******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8359.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:2350031-2350151 1.0000 120 chrX:19175311-19175431 1.0000 120 chr3R:15024341-15024461 1.0000 120 chr2L:5229378-5229498 1.0000 120 chr3R:5705121-5705241 1.0000 120 chr3R:22632320-22632440 1.0000 120 chr2L:8215669-8215789 1.0000 120 chr2L:5223456-5223576 1.0000 120 chr2R:15825174-15825294 1.0000 120 chr3L:7732488-7732608 1.0000 120 chr3R:11831326-11831446 1.0000 120 chrX:18942119-18942239 1.0000 120 chrX:14175802-14175922 1.0000 120 chr2R:17081246-17081366 1.0000 120 chr3L:20984948-20985068 1.0000 120 chr3R:12387104-12387224 1.0000 120 chrX:1094521-1094641 1.0000 120 chrX:11511438-11511558 1.0000 120 chrX:8366468-8366588 1.0000 120 chr3L:13266217-13266337 1.0000 120 chr2R:14923778-14923898 1.0000 120 chr2L:5617363-5617483 1.0000 120 chrX:3127703-3127823 1.0000 120 chr2L:9393423-9393543 1.0000 120 chr3R:25762144-25762264 1.0000 120 chr3R:6411944-6412064 1.0000 120 chrX:19020201-19020321 1.0000 120 chrX:8958400-8958520 1.0000 120 chr2R:13583578-13583698 1.0000 120 chrX:17018321-17018441 1.0000 120 chrX:6541091-6541211 1.0000 120 chrX:11246004-11246124 1.0000 120 chr3R:24956327-24956447 1.0000 120 chrX:12012868-12012988 1.0000 120 chr2R:24557579-24557699 1.0000 120 chr3R:15999080-15999200 1.0000 120 chr3L:12022005-12022125 1.0000 120 chr2L:6705154-6705274 1.0000 120 chr2L:9396502-9396622 1.0000 120 chr2R:14413866-14413986 1.0000 120 chr2L:7140228-7140348 1.0000 120 chrX:16932628-16932748 1.0000 120 chr3R:7991585-7991705 1.0000 120 chrX:4453077-4453197 1.0000 120 chrX:15616157-15616277 1.0000 120 chrX:11526455-11526575 1.0000 120 chr3R:14425622-14425742 1.0000 120 chr2R:7087820-7087940 1.0000 120 chr3R:19839341-19839461 1.0000 120 chrX:11520981-11521101 1.0000 120 chrX:20133571-20133691 1.0000 120 chr3L:12023276-12023396 1.0000 120 chr2R:8578445-8578565 1.0000 120 chr2R:14006248-14006368 1.0000 120 chr3L:6574375-6574495 1.0000 120 chr3R:17125806-17125926 1.0000 120 chrX:11543469-11543589 1.0000 120 chrX:7475343-7475463 1.0000 120 chrX:15175623-15175743 1.0000 120 chr2L:7368940-7369060 1.0000 120 chr3L:19497274-19497394 1.0000 120 chr3R:30830577-30830697 1.0000 120 chr2R:14414068-14414188 1.0000 120 chr3R:16335577-16335697 1.0000 120 chr3R:19816897-19817017 1.0000 120 chr3R:19101420-19101540 1.0000 120 chr2L:16367369-16367489 1.0000 120 chr2L:13630082-13630202 1.0000 120 chr3R:15316494-15316614 1.0000 120 chr3R:16537446-16537566 1.0000 120 chr2R:11487130-11487250 1.0000 120 chrX:12487624-12487744 1.0000 120 chr2L:5227030-5227150 1.0000 120 chrX:15620967-15621087 1.0000 120 chr3R:16334936-16335056 1.0000 120 chrX:21126929-21127049 1.0000 120 chr3L:19521232-19521352 1.0000 120 chrX:19176290-19176410 1.0000 120 chr2R:20611125-20611245 1.0000 120 chr2R:11726816-11726936 1.0000 120 chr3L:16571153-16571273 1.0000 120 chr2L:6276120-6276240 1.0000 120 chr3L:19528686-19528806 1.0000 120 chr3R:7991790-7991910 1.0000 120 chr3L:16568960-16569080 1.0000 120 chr3R:14425831-14425951 1.0000 120 chr2L:19948115-19948235 1.0000 120 chr2R:7588698-7588818 1.0000 120 chr2R:18819121-18819241 1.0000 120 chr3R:23735774-23735894 1.0000 120 chr3R:8223337-8223457 1.0000 120 chr3R:23472150-23472270 1.0000 120 chr3R:17126025-17126145 1.0000 120 chr2L:7071358-7071478 1.0000 120 chr2R:24829781-24829901 1.0000 120 chr2R:7588499-7588619 1.0000 120 chr3L:10365780-10365900 1.0000 120 chr2R:11726615-11726735 1.0000 120 chrX:15643339-15643459 1.0000 120 chr3R:15999312-15999432 1.0000 120 chr3R:19817102-19817222 1.0000 120 chr3L:2893939-2894059 1.0000 120 chr3R:5777687-5777807 1.0000 120 chr2R:24557802-24557922 1.0000 120 chr2R:19628681-19628801 1.0000 120 chr3R:19152464-19152584 1.0000 120 chr3L:19525875-19525995 1.0000 120 chr3R:14214970-14215090 1.0000 120 chrX:13932933-13933053 1.0000 120 chr3R:30566320-30566440 1.0000 120 chr2L:7542224-7542344 1.0000 120 chr2R:13589340-13589460 1.0000 120 chr3R:19152259-19152379 1.0000 120 chr3L:19136441-19136561 