******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8478.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:5732-5852 1.0000 120 chr2L:18455914-18456034 1.0000 120 chr2R:21160075-21160195 1.0000 120 chrX:16586516-16586636 1.0000 120 chr2R:14790746-14790866 1.0000 120 chrX:19546395-19546515 1.0000 120 chr3R:27736716-27736836 1.0000 120 chrX:655519-655639 1.0000 120 chr2R:18973089-18973209 1.0000 120 chr3R:21126871-21126991 1.0000 120 chrX:20411775-20411895 1.0000 120 chrX:19579084-19579204 1.0000 120 chrX:21231790-21231910 1.0000 120 chr3L:3247273-3247393 1.0000 120 chrX:12753210-12753330 1.0000 120 chr3L:5179295-5179415 1.0000 120 chr3L:12433865-12433985 1.0000 120 chr2L:1669770-1669890 1.0000 120 chrX:4444950-4445070 1.0000 120 chrX:654432-654552 1.0000 120 chr3R:7753714-7753834 1.0000 120 chrX:19640956-19641076 1.0000 120 chrX:3861238-3861358 1.0000 120 chr3L:9854359-9854479 1.0000 120 chrX:20159384-20159504 1.0000 120 chrX:21351281-21351401 1.0000 120 chr2L:1644495-1644615 1.0000 120 chrX:7204878-7204998 1.0000 120 chr2R:14526874-14526994 1.0000 120 chr2L:19142244-19142364 1.0000 120 chr3L:3461596-3461716 1.0000 120 chr3L:16639199-16639319 1.0000 120 chr2R:11228642-11228762 1.0000 120 chrX:16608000-16608120 1.0000 120 chrX:636764-636884 1.0000 120 chrX:9109865-9109985 1.0000 120 chr3L:5610710-5610830 1.0000 120 chrX:10858006-10858126 1.0000 120 chrX:17077296-17077416 1.0000 120 chr2L:15271610-15271730 1.0000 120 chr3R:21860093-21860213 1.0000 120 chrX:18864220-18864340 1.0000 120 chr3R:31938079-31938199 1.0000 120 chr2L:548272-548392 1.0000 120 chrX:11325661-11325781 1.0000 120 chr3L:16930622-16930742 1.0000 120 chr2R:22297920-22298040 1.0000 120 chrX:19522633-19522753 1.0000 120 chr3R:6741804-6741924 1.0000 120 chr2L:9698819-9698939 1.0000 120 chr2R:16221328-16221448 1.0000 120 chrX:2634528-2634648 1.0000 120 chrX:9666587-9666707 1.0000 120 chrX:9675055-9675175 1.0000 120 chrX:12018959-12019079 1.0000 120 chr3R:26797901-26798021 1.0000 120 chrX:22540082-22540202 1.0000 120 chrX:18137453-18137573 1.0000 120 chr3R:9969302-9969422 1.0000 120 chr2R:14965806-14965926 1.0000 120 chr2R:20556811-20556931 1.0000 120 chrX:10474130-10474250 1.0000 120 chrX:17077570-17077690 1.0000 120 chr3R:7313148-7313268 1.0000 120 chr2R:16000853-16000973 1.0000 120 chr3R:13975057-13975177 1.0000 120 chr2R:19456623-19456743 1.0000 120 chr2R:7300817-7300937 1.0000 120 chr3L:18865900-18866020 1.0000 120 chr3R:29572066-29572186 1.0000 120 chrX:19496050-19496170 1.0000 120 chrX:21369379-21369499 1.0000 120 chr3R:26103586-26103706 1.0000 120 chr2R:9039529-9039649 1.0000 120 chrX:8905751-8905871 1.0000 120 chr3R:6383277-6383397 1.0000 120 chr2L:14020609-14020729 1.0000 120 chr3L:17972176-17972296 1.0000 120 chrX:10816994-10817114 1.0000 120 chrX:19637745-19637865 1.0000 120 chr3R:25184578-25184698 1.0000 120 chr2L:11969043-11969163 1.0000 120 chr3R:24876143-24876263 1.0000 120 chr3R:10546734-10546854 1.0000 120 chr3L:17011869-17011989 1.0000 120 chr3R:24230868-24230988 1.0000 120 chr2L:8100106-8100226 1.0000 120 chrX:19637427-19637547 1.0000 120 chrX:2158200-2158320 1.0000 120 chrX:2643132-2643252 1.0000 120 chr3R:31405618-31405738 1.0000 120 chr2R:14621912-14622032 1.0000 120 chr3R:10079380-10079500 1.0000 120 chrX:16943586-16943706 1.0000 120 chrX:13089984-13090104 1.0000 120 chrX:12716011-12716131 1.0000 120 chr2R:25285545-25285665 1.0000 120 chr3R:29206861-29206981 1.0000 120 chr2R:23046136-23046256 1.0000 120 chr2R:22242426-22242546 1.0000 120 chr3L:12690811-12690931 1.0000 120 chr3L:17010688-17010808 1.0000 120 chr2R:20831877-20831997 1.0000 120 chr2L:2955732-2955852 1.0000 120 chr2R:14504201-14504321 1.0000 120 chr3R:12982146-12982266 1.0000 120 chr2L:12527739-12527859 1.0000 120 chr2R:12979785-12979905 1.0000 120 chr2L:6921276-6921396 1.0000 120 chr2L:1987487-1987607 1.0000 120 chr2R:12592330-12592450 1.0000 120 chrX:21060743-21060863 1.0000 120 chr2L:16257232-16257352 1.0000 120 chrX:19866456-19866576 1.0000 120 chrX:17423710-17423830 1.0000 120 chrX:5579617-5579737 1.0000 120 chr2L:2993283-2993403 1.0000 120 chr3L:10325215-10325335 1.0000 120 chr3R:22397396-22397516 1.0000 120 chr2L:868039-868159 1.0000 120 chr3R:28635400-28635520 1.0000 120 chr2L:3540056-3540176 1.0000 120 chr3R:12628577-12628697 1.0000 120 chrX:7320950-7321070 1.0000 120 chrX:17651869-17651989 1.0000 120 chr3R:9725172-9725292 1.0000 120 chr3L:16985739-16985859 1.0000 120 chr2L:5421701-5421821 1.0000 120 chr2L:16325209-16325329 1.0000 120 chr2L:2886269-2886389 1.0000 120 chr3L:3069916-3070036 1.0000 120 chrX:10211802-10211922 1.0000 120 chr3L:15816041-15816161 1.0000 120 chr3L:2823700-2823820 1.0000 120 chr3R:10133405-10133525 1.0000 120 chrX:8560888-8561008 1.0000 120 chr2R:13957120-13957240 1.0000 120 chr3L:10898508-10898628 1.0000 120 chr3L:1349834-1349954 1.0000 120 chr2L:6324117-6324237 1.0000 120 chr2R:12173008-12173128 1.0000 120 chrX:10473882-10474002 1.0000 120 chr2R:17027773-17027893 1.0000 120 chr2R:12884452-12884572 1.0000 120 chr2R:8396793-8396913 1.0000 120 chr3R:14326372-14326492 1.0000 120 chr2R:21634896-21635016 1.0000 120 chrX:17652076-17652196 1.0000 120 chrX:6534222-6534342 1.0000 120 chr3L:3070126-3070246 1.0000 120 chr2L:16824982-16825102 1.0000 120 chr3L:432731-432851 1.0000 120 chr2R:9577617-9577737 1.0000 120 chr2L:3789809-3789929 1.0000 120 chr2L:8104193-8104313 1.0000 120 chrX:15306389-15306509 1.0000 120 chrX:13128367-13128487 1.0000 120 chr2L:6724256-6724376 1.0000 120 chr3L:3035394-3035514 1.0000 120 chrX:3407803-3407923 1.0000 120 chr3R:23601680-23601800 1.0000 120 chr3R:25080562-25080682 1.0000 120 chr2L:7038238-7038358 1.0000 120 chr3L:12434543-12434663 1.0000 120 chr2L:1077134-1077254 1.0000 120 chrX:15710061-15710181 1.0000 120 chr3R:16403645-16403765 1.0000 120 chr3R:9886562-9886682 1.0000 120 chr3L:3060124-3060244 1.0000 120 chr3L:15104648-15104768 1.0000 120 chr3R:12442953-12443073 1.0000 120 chr3L:1891117-1891237 1.0000 120 chrX:1970641-1970761 1.0000 120 chrX:17314351-17314471 1.0000 120 chr3R:31060730-31060850 1.0000 120 chrX:3162173-3162293 1.0000 120 chr3R:16899199-16899319 1.0000 120 chr2R:17028112-17028232 1.0000 120 chr2L:3538679-3538799 1.0000 120 chrX:6013306-6013426 1.0000 120 chr3L:9854562-9854682 1.0000 120 chr3L:19907456-19907576 1.0000 120 chr3R:18244299-18244419 1.0000 120 chr3R:12279036-12279156 1.0000 120 chrX:4930552-4930672 1.0000 120 chrX:19697356-19697476 1.0000 120 chr2R:13941171-13941291 1.0000 120 chr2R:19424441-19424561 1.0000 120 chr3R:18923639-18923759 1.0000 120 chrX:8410395-8410515 1.0000 120 chr3R:5592301-5592421 1.0000 120 chr3L:14562754-14562874 1.0000 120 chr3R:16403847-16403967 1.0000 120 chr3R:13877275-13877395 1.0000 120 chr2L:12546203-12546323 1.0000 120 chrX:11154747-11154867 1.0000 120 chr2R:10604202-10604322 1.0000 120 chrX:20159166-20159286 1.0000 120 chr3L:17964944-17965064 1.0000 120 chrX:8056861-8056981 1.0000 120 chr2R:22080338-22080458 1.0000 120 chr3L:319420-319540 1.0000 120 chr3R:16453174-16453294 1.0000 120 chrX:2140673-2140793 1.0000 120 chr2R:15611032-15611152 1.0000 120 chr2L:11516599-11516719 1.0000 120 chrX:7930785-7930905 1.0000 120 chr2R:25061688-25061808 1.0000 120 chr2L:2038005-2038125 1.0000 120 chrX:9729202-9729322 1.0000 120 chr3R:20253756-20253876 1.0000 120 chr2R:17535440-17535560 1.0000 120 chr3L:10898253-10898373 1.0000 120 chr3L:9019402-9019522 1.0000 120 chr2R:20903602-20903722 1.0000 120 chrX:8757880-8758000 1.0000 120 chr3L:16377972-16378092 1.0000 120 chr3L:12627748-12627868 1.0000 120 chrX:16217422-16217542 1.0000 120 chrX:10472978-10473098 1.0000 120 chr3L:8442050-8442170 1.0000 120 chr3R:6848675-6848795 1.0000 120 chrX:6694530-6694650 1.0000 120 chr3R:15291574-15291694 1.0000 120 chr2L:2364482-2364602 1.0000 120 chr2R:12904425-12904545 1.0000 120 chr3R:24234077-24234197 1.0000 120 chr2L:15499466-15499586 1.0000 120 chrX:5594001-5594121 1.0000 120 chr3R:28889422-28889542 1.0000 120 chr2R:8024493-8024613 1.0000 120 chr3R:18923848-18923968 1.0000 120 chr2L:16485931-16486051 1.0000 120 chrX:19851232-19851352 1.0000 120 chr2R:18157702-18157822 1.0000 120 chr3R:16830175-16830295 1.0000 120 chrX:17789644-17789764 1.0000 120 chr3L:342991-343111 1.0000 120 chrX:8806721-8806841 1.0000 120 chr2R:14848240-14848360 1.0000 120 chr3R:25094746-25094866 1.0000 120 chr2R:9284444-9284564 1.0000 120 chr3L:12580478-12580598 1.0000 120 chrX:12736241-12736361 1.0000 120 chr3R:16934433-16934553 1.0000 120 chr3L:16052319-16052439 1.0000 120 chr3R:11353581-11353701 1.0000 120 chr2L:6833708-6833828 1.0000 120 chrX:12750371-12750491 1.0000 120 chr2L:16827218-16827338 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8478/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8478.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.229 G 0.234 T 0.267 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.229 G 0.234 T 0.267 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGMGAGA MEME-1 width = 8 sites = 88 llr = 729 E-value = 3.4e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a24:91a pos.