******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8632.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30295025-30295145 1.0000 120 chr3L:12915615-12915735 1.0000 120 chr2R:7531312-7531432 1.0000 120 chrX:16873151-16873271 1.0000 120 chrX:17493769-17493889 1.0000 120 chrX:18256379-18256499 1.0000 120 chr3L:18137347-18137467 1.0000 120 chr3L:16174864-16174984 1.0000 120 chrX:342577-342697 1.0000 120 chr3L:20990368-20990488 1.0000 120 chr3L:12016331-12016451 1.0000 120 chr2R:12646917-12647037 1.0000 120 chr3R:30295228-30295348 1.0000 120 chrX:17113428-17113548 1.0000 120 chr2L:11052518-11052638 1.0000 120 chr2R:19968844-19968964 1.0000 120 chr2L:6508845-6508965 1.0000 120 chrX:17542883-17543003 1.0000 120 chr2R:21474651-21474771 1.0000 120 chr3R:30256370-30256490 1.0000 120 chr3R:17202460-17202580 1.0000 120 chr3R:21823178-21823298 1.0000 120 chr3R:13215210-13215330 1.0000 120 chr3R:23496673-23496793 1.0000 120 chr2R:19149892-19150012 1.0000 120 chrX:3867181-3867301 1.0000 120 chr2L:18482211-18482331 1.0000 120 chr3L:6270416-6270536 1.0000 120 chr3R:31688795-31688915 1.0000 120 chr3L:16183231-16183351 1.0000 120 chrX:18540355-18540475 1.0000 120 chrX:11658566-11658686 1.0000 120 chr2R:18304620-18304740 1.0000 120 chr2R:14923058-14923178 1.0000 120 chr3R:18157619-18157739 1.0000 120 chr3L:6085248-6085368 1.0000 120 chr3R:21931460-21931580 1.0000 120 chr3L:10942663-10942783 1.0000 120 chr3R:25759614-25759734 1.0000 120 chr2L:18468145-18468265 1.0000 120 chr3L:10968787-10968907 1.0000 120 chr3R:30843214-30843334 1.0000 120 chr3R:21649601-21649721 1.0000 120 chr3R:14691544-14691664 1.0000 120 chr2R:20646221-20646341 1.0000 120 chr2L:14995185-14995305 1.0000 120 chr3R:14421943-14422063 1.0000 120 chr2L:16406630-16406750 1.0000 120 chr3L:16212072-16212192 1.0000 120 chr3R:13934757-13934877 1.0000 120 chr2L:7199716-7199836 1.0000 120 chr3R:22424179-22424299 1.0000 120 chr3L:15174258-15174378 1.0000 120 chr2L:17421488-17421608 1.0000 120 chr2L:5429291-5429411 1.0000 120 chr3L:15209180-15209300 1.0000 120 chrX:17181731-17181851 1.0000 120 chr3L:10757058-10757178 1.0000 120 chr3L:16168151-16168271 1.0000 120 chr2L:17750267-17750387 1.0000 120 chrX:14897728-14897848 1.0000 120 chr3R:6106792-6106912 1.0000 120 chr3R:26429776-26429896 1.0000 120 chr3R:14711573-14711693 1.0000 120 chr3R:6343668-6343788 1.0000 120 chr3R:24906101-24906221 1.0000 120 chr3R:30461656-30461776 1.0000 120 chr3L:12275810-12275930 1.0000 120 chr2R:13478493-13478613 1.0000 120 chr2R:10772048-10772168 1.0000 120 chr2R:18610526-18610646 1.0000 120 chr3L:21080582-21080702 1.0000 120 chr2R:19985108-19985228 1.0000 120 chr3L:11374013-11374133 1.0000 120 chr3R:26968150-26968270 1.0000 120 chrX:367052-367172 1.0000 120 chrX:12000355-12000475 1.0000 120 chr2L:2944627-2944747 1.0000 120 chr3L:17007030-17007150 1.0000 120 chr3R:31991893-31992013 1.0000 120 chr3L:6269118-6269238 1.0000 120 chr3L:19055191-19055311 1.0000 120 chr3R:16154405-16154525 1.0000 120 chr3L:5128351-5128471 1.0000 120 chr2L:16537146-16537266 1.0000 120 chr2R:14969714-14969834 1.0000 120 chrX:13307276-13307396 1.0000 120 chr3L:10928063-10928183 1.0000 120 chr2R:21569779-21569899 1.0000 120 chr2R:21495562-21495682 1.0000 120 chr2L:13893692-13893812 1.0000 120 chr2L:5289994-5290114 1.0000 120 chr3R:29758526-29758646 1.0000 120 chr3R:8712839-8712959 1.0000 120 chr3R:14498202-14498322 1.0000 120 chr3L:14610567-14610687 1.0000 120 chr3R:14048895-14049015 1.0000 120 chrX:10104625-10104745 1.0000 120 chr3L:11467148-11467268 1.0000 120 chrX:4175940-4176060 1.0000 120 chr3R:8969000-8969120 1.0000 120 chr3R:9913578-9913698 1.0000 120 chr3L:10786194-10786314 1.0000 120 chr2R:16812241-16812361 1.0000 120 chr2L:18694823-18694943 1.0000 120 chr3L:21060581-21060701 1.0000 120 chr3L:1064554-1064674 1.0000 120 chr3R:24614263-24614383 1.0000 