1.0000 120 chr3L:18993709-18993829 1.0000 120 chr3L:4489611-4489731 1.0000 120 chr2L:5259357-5259477 1.0000 120 chr2L:7542519-7542639 1.0000 120 chrX:11547076-11547196 1.0000 120 chrX:20129529-20129649 1.0000 120 chr3L:13265325-13265445 1.0000 120 chr3L:8798710-8798830 1.0000 120 chr2L:13630281-13630401 1.0000 120 chr2L:12343739-12343859 1.0000 120 chr3L:4490841-4490961 1.0000 120 chr2R:8316794-8316914 1.0000 120 chr3L:18994265-18994385 1.0000 120 chr3R:28682106-28682226 1.0000 120 chr3R:22630168-22630288 1.0000 120 chrX:15616362-15616482 1.0000 120 chr2L:5233288-5233408 1.0000 120 chrX:15175420-15175540 1.0000 120 chr3R:31246857-31246977 1.0000 120 chr3L:13489492-13489612 1.0000 120 chr2L:5235392-5235512 1.0000 120 chr3R:9886180-9886300 1.0000 120 chr3L:19522931-19523051 1.0000 120 chr3L:10365987-10366107 1.0000 120 chr3R:23472355-23472475 1.0000 120 chr2L:7071573-7071693 1.0000 120 chrX:4453288-4453408 1.0000 120 chr3R:22633173-22633293 1.0000 120 chr2R:24829981-24830101 1.0000 120 chrX:19162654-19162774 1.0000 120 chr3R:8118155-8118275 1.0000 120 chr3R:16537657-16537777 1.0000 120 chrX:9012613-9012733 1.0000 120 chrX:334719-334839 1.0000 120 chr3R:19101622-19101742 1.0000 120 chrX:8939282-8939402 1.0000 120 chr3L:8807309-8807429 1.0000 120 chr3L:1928377-1928497 1.0000 120 chr2L:7140464-7140584 1.0000 120 chr3R:19839554-19839674 1.0000 120 chrX:13221571-13221691 1.0000 120 chr2R:13585945-13586065 1.0000 120 chrX:8995155-8995275 1.0000 120 chr3L:12023480-12023600 1.0000 120 chrX:11543668-11543788 1.0000 120 chr2L:5338393-5338513 1.0000 120 chr3L:12026521-12026641 1.0000 120 chr3L:18992968-18993088 1.0000 120 chr3R:16355170-16355290 1.0000 120 chr3R:16356961-16357081 1.0000 120 chr2R:13590725-13590845 1.0000 120 chr3R:28704208-28704328 1.0000 120 chr3L:12017348-12017468 1.0000 120 chr2R:20611337-20611457 1.0000 120 chrX:13946816-13946936 1.0000 120 chrX:13933162-13933282 1.0000 120 chr3R:12712917-12713037 1.0000 120 chr3R:9886381-9886501 1.0000 120 chr3R:21434018-21434138 1.0000 120 chr3L:16572319-16572439 1.0000 120 chr2L:7074021-7074141 1.0000 120 chr3R:16335778-16335898 1.0000 120 chr2R:11724582-11724702 1.0000 120 chrX:12487825-12487945 1.0000 120 chr3L:19526083-19526203 1.0000 120 chr2R:7088024-7088144 1.0000 120 chr3L:2890350-2890470 1.0000 120 chrX:14749249-14749369 1.0000 120 chr3L:19528897-19529017 1.0000 120 chr3L:8787405-8787525 1.0000 120 chr3L:16891225-16891345 1.0000 120 chr3L:18993940-18994060 1.0000 120 chr2R:18817615-18817735 1.0000 120 chr3L:16981273-16981393 1.0000 120 chr3R:7995859-7995979 1.0000 120 chr3L:7859219-7859339 1.0000 120 chr2R:11487329-11487449 1.0000 120 chr2L:6276325-6276445 1.0000 120 chr2R:13589547-13589667 1.0000 120 chrX:14098600-14098720 1.0000 120 chr2R:13592310-13592430 1.0000 120 chr3L:7733598-7733718 1.0000 120 chr3R:6973529-6973649 1.0000 120 chr3R:22628974-22629094 1.0000 120 chr3R:13999381-13999501 1.0000 120 chr3R:10614078-10614198 1.0000 120 chrX:21127130-21127250 1.0000 120 chr2L:6710258-6710378 1.0000 120 chr2L:5231141-5231261 1.0000 120 chr2R:12913241-12913361 1.0000 120 chrX:15621167-15621287 1.0000 120 chrX:15292616-15292736 1.0000 120 chr3L:19939233-19939353 1.0000 120 chr2L:5227232-5227352 1.0000 120 chr3R:9759371-9759491 1.0000 120 chr2R:14927076-14927196 1.0000 120 chr2L:492350-492470 1.0000 120 chrX:19172186-19172306 1.0000 120 chr2L:7537592-7537712 1.0000 120 chr2L:2494372-2494492 1.0000 120 chr3L:19497481-19497601 1.0000 120 chr3L:9125060-9125180 1.0000 120 chr2L:10500922-10501042 1.0000 120 chr3L:7781887-7782007 1.0000 120 chrX:13645043-13645163 1.0000 120 chr3L:19136706-19136826 1.0000 120 chrX:2348466-2348586 1.0000 120 chr2L:7537894-7538014 1.0000 120 chr2L:5238645-5238765 1.0000 120 chr2L:9386367-9386487 1.0000 120 chrX:12760586-12760706 1.0000 120 chr3R:16525897-16526017 1.0000 120 chr3R:17231845-17231965 1.0000 120 chr3R:6970697-6970817 1.0000 120 chr2L:7702817-7702937 1.0000 120 chr3R:23738166-23738286 1.0000 120 chr2R:14023916-14024036 1.0000 120 