-specific C :::5:::: probability G 9:81a19: matrix T :::1:::: bits 2.1 * 1.9 * 1.7 ** * ** 1.5 ** * ** Relative 1.3 ** **** Entropy 1.1 *** **** (12.0 bits) 0.9 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGCGAGA consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18923848-18923968 84 1.35e-05 CTGAGAGTGT GAGCGAGA TGGCCTTCTA chrX:5594001-5594121 69 1.35e-05 GCTGGCGCGT GAGCGAGA CGACTGCAGC chr2R:12904425-12904545 25 1.35e-05 GCCTGCGTCC GAGCGAGA CAACTGTAGT chr2R:22080338-22080458 92 1.35e-05 GAGTGGGAGA GAGCGAGA GAGAGCACAG chr3R:5592301-5592421 80 1.35e-05 CAATGTGTTG GAGCGAGA CGACTAGCCC chr2R:13941171-13941291 22 1.35e-05 CACTGGGCGA GAGCGAGA GAGGGCGCAT chr2L:3538679-3538799 54 1.35e-05 GGGGGTGAGC GAGCGAGA CGGCGCGAAA chrX:3162173-3162293 107 1.35e-05 GCGGCAGTGC GAGCGAGA GGGCAG chrX:17314351-17314471 5 1.35e-05 GTGC GAGCGAGA GGCAGTCGCG chr3R:25080562-25080682 55 1.35e-05 ACAAGCGGCT GAGCGAGA TGGAGCGATA chrX:15306389-15306509 32 1.35e-05 CCAGCAGACA GAGCGAGA CGGATAGAGG chrX:6534222-6534342 36 1.35e-05 CTTCgcgagc gagcgaga tagcgcgaca chrX:8560888-8561008 73 1.35e-05 CAACGAAAGT GAGCGAGA AGCAGAAATT chr2L:12527739-12527859 10 1.35e-05 TGCAAGAGT GAGCGAGA CGACGAGTCG chrX:12716011-12716131 67 1.35e-05 accagcgagc gagcgaga gagagctagt chr3L:17011869-17011989 25 1.35e-05 GCGCCTGCCA GAGCGAGA TGGCGGATGC chrX:19496050-19496170 18 1.35e-05 GAGGGAACAC GAGCGAGA CAGCAGCCGG chr2R:7300817-7300937 96 1.35e-05 TTGAGTGAAA GAGCGAGA TAGCTATTGT chr3R:7313148-7313268 15 1.35e-05 GAGTGCCGCA GAGCGAGA CAACAGGGCG chr3R:26797901-26798021 64 1.35e-05 GCAAGCGGCA GAGCGAGA GGGTAGATGT chr2L:548272-548392 72 1.35e-05 TGCCAAGAGC GAGCGAGA GGAGAACATC chr3R:31938079-31938199 64 1.35e-05 CAAAATGATT GAGCGAGA GGCAGACAGC chr3L:5610710-5610830 59 1.35e-05 ACGTGCGAGC GAGCGAGA GAGCAGGTGC chrX:16608000-16608120 61 1.35e-05 CCACAAATGC GAGCGAGA CAGACGTAAG chr3L:12433865-12433985 20 1.35e-05 AAAGGAGACA GAGCGAGA AGGAAAGCGC chr2R:18973089-18973209 107 1.35e-05 cagcgagtgc gagcgaga gagggc chr2L:6833708-6833828 110 2.94e-05 CAGCGTGTGT GAGAGAGA GGC chr3R:6848675-6848795 14 2.94e-05 AAAAGTGTGC GAGAGAGA CAACGGGCAT chrX:16217422-16217542 1 2.94e-05 . gagagaga gggagccgga chr3L:16377972-16378092 113 2.94e-05 AGACCCCAGA GAGAGAGA chr2R:15611032-15611152 8 2.94e-05 agaacga gagagaga gagcgagtga chr3L:17964944-17965064 35 2.94e-05 gagagacaga gagagaga gagaCGGCAT chrX:11154747-11154867 82 2.94e-05 GAGTGGGTGG GAGAGAGA GCGTGGTGAC chr3R:12279036-12279156 36 2.94e-05 CAGTGGAGCC GAGAGAGA TGGAGCTCTT chrX:3407803-3407923 36 2.94e-05 AACAACAACA GAGAGAGA GAGAGCACAA chr2R:12884452-12884572 76 2.94e-05 ACTGCCGTGC GAGAGAGA TGGCCCGATA chr3R:24230868-24230988 2 2.94e-05 G GAGAGAGA CGAGGCTATC chr2L:11969043-11969163 31 2.94e-05 gaacgagaga gagagaga gagagcgaTT chrX:10816994-10817114 16 2.94e-05 GAGCGCGTGC GAGAGAGA TGCACAACGC chrX:654432-654552 77 2.94e-05 TTgaaagaga gagagaga gaccgagaaa chrX:12736241-12736361 87 4.50e-05 ATAGAAGTGC GAACGAGA TGGGGCGATG chrX:8757880-8758000 18 4.50e-05 CCTTTGGCCA GAACGAGA CGGCACTACA chr2L:1644495-1644615 77 4.50e-05 AAGAAGGCCA GAACGAGA TAGCGGGTGT chr2L:1669770-1669890 6 4.50e-05 GGGGG GAACGAGA TGGATGCACG chrX:8410395-8410515 31 6.34e-05 AGCAGCAGCA GAAAGAGA CACAGAGAGC chr2L:6724256-6724376 56 6.34e-05 CCAGTTATGC GAAAGAGA AAAAGTACtg chr2L:5421701-5421821 12 6.34e-05 GAGTCGGTCA GAAAGAGA GCGAACACTT chrX:17423710-17423830 94 6.34e-05 TAGCATGCGA GAAAGAGA CAGTGCAACG chr3R:10546734-10546854 6 6.34e-05 AAAGG GAAAGAGA CGGGGCATTT chr3L:16639199-16639319 18 6.34e-05 TTAGCGCCAT GAAAGAGA AGGAGGCATT chr3L:3247273-3247393 42 6.34e-05 CCACGCAAAG GAAAGAGA CGGAGCGATT chr3L:3069916-3070036 59 7.72e-05 AGGGTGGAGA GAGGGAGA GAGGTGTTTT chr2R:9039529-9039649 84 7.72e-05 ACACAAGTGC GAGGGAGA TGACTAGTCT chrX:11325661-11325781 54 7.72e-05 GTGGTGACTA GAGGGAGA GACAAGCAGA chr2R:8024493-8024613 66 1.09e-04 GCAATTGACG GAGTGAGA TGGCAGCACT chr3L:12434543-12434663 23 1.09e-04 CTGGCCAACT GAGTGAGA GCGAGTGAGA chr3L:10325215-10325335 77 1.09e-04 CCATCTGTGT GAGTGAGA Gctctctctt chr3R:25184578-25184698 43 1.09e-04 GGGGCAGCCA AAGCGAGA GGACTTCTTC chr2R:19456623-19456743 30 1.09e-04 gctgctgtgc GAGTGAGA GCGGTCGAGA chrX:9675055-9675175 54 1.09e-04 GTGTGCGTGC AAGCGAGA TGGTTATATG chr2L:18455914-18456034 52 1.09e-04 CGCCACTGGT AAGCGAGA AAATTGATTA chr3R:13877275-13877395 90 1.20e-04 CCGTTGGAGT GAGCGGGA TGGGTGTTGG chr3L:19907456-19907576 58 1.20e-04 CAGTGCGTGC GAGCGGGA TGGCAAGTTG chr2R:17027773-17027893 8 1.20e-04 CTTGACG GAGCGGGA AGCGATCGAA chr2R:23046136-23046256 75 1.20e-04 CATTGAGTGG GAGCGGGA TGGCAAGACA chr3R:16899199-16899319 8 1.39e-04 ATAAATT AAGAGAGA CGTGATAAGA chr2L:2364482-2364602 63 1.68e-04 TACGAGGGGT GAGCGAAA ACAACAACGC chr2R:14621912-14622032 80 1.68e-04 GCGGTGAAAA GAGAGGGA CAGCCGGCAT chrX:3861238-3861358 100 1.68e-04 GAGTGATGGA GAGAGGGA GCCGTCTCTC chr3R:10133405-10133525 27 1.91e-04 TCAAAAAGTT GAGCGCGA TTATTACACT chr2L:2993283-2993403 97 1.91e-04 TTCATCAGGT GAGCGAGC AGCAGCAGCA chr2L:16485931-16486051 4 2.09e-04 ACT GAGAGAAA TGCGCGCGCA chr3R:20253756-20253876 61 2.09e-04 TATACGTACA GAGAGAAA CGGACGCCTA chrX:21060743-21060863 76 2.09e-04 TTAGGCGAAG GAGAGAAA GGTGGAAGAT chr2R:9284444-9284564 93 2.66e-04 AGTGCGAGGG GAAGGAGA GATGCAGCGC chr3L:3035394-3035514 105 2.66e-04 atgtgtgagt gAAGGAGA AGGAAGTA chr2L:2955732-2955852 86 2.66e-04 TATAAATAAG GAGAGCGA GGTATTGTTG chr3L:1349834-1349954 14 3.02e-04 TGATTTGGCC AAACGAGA ATTCGCGGAA chr2R:10604202-10604322 32 3.31e-04 AAATGGGAGC GACAGAGA GGGCTAGACG chr3L:432731-432851 46 3.31e-04 TTGTGTGTTA GACAGAGA AATCCACGTC chrX:2140673-2140793 28 3.52e-04 TATGGGGTGC AAAAGAGA TAGCACCATT chrX:21369379-21369499 89 3.52e-04 GCTTGAGAAA AAAAGAGA AAGAGCTATC chrX:10474130-10474250 61 3.52e-04 GGACGAAAAC AAAAGAGA GCGCAACCAA chrX:19637745-19637865 93 3.64e-04 CGGCGTTGTT GGGCGAGA AGTAAAACAC chr3R:22397396-22397516 107 4.40e-04 TAACCGATAA GAACGAGC ACTGCT chr2R:12979785-12979905 45 5.64e-04 GTTGCTAAAT GAAAGAGC AGTAAAAAAA chr3R:23601680-23601800 65 6.32e-04 TTGGGGGTGA GAGTGAAA AGTGGCTCTT chrX:7930785-7930905 4 7.22e-04 AAG AAGCGCGA GCACGCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18923848-18923968 1.4e-05 83_[+1]_29 chrX:5594001-5594121 1.4e-05 68_[+1]_44 chr2R:12904425-12904545 1.4e-05 24_[+1]_88 chr2R:22080338-22080458 1.4e-05 91_[+1]_21 chr3R:5592301-5592421 1.4e-05 79_[+1]_33 chr2R:13941171-13941291 1.4e-05 21_[+1]_91 chr2L:3538679-3538799 1.4e-05 53_[+1]_59 chrX:3162173-3162293 1.4e-05 106_[+1]_6 chrX:17314351-17314471 1.4e-05 4_[+1]_108 chr3R:25080562-25080682 1.4e-05 54_[+1]_58 chrX:15306389-15306509 1.4e-05 31_[+1]_81 chrX:6534222-6534342 1.4e-05 35_[+1]_77 chrX:8560888-8561008 1.4e-05 72_[+1]_40 chr2L:12527739-12527859 1.4e-05 9_[+1]_103 chrX:12716011-12716131 1.4e-05 66_[+1]_46 chr3L:17011869-17011989 1.4e-05 24_[+1]_88 chrX:19496050-19496170 1.4e-05 17_[+1]_95 chr2R:7300817-7300937 1.4e-05 95_[+1]_17 chr3R:7313148-7313268 1.4e-05 14_[+1]_98 chr3R:26797901-26798021 1.4e-05 63_[+1]_49 chr2L:548272-548392 1.4e-05 71_[+1]_41 chr3R:31938079-31938199 1.4e-05 63_[+1]_49 chr3L:5610710-5610830 1.4e-05 58_[+1]_54 chrX:16608000-16608120 1.4e-05 60_[+1]_52 chr3L:12433865-12433985 1.4e-05 19_[+1]_93 chr2R:18973089-18973209 1.4e-05 106_[+1]_6 chr2L:6833708-6833828 2.9e-05 109_[+1]_3 chr3R:6848675-6848795 2.9e-05 13_[+1]_99 chrX:16217422-16217542 2.9e-05 [+1]_112 chr3L:16377972-16378092 2.9e-05 112_[+1] chr2R:15611032-15611152 2.9e-05 7_[+1]_105 chr3L:17964944-17965064 2.9e-05 34_[+1]_78 chrX:11154747-11154867 2.9e-05 81_[+1]_31 chr3R:12279036-12279156 2.9e-05 35_[+1]_77 chrX:3407803-3407923 2.9e-05 35_[+1]_77 chr2R:12884452-12884572 2.9e-05 75_[+1]_37 chr3R:24230868-24230988 2.9e-05 1_[+1]_111 chr2L:11969043-11969163 2.9e-05 30_[+1]_82 chrX:10816994-10817114 2.9e-05 15_[+1]_97 chrX:654432-654552 2.9e-05 76_[+1]_36 chrX:12736241-12736361 4.5e-05 86_[+1]_26 chrX:8757880-8758000 4.5e-05 17_[+1]_95 chr2L:1644495-1644615 4.5e-05 76_[+1]_36 chr2L:1669770-1669890 4.5e-05 5_[+1]_107 chrX:8410395-8410515 6.3e-05 30_[+1]_82 chr2L:6724256-6724376 6.3e-05 55_[+1]_57 chr2L:5421701-5421821 6.3e-05 11_[+1]_101 chrX:17423710-17423830 6.3e-05 93_[+1]_19 chr3R:10546734-10546854 6.3e-05 5_[+1]_107 chr3L:16639199-16639319 6.3e-05 17_[+1]_95 chr3L:3247273-3247393 6.3e-05 41_[+1]_71 chr3L:3069916-3070036 7.7e-05 58_[+1]_54 chr2R:9039529-9039649 7.7e-05 83_[+1]_29 chrX:11325661-11325781 7.7e-05 53_[+1]_59 chr2R:8024493-8024613 0.00011 65_[+1]_47 chr3L:12434543-12434663 0.00011 22_[+1]_90 chr3L:10325215-10325335 0.00011 76_[+1]_36 chr3R:25184578-25184698 0.00011 42_[+1]_70 chr2R:19456623-19456743 0.00011 29_[+1]_83 chrX:9675055-9675175 0.00011 53_[+1]_59 chr2L:18455914-18456034 0.00011 51_[+1]_61 chr3R:13877275-13877395 0.00012 89_[+1]_23 chr3L:19907456-19907576 0.00012 57_[+1]_55 chr2R:17027773-17027893 0.00012 7_[+1]_105 chr2R:23046136-23046256 0.00012 74_[+1]_38 chr3R:16899199-16899319 0.00014 7_[+1]_105 chr2L:2364482-2364602 0.00017 62_[+1]_50 chr2R:14621912-14622032 0.00017 79_[+1]_33 chrX:3861238-3861358 0.00017 99_[+1]_13 chr3R:10133405-10133525 0.00019 26_[+1]_86 chr2L:2993283-2993403 0.00019 96_[+1]_16 chr2L:16485931-16486051 0.00021 3_[+1]_109 chr3R:20253756-20253876 0.00021 60_[+1]_52 chrX:21060743-21060863 0.00021 75_[+1]_37 chr2R:9284444-9284564 0.00027 92_[+1]_20 chr3L:3035394-3035514 0.00027 104_[+1]_8 chr2L:2955732-2955852 0.00027 85_[+1]_27 chr3L:1349834-1349954 0.0003 13_[+1]_99 chr2R:10604202-10604322 0.00033 31_[+1]_81 chr3L:432731-432851 0.00033 45_[+1]_67 chrX:2140673-2140793 0.00035 27_[+1]_85 chrX:21369379-21369499 0.00035 88_[+1]_24 chrX:10474130-10474250 0.00035 60_[+1]_52 chrX:19637745-19637865 0.00036 92_[+1]_20 chr3R:22397396-22397516 0.00044 106_[+1]_6 chr2R:12979785-12979905 0.00056 44_[+1]_68 chr3R:23601680-23601800 0.00063 64_[+1]_48 chrX:7930785-7930905 0.00072 3_[+1]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGMGAGA width=8 seqs=88 chr3R:18923848-18923968 ( 84) GAGCGAGA 1 chrX:5594001-5594121 ( 