723242-29723362 2.00e-04 59_[+1(6.90e-06)]_53 chr4:697606-697726 7.04e-02 120 chrX:8444990-8445110 9.99e-01 120 chr3L:8525175-8525295 1.54e-01 120 chr3L:13022424-13022544 8.15e-06 54_[+1(9.64e-06)]_44_[+4(2.73e-06)]_\ 6 chrX:17886516-17886636 3.09e-03 13_[+1(1.39e-06)]_10_[+1(9.11e-05)]_\ 81 chr3R:21133991-21134111 1.00e+00 120 chr2R:20836362-20836482 4.46e-01 120 chrX:3396978-3397098 8.86e-01 120 chr2R:19141688-19141808 7.08e-03 41_[+1(3.16e-05)]_71 chr3L:3143647-3143767 9.97e-01 120 chr2L:17558252-17558372 7.24e-01 120 chr3R:19326388-19326508 5.95e-01 120 chr3L:617037-617157 2.40e-02 120 chr3L:3788960-3789080 9.99e-01 120 chr3R:22587757-22587877 1.09e-04 30_[+4(7.37e-06)]_10_[+1(1.52e-05)]_\ 64 chr2R:16322130-16322250 2.70e-03 56_[+5(2.38e-05)]_33_[+5(2.38e-05)]_\ 15 chr2R:17781842-17781962 3.08e-01 120 chrX:18505292-18505412 4.40e-01 120 chr3L:18297515-18297635 9.07e-01 120 chr3R:9237897-9238017 7.90e-02 36_[+3(1.89e-05)]_76 chr3R:11663621-11663741 7.69e-01 120 chr3R:24528029-24528149 2.57e-07 32_[+5(6.67e-05)]_4_[+5(5.33e-06)]_\ 59_[+4(7.05e-07)]_1 chr2L:7037990-7038110 3.85e-05 29_[+1(1.52e-05)]_54_[+2(1.23e-05)]_\ 21 chrX:5084517-5084637 3.46e-04 16_[+2(1.23e-05)]_96 chr3L:2881650-2881770 4.34e-05 105_[+1(1.39e-06)]_7 chr3L:21859806-21859926 1.00e+00 120 chr2L:10250579-10250699 7.63e-01 120 chr2R:24743779-24743899 2.35e-02 76_[+1(7.07e-05)]_36 chr2R:9712589-9712709 4.50e-04 95_[+1(6.90e-06)]_5_[+2(7.43e-06)]_\ 4 chrX:5970310-5970430 1.78e-01 120 chr3L:4242544-4242664 4.92e-02 98_[+2(3.19e-05)]_14 chr2R:20996203-20996323 1.03e-01 74_[+1(9.11e-05)]_38 chr3L:4102578-4102698 4.69e-02 120 chrX:16275883-16276003 5.73e-03 21_[+1(6.90e-06)]_91 chrX:14679276-14679396 9.76e-01 120 chr3L:21025345-21025465 9.36e-01 120 chr2R:10813470-10813590 2.47e-02 22_[+5(2.38e-05)]_90 chr3R:10626182-10626302 4.21e-01 120 chr2L:13203451-13203571 5.12e-01 120 chrX:11848804-11848924 4.45e-01 120 chr2R:24743978-24744098 4.04e-04 30_[+5(7.21e-05)]_82 chrX:18946951-18947071 1.00e+00 120 chrX:3719469-3719589 4.56e-02 102_[+2(5.00e-05)]_10 chr3L:15321093-15321213 9.62e-01 120 chr3L:14776093-14776213 7.06e-03 21_[+3(8.16e-06)]_91 chr3R:9809054-9809174 7.75e-03 120 chr2L:17747230-17747350 9.96e-01 120 chr2R:6653113-6653233 4.23e-02 120 chr2L:8080830-8080950 8.42e-01 120 chr3L:7936169-7936289 9.93e-01 120 chr2R:6632276-6632396 7.60e-06 61_[+5(4.39e-05)]_7_[+1(9.64e-06)]_\ 17_[+3(3.02e-05)]_11 chr2L:11338403-11338523 2.14e-01 107_[+5(7.74e-05)]_5 chr3L:19928851-19928971 1.83e-03 102_[+5(8.16e-06)]_10 chr4:989503-989623 1.51e-01 120 chr3L:20519047-20519167 1.74e-01 120 chr3R:7108084-7108204 5.20e-02 106_[+1(6.66e-05)]_6 chr3L:9898456-9898576 1.42e-03 83_[+5(2.38e-05)]_29 chr3L:12734648-12734768 8.48e-01 120 chr2L:155293-155413 3.86e-01 120 chr3L:3515766-3515886 1.76e-03 11_[+3(5.33e-06)]_101 chr3L:3787860-3787980 1.97e-01 120 chr3L:15275630-15275750 7.32e-01 120 chr3L:9424623-9424743 9.28e-01 