chr3L:1576646-1576766 1.0000 120 chr2R:7531577-7531697 1.0000 120 chr2R:24832457-24832577 1.0000 120 chr3L:19527681-19527801 1.0000 120 chr2R:14418503-14418623 1.0000 120 chr2L:6274510-6274630 1.0000 120 chr2L:5207290-5207410 1.0000 120 chr3L:16569160-16569280 1.0000 120 chr2R:14042598-14042718 1.0000 120 chr3R:30566521-30566641 1.0000 120 chr3R:8118361-8118481 1.0000 120 chr3R:7989085-7989205 1.0000 120 chrX:19171006-19171126 1.0000 120 chr2L:5260295-5260415 1.0000 120 chr3R:13450430-13450550 1.0000 120 chr2L:7542738-7542858 1.0000 120 chr3R:21825258-21825378 1.0000 120 chrX:20133773-20133893 1.0000 120 chr3L:15267875-15267995 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8359/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8359.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.237 G 0.23 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.237 G 0.23 T 0.266 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAACGCG MEME-1 width = 8 sites = 133 llr = 1109 E-value = 5.0e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9a97:::1 pos.-specific C ::::a:a2 probability G 1:1::a:6 matrix T :::3:::1 bits 2.1 * 1.9 * *** 1.7 ** *** 1.5 ** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.0 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13450430-13450550 83 1.51e-05 TTGCTGTCGG AAAACGCG AGCGGTCCAA chr2L:7702817-7702937 88 1.51e-05 AGTCGCCCCA AAAACGCG CACCTCGTCT chr3R:17231845-17231965 109 1.51e-05 AACCGCGCAC AAAACGCG TCGA chr3L:7781887-7782007 77 1.51e-05 TGTTAAGCAG AAAACGCG ATTATGTAGC chr3R:10614078-10614198 24 1.51e-05 GATTGATGGC AAAACGCG TGGTTAACGG chr3L:16572319-16572439 83 1.51e-05 GAAACTGATG AAAACGCG CCCAAATCGC chr3R:21434018-21434138 49 1.51e-05 ACGCGTCGGC AAAACGCG CGGCTGTCAC chrX:13946816-13946936 38 1.51e-05 CGCGTTTTAA AAAACGCG ACCACTGTGT chr3R:16356961-16357081 52 1.51e-05 GGAGCGACTG AAAACGCG GGCTGCTGCC chrX:13221571-13221691 55 1.51e-05 ACGCGTTTTA AAAACGCG CCCGTCTGTC chrX:19162654-19162774 46 1.51e-05 AATCGCTGGG AAAACGCG CCCGAATCGC chr2R:8316794-8316914 69 1.51e-05 GGCGCGGCAA AAAACGCG GGCGCGTTTT chr3L:4490841-4490961 49 1.51e-05 AATCGCCAAT AAAACGCG CGCGTTTCGC chr3L:19136441-19136561 96 1.51e-05 GGGGCGTTTT AAAACGCG CGCGCTTATT chrX:13932933-13933053 14 1.51e-05 GCGTCAGCAG AAAACGCG TGCAGCCTTG chr3L:19525875-19525995 108 1.51e-05 TTGGCGTTTT AAAACGCG CTAAG chr2R:19628681-19628801 102 1.51e-05 ATCGATTTCA AAAACGCG CGCGCGGTTT chr3R:5777687-5777807 64 1.51e-05 GCATGCGATG AAAACGCG TCCAAGTCGG chrX:15643339-15643459 64 1.51e-05 AAACGCTAGA AAAACGCG CACGCACAGT chr2R:11726615-11726735 21 1.51e-05 AGTCGCGTGC AAAACGCG TGGGCGATTT chr3L:10365780-10365900 23 1.51e-05 AAACGCTATA AAAACGCG CGCGAAACGC chr3R:23472150-23472270 60 1.51e-05 GCGACAACAA AAAACGCG CACGCGATTC chr3R:8223337-8223457 27 1.51e-05 AATGCGAACG AAAACGCG TCACAAATCG chr2R:18819121-18819241 55 1.51e-05 CCAAACGTGA AAAACGCG CCGTATGAAA chr3L:19528686-19528806 102 1.51e-05 CACGCGTCTA AAAACGCG CTAAGTGATT chr2R:20611125-20611245 29 1.51e-05 ATGGCGTTTA AAAACGCG TGCATTGCAT chrX:21126929-21127049 31 1.51e-05 TAAACTCGGC AAAACGCG TGCGATTTAA chr2L:13630082-13630202 35 1.51e-05 AATCGCGTGC AAAACGCG TCCTCGCATT chr3R:19101420-19101540 62 1.51e-05 AAACGCATGC AAAACGCG TGCAGCGAAA chr3L:19497274-19497394 67 1.51e-05 GAGGCGTTTT AAAACGCG GTCGCGACTT chrX:7475343-7475463 36 1.51e-05 AACCGCATGC AAAACGCG TCACATGCAG chr3L:12023276-12023396 27 1.51e-05 AATGGCTCGA AAAACGCG CTTGAATCGC chr3R:19839341-19839461 80 1.51e-05 CTGGCGATTA AAAACGCG CCATCATTAA chrX:15616157-15616277 60 1.51e-05 AATCGCGCTG AAAACGCG CCGAAAACGC chrX:4453077-4453197 64 1.51e-05 CGGGCGGCAG AAAACGCG CGCGTTTTTA chr3R:7991585-7991705 77 1.51e-05 AGTTCGGAAA AAAACGCG CCAGCAACAT chrX:16932628-16932748 76 1.51e-05 AAACGCGAGC AAAACGCG TGCGAGCTTT chr2L:7140228-7140348 3 1.51e-05 CA AAAACGCG AGCGCTGCTA chr3R:24956327-24956447 96 1.51e-05 AAACGCCAGC AAAACGCG CGAATAAATC chr2R:13583578-13583698 85 1.51e-05 AGTAGCATGA AAAACGCG CAGAAAACGA chrX:8958400-8958520 60 1.51e-05 GATGCGTTTA AAAACGCG CACAAACCGC chr2L:5617363-5617483 