69) GAGCGAGA 1 chr2R:12904425-12904545 ( 25) GAGCGAGA 1 chr2R:22080338-22080458 ( 92) GAGCGAGA 1 chr3R:5592301-5592421 ( 80) GAGCGAGA 1 chr2R:13941171-13941291 ( 22) GAGCGAGA 1 chr2L:3538679-3538799 ( 54) GAGCGAGA 1 chrX:3162173-3162293 ( 107) GAGCGAGA 1 chrX:17314351-17314471 ( 5) GAGCGAGA 1 chr3R:25080562-25080682 ( 55) GAGCGAGA 1 chrX:15306389-15306509 ( 32) GAGCGAGA 1 chrX:6534222-6534342 ( 36) GAGCGAGA 1 chrX:8560888-8561008 ( 73) GAGCGAGA 1 chr2L:12527739-12527859 ( 10) GAGCGAGA 1 chrX:12716011-12716131 ( 67) GAGCGAGA 1 chr3L:17011869-17011989 ( 25) GAGCGAGA 1 chrX:19496050-19496170 ( 18) GAGCGAGA 1 chr2R:7300817-7300937 ( 96) GAGCGAGA 1 chr3R:7313148-7313268 ( 15) GAGCGAGA 1 chr3R:26797901-26798021 ( 64) GAGCGAGA 1 chr2L:548272-548392 ( 72) GAGCGAGA 1 chr3R:31938079-31938199 ( 64) GAGCGAGA 1 chr3L:5610710-5610830 ( 59) GAGCGAGA 1 chrX:16608000-16608120 ( 61) GAGCGAGA 1 chr3L:12433865-12433985 ( 20) GAGCGAGA 1 chr2R:18973089-18973209 ( 107) GAGCGAGA 1 chr2L:6833708-6833828 ( 110) GAGAGAGA 1 chr3R:6848675-6848795 ( 14) GAGAGAGA 1 chrX:16217422-16217542 ( 1) GAGAGAGA 1 chr3L:16377972-16378092 ( 113) GAGAGAGA 1 chr2R:15611032-15611152 ( 8) GAGAGAGA 1 chr3L:17964944-17965064 ( 35) GAGAGAGA 1 chrX:11154747-11154867 ( 82) GAGAGAGA 1 chr3R:12279036-12279156 ( 36) GAGAGAGA 1 chrX:3407803-3407923 ( 36) GAGAGAGA 1 chr2R:12884452-12884572 ( 76) GAGAGAGA 1 chr3R:24230868-24230988 ( 2) GAGAGAGA 1 chr2L:11969043-11969163 ( 31) GAGAGAGA 1 chrX:10816994-10817114 ( 16) GAGAGAGA 1 chrX:654432-654552 ( 77) GAGAGAGA 1 chrX:12736241-12736361 ( 87) GAACGAGA 1 chrX:8757880-8758000 ( 18) GAACGAGA 1 chr2L:1644495-1644615 ( 77) GAACGAGA 1 chr2L:1669770-1669890 ( 6) GAACGAGA 1 chrX:8410395-8410515 ( 31) GAAAGAGA 1 chr2L:6724256-6724376 ( 56) GAAAGAGA 1 chr2L:5421701-5421821 ( 12) GAAAGAGA 1 chrX:17423710-17423830 ( 94) GAAAGAGA 1 chr3R:10546734-10546854 ( 6) GAAAGAGA 1 chr3L:16639199-16639319 ( 18) GAAAGAGA 1 chr3L:3247273-3247393 ( 42) GAAAGAGA 1 chr3L:3069916-3070036 ( 59) GAGGGAGA 1 chr2R:9039529-9039649 ( 84) GAGGGAGA 1 chrX:11325661-11325781 ( 54) GAGGGAGA 1 chr2R:8024493-8024613 ( 66) GAGTGAGA 1 chr3L:12434543-12434663 ( 23) GAGTGAGA 1 chr3L:10325215-10325335 ( 77) GAGTGAGA 1 chr3R:25184578-25184698 ( 43) AAGCGAGA 1 chr2R:19456623-19456743 ( 30) GAGTGAGA 1 chrX:9675055-9675175 ( 54) AAGCGAGA 1 chr2L:18455914-18456034 ( 52) AAGCGAGA 1 chr3R:13877275-13877395 ( 90) GAGCGGGA 1 chr3L:19907456-19907576 ( 58) GAGCGGGA 1 chr2R:17027773-17027893 ( 8) GAGCGGGA 1 chr2R:23046136-23046256 ( 75) GAGCGGGA 1 chr3R:16899199-16899319 ( 8) AAGAGAGA 1 chr2L:2364482-2364602 ( 63) GAGCGAAA 1 chr2R:14621912-14622032 ( 80) GAGAGGGA 1 chrX:3861238-3861358 ( 100) GAGAGGGA 1 chr3R:10133405-10133525 ( 27) GAGCGCGA 1 chr2L:2993283-2993403 ( 97) GAGCGAGC 1 chr2L:16485931-16486051 ( 4) GAGAGAAA 1 chr3R:20253756-20253876 ( 61) GAGAGAAA 1 chrX:21060743-21060863 ( 76) GAGAGAAA 1 chr2R:9284444-9284564 ( 93) GAAGGAGA 1 chr3L:3035394-3035514 ( 105) GAAGGAGA 1 chr2L:2955732-2955852 ( 86) GAGAGCGA 1 chr3L:1349834-1349954 ( 14) AAACGAGA 1 chr2R:10604202-10604322 ( 32) GACAGAGA 1 chr3L:432731-432851 ( 46) GACAGAGA 1 chrX:2140673-2140793 ( 28) AAAAGAGA 1 chrX:21369379-21369499 ( 89) AAAAGAGA 1 chrX:10474130-10474250 ( 61) AAAAGAGA 1 chrX:19637745-19637865 ( 93) GGGCGAGA 1 chr3R:22397396-22397516 ( 107) GAACGAGC 1 chr2R:12979785-12979905 ( 45) GAAAGAGC 1 chr3R:23601680-23601800 ( 65) GAGTGAAA 1 chrX:7930785-7930905 ( 4) AAGCGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3508 E= 3.4e-047 -140 -1310 194 -1310 187 -1310 -436 -1310 -32 -333 170 -1310 51 113 -204 -223 -1310 -1310 210 -1310 173 -275 -178 -1310 -225 -1310 201 -1310 184 -275 -1310 -1310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 3.4e-047 0.102273 0.000000 0.897727 0.000000 0.988636 0.000000 0.011364 0.000000 0.215909 0.022727 0.761364 0.000000 0.386364 0.500000 0.056818 0.056818 0.000000 0.000000 1.000000 0.000000 0.897727 0.034091 0.068182 0.000000 0.056818 0.000000 0.943182 0.000000 0.965909 0.034091 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 regular expression -------------------------------------------------------------------------------- GA[GA][CA]GAGA -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCKYTC MEME-2 width = 8 sites = 60 llr = 528 E-value = 2.2e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :91a:6:9 probability G ::::4::: matrix T a1a:64a1 bits 2.1 * 1.9 * * 1.7 * ** ** 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 **** *** (12.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12750371-12750491 56 1.40e-05 ATTTACCctc tctctctc actctcattc chr3R:16830175-16830295 60 1.40e-05 GCCGCTGTtc tctctctc tttcccgctc chr3R:15291574-15291694 103 1.40e-05 tcgccccctc tctctctc tcgttctctc chr3L:12627748-12627868 112 1.40e-05 tcttgctctc tctctctc t chrX:8757880-8758000 79 1.40e-05 ctcgcgccgc tctctctc gctctcgctc chr3L:9019402-9019522 74 1.40e-05 tatcactctc tctctctc tctctctTCA chr2R:25061688-25061808 45 1.40e-05 TGCTATGGAG TCTCTCTC GTTTCTGGTT chrX:6013306-6013426 62 1.40e-05 tgccgctctc tctctctc tctcgctATA chrX:1970641-1970761 27 1.40e-05 TCTATGGCCA TCTCTCTC AGTTGGCTTT chr3R:9886562-9886682 26 1.40e-05 TGTCTCGCTC TCTCTCTC TCGCATCCCA chr3R:14326372-14326492 5 1.40e-05 TCTA TCTCTCTC GCTCCACTTT chrX:7320950-7321070 81 1.40e-05 tctctctctc tctctctc tGATCTCTCT chr3L:10325215-10325335 107 1.40e-05 gctcccgctg tctctctc ATTGTG chr3L:12690811-12690931 106 1.40e-05 gcgcactctt tctctctc tttcccg chr3R:10079380-10079500 11 1.40e-05 tcgcactttt tctctctc gctatctctT chr3R:25094746-25094866 81 2.62e-05 AACATTGCCT TCTCGCTC GGCATAGTGA chrX:8806721-8806841 34 2.62e-05 CGTCGCGCCC TCTCGCTC ACACTCGCTG chrX:17789644-17789764 98 2.62e-05 CATTGCACGc tctcgctc gctctctctt chr2L:15499466-15499586 90 2.62e-05 CCATTCACCC TCTCGCTC GCTCTTCCAG chr3R:6848675-6848795 47 2.62e-05 CGCTCCGCCA TCTCGCTC GCTCTCAGGC chrX:20159166-20159286 12 2.62e-05 GCTACGACCC TCTCGCTC GCACTGGTGC chr2L:3538679-3538799 4 2.62e-05 GCC TCTCGCTC GCTCGCAAAA chr2L:1077134-1077254 59 2.62e-05 CGATCGTCGC TCTCGCTC GCTCACTCAT chr3L:3069916-3070036 21 2.62e-05 CAGCTAGACG TCTCGCTC TCGCACAGCT chr2L:868039-868159 51 2.62e-05 TCTAGTGCTT TCTCGCTC CTCTTTGATT chrX:5579617-5579737 48 2.62e-05 CCTCCAGCCC TCTCGCTC GCACTCGTGC chrX:10816994-10817114 39 2.62e-05 AACGCACTGC TCTCGCTC GCTCTTTTTT chrX:22540082-22540202 63 2.62e-05 tcgtttgcgc tctcgctc ACTCCCACTG chrX:9666587-9666707 52 2.62e-05 acactcactc tctcgctc gctctctttc chr3L:12580478-12580598 61 4.25e-05 GCATTCCGTT TCTCTTTC GATGGGGGGA chr2L:8104193-8104313 55 4.25e-05 CTCATCGCCG TCTCTTTC CATCGCATTA chr3L:2823700-2823820 54 4.25e-05 ttgcgccctt tctctttc gctccTGCAG chr2L:3540056-3540176 101 4.25e-05 TGTATCGGCC TCTCTTTC TGCCCGGGCC chr2L:1987487-1987607 40 4.25e-05 CGGCCTGCTG TCTCTTTC CAGCACGCAC chr2R:20831877-20831997 39 4.25e-05 AATCGGCACC TCTCTTTC GCTCGCTTTG chrX:12716011-12716131 109 4.25e-05 AATGCGGCCA TCTCTTTC GTTT chr3L:16639199-16639319 86 4.25e-05 TCACCTtctt tctctttc tctttgcact chrX:7204878-7204998 65 4.25e-05 CGTCTTCCCG TCTCTTTC GCTCACGGTA chrX:3861238-3861358 10 4.25e-05 CTTTACCGC TCTCTTTC GGGACTTGCA chr3L:5179295-5179415 77 4.25e-05 CCACCGTCTG TCTCTTTC TGTGACAGAC chr3R:16403847-16403967 85 5.68e-05 GCTGCAGCTA TCTCGTTC GCACCCTGTA chr2L:12527739-12527859 50 5.68e-05 ACATTGTATC TCTCGTTC TCGCTGCGGT chr2R:9577617-9577737 85 7.31e-05 TTCAATTTGG TTTCTCTC GTTTGGCAAT chr2R:25285545-25285665 42 8.94e-05 gtgaatatat tctctctt cgagaagcgt chr2L:9698819-9698939 8 8.94e-05 TCTGCGA TCTCTCTT CAGCGCTCTC chr2L:6921276-6921396 90 1.04e-04 TCTTGGTTAA TTTCGCTC CTATTTCTCC chr2L:8100106-8100226 34 1.30e-04 TTTCGCCCTG TCCCTCTC TATCTGCCTC chr3R:16453174-16453294 37 1.49e-04 GTAGCTGTAG TTTCTTTC GCTTTACGAA chr3L:17011869-17011989 77 1.49e-04 GCTTTGCACT TTTCTTTC TTGCACTGCT chr2R:21160075-21160195 75 1.49e-04 ATTGCACACG TTTCTTTC AGTACTTTGG chr2L:3789809-3789929 93 1.68e-04 CATCGGCCGC TCTCTTTT CCTCAGCCGT chrX:20159384-20159504 13 1.68e-04 TAGGTGTGTT TCTCTTTT TTTGGCTCCA chrX:4444950-4445070 38 1.68e-04 CGTCGCGCCA TCTCTTTT CCCCCAAGGC chr2L:5732-5852 98 1.68e-04 TCTCATTCAC TCTCTTTT ATTACCGCAA chr2R:12884452-12884572 42 1.78e-04 ACACTAGTTG TCCCGCTC CCACCGCGGT chrX:19640956-19641076 105 1.78e-04 GCTATCCCCG TCCCGCTC CTGGCCAC chr2R:14848240-14848360 97 1.95e-04 TGTTGCTGCC TTTCGTTC TTCTTCTTCT chr2R:19456623-19456743 112 1.95e-04 GTGTCGTCGT TTTCGTTC G chr2R:9039529-9039649 34 2.38e-04 GCTACTGTCA TCTCCCTC CAACACATGC chr2R:7300817-7300937 18 2.87e-04 CATGGCTCTA GCTCGCTC TAACTTGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12750371-12750491 1.4e-05 55_[+2]_57 chr3R:16830175-16830295 1.4e-05 59_[+2]_53 chr3R:15291574-15291694 1.4e-05 102_[+2]_10 chr3L:12627748-12627868 1.4e-05 111_[+2]_1 chrX:8757880-8758000 1.4e-05 78_[+2]_34 chr3L:9019402-9019522 1.4e-05 73_[+2]_39 chr2R:25061688-25061808 1.4e-05 44_[+2]_68 chrX:6013306-6013426 1.4e-05 61_[+2]_51 chrX:1970641-1970761 1.4e-05 26_[+2]_86 chr3R:9886562-9886682 1.4e-05 25_[+2]_87 chr3R:14326372-14326492 1.4e-05 4_[+2]_108 chrX:7320950-7321070 1.4e-05 80_[+2]_32 chr3L:10325215-10325335 1.4e-05 106_[+2]_6 chr3L:12690811-12690931 1.4e-05 105_[+2]_7 chr3R:10079380-10079500 1.4e-05 10_[+2]_102 chr3R:25094746-25094866 2.6e-05 80_[+2]_32 chrX:8806721-8806841 2.6e-05 33_[+2]_79 chrX:17789644-17789764 2.6e-05 97_[+2]_15 chr2L:15499466-15499586 2.6e-05 89_[+2]_23 chr3R:6848675-6848795 2.6e-05 46_[+2]_66 chrX:20159166-20159286 2.6e-05 11_[+2]_101 chr2L:3538679-3538799 2.6e-05 3_[+2]_109 chr2L:1077134-1077254 2.6e-05 58_[+2]_54 