120 chrX:19878925-19879045 1.0000 120 chrX:2788746-2788866 1.0000 120 chr2R:17136117-17136237 1.0000 120 chr3L:9551306-9551426 1.0000 120 chr2R:21470553-21470673 1.0000 120 chr3L:6458890-6459010 1.0000 120 chr3L:10352243-10352363 1.0000 120 chr3L:531412-531532 1.0000 120 chr3R:25461832-25461952 1.0000 120 chr3L:1374588-1374708 1.0000 120 chrX:22479474-22479594 1.0000 120 chr2L:2432928-2433048 1.0000 120 chr2L:4348694-4348814 1.0000 120 chr3L:16762266-16762386 1.0000 120 chr2R:9674794-9674914 1.0000 120 chr3L:13212991-13213111 1.0000 120 chrX:18256673-18256793 1.0000 120 chr2L:18466372-18466492 1.0000 120 chr3L:10562406-10562526 1.0000 120 chr2L:847310-847430 1.0000 120 chrX:10718030-10718150 1.0000 120 chr3L:14611476-14611596 1.0000 120 chr3L:14463955-14464075 1.0000 120 chr2L:9231862-9231982 1.0000 120 chrX:17879408-17879528 1.0000 120 chr3L:17506122-17506242 1.0000 120 chrX:6022257-6022377 1.0000 120 chr2L:18003127-18003247 1.0000 120 chrX:1826266-1826386 1.0000 120 chr2R:6147732-6147852 1.0000 120 chrX:740005-740125 1.0000 120 chr3L:18198788-18198908 1.0000 120 chr3L:8157193-8157313 1.0000 120 chr3L:16015946-16016066 1.0000 120 chrX:768064-768184 1.0000 120 chr2R:21543351-21543471 1.0000 120 chr3L:11322584-11322704 1.0000 120 chr2L:12823708-12823828 1.0000 120 chr2R:19153425-19153545 1.0000 120 chr2L:18482411-18482531 1.0000 120 chrX:13245901-13246021 1.0000 120 chr3L:15258551-15258671 1.0000 120 chr2L:20956839-20956959 1.0000 120 chr3R:10530708-10530828 1.0000 120 chr3R:8029769-8029889 1.0000 120 chr2R:10213720-10213840 1.0000 120 chrX:12663091-12663211 1.0000 120 chr3R:22194825-22194945 1.0000 120 chrX:18929603-18929723 1.0000 120 chr2R:14975276-14975396 1.0000 120 chrX:13679699-13679819 1.0000 120 chr3R:30284075-30284195 1.0000 120 chr3L:10697210-10697330 1.0000 120 chr2L:12602266-12602386 1.0000 120 chrX:18272538-18272658 1.0000 120 chr3R:10455071-10455191 1.0000 120 chr3R:23508436-23508556 1.0000 120 chr3L:8027785-8027905 1.0000 120 chr3L:21042744-21042864 1.0000 120 chr2R:10600491-10600611 1.0000 120 chrX:8491629-8491749 1.0000 120 chr3R:29778203-29778323 1.0000 120 chr2L:4211427-4211547 1.0000 120 chrX:6059287-6059407 1.0000 120 chr3L:8701791-8701911 1.0000 120 chrX:19160039-19160159 1.0000 120 chr2R:14513689-14513809 1.0000 120 chr3L:818515-818635 1.0000 120 chr2R:18894908-18895028 1.0000 120 chr3R:31680021-31680141 1.0000 120 chr3L:2866948-2867068 1.0000 120 chr2R:19969821-19969941 1.0000 120 chr2R:7093026-7093146 1.0000 120 chr2R:8322872-8322992 1.0000 120 chr3R:13941555-13941675 1.0000 120 chr3L:2835118-2835238 1.0000 120 chr3L:19557370-19557490 1.0000 120 chr2L:19364755-19364875 1.0000 120 chr2R:18926657-18926777 1.0000 120 chrX:4197594-4197714 1.0000 120 chr2R:8650610-8650730 1.0000 120 chr2R:18209781-18209901 1.0000 120 chr2R:19620106-19620226 1.0000 120 chr3L:16204231-16204351 1.0000 120 chrX:14074292-14074412 1.0000 120 chr2L:3781593-3781713 1.0000 120 chrX:6077121-6077241 1.0000 120 chrX:1612014-1612134 1.0000 120 chrX:8215570-8215690 1.0000 120 chr3R:30076200-30076320 1.0000 120 chr2R:14126166-14126286 1.0000 120 chr3R:31762816-31762936 1.0000 120 chr2R:14782986-14783106 1.0000 120 chr2L:15385571-15385691 1.0000 120 chr3R:22185830-22185950 1.0000 120 chr2L:15392479-15392599 1.0000 120 chr3L:21253045-21253165 1.0000 120 chr3L:4722002-4722122 1.0000 120 chr3L:16286384-16286504 1.0000 120 chr2L:2857851-2857971 1.0000 120 chrX:2365551-2365671 1.0000 120 chrX:5897206-5897326 1.0000 120 chr3L:16211220-16211340 1.0000 120 chr2L:18341077-18341197 1.0000 120 chrX:7544024-7544144 1.0000 120 chrX:6344396-6344516 1.0000 120 chr2L:18146786-18146906 1.0000 120 chr2R:13474985-13475105 1.0000 120 chr2R:24163435-24163555 1.0000 120 chrX:21375792-21375912 1.0000 120 chr2L:12513969-12514089 1.0000 120 chr2L:13572079-13572199 1.0000 120 chrX:17237497-17237617 