85 1.51e-05 CAAGCGGCTA AAAACGCG CGCGACTCAA chrX:11511438-11511558 42 1.51e-05 AGACGCTGGC AAAACGCG CGCCGCTCGC chrX:1094521-1094641 67 1.51e-05 AGTCGCCAGC AAAACGCG CTGGGCCAAC chr3R:12387104-12387224 85 1.51e-05 CGTCGCTGGG AAAACGCG TCCGAATCGC chr2R:17081246-17081366 90 1.51e-05 TGTGGAGAGA AAAACGCG AACGCGTCTT chrX:18942119-18942239 84 1.51e-05 AAACGCGTGC AAAACGCG CGCGCGACTA chr3R:11831326-11831446 53 1.51e-05 AAACGCAATA AAAACGCG CCCAACTCGC chr2R:15825174-15825294 66 1.51e-05 GTGTTAAGCA AAAACGCG TCTCTGTGTC chr2L:8215669-8215789 38 1.51e-05 AAACGCGTCG AAAACGCG CGAGCTTTTT chr2L:5229378-5229498 57 1.51e-05 AAGGCGTTTA AAAACGCG CCGAAATCGC chr2R:11724582-11724702 84 3.01e-05 GACGCGTTCC AAATCGCG TCGCCCAACA chrX:334719-334839 12 3.01e-05 CTGGCGGTTT AAATCGCG CTGGCGGCCA chr2L:12343739-12343859 90 3.01e-05 AAACGCGAGA AAATCGCG CGCATCGTCG chrX:20129529-20129649 60 3.01e-05 AACAGCGCCG AAATCGCG CTCGTTTTCC chr3R:19152259-19152379 56 3.01e-05 AATCGCGTCA AAATCGCG CGTTAGCTGG chr3R:7991790-7991910 8 3.01e-05 AGCAGCT AAATCGCG TTAATTTGGC chr3R:16335577-16335697 41 3.01e-05 AAACGCTTGC AAATCGCG CACCGCAATT chr2R:8578445-8578565 81 3.01e-05 CGGCATTAGA AAATCGCG CGCGTTTTCC chrX:12012868-12012988 11 3.01e-05 AATCGCACAA AAATCGCG CAAAAATGAA chrX:19020201-19020321 33 3.01e-05 AAACGCTGGC AAATCGCG TTCGCGTTAA chr3R:23738166-23738286 42 4.57e-05 TTCATCCAAT AAAACGCC CATAATTACA chr3R:6973529-6973649 23 4.57e-05 TGGAAAATTT AAAACGCC ACCTATTGGC chr3L:16981273-16981393 6 4.57e-05 GTACA AAAACGCC GAGCAGGCCA chrX:14749249-14749369 43 4.57e-05 TACCGCCTCG AAAACGCC TCGGAATCGC chr2R:13585945-13586065 19 4.57e-05 AAAATTTCTA AAAACGCC CGCAAACCGC chr3R:31246857-31246977 100 4.57e-05 AAGCGATTGT AAAACGCC GCAAGAGCCT chr3L:19521232-19521352 85 4.57e-05 TCAGCGTTTT AAAACGCC AGTGTAATTG chr3R:30830577-30830697 39 4.57e-05 AAACGCTGAC AAAACGCC TCAAAGTCGC chr3R:14425622-14425742 27 4.57e-05 AGCGGCGATT AAAACGCC TTGCTCTAAT chr3R:15999080-15999200 22 4.57e-05 GTTGCGGTTA AAAACGCC AGCATAACGC chr2R:24557579-24557699 93 4.57e-05 GGCGCGACTA AAAACGCC TGCTTACCGT chr2R:14023916-14024036 101 6.32e-05 GCTCGTTCTA AAAACGCT GGCTGTTAAT chr2L:6276325-6276445 87 6.32e-05 GATCCCACGG AAAACGCT TTCATAACTG chr2L:5233288-5233408 66 6.32e-05 GAGGCGACTA AAAACGCT AGAAAAACGC chr3L:2893939-2894059 32 6.32e-05 AACCGCCTCG AAAACGCT AGAAAAACTC chr3R:14425831-14425951 82 6.32e-05 CGCACTACTA AAAACGCT ATAAAATCAG chr3R:16537446-16537566 88 6.32e-05 AACAGCGCGG AAAACGCT CCGAATTGCT chr2R:7087820-7087940 92 6.32e-05 AAACGCATGC AAAACGCT AATATTCATT chr2L:6705154-6705274 17 6.32e-05 AGCAAGAAGG AAAACGCT GGCGCGGCTA chr3L:19528897-19529017 35 7.87e-05 ACTATTTCTC AAATCGCC CTCTTCTCTT chr3R:9886180-9886300 10 7.87e-05 GTGCGTTTT AAATCGCC CGTAATTGTG chr2R:11487130-11487250 79 7.87e-05 CTCGCGTTTA AAATCGCC TGGCAAACGC chr3R:25762144-25762264 65 7.87e-05 AATCGCTCGC AAATCGCC TAATCAAGCA chr3L:20984948-20985068 55 7.87e-05 AAACGCTTGC AAATCGCC AGCAAATCGC chrX:19175311-19175431 68 7.87e-05 GCTGCGACTA AAATCGCC CTTGAAACGC chr2R:14006248-14006368 107 9.17e-05 CTTGCGTTTG GAAACGCG AGCGGT chr3L:13266217-13266337 31 9.17e-05 ACGGCAACTT GAAACGCG CCAAAAAAAA chr3L:9125060-9125180 30 1.09e-04 gCAGCGGCAG AAAACGCA TGAAAAACTG chr3R:13999381-13999501 30 1.09e-04 AAACGCTGGC AAAACGCA TCGCTGCACA chr3R:15316494-15316614 49 1.09e-04 AACCGCACGG AAAACGCA ACGAAATCGA chr3L:6574375-6574495 38 1.09e-04 ACAAAAAACA AAAACGCA TCAAAAAAAG chr3L:19527681-19527801 67 1.27e-04 GGTTGGCAGG AAATCGCT AACAAGCAGC chr3R:12712917-12713037 81 1.27e-04 AGCTGCGCTG AAATCGCT AACAAGCCAA chrX:20133571-20133691 86 1.27e-04 CGCCGCAGTA AAATCGCT AGCGATTTCG chr2L:9396502-9396622 50 1.27e-04 CGCGATTTAG AAATCGCT CGGATATCGC chr3R:5705121-5705241 12 1.27e-04 ATTAGCCATA AAATCGCT GGCGATTATA chr3R:9759371-9759491 13 1.68e-04 AATCGCGTCC GAATCGCG CTAAAGTCGC chr3L:12017348-12017468 113 1.68e-04 TGCGCGATTT TAAACGCG chr3L:18993709-18993829 25 1.68e-04 ACCTTTGAGC GAATCGCG CGCAAGCCGC chr2R:7588499-7588619 55 1.68e-04 CTGGCGTCTT TAAACGCG TTCGACTTCA chrX:14098600-14098720 33 1.98e-04 GTGCGTTTCA AAATCGCA TTAATTGTGC