chr3L:3069916-3070036 2.6e-05 20_[+2]_92 chr2L:868039-868159 2.6e-05 50_[+2]_62 chrX:5579617-5579737 2.6e-05 47_[+2]_65 chrX:10816994-10817114 2.6e-05 38_[+2]_74 chrX:22540082-22540202 2.6e-05 62_[+2]_50 chrX:9666587-9666707 2.6e-05 51_[+2]_61 chr3L:12580478-12580598 4.3e-05 60_[+2]_52 chr2L:8104193-8104313 4.3e-05 54_[+2]_58 chr3L:2823700-2823820 4.3e-05 53_[+2]_59 chr2L:3540056-3540176 4.3e-05 100_[+2]_12 chr2L:1987487-1987607 4.3e-05 39_[+2]_73 chr2R:20831877-20831997 4.3e-05 38_[+2]_74 chrX:12716011-12716131 4.3e-05 108_[+2]_4 chr3L:16639199-16639319 4.3e-05 85_[+2]_27 chrX:7204878-7204998 4.3e-05 64_[+2]_48 chrX:3861238-3861358 4.3e-05 9_[+2]_103 chr3L:5179295-5179415 4.3e-05 76_[+2]_36 chr3R:16403847-16403967 5.7e-05 84_[+2]_28 chr2L:12527739-12527859 5.7e-05 49_[+2]_63 chr2R:9577617-9577737 7.3e-05 84_[+2]_28 chr2R:25285545-25285665 8.9e-05 41_[+2]_71 chr2L:9698819-9698939 8.9e-05 7_[+2]_105 chr2L:6921276-6921396 0.0001 89_[+2]_23 chr2L:8100106-8100226 0.00013 33_[+2]_79 chr3R:16453174-16453294 0.00015 36_[+2]_76 chr3L:17011869-17011989 0.00015 76_[+2]_36 chr2R:21160075-21160195 0.00015 74_[+2]_38 chr2L:3789809-3789929 0.00017 92_[+2]_20 chrX:20159384-20159504 0.00017 12_[+2]_100 chrX:4444950-4445070 0.00017 37_[+2]_75 chr2L:5732-5852 0.00017 97_[+2]_15 chr2R:12884452-12884572 0.00018 41_[+2]_71 chrX:19640956-19641076 0.00018 104_[+2]_8 chr2R:14848240-14848360 0.0002 96_[+2]_16 chr2R:19456623-19456743 0.0002 111_[+2]_1 chr2R:9039529-9039649 0.00024 33_[+2]_79 chr2R:7300817-7300937 0.00029 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCKYTC width=8 seqs=60 chrX:12750371-12750491 ( 56) TCTCTCTC 1 chr3R:16830175-16830295 ( 60) TCTCTCTC 1 chr3R:15291574-15291694 ( 103) TCTCTCTC 1 chr3L:12627748-12627868 ( 112) TCTCTCTC 1 chrX:8757880-8758000 ( 79) TCTCTCTC 1 chr3L:9019402-9019522 ( 74) TCTCTCTC 1 chr2R:25061688-25061808 ( 45) TCTCTCTC 1 chrX:6013306-6013426 ( 62) TCTCTCTC 1 chrX:1970641-1970761 ( 27) TCTCTCTC 1 chr3R:9886562-9886682 ( 26) TCTCTCTC 1 chr3R:14326372-14326492 ( 5) TCTCTCTC 1 chrX:7320950-7321070 ( 81) TCTCTCTC 1 chr3L:10325215-10325335 ( 107) TCTCTCTC 1 chr3L:12690811-12690931 ( 106) TCTCTCTC 1 chr3R:10079380-10079500 ( 11) TCTCTCTC 1 chr3R:25094746-25094866 ( 81) TCTCGCTC 1 chrX:8806721-8806841 ( 34) TCTCGCTC 1 chrX:17789644-17789764 ( 98) TCTCGCTC 1 chr2L:15499466-15499586 ( 90) TCTCGCTC 1 chr3R:6848675-6848795 ( 47) TCTCGCTC 1 chrX:20159166-20159286 ( 12) TCTCGCTC 1 chr2L:3538679-3538799 ( 4) TCTCGCTC 1 chr2L:1077134-1077254 ( 59) TCTCGCTC 1 chr3L:3069916-3070036 ( 21) TCTCGCTC 1 chr2L:868039-868159 ( 51) TCTCGCTC 1 chrX:5579617-5579737 ( 48) TCTCGCTC 1 chrX:10816994-10817114 ( 39) TCTCGCTC 1 chrX:22540082-22540202 ( 63) TCTCGCTC 1 chrX:9666587-9666707 ( 52) TCTCGCTC 1 chr3L:12580478-12580598 ( 61) TCTCTTTC 1 chr2L:8104193-8104313 ( 55) TCTCTTTC 1 chr3L:2823700-2823820 ( 54) TCTCTTTC 1 chr2L:3540056-3540176 ( 101) TCTCTTTC 1 chr2L:1987487-1987607 ( 40) TCTCTTTC 1 chr2R:20831877-20831997 ( 39) TCTCTTTC 1 chrX:12716011-12716131 ( 109) TCTCTTTC 1 chr3L:16639199-16639319 ( 86) TCTCTTTC 1 chrX:7204878-7204998 ( 65) TCTCTTTC 1 chrX:3861238-3861358 ( 10) TCTCTTTC 1 chr3L:5179295-5179415 ( 77) TCTCTTTC 1 chr3R:16403847-16403967 ( 85) TCTCGTTC 1 chr2L:12527739-12527859 ( 50) TCTCGTTC 1 chr2R:9577617-9577737 ( 85) TTTCTCTC 1 chr2R:25285545-25285665 ( 42) TCTCTCTT 1 chr2L:9698819-9698939 ( 8) TCTCTCTT 1 chr2L:6921276-6921396 ( 90) TTTCGCTC 1 chr2L:8100106-8100226 ( 34) TCCCTCTC 1 chr3R:16453174-16453294 ( 37) TTTCTTTC 1 chr3L:17011869-17011989 ( 77) TTTCTTTC 1 chr2R:21160075-21160195 ( 75) TTTCTTTC 1 chr2L:3789809-3789929 ( 93) TCTCTTTT 1 chrX:20159384-20159504 ( 13) TCTCTTTT 1 chrX:4444950-4445070 ( 38) TCTCTTTT 1 chr2L:5732-5852 ( 98) TCTCTTTT 1 chr2R:12884452-12884572 ( 42) TCCCGCTC 1 chrX:19640956-19641076 ( 105) TCCCGCTC 1 chr2R:14848240-14848360 ( 97) TTTCGTTC 1 chr2R:19456623-19456743 ( 112) TTTCGTTC 1 chr2R:9039529-9039649 ( 34) TCTCCCTC 1 chr2R:7300817-7300937 ( 18) GCTCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1524 E= 2.2e-029 -1255 -1255 -381 188 -1255 195 -1255 -119 -1255 -219 -1255 183 -1255 213 -1255 -1255 -1255 -378 65 121 -1255 147 -1255 46 -1255 -1255 -1255 191 -1255 197 -1255 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 2.2e-029 0.000000 0.000000 0.016667 0.983333 0.000000 0.883333 0.000000 0.116667 0.000000 0.050000 0.000000 0.950000 0.000000 1.000000 0.000000 0.000000 0.000000 0.016667 0.366667 0.616667 0.000000 0.633333 0.000000 0.366667 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTC MEME-2 regular expression -------------------------------------------------------------------------------- TCTC[TG][CT]TC -------------------------------------------------------------------------------- Time 13.64 secs. ******************************************************************************** ******************************************************************************** MOTIF TGYKTGTG MEME-3 width = 8 sites = 56 llr = 460 E-value = 1.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C ::4:1:1: probability G :9:6:8:a matrix T a163929: bits 2.1 1.9 * * 1.7 ** * * 1.5 ** * ** Relative 1.3 ** **** Entropy 1.1 *** **** (11.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1891117-1891237 101 1.52e-05 ACTATGAAAA TGTGTGTG GTATGTGTAT chr3L:3035394-3035514 68 1.52e-05 tgtgggcatt tgtgtgtg tgtctgttgt chr3R:14326372-14326492 81 1.52e-05 caagtgtgtg tgtgtgtg tTAGCCACTC chr2R:13957120-13957240 83 1.52e-05 GACTTTGGTG TGTGTGTG CGCTTTTATC chrX:10211802-10211922 50 1.52e-05 AAGTCAGCTG TGTGTGTG AGGAATGAAC chr3R:29206861-29206981 73 1.52e-05 cgagtgtgag tgtgtgtg tgtgtttatg chr2L:14020609-14020729 24 1.52e-05 AGTTTTTTTT TGTGTGTG CATCGTGCCG chrX:8905751-8905871 112 1.52e-05 ACGAGTAATT TGTGTGTG A chr2R:19456623-19456743 97 1.52e-05 TGCATTTCGT TGTGTGTG TCGTCGTTTT chrX:17077570-17077690 35 1.52e-05 tctgtgcatg tgtgtgtg gtgTCGCTTG chr2R:14965806-14965926 3 1.52e-05 tg tgtgtgtg tatgtgtgtg chrX:17077296-17077416 40 1.52e-05 gtggcatgtg tgtgtgtg tgcttttcgt chr2R:11228642-11228762 108 1.52e-05 agagtgtgtg tgtgtgtg cgatt chr3R:28889422-28889542 105 2.83e-05 tgtgaatgtg tgcgtgtg cgtgCCAG chrX:19697356-19697476 29 2.83e-05 tgccgcagtg tgcgtgtg tgATAAATAA chr3L:15104648-15104768 9 2.83e-05 tgttggtg tgcgtgtg CTGGATAGCC chr3R:23601680-23601800 44 2.83e-05 AAAGCTCGCA TGCGTGTG CTTTTGGGGG chr2L:6724256-6724376 109 2.83e-05 gtgtatgccg tgcgtgtg cccc chr3L:10325215-10325335 11 2.83e-05 tttgagtgtt tgcgtgtg tgcgagtatc chr3R:31938079-31938199 11 2.83e-05 GCATGCGCCA TGCGTGTG CGCCACCCAA chrX:19851232-19851352 34 4.57e-05 TTTCAGTCAC TGTTTGTG TCTTGTTCCt chr2R:10604202-10604322 101 4.57e-05 tgtgtgcgct tgtttgtg tcgctgtgag chr2R:14504201-14504321 41 4.57e-05 GTAGCTGCTT TGTTTGTG TGTTTGGCAT chrX:16943586-16943706 59 4.57e-05 TGGGCCGAAA TGTTTGTG GAAATGTGTC chrX:12018959-12019079 88 4.57e-05 TCACCATCGC TGTTTGTG AAACGTTGTT chr3L:3247273-3247393 77 4.57e-05 CCGCCCTGCA TGTTTGTG CGCTTTTTGT chr2R:17028112-17028232 89 6.06e-05 GGAATTTTCC TGCTTGTG TGTCCGCTCT chr3L:432731-432851 33 6.06e-05 TAGATATGGC TGCTTGTG TGTTAGACAG chrX:12753210-12753330 15 7.80e-05 GTTTGATATC TGTGTTTG TCTCGAATTG chr3R:13877275-13877395 18 1.06e-04 AAGCAGTATC TGTGTGCG AGAGAACGGG chr2R:13941171-13941291 53 1.06e-04 AGAGAGCGAT TGCGTTTG CGGCGGCGGT chrX:4930552-4930672 73 1.06e-04 TGTTTGGCTC TGTGTGCG TGAGGATGCA chr2R:12173008-12173128 86 1.06e-04 CTATTATGCC TGTGTGCG TGCGTTTGTA chrX:21369379-21369499 46 1.06e-04 TAGCTTTATT TGTGTGCG ATTTATTTTT chrX:2634528-2634648 1 1.06e-04 . TGCGTTTG AATTGCTAAG chr3R:24234077-24234197 54 1.26e-04 TAGCTGCTGT TGTTTTTG TTGTTGCAGC chrX:20159166-20159286 112 1.26e-04 ctgttgctga tgtttttg t chr3L:9854562-9854682 69 1.26e-04 ATATTTTTGA TGTTTTTG AACGATTTCG chr2L:1077134-1077254 79 1.26e-04 TCACTCATGG TGTTTTTG TGTGGAAAAT chr3L:10898508-10898628 110 1.26e-04 TATTGCATGT TGTTTTTG TTT chr2R:12592330-12592450 16 1.26e-04 TACTAAGTGA TGTTTTTG TTTTTAAGTC chr3R:11353581-11353701 79 1.87e-04 ACTGCGATGG TGTATGTG TGCCATCAAG chrX:20159384-20159504 44 1.87e-04 GTACAATTGT TGCTTTTG CTTTAACAGC chr2R:21160075-21160195 96 1.87e-04 ACTTTGGGCA TGCTTTTG GCATTTTCAT chrX:12716011-12716131 84 2.00e-04 agagagctag tgtgcgtg cgaACCGAAT chrX:9675055-9675175 45 2.00e-04 AATGTAAAGG TGTGCGTG CAAGCGAGAT chr2L:2955732-2955852 20 2.27e-04 AGTGAGTGCA TGCATGTG GGTTGCTGTT chr3L:12690811-12690931 41 2.27e-04 CTCCCGCTTT TGCTTGCG GCCATTTGGG chr3R:26103586-26103706 79 2.27e-04 TCAAATCAAC TGCTTGCG TACTGCTTGA chrX:10858006-10858126 73 2.27e-04 GGGTTGGCGA TGCATGTG TATAACATTT chr3R:7753714-7753834 48 2.27e-04 GGGGATATAT TGCTTGCG CTGCGAAAAC chr2R:21634896-21635016 5 2.45e-04 GCGA TTTGTGTG ACGCGGCCAT chr2R:8024493-8024613 83 2.56e-04 ATGGCAGCAC TGCGCGTG GGAACGGGAC chrX:13128367-13128487 91 3.01e-04 TTTTGTTATT TTCGTGTG CAACAATTTG chr3L:5179295-5179415 109 3.98e-04 AGTGCAGAAG TGTGTGTC CCTC chr3L:3069916-3070036 101 5.10e-04 GCTGCCACGA TTTGTTTG TATACAGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1891117-1891237 1.5e-05 100_[+3]_12 chr3L:3035394-3035514 1.5e-05 67_[+3]_45 chr3R:14326372-14326492 1.5e-05 80_[+3]_32 chr2R:13957120-13957240 1.5e-05 82_[+3]_30 chrX:10211802-10211922 1.5e-05 49_[+3]_63 chr3R:29206861-29206981 1.5e-05 72_[+3]_40 chr2L:14020609-14020729 1.5e-05 23_[+3]_89 chrX:8905751-8905871 1.5e-05 111_[+3]_1 chr2R:19456623-19456743 1.5e-05 96_[+3]_16 chrX:17077570-17077690 1.5e-05 34_[+3]_78 chr2R:14965806-14965926 1.5e-05 2_[+3]_110 chrX:17077296-17077416 1.5e-05 39_[+3]_73 chr2R:11228642-11228762 