1.0000 120 chrX:19225044-19225164 1.0000 120 chrX:13302646-13302766 1.0000 120 chr2L:18372193-18372313 1.0000 120 chrX:3380317-3380437 1.0000 120 chr3L:3343413-3343533 1.0000 120 chr3L:4545818-4545938 1.0000 120 chr2L:4056915-4057035 1.0000 120 chrX:4322835-4322955 1.0000 120 chr3R:23486857-23486977 1.0000 120 chrX:7491048-7491168 1.0000 120 chrX:5923297-5923417 1.0000 120 chr3R:14765503-14765623 1.0000 120 chrX:6984063-6984183 1.0000 120 chr3L:12102257-12102377 1.0000 120 chrX:17562755-17562875 1.0000 120 chr2L:18523138-18523258 1.0000 120 chr3L:7149893-7150013 1.0000 120 chrX:2334710-2334830 1.0000 120 chrX:17490005-17490125 1.0000 120 chr3L:15762877-15762997 1.0000 120 chr2R:21569037-21569157 1.0000 120 chr2R:16156409-16156529 1.0000 120 chr2R:22570726-22570846 1.0000 120 chr2L:18353004-18353124 1.0000 120 chr3R:14430437-14430557 1.0000 120 chr3R:27140106-27140226 1.0000 120 chrX:6339154-6339274 1.0000 120 chr3R:31225141-31225261 1.0000 120 chr3R:22324867-22324987 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8632/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8632.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.361 C 0.144 G 0.142 T 0.353 Background letter frequencies (from file dataset with add-one prior applied): A 0.361 C 0.144 G 0.142 T 0.353 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCDVWGCA MEME-1 width = 8 sites = 45 llr = 372 E-value = 2.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::344::6 pos.-specific C :9:3::71 probability G a1441a33 matrix T ::2:4::: bits 2.8 * 2.5 ** * 2.3 ** * 2.0 ** ** Relative 1.7 ** ** Entropy 1.4 ** ** (11.9 bits) 1.1 ** ** 0.8 ** * ** 0.6 ** * *** 0.3 ******** 0.0 -------- Multilevel GCGGAGCA consensus AAT GG sequence TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:740005-740125 102 4.50e-06 TAGCGAAAAA GCGGGGCA TTTGCCATTC chrX:2334710-2334830 45 6.87e-06 TGCAGCGAAT GCGCAGCA CGTGGACTGC chrX:14074292-14074412 68 6.87e-06 TACTTTCTAA GCGCAGCA TTCAGATCTT chr2R:14126166-14126286 1 8.18e-06 . GCGGAGCC TTCGCCGATT chrX:17181731-17181851 35 1.14e-05 TAAATAAATG GCGATGCG TGATATCTCA chr3R:10530708-10530828 67 2.27e-05 TTCTCACAAA GCAGAGCG TATAGCTTAT chr3R:14691544-14691664 45 2.27e-05 TAGTAGAAAA GCGAAGCA AGTAAACTGT chr2R:19153425-19153545 96 3.33e-05 GGATTTTCTC GCAGTGCA GGCACGGCAG chr2R:21543351-21543471 30 3.33e-05 AAGAGAGACG GCGAGGCA CTCTCCGTAT chr3R:29758526-29758646 113 3.33e-05 TAAAGTTCTC GCAGTGCA chr2R:16156409-16156529 35 4.48e-05 AGTATGAGCT GCTGAGCA CATAAACTAA chr2R:19969821-19969941 38 4.48e-05 TCATTCTTTC GCTGTGCA AAATGTATAT chr3L:21042744-21042864 57 4.48e-05 AGAATAAAAG GCAGGGCA TGTGAGGTTC chrX:768064-768184 11 4.48e-05 TATCCCGCAA GCTGGGCG AGCAAGGAGA chr3R:13215210-13215330 18 4.48e-05 CCCTATTCAT GCACTGCG AATAATTAGA chr2R:14782986-14783106 56 5.76e-05 TTTGTTAAAA GCGATGCC ACACAAAACC chr3L:16204231-16204351 29 5.76e-05 AAATACACTT GCGAAGCC GGCATTATTA chr3L:8027785-8027905 37 5.76e-05 ACATTGTTCT GCACAGCA ATATGTACAT chr3L:18198788-18198908 32 5.76e-05 CCATTTAAGT GCACTGCA AAAACAGGGA chr2R:17136117-17136237 81 5.76e-05 GTTCGAAATA GCTGGGCA CCAACATATT chr3R:31225141-31225261 105 5.99e-05 AATAAAGACG GCGAAGGG GACAAACC chr3L:12915615-12915735 95 5.99e-05 TAACACAAAA GCGATGGG TGTTGTTGGC chrX:19225044-19225164 8 6.95e-05 TTTTAAC GCTCAGCA TTTTGGGAAA chr2L:19364755-19364875 41 6.95e-05 ACTTGAATAT GCTCTGCA CTAAGGTCAA chrX:6344396-6344516 9 7.84e-05 GTTCTGGT GCGCTGGC AATCGGGTTG chrX:1612014-1612134 20 7.84e-05 CTCCAAAAAA GCGAAGGA AACACACAAT chr3L:11322584-11322704 46 7.84e-05 ACTGCCAAAA GCGATGGa aaagaaaaaa chr2L:17750267-17750387 6 7.84e-05 GGCAA GCAGTGGG CTAAAATCGT chrX:8491629-8491749 30 8.76e-05 TGCCTGGTTT GCAAAGCG CAAATATATT chr3R:14765503-14765623 109 9.68e-05 GTGCTCGATG GCGAGGGA GAGG chr2L:13572079-13572199 72 1.20e-04 TTACCCTTGC GCTAAGCG GGTATATTAA chr3R:25461832-25461952 110 1.20e-04 AGTATATGTA