chr2R:24829981-24830101 40 1.98e-04 ATTTGCGAGC AAATCGCA AGTTTAGACA chr3L:18994265-18994385 106 1.98e-04 TACGGGGGGA GAAACGCC CACAGTA chrX:12487624-12487744 4 1.98e-04 TCA GAAACGCC AGCGATTCGC chr3R:19839554-19839674 95 2.11e-04 TCGGCAATCA AAAGCGCG TTGGGCCAAT chrX:11543469-11543589 52 2.11e-04 AATTAAAAAC AAAGCGCG CGCGACGCCC chr2L:7542519-7542639 13 2.26e-04 AAATATCTTG AAAAGGCG ATTTCTTTGA chr2L:9393423-9393543 70 2.26e-04 GGCGTAAAAA AAAAGGCG AATAGAATGG chr2L:7368940-7369060 91 2.39e-04 ACAGCGATGC AAGTCGCG ATGTGGCAAC chr3R:15024341-15024461 47 2.39e-04 CACGCGGTTA AAGTCGCG TCGAAGTCGC chr2L:16367369-16367489 18 2.68e-04 TTAACGTCAA AAACCGCG CGTTTCCCTC chr2L:492350-492470 94 2.96e-04 CTTGCACAGT AAGACGCC ATCTATATCT chr2L:5338393-5338513 98 2.96e-04 CGCGCGGTTT TAATCGCG CGCAACACGA chr3L:13489492-13489612 42 2.96e-04 TAAATATTTG AAGACGCC GCCGCCGTCG chr3L:7732488-7732608 48 2.96e-04 CACGCGTTTA TAATCGCG TCGTAAGTCT chrX:12760586-12760706 37 3.25e-04 AGCGTCTATA GAATCGCC GGCGCGACTT chr3L:18992968-18993088 34 3.25e-04 CGGCTCGTCG GAATCGCC GATTTCTCGA chrX:11547076-11547196 71 3.25e-04 TGCGCGTTTT TAAACGCC ACCTTATTTG chr3L:16569160-16569280 103 3.39e-04 CGTCCCCTTC AAATGGCG CATATATCAT chr3L:7733598-7733718 104 3.39e-04 TCCTCCACCC AAATGGCG GGCATCAAA chr2L:5207290-5207410 107 4.00e-04 ACTATTGGAG AAAACGTG GCATCA chrX:19172186-19172306 50 4.00e-04 ATCGAGCTCC AAAGCGCC AAATTGAGCG chr2R:18817615-18817735 6 4.00e-04 TATGC AAAACGTG CTGTTTGGCT chr3R:28682106-28682226 11 4.00e-04 AGTCGCGCTT GAAACGCA CGTGCAAAAG chrX:17018321-17018441 107 4.00e-04 GAACTGAGCG AAGACGCT GCGGAA chr3L:1576646-1576766 56 4.47e-04 TAAACCGCAG GAATCGCT CGCGTTTTTT chr3R:30566320-30566440 62 5.16e-04 GTGGCGGTTT TAATCGCC CAGAAATAGC chr3R:16335778-16335898 6 6.13e-04 ATGGG GAATCGCA TGAATCGTCG chr2L:7074021-7074141 46 6.13e-04 TTCGCCCAGA GAATCGCA TAGAGTTCGT chr3L:12026521-12026641 2 6.13e-04 A AAGTCGCT TCACCGCCAG chr3R:22632320-22632440 38 6.13e-04 CATAATTTTG AAGTCGCT AGCGATTTGC chr2L:7542224-7542344 59 6.54e-04 AGCGCGTTTA AAACCGCT GGAAATGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13450430-13450550 1.5e-05 82_[+1]_30 chr2L:7702817-7702937 1.5e-05 87_[+1]_25 chr3R:17231845-17231965 1.5e-05 108_[+1]_4 chr3L:7781887-7782007 1.5e-05 76_[+1]_36 chr3R:10614078-10614198 1.5e-05 23_[+1]_89 chr3L:16572319-16572439 1.5e-05 82_[+1]_30 chr3R:21434018-21434138 1.5e-05 48_[+1]_64 chrX:13946816-13946936 1.5e-05 37_[+1]_75 chr3R:16356961-16357081 1.5e-05 51_[+1]_61 chrX:13221571-13221691 1.5e-05 54_[+1]_58 chrX:19162654-19162774 1.5e-05 45_[+1]_67 chr2R:8316794-8316914 1.5e-05 68_[+1]_44 chr3L:4490841-4490961 1.5e-05 48_[+1]_64 chr3L:19136441-19136561 1.5e-05 95_[+1]_17 chrX:13932933-13933053 1.5e-05 13_[+1]_99 chr3L:19525875-19525995 1.5e-05 107_[+1]_5 chr2R:19628681-19628801 1.5e-05 101_[+1]_11 chr3R:5777687-5777807 1.5e-05 63_[+1]_49 chrX:15643339-15643459 1.5e-05 63_[+1]_49 chr2R:11726615-11726735 1.5e-05 20_[+1]_92 chr3L:10365780-10365900 1.5e-05 22_[+1]_90 chr3R:23472150-23472270 1.5e-05 59_[+1]_53 chr3R:8223337-8223457 1.5e-05 26_[+1]_86 chr2R:18819121-18819241 1.5e-05 54_[+1]_58 chr3L:19528686-19528806 1.5e-05 101_[+1]_11 chr2R:20611125-20611245 1.5e-05 28_[+1]_84 chrX:21126929-21127049 1.5e-05 30_[+1]_82 chr2L:13630082-13630202 1.5e-05 34_[+1]_78 chr3R:19101420-19101540 1.5e-05 61_[+1]_51 chr3L:19497274-19497394 1.5e-05 66_[+1]_46 chrX:7475343-7475463 1.5e-05 35_[+1]_77 chr3L:12023276-12023396 1.5e-05 26_[+1]_86 chr3R:19839341-19839461 1.5e-05 79_[+1]_33 chrX:15616157-15616277 1.5e-05 59_[+1]_53 chrX:4453077-4453197 1.5e-05 63_[+1]_49 chr3R:7991585-7991705 1.5e-05 76_[+1]_36 chrX:16932628-16932748 1.5e-05 75_[+1]_37 chr2L:7140228-7140348 1.5e-05 2_[+1]_110 chr3R:24956327-24956447 1.5e-05 95_[+1]_17 chr2R:13583578-13583698 1.5e-05 84_[+1]_28 chrX:8958400-8958520 1.5e-05 59_[+1]_53 chr2L:5617363-5617483 1.5e-05 84_[+1]_28 chrX:11511438-11511558 1.5e-05 41_[+1]_71 chrX:1094521-1094641 1.5e-05 66_[+1]_46 chr3R:12387104-12387224 1.5e-05 84_[+1]_28 chr2R:17081246-17081366 1.5e-05 89_[+1]_23 