1.5e-05 107_[+3]_5 chr3R:28889422-28889542 2.8e-05 104_[+3]_8 chrX:19697356-19697476 2.8e-05 28_[+3]_84 chr3L:15104648-15104768 2.8e-05 8_[+3]_104 chr3R:23601680-23601800 2.8e-05 43_[+3]_69 chr2L:6724256-6724376 2.8e-05 108_[+3]_4 chr3L:10325215-10325335 2.8e-05 10_[+3]_102 chr3R:31938079-31938199 2.8e-05 10_[+3]_102 chrX:19851232-19851352 4.6e-05 33_[+3]_79 chr2R:10604202-10604322 4.6e-05 100_[+3]_12 chr2R:14504201-14504321 4.6e-05 40_[+3]_72 chrX:16943586-16943706 4.6e-05 58_[+3]_54 chrX:12018959-12019079 4.6e-05 87_[+3]_25 chr3L:3247273-3247393 4.6e-05 76_[+3]_36 chr2R:17028112-17028232 6.1e-05 88_[+3]_24 chr3L:432731-432851 6.1e-05 32_[+3]_80 chrX:12753210-12753330 7.8e-05 14_[+3]_98 chr3R:13877275-13877395 0.00011 17_[+3]_95 chr2R:13941171-13941291 0.00011 52_[+3]_60 chrX:4930552-4930672 0.00011 72_[+3]_40 chr2R:12173008-12173128 0.00011 85_[+3]_27 chrX:21369379-21369499 0.00011 45_[+3]_67 chrX:2634528-2634648 0.00011 [+3]_112 chr3R:24234077-24234197 0.00013 53_[+3]_59 chrX:20159166-20159286 0.00013 111_[+3]_1 chr3L:9854562-9854682 0.00013 68_[+3]_44 chr2L:1077134-1077254 0.00013 78_[+3]_34 chr3L:10898508-10898628 0.00013 109_[+3]_3 chr2R:12592330-12592450 0.00013 15_[+3]_97 chr3R:11353581-11353701 0.00019 78_[+3]_34 chrX:20159384-20159504 0.00019 43_[+3]_69 chr2R:21160075-21160195 0.00019 95_[+3]_17 chrX:12716011-12716131 0.0002 83_[+3]_29 chrX:9675055-9675175 0.0002 44_[+3]_68 chr2L:2955732-2955852 0.00023 19_[+3]_93 chr3L:12690811-12690931 0.00023 40_[+3]_72 chr3R:26103586-26103706 0.00023 78_[+3]_34 chrX:10858006-10858126 0.00023 72_[+3]_40 chr3R:7753714-7753834 0.00023 47_[+3]_65 chr2R:21634896-21635016 0.00024 4_[+3]_108 chr2R:8024493-8024613 0.00026 82_[+3]_30 chrX:13128367-13128487 0.0003 90_[+3]_22 chr3L:5179295-5179415 0.0004 108_[+3]_4 chr3L:3069916-3070036 0.00051 100_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGYKTGTG width=8 seqs=56 chr3L:1891117-1891237 ( 101) TGTGTGTG 1 chr3L:3035394-3035514 ( 68) TGTGTGTG 1 chr3R:14326372-14326492 ( 81) TGTGTGTG 1 chr2R:13957120-13957240 ( 83) TGTGTGTG 1 chrX:10211802-10211922 ( 50) TGTGTGTG 1 chr3R:29206861-29206981 ( 73) TGTGTGTG 1 chr2L:14020609-14020729 ( 24) TGTGTGTG 1 chrX:8905751-8905871 ( 112) TGTGTGTG 1 chr2R:19456623-19456743 ( 97) TGTGTGTG 1 chrX:17077570-17077690 ( 35) TGTGTGTG 1 chr2R:14965806-14965926 ( 3) TGTGTGTG 1 chrX:17077296-17077416 ( 40) TGTGTGTG 1 chr2R:11228642-11228762 ( 108) TGTGTGTG 1 chr3R:28889422-28889542 ( 105) TGCGTGTG 1 chrX:19697356-19697476 ( 29) TGCGTGTG 1 chr3L:15104648-15104768 ( 9) TGCGTGTG 1 chr3R:23601680-23601800 ( 44) TGCGTGTG 1 chr2L:6724256-6724376 ( 109) TGCGTGTG 1 chr3L:10325215-10325335 ( 11) TGCGTGTG 1 chr3R:31938079-31938199 ( 11) TGCGTGTG 1 chrX:19851232-19851352 ( 34) TGTTTGTG 1 chr2R:10604202-10604322 ( 101) TGTTTGTG 1 chr2R:14504201-14504321 ( 41) TGTTTGTG 1 chrX:16943586-16943706 ( 59) TGTTTGTG 1 chrX:12018959-12019079 ( 88) TGTTTGTG 1 chr3L:3247273-3247393 ( 77) TGTTTGTG 1 chr2R:17028112-17028232 ( 89) TGCTTGTG 1 chr3L:432731-432851 ( 33) TGCTTGTG 1 chrX:12753210-12753330 ( 15) TGTGTTTG 1 chr3R:13877275-13877395 ( 18) TGTGTGCG 1 chr2R:13941171-13941291 ( 53) TGCGTTTG 1 chrX:4930552-4930672 ( 73) TGTGTGCG 1 chr2R:12173008-12173128 ( 86) TGTGTGCG 1 chrX:21369379-21369499 ( 46) TGTGTGCG 1 chrX:2634528-2634648 ( 1) TGCGTTTG 1 chr3R:24234077-24234197 ( 54) TGTTTTTG 1 chrX:20159166-20159286 ( 112) TGTTTTTG 1 chr3L:9854562-9854682 ( 69) TGTTTTTG 1 chr2L:1077134-1077254 ( 79) TGTTTTTG 1 chr3L:10898508-10898628 ( 110) TGTTTTTG 1 chr2R:12592330-12592450 ( 16) TGTTTTTG 1 chr3R:11353581-11353701 ( 79) TGTATGTG 1 chrX:20159384-20159504 ( 44) TGCTTTTG 1 chr2R:21160075-21160195 ( 96) TGCTTTTG 1 chrX:12716011-12716131 ( 84) TGTGCGTG 1 chrX:9675055-9675175 ( 45) TGTGCGTG 1 chr2L:2955732-2955852 ( 20) TGCATGTG 1 chr3L:12690811-12690931 ( 41) TGCTTGCG 1 chr3R:26103586-26103706 ( 79) TGCTTGCG 1 chrX:10858006-10858126 ( 73) TGCATGTG 1 chr3R:7753714-7753834 ( 48) TGCTTGCG 1 chr2R:21634896-21635016 ( 5) TTTGTGTG 1 chr2R:8024493-8024613 ( 83) TGCGCGTG 1 chrX:13128367-13128487 ( 91) TTCGTGTG 1 chr3L:5179295-5179415 ( 109) TGTGTGTC 1 chr3L:3069916-3070036 ( 101) TTTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1998 E= 1.4e-010 -1245 -1245 -1245 191 -1245 -1245 202 -231 -1245 64 -1245 127 -233 -1245 138 35 -1245 -210 -1245 183 -1245 -1245 175 -32 -1245 -87 -1245 171 -1245 -368 207 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.4e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.946429 0.053571 0.000000 0.357143 0.000000 0.642857 0.053571 0.000000 0.607143 0.339286 0.000000 0.053571 0.000000 0.946429 0.000000 0.000000 0.785714 0.214286 0.000000 0.125000 0.000000 0.875000 0.000000 0.017857 0.982143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYKTGTG MEME-3 regular expression -------------------------------------------------------------------------------- TG[TC][GT]T[GT]TG -------------------------------------------------------------------------------- Time 19.71 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAMAA MEME-4 width = 8 sites = 66 llr = 525 E-value = 1.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a978a4a8 pos.-specific C :132:6:2 probability G :::::::: matrix T :::::::: bits 2.1 1.9 * * 1.7 * * * 1.5 * * * Relative 1.3 ** ** ** Entropy 1.1 ******** (11.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAACAA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8024493-8024613 36 2.40e-05 GAATTACTCG AAAAACAA AGGCAATCAA chr3R:24234077-24234197 99 2.40e-05 CAAACACTTA aaaaacaa taataaataa chr2L:2038005-2038125 62 2.40e-05 AGAAATTGCT AAAAACAA AAAGGAACGC chr3L:14562754-14562874 10 2.40e-05 TCTAATAAA AAAAACAA TGCATGAAAA chrX:6013306-6013426 91 2.40e-05 CTATAATTTG AAAAACAA ACAAAAACAT chr2R:12173008-12173128 26 2.40e-05 CTTGCCGCAC AAAAACAA CGCGAAACTG chrX:13089984-13090104 108 2.40e-05 GGGGGGGCAC AAAAACAA AATCG chr3R:31405618-31405738 24 2.40e-05 AATTGAAAAG AAAAACAA AAAATCAAAG chrX:2643132-2643252 8 2.40e-05 AAACGCg aaaaacaa aagaaaaacg chrX:2158200-2158320 20 2.40e-05 GCAAAGGCCG AAAAACAA ACAATTTGTT chr3R:6383277-6383397 112 2.40e-05 GGCGCCTAAA AAAAACAA C chrX:19496050-19496170 69 2.40e-05 CTGCAACAAG AAAAACAA TAACATTCTG chr3R:27736716-27736836 25 2.40e-05 TCGAAAAAAA AAAAACAA AACAAACTCT chrX:10472978-10473098 5 7.25e-05 CGAC AACAACAA AGGCCGGCAT chrX:8056861-8056981 51 7.25e-05 GTAAACCTTA AAAAAAAA GCCTTCAATA chr2L:7038238-7038358 5 7.25e-05 GAGA AAAAAAAA TGGCAAACAC chrX:3407803-3407923 26 7.25e-05 GCAATGAACC AACAACAA CAGAGAGAGA chrX:13128367-13128487 58 7.25e-05 ataaaacaca aaaaaaaA TGAGTCGCAC chr2L:2886269-2886389 49 7.25e-05 caacaatcac aacaacaa caaACAGTAA chrX:21060743-21060863 53 7.25e-05 GCGCGTAAGC AACAACAA ACGAATTAGG chr2R:12979785-12979905 57 7.25e-05 AAGAGCAGTA AAAAAAAA TCAGTCACAC chr3R:10546734-10546854 84 7.25e-05 GCTAAAAGCG AAAAAAAA GTGCAGAAAC chrX:21369379-21369499 26 7.25e-05 CATAATAATG AAAAAAAA TATAGCTTTA chr3R:26797901-26798021 110 7.25e-05 ATTGGCACAC AACAACAA CAG chrX:9666587-9666707 113 7.25e-05 GTGAGGTTTA AAAAAAAA chr2R:16221328-16221448 27 7.25e-05 AAGCAGCAGC AACAACAA CTACAGAACG chrX:11325661-11325781 89 7.25e-05 GATCAGTGac aacaacaa taacatcaat chr3R:31938079-31938199 94 7.25e-05 CGAGAGTACC AAAAAAAA AGGCCAAAAC chrX:9109865-9109985 11 7.25e-05 ATTCATTAAC AAAAAAAA CGTAACGCCG chr2L:19142244-19142364 71 7.25e-05 caacaacatc aacaacaa caGAGAGAAC chr2R:14526874-14526994 3 7.25e-05 AT AACAACAA ATTCTGGCCA chr2R:14790746-14790866 70 7.25e-05 CGCCAGCGAC AACAACAA TAACCATTTG chrX:16586516-16586636 102 7.25e-05 ACACACAACA AAAAAAAA CATTTCACGT chr2L:18455914-18456034 8 7.25e-05 AAAAATG AAAAAAAA CGATGTCTGG chrX:7930785-7930905 32 1.17e-04 ATTTAGTTAG AAAAACAC TTTTAAAAAG chr2R:19424441-19424561 46 1.17e-04 CTTGACCACA AACAAAAA ACGCCTTTTT chr3L:10898508-10898628 16 1.17e-04 GAAAATATAC AACAAAAA GTCAAAAACG chrX:17651869-17651989 89 1.17e-04 TGCAGAAAAG AAAAACAC TGTTGCCGCA chr2R:14621912-14622032 55 1.17e-04 TAGAATGTGA AAAAACAC GTGGCGAGCG chrX:18137453-18137573 29 1.17e-04 TTTCCAAAGA AAAAACAC TAGCTTATTG chrX:636764-636884 33 1.17e-04 ACGCCAGCCA AACAAAAA GATAAATTGC chr3L:9854359-9854479 8 1.17e-04 CTAGAAC AAAAACAC ATTTGTTTTC chrX:18864220-18864340 6 1.37e-04 cagac aaacacaa cgcgcagcgc chr2R:12904425-12904545 82 1.57e-04 CGCACAAGGC ACAAACAA TTCATTTCAG chr3L:10898253-10898373 64 1.57e-04 CGAAAAGTGC ACAAACAA AATCTAAAGA chrX:10473882-10474002 58 1.57e-04 CGTATTTTCT ACAAACAA AATCACAGAT chr3R:25094746-25094866 1 1.99e-04 . AACAACAC CTTCGATTCC chr3L:8442050-8442170 14 1.99e-04 AGTTGGTAGC AAAAAAAC GAATTTTCAT chr3R:31060730-31060850 68 1.99e-04 GACTCTTATT AAAAAAAC CAAACTTATG chr3L:15104648-15104768 63 1.99e-04 AAGCAAAAGC AACAACAC GGGGAGCCAG chrX:8410395-8410515 12 2.40e-04 AAAACATAAG AACCACAA AAGCAGCAGC chr3R:21860093-21860213 77 2.40e-04 GCCTTGCCCA AAACAAAA CATTAAATGG chrX:19640956-19641076 55 2.40e-04 CGAGGTGTGT AAACAAAA GTCGAGAAAA chr2R:22080338-22080458 33 2.81e-04 CATAGAATGC ACAAAAAA TGTTTATCAG chrX:15306389-15306509 14 2.81e-04 CCAATATAAC ACCAACAA CCAGCAGACA chr3R:26103586-26103706 59 2.81e-04 GCAGGTCGCC ACAAAAAA GTTCAAATCA chr2L:2955732-2955852 60 3.01e-04 TGCAAGCAGC AACAAAAC AAACCGCATA chrX:12736241-12736361 22 3.39e-04 TTCCCCAGAG AACCAAAA GTGCCTGCAC chrX:6694530-6694650 92 3.39e-04 acgcactgct aaacacac acacacacac chr3L:17011869-17011989 54 3.39e-04 GCACAATCAA AACCAAAA CTTTCGCTTT chr3R:15291574-15291694 2 4.49e-04 C AAACAAAC GACTGCGTGA chr2R:22297920-22298040 110 4.49e-04 AAATACGACT GAAAACAA GCA chrX:21351281-21351401 17 4.49e-04 