GCAATGCA CAT chr3R:21931460-21931580 59 1.30e-04 TCCTACAAAT GCTGTGGA ACATTACTTA chrX:17542883-17543003 13 1.30e-04 ATCTCAAAAT GCACAGGG CAAAAAAAAA chr3R:30295228-30295348 61 1.30e-04 GACACATTTT GGGGTGCG GCTCCTCCAG chrX:17490005-17490125 38 1.50e-04 AAATGGTATA GCTAAGCA CATCTTTCAA chr2L:18523138-18523258 2 1.50e-04 T GCTAAGCA GGATGTTGTG chr3L:818515-818635 105 1.64e-04 CTCATTCGTA GCTCTGGG CAACGAAA chr3R:16154405-16154525 98 1.64e-04 ACATGCAGTT GGGGAGCA GGCGAAGTTT chr3R:14711573-14711693 46 1.64e-04 CAGAAAAGAT GCACAGGA AAAGATGAGC chr2R:20646221-20646341 7 1.64e-04 CCGACT GCGAAGGC AAACACACAC chr3R:31680021-31680141 20 1.79e-04 GTAAAAACTG GCAGTGGC AATCGCTGGT chr2L:15385571-15385691 8 2.57e-04 TATAAAC GCCCTGCA TCTAGATTGT chr3R:14498202-14498322 63 2.73e-04 GGTGTGACTG CCGGTGCG TAAAAGTAAA chr3L:2835118-2835238 5 2.95e-04 TTTG GGAGAGCA GCCTGTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:740005-740125 4.5e-06 101_[+1]_11 chrX:2334710-2334830 6.9e-06 44_[+1]_68 chrX:14074292-14074412 6.9e-06 67_[+1]_45 chr2R:14126166-14126286 8.2e-06 [+1]_112 chrX:17181731-17181851 1.1e-05 34_[+1]_78 chr3R:10530708-10530828 2.3e-05 66_[+1]_46 chr3R:14691544-14691664 2.3e-05 44_[+1]_68 chr2R:19153425-19153545 3.3e-05 95_[+1]_17 chr2R:21543351-21543471 3.3e-05 29_[+1]_83 chr3R:29758526-29758646 3.3e-05 112_[+1] chr2R:16156409-16156529 4.5e-05 34_[+1]_78 chr2R:19969821-19969941 4.5e-05 37_[+1]_75 chr3L:21042744-21042864 4.5e-05 56_[+1]_56 chrX:768064-768184 4.5e-05 10_[+1]_102 chr3R:13215210-13215330 4.5e-05 17_[+1]_95 chr2R:14782986-14783106 5.8e-05 55_[+1]_57 chr3L:16204231-16204351 5.8e-05 28_[+1]_84 chr3L:8027785-8027905 5.8e-05 36_[+1]_76 chr3L:18198788-18198908 5.8e-05 31_[+1]_81 chr2R:17136117-17136237 5.8e-05 80_[+1]_32 chr3R:31225141-31225261 6e-05 104_[+1]_8 chr3L:12915615-12915735 6e-05 94_[+1]_18 chrX:19225044-19225164 7e-05 7_[+1]_105 chr2L:19364755-19364875 7e-05 40_[+1]_72 chrX:6344396-6344516 7.8e-05 8_[+1]_104 chrX:1612014-1612134 7.8e-05 19_[+1]_93 chr3L:11322584-11322704 7.8e-05 45_[+1]_67 chr2L:17750267-17750387 7.8e-05 5_[+1]_107 chrX:8491629-8491749 8.8e-05 29_[+1]_83 chr3R:14765503-14765623 9.7e-05 108_[+1]_4 chr2L:13572079-13572199 0.00012 71_[+1]_41 chr3R:25461832-25461952 0.00012 109_[+1]_3 chr3R:21931460-21931580 0.00013 58_[+1]_54 chrX:17542883-17543003 0.00013 12_[+1]_100 chr3R:30295228-30295348 0.00013 60_[+1]_52 chrX:17490005-17490125 0.00015 37_[+1]_75 chr2L:18523138-18523258 0.00015 1_[+1]_111 chr3L:818515-818635 0.00016 104_[+1]_8 chr3R:16154405-16154525 0.00016 97_[+1]_15 chr3R:14711573-14711693 0.00016 45_[+1]_67 chr2R:20646221-20646341 0.00016 6_[+1]_106 chr3R:31680021-31680141 0.00018 19_[+1]_93 chr2L:15385571-15385691 0.00026 7_[+1]_105 chr3R:14498202-14498322 0.00027 62_[+1]_50 chr3L:2835118-2835238 0.00029 4_[+1]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDVWGCA width=8 seqs=45 chrX:740005-740125 ( 102) GCGGGGCA 1 chrX:2334710-2334830 ( 45) GCGCAGCA 1 chrX:14074292-14074412 ( 68) GCGCAGCA 1 chr2R:14126166-14126286 ( 1) GCGGAGCC 1 chrX:17181731-17181851 ( 35) GCGATGCG 1 chr3R:10530708-10530828 ( 67) GCAGAGCG 1 chr3R:14691544-14691664 ( 45) GCGAAGCA 1 chr2R:19153425-19153545 ( 96) GCAGTGCA 1 chr2R:21543351-21543471 ( 30) GCGAGGCA 1 chr3R:29758526-29758646 ( 113) GCAGTGCA 1 chr2R:16156409-16156529 ( 35) GCTGAGCA 1 chr2R:19969821-19969941 ( 38) GCTGTGCA 1 chr3L:21042744-21042864 ( 57) GCAGGGCA 1 chrX:768064-768184 ( 11) GCTGGGCG 1 chr3R:13215210-13215330 ( 18) GCACTGCG 1 chr2R:14782986-14783106 ( 56) GCGATGCC 1 chr3L:16204231-16204351 ( 29) GCGAAGCC 1 chr3L:8027785-8027905 ( 37) GCACAGCA 1 chr3L:18198788-18198908 ( 32) GCACTGCA 1 chr2R:17136117-17136237 ( 81) GCTGGGCA 1 chr3R:31225141-31225261 ( 105) GCGAAGGG 1 chr3L:12915615-12915735 ( 95) GCGATGGG 1 chrX:19225044-19225164 ( 8) GCTCAGCA 1 chr2L:19364755-19364875 ( 41) GCTCTGCA 1 