chrX:18942119-18942239 1.5e-05 83_[+1]_29 chr3R:11831326-11831446 1.5e-05 52_[+1]_60 chr2R:15825174-15825294 1.5e-05 65_[+1]_47 chr2L:8215669-8215789 1.5e-05 37_[+1]_75 chr2L:5229378-5229498 1.5e-05 56_[+1]_56 chr2R:11724582-11724702 3e-05 83_[+1]_29 chrX:334719-334839 3e-05 11_[+1]_101 chr2L:12343739-12343859 3e-05 89_[+1]_23 chrX:20129529-20129649 3e-05 59_[+1]_53 chr3R:19152259-19152379 3e-05 55_[+1]_57 chr3R:7991790-7991910 3e-05 7_[+1]_105 chr3R:16335577-16335697 3e-05 40_[+1]_72 chr2R:8578445-8578565 3e-05 80_[+1]_32 chrX:12012868-12012988 3e-05 10_[+1]_102 chrX:19020201-19020321 3e-05 32_[+1]_80 chr3R:23738166-23738286 4.6e-05 41_[+1]_71 chr3R:6973529-6973649 4.6e-05 22_[+1]_90 chr3L:16981273-16981393 4.6e-05 5_[+1]_107 chrX:14749249-14749369 4.6e-05 42_[+1]_70 chr2R:13585945-13586065 4.6e-05 18_[+1]_94 chr3R:31246857-31246977 4.6e-05 99_[+1]_13 chr3L:19521232-19521352 4.6e-05 84_[+1]_28 chr3R:30830577-30830697 4.6e-05 38_[+1]_74 chr3R:14425622-14425742 4.6e-05 26_[+1]_86 chr3R:15999080-15999200 4.6e-05 21_[+1]_91 chr2R:24557579-24557699 4.6e-05 92_[+1]_20 chr2R:14023916-14024036 6.3e-05 100_[+1]_12 chr2L:6276325-6276445 6.3e-05 86_[+1]_26 chr2L:5233288-5233408 6.3e-05 65_[+1]_47 chr3L:2893939-2894059 6.3e-05 31_[+1]_81 chr3R:14425831-14425951 6.3e-05 81_[+1]_31 chr3R:16537446-16537566 6.3e-05 87_[+1]_25 chr2R:7087820-7087940 6.3e-05 91_[+1]_21 chr2L:6705154-6705274 6.3e-05 16_[+1]_96 chr3L:19528897-19529017 7.9e-05 34_[+1]_78 chr3R:9886180-9886300 7.9e-05 9_[+1]_103 chr2R:11487130-11487250 7.9e-05 78_[+1]_34 chr3R:25762144-25762264 7.9e-05 64_[+1]_48 chr3L:20984948-20985068 7.9e-05 54_[+1]_58 chrX:19175311-19175431 7.9e-05 67_[+1]_45 chr2R:14006248-14006368 9.2e-05 106_[+1]_6 chr3L:13266217-13266337 9.2e-05 30_[+1]_82 chr3L:9125060-9125180 0.00011 29_[+1]_83 chr3R:13999381-13999501 0.00011 29_[+1]_83 chr3R:15316494-15316614 0.00011 48_[+1]_64 chr3L:6574375-6574495 0.00011 37_[+1]_75 chr3L:19527681-19527801 0.00013 66_[+1]_46 chr3R:12712917-12713037 0.00013 80_[+1]_32 chrX:20133571-20133691 0.00013 85_[+1]_27 chr2L:9396502-9396622 0.00013 49_[+1]_63 chr3R:5705121-5705241 0.00013 11_[+1]_101 chr3R:9759371-9759491 0.00017 12_[+1]_100 chr3L:12017348-12017468 0.00017 112_[+1] chr3L:18993709-18993829 0.00017 24_[+1]_88 chr2R:7588499-7588619 0.00017 54_[+1]_58 chrX:14098600-14098720 0.0002 32_[+1]_80 chr2R:24829981-24830101 0.0002 39_[+1]_73 chr3L:18994265-18994385 0.0002 105_[+1]_7 chrX:12487624-12487744 0.0002 3_[+1]_109 chr3R:19839554-19839674 0.00021 94_[+1]_18 chrX:11543469-11543589 0.00021 51_[+1]_61 chr2L:7542519-7542639 0.00023 12_[+1]_100 chr2L:9393423-9393543 0.00023 69_[+1]_43 chr2L:7368940-7369060 0.00024 90_[+1]_22 chr3R:15024341-15024461 0.00024 46_[+1]_66 chr2L:16367369-16367489 0.00027 17_[+1]_95 chr2L:492350-492470 0.0003 93_[+1]_19 chr2L:5338393-5338513 0.0003 97_[+1]_15 chr3L:13489492-13489612 0.0003 41_[+1]_71 chr3L:7732488-7732608 0.0003 47_[+1]_65 chrX:12760586-12760706 0.00032 36_[+1]_76 chr3L:18992968-18993088 0.00032 33_[+1]_79 chrX:11547076-11547196 0.00032 70_[+1]_42 chr3L:16569160-16569280 0.00034 102_[+1]_10 chr3L:7733598-7733718 0.00034 103_[+1]_9 chr2L:5207290-5207410 0.0004 106_[+1]_6 chrX:19172186-19172306 0.0004 49_[+1]_63 chr2R:18817615-18817735 0.0004 5_[+1]_107 chr3R:28682106-28682226 0.0004 10_[+1]_102 chrX:17018321-17018441 0.0004 106_[+1]_6 chr3L:1576646-1576766 0.00045 55_[+1]_57 chr3R:30566320-30566440 0.00052 61_[+1]_51 chr3R:16335778-16335898 0.00061 5_[+1]_107 chr2L:7074021-7074141 0.00061 45_[+1]_67 chr3L:12026521-12026641 0.00061 1_[+1]_111 chr3R:22632320-22632440 0.00061 37_[+1]_75 chr2L:7542224-7542344 0.00065 58_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACGCG width=8 seqs=133 chr3R:13450430-13450550 ( 83) AAAACGCG 1 chr2L:7702817-7702937 ( 88) AAAACGCG 1 chr3R:17231845-17231965 ( 109) AAAACGCG 1 chr3L:7781887-7782007 ( 77) AAAACGCG 1 chr3R:10614078-10614198 ( 24) AAAACGCG 1 chr3L:16572319-16572439 ( 83) AAAACGCG 1 chr3R:21434018-21434138 ( 49) AAAACGCG 