TAAAGAATAA GAAAACAA TGAAATCGGT chrX:655519-655639 111 4.84e-04 CCTTTGTTCC ACAAAAAC TT chr2L:6724256-6724376 34 5.19e-04 ACACCTAGGC ACACAAAA TATGCCAGTT chrX:16608000-16608120 49 5.19e-04 AAGGGTTGTC ACCCACAA ATGCGAGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8024493-8024613 2.4e-05 35_[+4]_77 chr3R:24234077-24234197 2.4e-05 98_[+4]_14 chr2L:2038005-2038125 2.4e-05 61_[+4]_51 chr3L:14562754-14562874 2.4e-05 9_[+4]_103 chrX:6013306-6013426 2.4e-05 90_[+4]_22 chr2R:12173008-12173128 2.4e-05 25_[+4]_87 chrX:13089984-13090104 2.4e-05 107_[+4]_5 chr3R:31405618-31405738 2.4e-05 23_[+4]_89 chrX:2643132-2643252 2.4e-05 7_[+4]_105 chrX:2158200-2158320 2.4e-05 19_[+4]_93 chr3R:6383277-6383397 2.4e-05 111_[+4]_1 chrX:19496050-19496170 2.4e-05 68_[+4]_44 chr3R:27736716-27736836 2.4e-05 24_[+4]_88 chrX:10472978-10473098 7.3e-05 4_[+4]_108 chrX:8056861-8056981 7.3e-05 50_[+4]_62 chr2L:7038238-7038358 7.3e-05 4_[+4]_108 chrX:3407803-3407923 7.3e-05 25_[+4]_87 chrX:13128367-13128487 7.3e-05 57_[+4]_55 chr2L:2886269-2886389 7.3e-05 48_[+4]_64 chrX:21060743-21060863 7.3e-05 52_[+4]_60 chr2R:12979785-12979905 7.3e-05 56_[+4]_56 chr3R:10546734-10546854 7.3e-05 83_[+4]_29 chrX:21369379-21369499 7.3e-05 25_[+4]_87 chr3R:26797901-26798021 7.3e-05 109_[+4]_3 chrX:9666587-9666707 7.3e-05 112_[+4] chr2R:16221328-16221448 7.3e-05 26_[+4]_86 chrX:11325661-11325781 7.3e-05 88_[+4]_24 chr3R:31938079-31938199 7.3e-05 93_[+4]_19 chrX:9109865-9109985 7.3e-05 10_[+4]_102 chr2L:19142244-19142364 7.3e-05 70_[+4]_42 chr2R:14526874-14526994 7.3e-05 2_[+4]_110 chr2R:14790746-14790866 7.3e-05 69_[+4]_43 chrX:16586516-16586636 7.3e-05 101_[+4]_11 chr2L:18455914-18456034 7.3e-05 7_[+4]_105 chrX:7930785-7930905 0.00012 31_[+4]_81 chr2R:19424441-19424561 0.00012 45_[+4]_67 chr3L:10898508-10898628 0.00012 15_[+4]_97 chrX:17651869-17651989 0.00012 88_[+4]_24 chr2R:14621912-14622032 0.00012 54_[+4]_58 chrX:18137453-18137573 0.00012 28_[+4]_84 chrX:636764-636884 0.00012 32_[+4]_80 chr3L:9854359-9854479 0.00012 7_[+4]_105 chrX:18864220-18864340 0.00014 5_[+4]_107 chr2R:12904425-12904545 0.00016 81_[+4]_31 chr3L:10898253-10898373 0.00016 63_[+4]_49 chrX:10473882-10474002 0.00016 57_[+4]_55 chr3R:25094746-25094866 0.0002 [+4]_112 chr3L:8442050-8442170 0.0002 13_[+4]_99 chr3R:31060730-31060850 0.0002 67_[+4]_45 chr3L:15104648-15104768 0.0002 62_[+4]_50 chrX:8410395-8410515 0.00024 11_[+4]_101 chr3R:21860093-21860213 0.00024 76_[+4]_36 chrX:19640956-19641076 0.00024 54_[+4]_58 chr2R:22080338-22080458 0.00028 32_[+4]_80 chrX:15306389-15306509 0.00028 13_[+4]_99 chr3R:26103586-26103706 0.00028 58_[+4]_54 chr2L:2955732-2955852 0.0003 59_[+4]_53 chrX:12736241-12736361 0.00034 21_[+4]_91 chrX:6694530-6694650 0.00034 91_[+4]_21 chr3L:17011869-17011989 0.00034 53_[+4]_59 chr3R:15291574-15291694 0.00045 1_[+4]_111 chr2R:22297920-22298040 0.00045 109_[+4]_3 chrX:21351281-21351401 0.00045 16_[+4]_96 chrX:655519-655639 0.00048 110_[+4]_2 chr2L:6724256-6724376 0.00052 33_[+4]_79 chrX:16608000-16608120 0.00052 48_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAMAA width=8 seqs=66 chr2R:8024493-8024613 ( 36) AAAAACAA 1 chr3R:24234077-24234197 ( 99) AAAAACAA 1 chr2L:2038005-2038125 ( 62) AAAAACAA 1 chr3L:14562754-14562874 ( 10) AAAAACAA 1 chrX:6013306-6013426 ( 91) AAAAACAA 1 chr2R:12173008-12173128 ( 26) AAAAACAA 1 chrX:13089984-13090104 ( 108) AAAAACAA 1 chr3R:31405618-31405738 ( 24) AAAAACAA 1 chrX:2643132-2643252 ( 8) AAAAACAA 1 chrX:2158200-2158320 ( 20) AAAAACAA 1 chr3R:6383277-6383397 ( 112) AAAAACAA 1 chrX:19496050-19496170 ( 69) AAAAACAA 1 chr3R:27736716-27736836 ( 25) AAAAACAA 1 chrX:10472978-10473098 ( 5) AACAACAA 1 chrX:8056861-8056981 ( 51) AAAAAAAA 1 chr2L:7038238-7038358 ( 5) AAAAAAAA 1 chrX:3407803-3407923 ( 26) AACAACAA 1 chrX:13128367-13128487 ( 58) AAAAAAAA 1 chr2L:2886269-2886389 ( 49) AACAACAA 1 chrX:21060743-21060863 ( 53) AACAACAA 1 chr2R:12979785-12979905 ( 57) AAAAAAAA 1 chr3R:10546734-10546854 ( 84) AAAAAAAA 1 chrX:21369379-21369499 ( 26) AAAAAAAA 1 chr3R:26797901-26798021 ( 110) AACAACAA 1 chrX:9666587-9666707 ( 113) AAAAAAAA 1 chr2R:16221328-16221448 ( 27) AACAACAA 1 chrX:11325661-11325781 ( 89) AACAACAA 1 chr3R:31938079-31938199 ( 94) AAAAAAAA 1 chrX:9109865-9109985 ( 11) AAAAAAAA 1 chr2L:19142244-19142364 ( 71) AACAACAA 1 chr2R:14526874-14526994 ( 3) AACAACAA 1 chr2R:14790746-14790866 ( 70) AACAACAA 1 chrX:16586516-16586636 ( 102) AAAAAAAA 1 chr2L:18455914-18456034 ( 8) AAAAAAAA 1 chrX:7930785-7930905 ( 32) AAAAACAC 1 chr2R:19424441-19424561 ( 46) AACAAAAA 1 chr3L:10898508-10898628 ( 16) AACAAAAA 1 chrX:17651869-17651989 ( 89) AAAAACAC 1 chr2R:14621912-14622032 ( 55) AAAAACAC 1 chrX:18137453-18137573 ( 29) AAAAACAC 1 chrX:636764-636884 ( 33) AACAAAAA 1 chr3L:9854359-9854479 ( 8) AAAAACAC 1 chrX:18864220-18864340 ( 6) AAACACAA 1 chr2R:12904425-12904545 ( 82) ACAAACAA 1 chr3L:10898253-10898373 ( 64) ACAAACAA 1 chrX:10473882-10474002 ( 58) ACAAACAA 1 chr3R:25094746-25094866 ( 1) AACAACAC 1 chr3L:8442050-8442170 ( 14) AAAAAAAC 1 chr3R:31060730-31060850 ( 68) AAAAAAAC 1 chr3L:15104648-15104768 ( 63) AACAACAC 1 chrX:8410395-8410515 ( 12) AACCACAA 1 chr3R:21860093-21860213 ( 77) AAACAAAA 1 chrX:19640956-19641076 ( 55) AAACAAAA 1 chr2R:22080338-22080458 ( 33) ACAAAAAA 1 chrX:15306389-15306509 ( 14) ACCAACAA 1 chr3R:26103586-26103706 ( 59) ACAAAAAA 1 chr2L:2955732-2955852 ( 60) AACAAAAC 1 chrX:12736241-12736361 ( 22) AACCAAAA 1 chrX:6694530-6694650 ( 92) AAACACAC 1 chr3L:17011869-17011989 ( 54) AACCAAAA 1 chr3R:15291574-15291694 ( 2) AAACAAAC 1 chr2R:22297920-22298040 ( 110) GAAAACAA 1 chrX:21351281-21351401 ( 17) GAAAACAA 1 chrX:655519-655639 ( 111) ACAAAAAC 1 chr2L:6724256-6724376 ( 34) ACACAAAA 1 chrX:16608000-16608120 ( 49) ACCCACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0842 E= 1.6e-011 184 -1269 -295 -1269 168 -75 -1269 -1269 133 47 -1269 -1269 165 -60 -1269 -1269 189 -1269 -1269 -1269 54 140 -1269 -1269 189 -1269 -1269 -1269 157 -22 -1269 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.6e-011 0.969697 0.000000 0.030303 0.000000 0.863636 0.136364 0.000000 0.000000 0.681818 0.318182 0.000000 0.000000 0.848485 0.151515 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.393939 0.606061 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.803030 0.196970 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-4 regular expression -------------------------------------------------------------------------------- AA[AC]AA[CA]AA -------------------------------------------------------------------------------- Time 25.64 secs. ******************************************************************************** ******************************************************************************** MOTIF ACDCACAC MEME-5 width = 8 sites = 46 llr = 374 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7:5:7:8: pos.-specific C :a:a:9:a probability G 3:3:3:2: matrix T ::2::1:: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * * * * Relative 1.3 * * *** Entropy 1.1 ** ***** (11.7 bits) 0.9 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus G G G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17789644-17789764 17 1.46e-05 Gcacagtcac acacacac acgcacacTG chrX:6694530-6694650 45 1.46e-05 ATGATTATac acacacac ccatgcagcc chr3L:8442050-8442170 75 1.46e-05 Tcaaacgcac acacacac acacaGAAGC chrX:7930785-7930905 71 1.46e-05 TTCACGCCAC ACACACAC ACGCACTCAC chrX:4930552-4930672 42 1.46e-05 GAGCATATAC ACACACAC GCGCGCATAT chrX:15710061-15710181 79 1.46e-05 CATCGCACCC ACACACAC CTGGCCGATG chr3R:24876143-24876263 4 1.46e-05 cac acacacac acaccctcta chrX:18864220-18864340 79 1.46e-05 acgcatgcac acacacac tgacaagcac chr2L:6833708-6833828 70 2.73e-05 TCAAACACAG ACGCACAC GGGGACAGAA chr2R:18157702-18157822 29 2.73e-05 CAGTCACGTC ACGCACAC ATACAATCGC chr2L:12546203-12546323 93 2.73e-05 TTCAATTTac acgcacac acagccgcag chr3R:16899199-16899319 33 2.73e-05 AGAGAACCGC ACGCACAC CACCGCAAAA chrX:3407803-3407923 53 2.73e-05 AGAGAGCACA ACGCACAC AGGCAGACAG chr3R:6383277-6383397 67 2.73e-05 TGCTAATTGA ACGCACAC AAGCACAGTA chrX:2634528-2634648 89 2.73e-05 CATTGCACAC ACGCACAC ACCGAAAGGC chr3R:28889422-28889542 23 5.44e-05 TTTCCAATGC ACTCACAC AGAGCCACAA chr2R:22080338-22080458 63 5.44e-05 ACTCACAAAC ACACGCAC GCGCCAGCAG chr2L:6921276-6921396 7 5.44e-05 tcatgc actcacac acGCCAGCAG chr3L:3060124-3060244 31 6.71e-05 AATATGCGTA GCACACAC TCTTTTCTTG chr2L:1077134-1077254 10 6.71e-05 GCACGCCTC GCACACAC TGACAAAAAT chrX:5579617-5579737 73 6.71e-05 TGCGACCTGC GCACACAC CACTAGCCCT chr2L:11969043-11969163 113 6.71e-05 TCCGGCCGAG GCACACAC chrX:16586516-16586636 90 6.71e-05 ATGTATGTAT GCACACAC AACAAAAAAA chrX:8905751-8905871 10 7.80e-05 CACCAATAC ACGCGCAC CACACATGCT chr2R:12979785-12979905 71 1.02e-04 AAAATCAGTC ACACACGC TCATATTCTC chr2L:1644495-1644615 18 1.02e-04 GCGCACCAAT ACACACGC GCGATCAGTG chr3R:13975057-13975177 10 1.14e-04 TGCTGtcgc actcgcac tcgcacttac chrX:9666587-9666707 36 1.14e-04 TGCCActcgc actcgcac actcactctc chr3L:9854359-9854479 52 1.14e-04 CTTTGCCTCA ACTCGCAC AAATTTCGGT chr2R:25061688-25061808 79 1.38e-04 CACTGCTCTC GCTCACAC TTTCAGGCTG chr3R:12628577-12628697 32 1.38e-04 GCTGGAATTC GCTCACAC ACTTGTGTGC chr2L:1987487-1987607 50 1.38e-04 TCTCTTTCCA GCACGCAC GCTGGCCGCT chr3L:17011869-17011989 9 1.82e-04 CTACCGTT ACACGCGC GCCTGCCAGA chrX:13089984-13090104 32 1.99e-04 gttCGGCGGC ACACATAC ACTGTAAACT chr3R:10079380-10079500 91 1.99e-04 GTTACCGCAT ACACATAC AAATCAAATC chr3L:10898253-10898373 95 2.21e-04 CACTTTCTGC GCTCGCAC