chrX:6344396-6344516 ( 9) GCGCTGGC 1 chrX:1612014-1612134 ( 20) GCGAAGGA 1 chr3L:11322584-11322704 ( 46) GCGATGGA 1 chr2L:17750267-17750387 ( 6) GCAGTGGG 1 chrX:8491629-8491749 ( 30) GCAAAGCG 1 chr3R:14765503-14765623 ( 109) GCGAGGGA 1 chr2L:13572079-13572199 ( 72) GCTAAGCG 1 chr3R:25461832-25461952 ( 110) GCAATGCA 1 chr3R:21931460-21931580 ( 59) GCTGTGGA 1 chrX:17542883-17543003 ( 13) GCACAGGG 1 chr3R:30295228-30295348 ( 61) GGGGTGCG 1 chrX:17490005-17490125 ( 38) GCTAAGCA 1 chr2L:18523138-18523258 ( 2) GCTAAGCA 1 chr3L:818515-818635 ( 105) GCTCTGGG 1 chr3R:16154405-16154525 ( 98) GGGGAGCA 1 chr3R:14711573-14711693 ( 46) GCACAGGA 1 chr2R:20646221-20646341 ( 7) GCGAAGGC 1 chr3R:31680021-31680141 ( 20) GCAGTGGC 1 chr2L:15385571-15385691 ( 8) GCCCTGCA 1 chr3R:14498202-14498322 ( 63) CCGGTGCG 1 chr3L:2835118-2835238 ( 5) GGAGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.87119 E= 2.4e-002 -1214 -270 279 -1214 -1214 269 -109 -1214 -21 -270 158 -53 -2 89 141 -1214 30 -1214 -9 26 -1214 -1214 282 -1214 -1214 230 103 -1214 68 -11 103 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.4e-002 0.000000 0.022222 0.977778 0.000000 0.000000 0.933333 0.066667 0.000000 0.311111 0.022222 0.422222 0.244444 0.355556 0.266667 0.377778 0.000000 0.444444 0.000000 0.133333 0.422222 0.000000 0.000000 1.000000 0.000000 0.000000 0.711111 0.288889 0.000000 0.577778 0.133333 0.288889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDVWGCA MEME-1 regular expression -------------------------------------------------------------------------------- GC[GAT][GAC][AT]G[CG][AG] -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GCVCCTGC MEME-2 width = 8 sites = 13 llr = 138 E-value = 9.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4:11:: pos.-specific C :a2a7:27 probability G a:4:2:81 matrix T :::::9:2 bits 2.8 ** * 2.5 ** * 2.3 ** * * 2.0 ** * * Relative 1.7 ** ** * Entropy 1.4 ** ** ** (15.4 bits) 1.1 ** ***** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCACCTGC consensus G G T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30284075-30284195 11 4.35e-07 ACACAGGGTA GCGCCTGC ACAGTGGTTG chr3R:8712839-8712959 83 8.75e-07 CTTTAGCGGC GCCCCTGC TGATAAGTCA chr3L:16211220-16211340 64 1.98e-06 AAACTTTTTA GCACCTGC TACATAGCTG chr2R:10772048-10772168 38 1.98e-06 CGCTTTTATT GCACCTGC TTACTCACTT chrX:2334710-2334830 11 2.41e-06 CTCACTTTAC GCGCGTGC GAATGAGAGA chrX:3380317-3380437 58 7.84e-06 TGCCTTGTGT GCCCCTGT GTTACGGGTG chr2L:5429291-5429411 113 7.84e-06 TGAAAACCGA GCCCCTGT chr2R:18610526-18610646 88 9.39e-06 TTTCCTCAGT GCACCTCC CCAGCCCGCT chrX:768064-768184 49 9.83e-06 AAATATTGAC GCGCGTCC AATTCGCAAG chr3R:14765503-14765623 90 1.30e-05 TCTCTTGGCC GCACCTGT TGTGCTCGAT chr2L:18146786-18146906 95 1.51e-05 AGCACTAATC GCGCATGC TAACGACATG chrX:4322835-4322955 91 1.66e-05 TCCCATACTC GCGCGTGG TAAACAAGAC chr2R:24163435-24163555 13 1.82e-05 TGCTTTTCGA GCACCAGC CACAGTAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30284075-30284195 4.3e-07 10_[+2]_102 chr3R:8712839-8712959 8.8e-07 82_[+2]_30 chr3L:16211220-16211340 2e-06 63_[+2]_49 chr2R:10772048-10772168 2e-06 37_[+2]_75 chrX:2334710-2334830 2.4e-06 10_[+2]_102 chrX:3380317-3380437 7.8e-06 57_[+2]_55 chr2L:5429291-5429411 7.8e-06 112_[+2] chr2R:18610526-18610646 9.4e-06 87_[+2]_25 chrX:768064-768184 9.8e-06 48_[+2]_64 chr3R:14765503-14765623 1.3e-05 89_[+2]_23 chr2L:18146786-18146906 1.5e-05 94_[+2]_18 chrX:4322835-4322955 1.7e-05 90_[+2]_22 chr2R:24163435-24163555 1.8e-05 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCVCCTGC width=8 seqs=13 chr3R:30284075-30284195 ( 11) GCGCCTGC 1 chr3R:8712839-8712959 ( 83) GCCCCTGC 1 chr3L:16211220-16211340 ( 64) GCACCTGC 1 chr2R:10772048-10772168 ( 38) GCACCTGC 1 chrX:2334710-2334830 ( 11) GCGCGTGC 1 chrX:3380317-3380437 ( 58) GCCCCTGT 1 chr2L:5429291-5429411 ( 113) GCCCCTGT 1 