1 chrX:13946816-13946936 ( 38) AAAACGCG 1 chr3R:16356961-16357081 ( 52) AAAACGCG 1 chrX:13221571-13221691 ( 55) AAAACGCG 1 chrX:19162654-19162774 ( 46) AAAACGCG 1 chr2R:8316794-8316914 ( 69) AAAACGCG 1 chr3L:4490841-4490961 ( 49) AAAACGCG 1 chr3L:19136441-19136561 ( 96) AAAACGCG 1 chrX:13932933-13933053 ( 14) AAAACGCG 1 chr3L:19525875-19525995 ( 108) AAAACGCG 1 chr2R:19628681-19628801 ( 102) AAAACGCG 1 chr3R:5777687-5777807 ( 64) AAAACGCG 1 chrX:15643339-15643459 ( 64) AAAACGCG 1 chr2R:11726615-11726735 ( 21) AAAACGCG 1 chr3L:10365780-10365900 ( 23) AAAACGCG 1 chr3R:23472150-23472270 ( 60) AAAACGCG 1 chr3R:8223337-8223457 ( 27) AAAACGCG 1 chr2R:18819121-18819241 ( 55) AAAACGCG 1 chr3L:19528686-19528806 ( 102) AAAACGCG 1 chr2R:20611125-20611245 ( 29) AAAACGCG 1 chrX:21126929-21127049 ( 31) AAAACGCG 1 chr2L:13630082-13630202 ( 35) AAAACGCG 1 chr3R:19101420-19101540 ( 62) AAAACGCG 1 chr3L:19497274-19497394 ( 67) AAAACGCG 1 chrX:7475343-7475463 ( 36) AAAACGCG 1 chr3L:12023276-12023396 ( 27) AAAACGCG 1 chr3R:19839341-19839461 ( 80) AAAACGCG 1 chrX:15616157-15616277 ( 60) AAAACGCG 1 chrX:4453077-4453197 ( 64) AAAACGCG 1 chr3R:7991585-7991705 ( 77) AAAACGCG 1 chrX:16932628-16932748 ( 76) AAAACGCG 1 chr2L:7140228-7140348 ( 3) AAAACGCG 1 chr3R:24956327-24956447 ( 96) AAAACGCG 1 chr2R:13583578-13583698 ( 85) AAAACGCG 1 chrX:8958400-8958520 ( 60) AAAACGCG 1 chr2L:5617363-5617483 ( 85) AAAACGCG 1 chrX:11511438-11511558 ( 42) AAAACGCG 1 chrX:1094521-1094641 ( 67) AAAACGCG 1 chr3R:12387104-12387224 ( 85) AAAACGCG 1 chr2R:17081246-17081366 ( 90) AAAACGCG 1 chrX:18942119-18942239 ( 84) AAAACGCG 1 chr3R:11831326-11831446 ( 53) AAAACGCG 1 chr2R:15825174-15825294 ( 66) AAAACGCG 1 chr2L:8215669-8215789 ( 38) AAAACGCG 1 chr2L:5229378-5229498 ( 57) AAAACGCG 1 chr2R:11724582-11724702 ( 84) AAATCGCG 1 chrX:334719-334839 ( 12) AAATCGCG 1 chr2L:12343739-12343859 ( 90) AAATCGCG 1 chrX:20129529-20129649 ( 60) AAATCGCG 1 chr3R:19152259-19152379 ( 56) AAATCGCG 1 chr3R:7991790-7991910 ( 8) AAATCGCG 1 chr3R:16335577-16335697 ( 41) AAATCGCG 1 chr2R:8578445-8578565 ( 81) AAATCGCG 1 chrX:12012868-12012988 ( 11) AAATCGCG 1 chrX:19020201-19020321 ( 33) AAATCGCG 1 chr3R:23738166-23738286 ( 42) AAAACGCC 1 chr3R:6973529-6973649 ( 23) AAAACGCC 1 chr3L:16981273-16981393 ( 6) AAAACGCC 1 chrX:14749249-14749369 ( 43) AAAACGCC 1 chr2R:13585945-13586065 ( 19) AAAACGCC 1 chr3R:31246857-31246977 ( 100) AAAACGCC 1 chr3L:19521232-19521352 ( 85) AAAACGCC 1 chr3R:30830577-30830697 ( 39) AAAACGCC 1 chr3R:14425622-14425742 ( 27) AAAACGCC 1 chr3R:15999080-15999200 ( 22) AAAACGCC 1 chr2R:24557579-24557699 ( 93) AAAACGCC 1 chr2R:14023916-14024036 ( 101) AAAACGCT 1 chr2L:6276325-6276445 ( 87) AAAACGCT 1 chr2L:5233288-5233408 ( 66) AAAACGCT 1 chr3L:2893939-2894059 ( 32) AAAACGCT 1 chr3R:14425831-14425951 ( 82) AAAACGCT 1 chr3R:16537446-16537566 ( 88) AAAACGCT 1 chr2R:7087820-7087940 ( 92) AAAACGCT 1 chr2L:6705154-6705274 ( 17) AAAACGCT 1 chr3L:19528897-19529017 ( 35) AAATCGCC 1 chr3R:9886180-9886300 ( 10) AAATCGCC 1 chr2R:11487130-11487250 ( 79) AAATCGCC 1 chr3R:25762144-25762264 ( 65) AAATCGCC 1 chr3L:20984948-20985068 ( 55) AAATCGCC 1 chrX:19175311-19175431 ( 68) AAATCGCC 1 chr2R:14006248-14006368 ( 107) GAAACGCG 1 chr3L:13266217-13266337 ( 31) GAAACGCG 1 chr3L:9125060-9125180 ( 30) AAAACGCA 1 chr3R:13999381-13999501 ( 30) AAAACGCA 1 chr3R:15316494-15316614 ( 49) AAAACGCA 1 chr3L:6574375-6574495 ( 38) AAAACGCA 1 chr3L:19527681-19527801 ( 67) AAATCGCT 1 chr3R:12712917-12713037 ( 81) AAATCGCT 1 chrX:20133571-20133691 ( 86) AAATCGCT 1 chr2L:9396502-9396622 ( 50) AAATCGCT 1 chr3R:5705121-5705241 ( 12) AAATCGCT 1 chr3R:9759371-9759491 ( 13) GAATCGCG 1 chr3L:12017348-12017468 ( 113) TAAACGCG 1 chr3L:18993709-18993829 ( 25) GAATCGCG 1 chr2R:7588499-7588619 ( 55) TAAACGCG 1 chrX:14098600-14098720 ( 33) AAATCGCA 1 chr2R:24829981-24830101 ( 40) AAATCGCA 1 chr3L:18994265-18994385 ( 106) GAAACGCC 1 chrX:12487624-12487744 ( 4) GAAACGCC 1 chr3R:19839554-19839674 ( 95) AAAGCGCG 1 