GTCACACGAG chr3R:7753714-7753834 91 2.21e-04 AGGCCGCACT GCTCGCAC GTCGAAAGCT chr2R:20556811-20556931 87 2.30e-04 TAAGATCTCC ACGCGCGC TGTTGTCTCC chr2L:16827218-16827338 87 2.45e-04 CCGGCTCTGC ACGCATAC ATATTCGCTG chr3R:24230868-24230988 33 2.45e-04 CAAGCGAGAA ACGCATAC GCCAAAGTCG chrX:8056861-8056981 11 2.54e-04 CAGGCAAATG GCGCACGC TAAACGCTGC chrX:8757880-8758000 68 2.65e-04 ttactcttcc actcgcgc cgctctctct chr3R:23601680-23601800 26 2.65e-04 TTCCCGTTTC ACTCGCGC AAAGCTCGCA chr3R:16934433-16934553 110 2.97e-04 CGCGTTATGC ACACGTAC ACT chr2L:16485931-16486051 13 3.53e-04 TGAGAGAAAT GCGCGCGC AAAAGTTTTA chr2R:9039529-9039649 44 3.81e-04 TCTCCCTCCA ACACATGC GCTCCTTAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17789644-17789764 1.5e-05 16_[+5]_96 chrX:6694530-6694650 1.5e-05 44_[+5]_68 chr3L:8442050-8442170 1.5e-05 74_[+5]_38 chrX:7930785-7930905 1.5e-05 70_[+5]_42 chrX:4930552-4930672 1.5e-05 41_[+5]_71 chrX:15710061-15710181 1.5e-05 78_[+5]_34 chr3R:24876143-24876263 1.5e-05 3_[+5]_109 chrX:18864220-18864340 1.5e-05 78_[+5]_34 chr2L:6833708-6833828 2.7e-05 69_[+5]_43 chr2R:18157702-18157822 2.7e-05 28_[+5]_84 chr2L:12546203-12546323 2.7e-05 92_[+5]_20 chr3R:16899199-16899319 2.7e-05 32_[+5]_80 chrX:3407803-3407923 2.7e-05 52_[+5]_60 chr3R:6383277-6383397 2.7e-05 66_[+5]_46 chrX:2634528-2634648 2.7e-05 88_[+5]_24 chr3R:28889422-28889542 5.4e-05 22_[+5]_90 chr2R:22080338-22080458 5.4e-05 62_[+5]_50 chr2L:6921276-6921396 5.4e-05 6_[+5]_106 chr3L:3060124-3060244 6.7e-05 30_[+5]_82 chr2L:1077134-1077254 6.7e-05 9_[+5]_103 chrX:5579617-5579737 6.7e-05 72_[+5]_40 chr2L:11969043-11969163 6.7e-05 112_[+5] chrX:16586516-16586636 6.7e-05 89_[+5]_23 chrX:8905751-8905871 7.8e-05 9_[+5]_103 chr2R:12979785-12979905 0.0001 70_[+5]_42 chr2L:1644495-1644615 0.0001 17_[+5]_95 chr3R:13975057-13975177 0.00011 9_[+5]_103 chrX:9666587-9666707 0.00011 35_[+5]_77 chr3L:9854359-9854479 0.00011 51_[+5]_61 chr2R:25061688-25061808 0.00014 78_[+5]_34 chr3R:12628577-12628697 0.00014 31_[+5]_81 chr2L:1987487-1987607 0.00014 49_[+5]_63 chr3L:17011869-17011989 0.00018 8_[+5]_104 chrX:13089984-13090104 0.0002 31_[+5]_81 chr3R:10079380-10079500 0.0002 90_[+5]_22 chr3L:10898253-10898373 0.00022 94_[+5]_18 chr3R:7753714-7753834 0.00022 90_[+5]_22 chr2R:20556811-20556931 0.00023 86_[+5]_26 chr2L:16827218-16827338 0.00024 86_[+5]_26 chr3R:24230868-24230988 0.00024 32_[+5]_80 chrX:8056861-8056981 0.00025 10_[+5]_102 chrX:8757880-8758000 0.00027 67_[+5]_45 chr3R:23601680-23601800 0.00027 25_[+5]_87 chr3R:16934433-16934553 0.0003 109_[+5]_3 chr2L:16485931-16486051 0.00035 12_[+5]_100 chr2R:9039529-9039649 0.00038 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACDCACAC width=8 seqs=46 chrX:17789644-17789764 ( 17) ACACACAC 1 chrX:6694530-6694650 ( 45) ACACACAC 1 chr3L:8442050-8442170 ( 75) ACACACAC 1 chrX:7930785-7930905 ( 71) ACACACAC 1 chrX:4930552-4930672 ( 42) ACACACAC 1 chrX:15710061-15710181 ( 79) ACACACAC 1 chr3R:24876143-24876263 ( 4) ACACACAC 1 chrX:18864220-18864340 ( 79) ACACACAC 1 chr2L:6833708-6833828 ( 70) ACGCACAC 1 chr2R:18157702-18157822 ( 29) ACGCACAC 1 chr2L:12546203-12546323 ( 93) ACGCACAC 1 chr3R:16899199-16899319 ( 33) ACGCACAC 1 chrX:3407803-3407923 ( 53) ACGCACAC 1 chr3R:6383277-6383397 ( 67) ACGCACAC 1 chrX:2634528-2634648 ( 89) ACGCACAC 1 chr3R:28889422-28889542 ( 23) ACTCACAC 1 chr2R:22080338-22080458 ( 63) ACACGCAC 1 chr2L:6921276-6921396 ( 7) ACTCACAC 1 chr3L:3060124-3060244 ( 31) GCACACAC 1 chr2L:1077134-1077254 ( 10) GCACACAC 1 chrX:5579617-5579737 ( 73) GCACACAC 1 chr2L:11969043-11969163 ( 113) GCACACAC 1 chrX:16586516-16586636 ( 90) GCACACAC 1 chrX:8905751-8905871 ( 10) ACGCGCAC 1 chr2R:12979785-12979905 ( 71) ACACACGC 1 chr2L:1644495-1644615 ( 18) ACACACGC 1 chr3R:13975057-13975177 ( 10) ACTCGCAC 1 chrX:9666587-9666707 ( 36) ACTCGCAC 1 chr3L:9854359-9854479 ( 52) ACTCGCAC 1 chr2R:25061688-25061808 ( 79) GCTCACAC 1 chr3R:12628577-12628697 ( 32) GCTCACAC 1 chr2L:1987487-1987607 ( 50) GCACGCAC 1 chr3L:17011869-17011989 ( 9) ACACGCGC 1 chrX:13089984-13090104 ( 32) ACACATAC 1 chr3R:10079380-10079500 ( 91) ACACATAC 1 chr3L:10898253-10898373 ( 95) GCTCGCAC 1 chr3R:7753714-7753834 ( 91) GCTCGCAC 1 chr2R:20556811-20556931 ( 87) ACGCGCGC 1 chr2L:16827218-16827338 ( 87) ACGCATAC 1 chr3R:24230868-24230988 ( 33) ACGCATAC 1 chrX:8056861-8056981 ( 11) GCGCACGC 1 chrX:8757880-8758000 ( 68) ACTCGCGC 1 chr3R:23601680-23601800 ( 26) ACTCGCGC 1 chr3R:16934433-16934553 ( 110) ACACGTAC 1 chr2L:16485931-16486051 ( 13) GCGCGCGC 1 chr2R:9039529-9039649 ( 44) ACACATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3254 E= 2.2e+000 145 -1217 16 -1217 -1217 213 -1217 -1217 82 -1217 27 -16 -1217 213 -1217 -1217 136 -1217 38 -1217 -1217 192 -1217 -103 157 -1217 -26 -1217 -1217 213 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 2.2e+000 0.739130 0.000000 0.260870 0.000000 0.000000 1.000000 0.000000 0.000000 0.478261 0.000000 0.282609 0.239130 0.000000 1.000000 0.000000 0.000000 0.695652 0.000000 0.304348 0.000000 0.000000 0.869565 0.000000 0.130435 0.804348 0.000000 0.195652 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACDCACAC MEME-5 regular expression -------------------------------------------------------------------------------- [AG]C[AGT]C[AG]CAC -------------------------------------------------------------------------------- Time 31.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5732-5852 4.35e-01 120 chr2L:18455914-18456034 7.90e-03 7_[+4(7.25e-05)]_86_[+4(7.25e-05)]_\ 11 chr2R:21160075-21160195 4.23e-03 120 chrX:16586516-16586636 1.37e-03 89_[+5(6.71e-05)]_3_[+4(7.25e-05)]_\ 12 chr2R:14790746-14790866 2.07e-03 69_[+4(7.25e-05)]_43 chrX:19546395-19546515 6.20e-01 120 chr3R:27736716-27736836 2.07e-01 24_[+4(2.40e-05)]_88 chrX:655519-655639 1.81e-01 120 chr2R:18973089-18973209 7.40e-02 106_[+1(1.35e-05)]_6 chr3R:21126871-21126991 1.34e-01 120 chrX:20411775-20411895 2.20e-01 28_[+1(1.35e-05)]_[+1(2.94e-05)]_12_\ [+1(7.72e-05)]_5_[+1(2.94e-05)]_8_[+1(1.35e-05)]_[+1(2.94e-05)]_19 chrX:19579084-19579204 1.14e-01 120 chrX:21231790-21231910 6.89e-01 120 chr3L:3247273-3247393 2.05e-03 41_[+1(6.34e-05)]_27_[+3(4.57e-05)]_\ 36 chrX:12753210-12753330 5.85e-02 14_[+3(7.80e-05)]_98 chr3L:5179295-5179415 4.83e-03 52_[+2(4.25e-05)]_16_[+2(4.25e-05)]_\ 36 chr3L:12433865-12433985 4.38e-02 19_[+1(1.35e-05)]_93 chr2L:1669770-1669890 1.18e-02 5_[+1(4.50e-05)]_107 chrX:4444950-4445070 3.96e-02 120 chrX:654432-654552 9.34e-02 72_[+1(2.94e-05)]_40 chr3R:7753714-7753834 1.26e-02 120 chrX:19640956-19641076 3.16e-02 120 chrX:3861238-3861358 5.54e-03 9_[+2(4.25e-05)]_103 chr3L:9854359-9854479 1.99e-02 120 chrX:20159384-20159504 1.44e-02 120 chrX:21351281-21351401 3.92e-01 120 chr2L:1644495-1644615 7.73e-03 76_[+1(4.50e-05)]_36 chrX:7204878-7204998 3.26e-02 64_[+2(4.25e-05)]_16_[+2(4.25e-05)]_\ 24 chr2R:14526874-14526994 2.16e-01 2_[+4(7.25e-05)]_110 chr2L:19142244-19142364 1.15e-01 58_[+4(7.25e-05)]_4_[+4(7.25e-05)]_\ 42 chr3L:3461596-3461716 6.55e-01 120 chr3L:16639199-16639319 9.05e-04 17_[+1(6.34e-05)]_60_[+2(4.25e-05)]_\ 27 chr2R:11228642-11228762 3.99e-02 86_[+3(2.83e-05)]_7_[+3(1.52e-05)]_\ 11 chrX:16608000-16608120 1.03e-02 60_[+1(1.35e-05)]_21_[+1(2.94e-05)]_\ [+1(2.94e-05)]_[+1(2.94e-05)]_7 chrX:636764-636884 4.79e-03 120 chrX:9109865-9109985 2.01e-02 10_[+4(7.25e-05)]_102 chr3L:5610710-5610830 5.10e-02 58_[+1(1.35e-05)]_54 chrX:10858006-10858126 4.24e-01 120 chrX:17077296-17077416 1.63e-01 35_[+3(1.52e-05)]_35_[+3(4.57e-05)]_\ 34 chr2L:15271610-15271730 9.54e-01 120 chr3R:21860093-21860213 3.68e-02 120 chrX:18864220-18864340 8.57e-03 27_[+5(1.46e-05)]_41_[+5(1.46e-05)]_\ 36 chr3R:31938079-31938199 1.01e-04 10_[+3(2.83e-05)]_45_[+1(1.35e-05)]_\ 22_[+4(7.25e-05)]_19 chr2L:548272-548392 8.09e-02 71_[+1(1.35e-05)]_41 chrX:11325661-11325781 2.58e-02 53_[+1(7.72e-05)]_27_[+4(7.25e-05)]_\ 24 chr3L:16930622-16930742 9.18e-01 120 chr2R:22297920-22298040 3.42e-01 120 chrX:19522633-19522753 7.82e-01 120 chr3R:6741804-6741924 9.75e-01 120 chr2L:9698819-9698939 1.01e-01 7_[+2(8.94e-05)]_105 chr2R:16221328-16221448 3.80e-02 26_[+4(7.25e-05)]_86 chrX:2634528-2634648 1.47e-03 88_[+5(2.73e-05)]_24 chrX:9666587-9666707 2.05e-04 51_[+2(2.62e-05)]_2_[+2(4.25e-05)]_\ 42_[+4(7.25e-05)]_1 chrX:9675055-9675175 3.52e-02 120 chrX:12018959-12019079 2.04e-01 87_[+3(4.57e-05)]_25 chr3R:26797901-26798021 7.11e-04 63_[+1(1.35e-05)]_38_[+4(7.25e-05)]_\ 3 chrX:22540082-22540202 3.09e-02 29_[+2(2.62e-05)]_25_[+2(2.62e-05)]_\ 50 chrX:18137453-18137573 6.47e-02 120 chr3R:9969302-9969422 5.70e-02 120 chr2R:14965806-14965926 1.77e-02 [+3(1.52e-05)]_4_[+3(1.52e-05)]_16_\ [+3(1.52e-05)]_76 chr2R:20556811-20556931 4.12e-01 120 chrX:10474130-10474250 2.07e-02 120 chrX:17077570-17077690 3.33e-02 32_[+3(1.52e-05)]_80 chr3R:7313148-7313268 7.95e-02 14_[+1(1.35e-05)]_98 chr2R:16000853-16000973 5.52e-01 120 chr3R:13975057-13975177 8.93e-02 120 chr2R:19456623-19456743 1.15e-03 96_[+3(1.52e-05)]_16 chr2R:7300817-7300937 8.71e-03 95_[+1(1.35e-05)]_17 chr3L:18865900-18866020 7.58e-01 120 chr3R:29572066-29572186 2.96e-01 120 chrX:19496050-19496170 2.52e-03 17_[+1(1.35e-05)]_43_[+4(2.40e-05)]_\ 44 chrX:21369379-21369499 1.60e-03 25_[+4(7.25e-05)]_87 chr3R:26103586-26103706 1.25e-01 120 chr2R:9039529-9039649 2.74e-03 83_[+1(7.72e-05)]_29 chrX:8905751-8905871 2.71e-03 9_[+5(7.80e-05)]_94_[+3(1.52e-05)]_\ 1 chr3R:6383277-6383397 1.33e-03 66_[+5(2.73e-05)]_16_[+5(2.73e-05)]_\ 13_[+4(2.40e-05)]_1 chr2L:14020609-14020729 3.17e-02 