chr2R:18610526-18610646 ( 88) GCACCTCC 1 chrX:768064-768184 ( 49) GCGCGTCC 1 chr3R:14765503-14765623 ( 90) GCACCTGT 1 chr2L:18146786-18146906 ( 95) GCGCATGC 1 chrX:4322835-4322955 ( 91) GCGCGTGG 1 chr2R:24163435-24163555 ( 13) GCACCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 9.7e+000 -1035 -1035 282 -1035 -1035 279 -1035 -1035 9 68 144 -1035 -1035 279 -1035 -1035 -223 226 70 -1035 -223 -1035 -1035 139 -1035 9 258 -1035 -1035 226 -88 -61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.7e+000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.384615 0.230769 0.384615 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.692308 0.230769 0.000000 0.076923 0.000000 0.000000 0.923077 0.000000 0.153846 0.846154 0.000000 0.000000 0.692308 0.076923 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCVCCTGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[AGC]C[CG]TG[CT] -------------------------------------------------------------------------------- Time 13.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GYKGGCKG MEME-3 width = 8 sites = 8 llr = 89 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :411:a1: probability G a:49a:4a matrix T :65:::5: bits 2.8 * ** * 2.5 * ** * 2.3 * *** * 2.0 * *** * Relative 1.7 * *** * Entropy 1.4 * *** * (16.1 bits) 1.1 ** *** * 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTTGGCTG consensus CG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13302646-13302766 89 5.87e-07 ACCGCAAATG GTGGGCGG AGGGCGGCGG chr3R:13941555-13941675 74 1.43e-06 TCGTCACTAA GCGGGCTG TAGGACATAA chr2R:20646221-20646341 102 3.50e-06 AAATCATTCT GTTGGCGG CTCGACCTGC chr2L:12513969-12514089 101 4.90e-06 gttttgCTCG GCTGGCTG CAAGCAAGCA chr3L:12915615-12915735 107 8.32e-06 GATGGGTGTT GTTGGCTG AAGTTA chrX:3380317-3380437 89 9.18e-06 GACCTATTTC GCTGGCCG TTGGTGTGGC chr2R:18894908-18895028 98 1.15e-05 TATTCCTCGC GTCGGCTG CTGAAACGTA chr3L:13212991-13213111 7 1.20e-05 GGTCAA GTGCGCGG GTAAATGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13302646-13302766 5.9e-07 88_[+3]_24 chr3R:13941555-13941675 1.4e-06 73_[+3]_39 chr2R:20646221-20646341 3.5e-06 101_[+3]_11 chr2L:12513969-12514089 4.9e-06 100_[+3]_12 chr3L:12915615-12915735 8.3e-06 106_[+3]_6 chrX:3380317-3380437 9.2e-06 88_[+3]_24 chr2R:18894908-18895028 1.1e-05 97_[+3]_15 chr3L:13212991-13213111 1.2e-05 6_[+3]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYKGGCKG width=8 seqs=8 chrX:13302646-13302766 ( 89) GTGGGCGG 1 chr3R:13941555-13941675 ( 74) GCGGGCTG 1 chr2R:20646221-20646341 ( 102) GTTGGCGG 1 chr2L:12513969-12514089 ( 101) GCTGGCTG 1 chr3L:12915615-12915735 ( 107) GTTGGCTG 1 chrX:3380317-3380437 ( 89) GCTGGCCG 1 chr2R:18894908-18895028 ( 98) GTCGGCTG 1 chr3L:13212991-13213111 ( 7) GTGCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 3.1e+003 -965 -965 282 -965 -965 138 -965 82 -965 -21 140 50 -965 -21 263 -965 -965 -965 282 -965 -965 279 -965 -965 -965 -21 140 50 -965 -965 282 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.125000 0.375000 0.500000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYKGGCKG MEME-3 regular expression -------------------------------------------------------------------------------- G[TC][TG]GGC[TG]G -------------------------------------------------------------------------------- Time 20.10 secs. ******************************************************************************** ******************************************************************************** MOTIF KSGGSGGG MEME-4 width = 8 sites = 2 llr = 26 E-value = 6.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :5::5::: probability G 55aa5aaa matrix T 5::::::: bits 2.8 ** *** 2.5 ** *** 2.3 ** *** 2.0 ** *** Relative 1.7 ******* Entropy 1.4 ******* (18.