120 chr3L:7335133-7335253 3.14e-02 43_[+1(5.69e-05)]_69 chrX:17510606-17510726 9.03e-01 120 chrX:17627685-17627805 8.67e-01 120 chr2L:19791898-19792018 1.32e-03 1_[+4(6.71e-06)]_111 chr2R:22508089-22508209 8.56e-01 120 chr2L:10277548-10277668 2.33e-02 98_[+5(6.67e-05)]_14 chr2L:4883008-4883128 9.92e-01 120 chrX:14234126-14234246 9.92e-01 120 chr2L:7494374-7494494 9.61e-01 120 chr2L:6479306-6479426 1.71e-01 120 chr3R:21420069-21420189 9.34e-01 120 chr3L:6885790-6885910 1.00e+00 120 chr3L:1167285-1167405 5.48e-03 76_[+5(5.33e-06)]_36 chr2R:7381682-7381802 7.36e-04 29_[+1(4.22e-05)]_83 chr3L:4614059-4614179 8.25e-04 32_[+2(7.43e-06)]_80 chr2R:6675824-6675944 2.03e-03 44_[+5(1.36e-05)]_68 chrX:8058474-8058594 2.42e-04 15_[+2(7.43e-06)]_8_[+2(3.19e-05)]_\ 15_[+1(1.79e-05)]_58 chr2L:14441049-14441169 3.48e-01 120 chr3R:23303428-23303548 7.06e-03 59_[+2(7.43e-06)]_53 chrX:5329437-5329557 4.24e-01 120 chr3R:13405021-13405141 6.68e-01 120 chr2R:22700652-22700772 2.13e-06 [+2(7.43e-06)]_10_[+1(7.07e-05)]_9_\ [+4(2.73e-06)]_77 chrX:9155948-9156068 3.37e-03 17_[+2(7.43e-06)]_61_[+2(2.28e-05)]_\ 26 chr3L:17529890-17530010 9.43e-01 120 chr3R:16359225-16359345 3.91e-02 103_[+2(5.00e-05)]_9 chr3R:27919571-27919691 8.26e-01 120 chr2R:14981128-14981248 6.52e-01 120 chr3L:18272426-18272546 5.05e-01 120 chr3L:14762059-14762179 5.46e-02 120 chr4:69524-69644 4.62e-02 120 chr2L:8071613-8071733 5.61e-05 8_[+3(8.16e-06)]_20_[+5(5.36e-05)]_\ 76 chr3L:16046749-16046869 6.26e-03 120 chr3R:30039618-30039738 1.09e-02 83_[+2(9.80e-05)]_29 chr2R:15322277-15322397 9.66e-01 120 chr3L:3873227-3873347 9.05e-01 120 chr2R:19456005-19456125 1.96e-01 120 chr2R:10681424-10681544 6.46e-01 120 chr3L:10847871-10847991 1.00e+00 120 chrX:9202177-9202297 1.00e+00 120 chr3L:19909326-19909446 2.36e-02 48_[+1(2.34e-05)]_64 chr3R:6405671-6405791 2.24e-03 98_[+5(2.93e-05)]_14 chr2R:13560954-13561074 2.59e-02 120 chr2L:11189254-11189374 9.48e-01 120 chr2L:22169033-22169153 3.37e-01 120 chr2L:7150918-7151038 3.73e-01 120 chr2R:16150497-16150617 1.66e-02 120 chr3R:29581606-29581726 9.70e-01 120 chr2R:14000892-14001012 5.20e-04 3_[+1(1.52e-05)]_19_[+1(1.93e-05)]_\ 67_[+3(1.37e-05)]_7 chr3L:1730966-1731086 2.21e-02 36_[+2(1.23e-05)]_76 chr2R:23578598-23578718 9.32e-01 120 chr3L:16061000-16061120 9.63e-01 120 chr3R:6368798-6368918 2.52e-01 120 chr3R:31704695-31704815 2.12e-01 111_[+5(2.38e-05)]_1 chr3L:1177142-1177262 6.73e-05 15_[+1(1.39e-06)]_97 chr3L:10697086-10697206 9.95e-01 120 chr3L:8951143-8951263 1.00e+00 120 chr3L:4625978-4626098 8.22e-02 120 chr3R:25648092-25648212 2.09e-04 29_[+2(3.19e-05)]_19_[+1(2.83e-06)]_\ 56 chr3R:24817180-24817300 9.68e-01 120 chr3R:22421082-22421202 4.82e-02 120 chr2R:18202757-18202877 5.47e-03 81_[+2(1.36e-05)]_31 chr2L:15442319-15442439 9.81e-01 120 chr2R:9284958-9285078 6.87e-03 93_[+2(2.28e-05)]_19 chr2L:10760744-10760864 1.00e+00 120 chr3R:20948685-20948805 5.58e-01 120 