23_[+3(1.52e-05)]_89 chr3L:17972176-17972296 3.16e-01 120 chrX:10816994-10817114 5.21e-05 15_[+1(2.94e-05)]_15_[+2(2.62e-05)]_\ 74 chrX:19637745-19637865 6.39e-02 120 chr3R:25184578-25184698 3.03e-01 120 chr2L:11969043-11969163 1.43e-04 24_[+1(2.94e-05)]_[+1(2.94e-05)]_72_\ [+5(6.71e-05)] chr3R:24876143-24876263 3.60e-03 1_[+5(1.46e-05)]_22_[+5(1.46e-05)]_\ 81 chr3R:10546734-10546854 1.26e-02 5_[+1(6.34e-05)]_70_[+4(7.25e-05)]_\ 29 chr3L:17011869-17011989 3.99e-05 24_[+1(1.35e-05)]_88 chr3R:24230868-24230988 1.50e-03 1_[+1(2.94e-05)]_111 chr2L:8100106-8100226 3.20e-01 120 chrX:19637427-19637547 5.46e-01 120 chrX:2158200-2158320 2.23e-02 19_[+4(2.40e-05)]_93 chrX:2643132-2643252 7.44e-02 7_[+4(2.40e-05)]_60_[+4(7.25e-05)]_\ 37 chr3R:31405618-31405738 1.28e-02 23_[+4(2.40e-05)]_89 chr2R:14621912-14622032 3.88e-03 120 chr3R:10079380-10079500 6.39e-03 10_[+2(1.40e-05)]_102 chrX:16943586-16943706 8.45e-02 58_[+3(4.57e-05)]_54 chrX:13089984-13090104 4.44e-03 107_[+4(2.40e-05)]_5 chrX:12716011-12716131 6.62e-05 66_[+1(1.35e-05)]_34_[+2(4.25e-05)]_\ 4 chr2R:25285545-25285665 1.68e-01 41_[+2(8.94e-05)]_71 chr3R:29206861-29206981 3.93e-02 45_[+3(1.52e-05)]_19_[+3(1.52e-05)]_\ 40 chr2R:23046136-23046256 4.29e-01 120 chr2R:22242426-22242546 2.37e-01 120 chr3L:12690811-12690931 6.36e-03 105_[+2(1.40e-05)]_7 chr3L:17010688-17010808 7.52e-01 120 chr2R:20831877-20831997 1.07e-01 16_[+2(4.25e-05)]_14_[+2(4.25e-05)]_\ 74 chr2L:2955732-2955852 1.43e-02 120 chr2R:14504201-14504321 1.39e-01 40_[+3(4.57e-05)]_72 chr3R:12982146-12982266 8.52e-01 120 chr2L:12527739-12527859 5.75e-03 9_[+1(1.35e-05)]_32_[+2(5.68e-05)]_\ 63 chr2R:12979785-12979905 1.00e-03 55_[+4(7.25e-05)]_57 chr2L:6921276-6921396 4.70e-03 6_[+5(5.44e-05)]_106 chr2L:1987487-1987607 8.27e-03 39_[+2(4.25e-05)]_73 chr2R:12592330-12592450 3.02e-01 120 chrX:21060743-21060863 4.83e-02 52_[+4(7.25e-05)]_60 chr2L:16257232-16257352 8.83e-01 120 chrX:19866456-19866576 5.07e-01 120 chrX:17423710-17423830 3.25e-01 93_[+1(6.34e-05)]_19 chrX:5579617-5579737 4.65e-04 47_[+2(2.62e-05)]_17_[+5(6.71e-05)]_\ 40 chr2L:2993283-2993403 3.31e-01 120 chr3L:10325215-10325335 1.25e-04 10_[+3(2.83e-05)]_70_[+2(4.25e-05)]_\ 10_[+2(1.40e-05)]_6 chr3R:22397396-22397516 1.71e-01 120 chr2L:868039-868159 8.84e-02 50_[+2(2.62e-05)]_62 chr3R:28635400-28635520 3.87e-01 120 chr2L:3540056-3540176 2.93e-02 100_[+2(4.25e-05)]_12 chr3R:12628577-12628697 9.38e-04 80_[+3(1.52e-05)]_8_[+3(1.52e-05)]_\ [+3(1.52e-05)]_[+3(1.52e-05)] chrX:7320950-7321070 3.98e-02 64_[+2(1.40e-05)]_[+2(1.40e-05)]_\ [+2(1.40e-05)]_32 chrX:17651869-17651989 1.75e-01 120 chr3R:9725172-9725292 4.00e-01 120 chr3L:16985739-16985859 8.39e-01 120 chr2L:5421701-5421821 1.07e-01 11_[+1(6.34e-05)]_101 chr2L:16325209-16325329 5.67e-01 120 chr2L:2886269-2886389 2.13e-01 36_[+4(7.25e-05)]_4_[+4(7.25e-05)]_\ 64 chr3L:3069916-3070036 7.75e-04 20_[+2(2.62e-05)]_30_[+1(7.72e-05)]_\ 54 chrX:10211802-10211922 1.41e-02 47_[+3(1.52e-05)]_65 chr3L:15816041-15816161 6.03e-01 120 chr3L:2823700-2823820 5.64e-02 10_[+2(4.25e-05)]_35_[+2(4.25e-05)]_\ 59 chr3R:10133405-10133525 4.06e-02 120 chrX:8560888-8561008 7.60e-02 37_[+1(6.34e-05)]_27_[+1(1.35e-05)]_\ 40 chr2R:13957120-13957240 1.90e-01 80_[+3(1.52e-05)]_32 chr3L:10898508-10898628 4.68e-03 120 chr3L:1349834-1349954 1.20e-01 120 chr2L:6324117-6324237 5.15e-01 120 chr2R:12173008-12173128 9.44e-04 25_[+4(2.40e-05)]_87 chrX:10473882-10474002 1.63e-01 120 chr2R:17027773-17027893 3.00e-02 120 chr2R:12884452-12884572 5.45e-03 75_[+1(2.94e-05)]_37 chr2R:8396793-8396913 5.44e-01 120 chr3R:14326372-14326492 3.73e-03 4_[+2(1.40e-05)]_15_[+3(1.52e-05)]_\ 39_[+3(1.52e-05)]_38 chr2R:21634896-21635016 2.78e-01 120 chrX:17652076-17652196 4.10e-01 120 chrX:6534222-6534342 1.77e-02 35_[+1(1.35e-05)]_24_[+1(1.35e-05)]_\ [+1(2.94e-05)]_37 chr3L:3070126-3070246 4.24e-01 120 chr2L:16824982-16825102 4.06e-01 120 chr3L:432731-432851 4.31e-02 32_[+3(6.06e-05)]_80 chr2R:9577617-9577737 1.65e-02 84_[+2(7.31e-05)]_28 chr2L:3789809-3789929 7.32e-02 120 chr2L:8104193-8104313 1.52e-01 54_[+2(4.25e-05)]_58 chrX:15306389-15306509 6.15e-03 31_[+1(1.35e-05)]_81 chrX:13128367-13128487 7.76e-03 37_[+4(7.25e-05)]_11_[+4(7.25e-05)]_\ 56 chr2L:6724256-6724376 5.53e-04 55_[+1(6.34e-05)]_45_[+3(2.83e-05)]_\ 4 chr3L:3035394-3035514 1.96e-02 67_[+3(1.52e-05)]_45 chrX:3407803-3407923 2.55e-04 25_[+4(7.25e-05)]_2_[+1(2.94e-05)]_\ 9_[+5(2.73e-05)]_18_[+1(6.34e-05)]_34 chr3R:23601680-23601800 1.04e-03 43_[+3(2.83e-05)]_69 chr3R:25080562-25080682 1.22e-02 54_[+1(1.35e-05)]_58 chr2L:7038238-7038358 1.12e-01 3_[+4(7.25e-05)]_45_[+4(7.25e-05)]_\ 56 chr3L:12434543-12434663 7.39e-02 120 chr2L:1077134-1077254 1.61e-05 9_[+5(6.71e-05)]_41_[+2(2.62e-05)]_\ 54 chrX:15710061-15710181 4.12e-02 78_[+5(1.46e-05)]_17_[+5(2.73e-05)]_\ 9 chr3R:16403645-16403765 3.84e-01 120 chr3R:9886562-9886682 1.21e-01 23_[+2(1.40e-05)]_20_[+2(4.25e-05)]_\ 61 chr3L:3060124-3060244 2.97e-02 30_[+5(6.71e-05)]_82 chr3L:15104648-15104768 4.49e-03 8_[+3(2.83e-05)]_104 chr3R:12442953-12443073 5.84e-01 120 chr3L:1891117-1891237 6.42e-02 100_[+3(1.52e-05)]_12 chrX:1970641-1970761 4.87e-02 26_[+2(1.40e-05)]_48_[+2(2.62e-05)]_\ 30 chrX:17314351-17314471 7.38e-02 4_[+1(1.35e-05)]_108 chr3R:31060730-31060850 1.14e-01 120 chrX:3162173-3162293 5.14e-02 106_[+1(1.35e-05)]_6 chr3R:16899199-16899319 1.43e-02 32_[+5(2.73e-05)]_80 chr2R:17028112-17028232 1.18e-02 88_[+3(6.06e-05)]_24 chr2L:3538679-3538799 7.89e-04 3_[+2(2.62e-05)]_42_[+1(1.35e-05)]_\ 59 chrX:6013306-6013426 1.72e-03 6_[+2(1.40e-05)]_6_[+2(4.25e-05)]_\ 29_[+2(1.40e-05)]_[+2(1.40e-05)]_17_[+4(2.40e-05)]_22 chr3L:9854562-9854682 5.98e-02 120 chr3L:19907456-19907576 1.88e-02 120 chr3R:18244299-18244419 1.90e-01 120 chr3R:12279036-12279156 1.01e-01 35_[+1(2.94e-05)]_77 chrX:4930552-4930672 6.16e-04 39_[+5(1.46e-05)]_73 chrX:19697356-19697476 6.00e-02 5_[+3(2.83e-05)]_15_[+3(2.83e-05)]_\ 84 chr2R:13941171-13941291 7.42e-03 21_[+1(1.35e-05)]_46_[+1(2.94e-05)]_\ 37 chr2R:19424441-19424561 3.14e-02 120 chr3R:18923639-18923759 9.01e-01 120 chrX:8410395-8410515 4.70e-02 30_[+1(6.34e-05)]_82 chr3R:5592301-5592421 1.01e-02 79_[+1(1.35e-05)]_33 chr3L:14562754-14562874 1.01e-01 9_[+4(2.40e-05)]_103 chr3R:16403847-16403967 4.29e-02 84_[+2(5.68e-05)]_28 chr3R:13877275-13877395 3.38e-02 120 chr2L:12546203-12546323 2.68e-02 92_[+5(2.73e-05)]_20 chrX:11154747-11154867 6.95e-02 81_[+1(2.94e-05)]_31 chr2R:10604202-10604322 2.01e-02 100_[+3(4.57e-05)]_12 chrX:20159166-20159286 2.05e-03 11_[+2(2.62e-05)]_101 chr3L:17964944-17965064 1.04e-01 20_[+1(2.94e-05)]_4_[+1(2.94e-05)]_\ 80 chrX:8056861-8056981 1.84e-02 49_[+4(7.25e-05)]_63 chr2R:22080338-22080458 9.22e-05 62_[+5(5.44e-05)]_21_[+1(1.35e-05)]_\ 21 chr3L:319420-319540 6.90e-01 120 chr3R:16453174-16453294 1.45e-01 120 chrX:2140673-2140793 3.97e-01 120 chr2R:15611032-15611152 5.70e-02 5_[+1(2.94e-05)]_16_[+1(7.72e-05)]_\ 83 chr2L:11516599-11516719 3.49e-01 120 chrX:7930785-7930905 7.63e-04 68_[+5(1.46e-05)]_[+5(5.44e-05)]_36 chr2R:25061688-25061808 2.70e-03 44_[+2(1.40e-05)]_22_[+2(2.62e-05)]_\ 38 chr2L:2038005-2038125 7.10e-02 61_[+4(2.40e-05)]_51 chrX:9729202-9729322 7.41e-01 120 chr3R:20253756-20253876 9.43e-02 120 chr2R:17535440-17535560 7.23e-02 120 chr3L:10898253-10898373 5.28e-03 120 chr3L:9019402-9019522 9.51e-02 69_[+2(1.40e-05)]_[+2(1.40e-05)]_35 chr2R:20903602-20903722 3.80e-01 120 chrX:8757880-8758000 5.26e-04 17_[+1(4.50e-05)]_53_[+2(1.40e-05)]_\ 2_[+2(2.62e-05)]_24 chr3L:16377972-16378092 4.21e-02 110_[+1(2.94e-05)]_2 chr3L:12627748-12627868 8.00e-03 107_[+2(1.40e-05)]_5 chrX:16217422-16217542 1.45e-01 [+1(2.94e-05)]_24_[+1(7.72e-05)]_80 chrX:10472978-10473098 5.38e-02 4_[+4(7.25e-05)]_108 chr3L:8442050-8442170 1.93e-03 72_[+5(1.46e-05)]_40 chr3R:6848675-6848795 1.93e-03 13_[+1(2.94e-05)]_25_[+2(2.62e-05)]_\ 66 chrX:6694530-6694650 1.32e-02 42_[+5(1.46e-05)]_19_[+5(6.71e-05)]_\ 16_[+5(1.46e-05)]_[+5(1.46e-05)]_11 chr3R:15291574-15291694 5.01e-03 100_[+2(1.40e-05)]_[+2(5.68e-05)]_4 chr2L:2364482-2364602 9.91e-03 69_[+4(7.25e-05)]_43 chr2R:12904425-12904545 1.81e-03 24_[+1(1.35e-05)]_71_[+1(2.94e-05)]_\ 9 chr3R:24234077-24234197 1.12e-02 98_[+4(2.40e-05)]_14 chr2L:15499466-15499586 1.01e-02 89_[+2(2.62e-05)]_23 chrX:5594001-5594121 4.69e-03 16_[+1(1.35e-05)]_44_[+1(1.35e-05)]_\ 44 chr3R:28889422-28889542 2.81e-03 22_[+5(5.44e-05)]_74_[+3(2.83e-05)]_\ 8 chr2R:8024493-8024613 1.42e-03 35_[+4(2.40e-05)]_77 chr3R:18923848-18923968 1.12e-02 29_[+1(6.34e-05)]_46_[+1(1.35e-05)]_\ 29 chr2L:16485931-16486051 4.02e-03 120 chrX:19851232-19851352 3.28e-02 33_[+3(4.57e-05)]_79 chr2R:18157702-18157822 2.85e-02 28_[+5(2.73e-05)]_84 chr3R:16830175-16830295 2.49e-02 57_[+2(1.40e-05)]_55 chrX:17789644-17789764 1.21e-04 14_[+5(1.46e-05)]_2_[+5(2.73e-05)]_\ 65_[+2(2.62e-05)]_2_[+2(8.94e-05)]_5 chr3L:342991-343111 6.45e-01 120 chrX:8806721-8806841 1.35e-02 1_[+2(2.62e-05)]_24_[+2(2.62e-05)]_\ 79 chr2R:14848240-14848360 2.27e-01 120 chr3R:25094746-25094866 7.29e-03 80_[+2(2.62e-05)]_32 chr2R:9284444-9284564 3.40e-02 120 chr3L:12580478-12580598 9.21e-02 60_[+2(4.25e-05)]_52 chrX:12736241-12736361 2.81e-02 86_[+1(4.50e-05)]_26 chr3R:16934433-16934553 3.12e-02 120 chr3L:16052319-16052439 3.09e-01 120 chr3R:11353581-11353701 2.72e-01 120 chr2L:6833708-6833828 1.54e-03 69_[+5(2.73e-05)]_32_[+1(2.94e-05)]_\ 3 chrX:12750371-12750491 4.28e-02 53_[+2(1.40e-05)]_59 chr2L:16827218-16827338 5.00e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************