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCGGCGGG consensus TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13302646-13302766 100 6.71e-07 TGGGCGGAGG GCGGCGGG AATCGTTGGG chr2L:12513969-12514089 19 2.34e-06 tttttttttt tggggggg ttttgtgttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13302646-13302766 6.7e-07 99_[+4]_13 chr2L:12513969-12514089 2.3e-06 18_[+4]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KSGGSGGG width=8 seqs=2 chrX:13302646-13302766 ( 100) GCGGCGGG 1 chr2L:12513969-12514089 ( 19) TGGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.9e+003 -765 -765 181 50 -765 179 181 -765 -765 -765 281 -765 -765 -765 281 -765 -765 179 181 -765 -765 -765 281 -765 -765 -765 281 -765 -765 -765 281 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.9e+003 0.000000 0.000000 0.500000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KSGGSGGG MEME-4 regular expression -------------------------------------------------------------------------------- [GT][CG]GG[CG]GGG -------------------------------------------------------------------------------- Time 26.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTTTGC MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::a probability G aaa:::a: matrix T :::aaa:: bits 2.8 *** ** 2.5 *** ** 2.3 *** ** 2.0 *** ** Relative 1.7 *** ** Entropy 1.4 ******** (18.6 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGGTTTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19969821-19969941 110 2.58e-06 ACATTGTGAA GGGTTTGC ACA chr3R:24614263-24614383 76 2.58e-06 GGCAGATTTT GGGTTTGC CTTCCttttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19969821-19969941 2.6e-06 109_[+5]_3 chr3R:24614263-24614383 2.6e-06 75_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTTTGC width=8 seqs=2 chr2R:19969821-19969941 ( 110) GGGTTTGC 1 chr3R:24614263-24614383 ( 76) GGGTTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.6e+004 -765 -765 281 -765 -765 -765 281 -765 -765 -765 281 -765 -765 -765 -765 150 -765 -765 -765 150 -765 -765 -765 150 -765 -765 281 -765 -765 279 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTTGC MEME-5 regular expression -------------------------------------------------------------------------------- GGGTTTGC -------------------------------------------------------------------------------- Time 32.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30295025-30295145 3.27e-01 120 chr3L:12915615-12915735 1.08e-04 94_[+1(5.99e-05)]_4_[+3(8.32e-06)]_\ 6 chr2R:7531312-7531432 8.69e-01 120 chrX:16873151-16873271 8.46e-01 120 chrX:17493769-17493889 2.21e-01 120 chrX:18256379-18256499 3.61e-01 120 chr3L:18137347-18137467 3.10e-01 120 chr3L:16174864-16174984 1.00e+00 120 chrX:342577-342697 6.29e-01 120 chr3L:20990368-20990488 9.96e-01 120 chr3L:12016331-12016451 7.13e-01 120 chr2R:12646917-12647037 7.37e-01 120 chr3R:30295228-30295348 5.56e-04 120 chrX:17113428-17113548 9.61e-01 120 chr2L:11052518-11052638 4.72e-02 120 chr2R:19968844-19968964 1.92e-01 92_[+2(8.97e-05)]_20 chr2L:6508845-6508965 6.48e-01 120 chrX:17542883-17543003 1.09e-01 120 chr2R:21474651-21474771 4.12e-01 120 chr3R:30256370-30256490 9.10e-01 120 chr3R:17202460-17202580 9.21e-01 120 chr3R:21823178-21823298 3.61e-01 120 chr3R:13215210-13215330 1.09e-02 17_[+1(4.48e-05)]_95 chr3R:23496673-23496793 5.83e-02 120 chr2R:19149892-19150012 9.99e-01 120 chrX:3867181-3867301 1.53e-01 120 chr2L:18482211-18482331 1.04e-01 120 chr3L:6270416-6270536 9.96e-01 120 chr3R:31688795-31688915 8.49e-01 120 chr3L:16183231-16183351 7.83e-01 120 chrX:18540355-18540475 9.76e-01 120 chrX:11658566-11658686 3.00e-03 10_[+4(8.07e-06)]_102 chr2R:18304620-18304740 9.82e-01 120 chr2R:14923058-14923178 8.48e-01 120 chr3R:18157619-18157739 8.10e-01 120 chr3L:6085248-6085368 1.00e+00 120 chr3R:21931460-21931580 3.02e-01 120 chr3L:10942663-10942783 1.00e+00 120 chr3R:25759614-25759734 7.59e-01 120 chr2L:18468145-18468265 4.51e-01 120 chr3L:10968787-10968907 9.62e-01 120 