chr3L:12271409-12271529 9.93e-01 120 chr3L:17352955-17353075 3.76e-03 69_[+1(2.34e-05)]_43 chr3L:18114058-18114178 8.89e-01 120 chr3R:21618494-21618614 1.78e-01 120 chr3R:9504477-9504597 9.66e-01 120 chr3R:15652775-15652895 2.74e-01 105_[+5(2.38e-05)]_7 chr3R:17535272-17535392 1.00e+00 120 chr3R:17670890-17671010 2.10e-01 120 chr4:1060781-1060901 1.17e-02 101_[+3(5.33e-06)]_11 chr2R:11640917-11641037 1.73e-03 7_[+3(7.46e-05)]_21_[+3(5.33e-06)]_\ 76 chr3L:16640672-16640792 1.51e-01 120 chr3L:6189195-6189315 9.97e-01 120 chrX:12631701-12631821 1.74e-01 120 chr3R:25184155-25184275 9.99e-01 120 chrX:12926008-12926128 1.74e-05 34_[+3(2.46e-05)]_49_[+4(6.71e-06)]_\ 21 chr3R:26014361-26014481 4.39e-01 120 chr3R:26912793-26912913 6.36e-03 51_[+3(5.33e-06)]_61 chr3R:16771774-16771894 7.22e-01 120 chr3R:14316061-14316181 1.40e-02 53_[+4(9.39e-06)]_59 chr3L:3437292-3437412 1.00e+00 120 chr3R:12406282-12406402 9.99e-01 120 chr3L:5654644-5654764 1.63e-05 15_[+1(3.16e-05)]_34_[+3(1.37e-05)]_\ 13_[+1(1.18e-05)]_34 chr3L:9399221-9399341 2.15e-03 20_[+3(5.33e-06)]_92 chr2R:13198622-13198742 9.98e-01 120 chr3L:22727850-22727970 7.36e-01 120 chr2R:8131458-8131578 2.05e-02 106_[+3(2.46e-05)]_6 chr2L:2905148-2905268 1.00e+00 120 chr2R:6610455-6610575 2.57e-03 62_[+4(2.37e-05)]_50 chrX:19225065-19225185 1.00e+00 120 chr2L:6455176-6455296 2.30e-03 3_[+2(1.23e-05)]_109 chr3R:20832945-20833065 3.54e-07 3_[+5(5.33e-06)]_1_[+1(6.90e-06)]_1_\ [+1(9.90e-05)]_81_[+3(5.33e-06)]_2 chr3R:5264909-5265029 1.84e-05 26_[+1(1.39e-06)]_86 chrX:9899783-9899903 9.59e-02 67_[+1(1.52e-05)]_45 chr2R:23697906-23698026 6.70e-01 120 chr3R:20555172-20555292 2.77e-01 120 chr3L:19910211-19910331 9.84e-02 120 chr3L:9028168-9028288 9.80e-01 120 chr3L:11833408-11833528 6.12e-02 120 chr2R:8045122-8045242 9.99e-01 120 chr3L:6157773-6157893 9.39e-01 120 chr3R:16837925-16838045 1.00e+00 120 chr3R:5217319-5217439 4.09e-02 92_[+2(6.25e-05)]_20 chr2R:9842434-9842554 2.42e-01 120 chr3R:7091986-7092106 5.51e-01 120 chr3L:15592659-15592779 1.00e+00 120 chr3L:3983514-3983634 8.98e-01 120 chr3R:18906422-18906542 7.86e-04 25_[+4(4.02e-06)]_87 chr2L:17588787-17588907 9.99e-01 120 chr2R:10077992-10078112 6.20e-01 120 chr3R:19628005-19628125 8.78e-01 120 chr2L:8554413-8554533 9.83e-01 120 chr2L:10543496-10543616 9.87e-01 120 chr3R:24050729-24050849 4.32e-03 17_[+4(1.84e-05)]_95 chr3L:3450653-3450773 6.82e-01 120 chr3L:14172648-14172768 5.20e-01 120 chr3L:16853779-16853899 2.38e-01 120 chr2R:13923470-13923590 9.95e-01 120 chr2R:13558022-13558142 1.37e-01 120 chr3L:12124241-12124361 2.06e-06 [+2(2.28e-05)]_5_[+4(1.45e-05)]_28_\ [+2(4.00e-05)]_25_[+5(9.58e-05)]_30 chr3R:10378029-10378149 2.65e-01 120 chr3R:9052474-9052594 8.78e-04 120 chr2R:20587311-20587431 8.34e-01 120 chr3R:21493675-21493795 1.00e+00 120 chr3L:6981950-6982070 1.00e+00 120 chr3L:15787534-15787654 7.94e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************