chr3R:30843214-30843334 3.02e-01 120 chr3R:21649601-21649721 6.45e-01 120 chr3R:14691544-14691664 1.22e-01 44_[+1(2.27e-05)]_68 chr2R:20646221-20646341 1.05e-04 101_[+3(3.50e-06)]_11 chr2L:14995185-14995305 1.00e+00 120 chr3R:14421943-14422063 4.52e-01 120 chr2L:16406630-16406750 9.48e-01 120 chr3L:16212072-16212192 9.26e-01 120 chr3R:13934757-13934877 6.58e-01 120 chr2L:7199716-7199836 8.35e-01 120 chr3R:22424179-22424299 5.09e-01 120 chr3L:15174258-15174378 1.30e-01 120 chr2L:17421488-17421608 4.38e-02 120 chr2L:5429291-5429411 3.59e-02 112_[+2(7.84e-06)] chr3L:15209180-15209300 1.00e+00 120 chrX:17181731-17181851 1.64e-02 34_[+1(1.14e-05)]_78 chr3L:10757058-10757178 6.94e-01 120 chr3L:16168151-16168271 6.36e-01 120 chr2L:17750267-17750387 2.86e-03 5_[+1(7.84e-05)]_107 chrX:14897728-14897848 5.56e-01 120 chr3R:6106792-6106912 2.16e-01 120 chr3R:26429776-26429896 9.97e-01 120 chr3R:14711573-14711693 2.31e-01 120 chr3R:6343668-6343788 6.26e-01 120 chr3R:24906101-24906221 8.49e-01 120 chr3R:30461656-30461776 1.80e-01 120 chr3L:12275810-12275930 8.21e-01 120 chr2R:13478493-13478613 9.29e-01 120 chr2R:10772048-10772168 5.02e-02 37_[+2(1.98e-06)]_75 chr2R:18610526-18610646 3.86e-04 87_[+2(9.39e-06)]_3_[+3(2.12e-05)]_\ 14 chr3L:21080582-21080702 5.79e-01 120 chr2R:19985108-19985228 9.63e-01 120 chr3L:11374013-11374133 1.00e+00 120 chr3R:26968150-26968270 5.42e-01 120 chrX:367052-367172 7.39e-01 120 chrX:12000355-12000475 8.11e-01 120 chr2L:2944627-2944747 7.99e-01 120 chr3L:17007030-17007150 1.46e-01 80_[+5(9.43e-05)]_32 chr3R:31991893-31992013 9.97e-01 120 chr3L:6269118-6269238 2.26e-01 120 chr3L:19055191-19055311 3.78e-01 120 chr3R:16154405-16154525 1.20e-02 120 chr3L:5128351-5128471 6.44e-01 120 chr2L:16537146-16537266 9.98e-01 120 chr2R:14969714-14969834 9.35e-01 120 chrX:13307276-13307396 9.19e-01 120 chr3L:10928063-10928183 7.46e-01 120 chr2R:21569779-21569899 9.38e-01 120 chr2R:21495562-21495682 1.36e-02 60_[+2(8.97e-05)]_52 chr2L:13893692-13893812 4.14e-01 120 chr2L:5289994-5290114 9.83e-01 120 chr3R:29758526-29758646 1.40e-01 112_[+1(3.33e-05)] chr3R:8712839-8712959 6.82e-05 82_[+2(8.75e-07)]_10_[+1(8.76e-05)]_\ 12 chr3R:14498202-14498322 8.56e-03 120 chr3L:14610567-14610687 9.48e-01 120 chr3R:14048895-14049015 1.00e+00 120 chrX:10104625-10104745 9.80e-01 120 chr3L:11467148-11467268 1.00e+00 120 chrX:4175940-4176060 1.17e-01 120 chr3R:8969000-8969120 9.99e-01 120 chr3R:9913578-9913698 1.46e-01 120 chr3L:10786194-10786314 8.93e-01 120 chr2R:16812241-16812361 9.98e-01 120 chr2L:18694823-18694943 1.52e-01 120 chr3L:21060581-21060701 2.87e-01 120 chr3L:1064554-1064674 6.31e-01 120 chr3R:24614263-24614383 2.91e-03 75_[+5(2.58e-06)]_37 chrX:19878925-19879045 9.43e-01 120 chrX:2788746-2788866 4.14e-01 120 chr2R:17136117-17136237 2.77e-02 80_[+1(5.76e-05)]_32 chr3L:9551306-9551426 1.26e-01 120 chr2R:21470553-21470673 9.73e-01 120 chr3L:6458890-6459010 7.34e-01 120 chr3L:10352243-10352363 1.87e-03 103_[+4(8.70e-05)]_9 chr3L:531412-531532 6.50e-01 120 chr3R:25461832-25461952 9.51e-02 120 chr3L:1374588-1374708 5.77e-01 120 chrX:22479474-22479594 5.78e-01 120 chr2L:2432928-2433048 7.14e-02 120 chr2L:4348694-4348814 2.15e-01 120 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chr3L:7149893-7150013 8.46e-01 120 chrX:2334710-2334830 7.63e-07 10_[+2(2.41e-06)]_26_[+1(6.87e-06)]_\ 68 chrX:17490005-17490125 3.07e-02 120 chr3L:15762877-15762997 9.96e-01 120 chr2R:21569037-21569157 5.36e-01 120 chr2R:16156409-16156529 7.14e-02 34_[+1(4.48e-05)]_78 chr2R:22570726-22570846 1.54e-01 120 chr2L:18353004-18353124 9.65e-01 120 chr3R:14430437-14430557 3.48e-02 120 chr3R:27140106-27140226 6.38e-03 120 chrX:6339154-6339274 4.30e-01 120 chr3R:31225141-31225261 3.08e-03 104_[+1(5.99e-05)]_8 chr3R:22324867-22324987 1.21e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************