chrX:11543469-11543589 ( 52) AAAGCGCG 1 chr2L:7542519-7542639 ( 13) AAAAGGCG 1 chr2L:9393423-9393543 ( 70) AAAAGGCG 1 chr2L:7368940-7369060 ( 91) AAGTCGCG 1 chr3R:15024341-15024461 ( 47) AAGTCGCG 1 chr2L:16367369-16367489 ( 18) AAACCGCG 1 chr2L:492350-492470 ( 94) AAGACGCC 1 chr2L:5338393-5338513 ( 98) TAATCGCG 1 chr3L:13489492-13489612 ( 42) AAGACGCC 1 chr3L:7732488-7732608 ( 48) TAATCGCG 1 chrX:12760586-12760706 ( 37) GAATCGCC 1 chr3L:18992968-18993088 ( 34) GAATCGCC 1 chrX:11547076-11547196 ( 71) TAAACGCC 1 chr3L:16569160-16569280 ( 103) AAATGGCG 1 chr3L:7733598-7733718 ( 104) AAATGGCG 1 chr2L:5207290-5207410 ( 107) AAAACGTG 1 chrX:19172186-19172306 ( 50) AAAGCGCC 1 chr2R:18817615-18817735 ( 6) AAAACGTG 1 chr3R:28682106-28682226 ( 11) GAAACGCA 1 chrX:17018321-17018441 ( 107) AAGACGCT 1 chr3L:1576646-1576766 ( 56) GAATCGCT 1 chr3R:30566320-30566440 ( 62) TAATCGCC 1 chr3R:16335778-16335898 ( 6) GAATCGCA 1 chr2L:7074021-7074141 ( 46) GAATCGCA 1 chr3L:12026521-12026641 ( 2) AAGTCGCT 1 chr3R:22632320-22632440 ( 38) AAGTCGCT 1 chr2L:7542224-7542344 ( 59) AAACCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.50029 E= 5.0e-114 170 -1370 -135 -256 191 -1370 -1370 -1370 183 -1370 -213 -1370 133 -398 -335 14 -1370 203 -293 -1370 -1370 -1370 212 -1370 -1370 206 -1370 -415 -198 -28 139 -98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 5.0e-114 0.864662 0.000000 0.090226 0.045113 1.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.052632 0.000000 0.669173 0.015038 0.022556 0.293233 0.000000 0.969925 0.030075 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.984962 0.000000 0.015038 0.067669 0.195489 0.601504 0.135338 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACGCG MEME-1 regular expression -------------------------------------------------------------------------------- AAA[AT]CGCG -------------------------------------------------------------------------------- Time 8.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGWTTT MEME-2 width = 8 sites = 124 llr = 1001 E-value = 4.8e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::3::1 pos.-specific C 6:a::1:: probability G 2a:a1::: matrix T 1:::69a8 bits 2.1 ** 1.9 *** * 1.7 *** * 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** *** (11.7 bits) 0.8 *** *** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGTTTT consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1576646-1576766 64 1.49e-05 AGGAATCGCT CGCGTTTT TTGTCGCGGC chr3L:19939233-19939353 86 1.49e-05 TTCAGGCGGT CGCGTTTT TCGCGCGTTT chrX:13946816-13946936 28 1.49e-05 GCGTTTTGTT CGCGTTTT AAAAAACGCG chrX:8995155-8995275 58 1.49e-05 AATTGCATGA CGCGTTTT ACACGCGAGT chrX:13221571-13221691 46 1.49e-05 ACGGGTTTGA CGCGTTTT AAAAACGCGC chr3R:8118155-8118275 71 1.49e-05 GCGTTTACGG CGCGTTTT ATGCGCGATT chr3R:22633173-22633293 27 1.49e-05 CGCATGCGCG CGCGTTTT TTTCAACGCG chr2R:8316794-8316914 79 1.49e-05 AAAACGCGGG CGCGTTTT TGGATAATGA chrX:11547076-11547196 63 1.49e-05 GCGTTTTGTG CGCGTTTT TAAACGCCAC chr2L:5259357-5259477 65 1.49e-05 GCGAGTCGCG CGCGTTTT TGGCGCGGCG chr3R:14214970-14215090 60 1.49e-05 GTTCCAACGA CGCGTTTT CCCAGCGTTT chr2R:24829781-24829901 22 1.49e-05 GCGGGTTGCA CGCGTTTT GCTGGCGATT chr2R:7588698-7588818 19 1.49e-05 CTGGTTGGGA CGCGTTTT TGGATGGAGC chr2L:19948115-19948235 15 1.49e-05 TTCGATTTGG CGCGTTTT TAAAGCGGTT chr2L:6276120-6276240 59 1.49e-05 GCGTTTCTGG CGCGTTTT GCTCGCTATT chr3L:19521232-19521352 106 1.49e-05 GTAATTGTGA CGCGTTTT TCGCAGA chrX:15175623-15175743 84 1.49e-05 CGTGTTTTTC CGCGTTTT AGCATTGTTG chrX:11543469-11543589 82 1.49e-05 GCGATTTGTG CGCGTTTT TTGCCGCTTC chr2R:8578445-8578565 89 1.49e-05 GAAAATCGCG CGCGTTTT CCGAGCTTTT chr3R:19839341-19839461 61 1.49e-05 TCCCATCGCA CGCGTTTT CCTGGCGATT chrX:4453077-4453197 72 1.49e-05 AGAAAACGCG CGCGTTTT TAAACGCCCT chr2L:7140228-7140348 45 1.49e-05 TTATCTTGCG CGCGTTTT CCTCGCGTTT chr2R:14413866-14413986 71 1.49e-05 GCGATTTGGC CGCGTTTT TAGCAGTATA chr3L:12022005-12022125 65 1.49e-05 GGCGTTTGTG CGCGTTTT TTGTCGCCCG chrX:12012868-12012988 63 1.49e-05 TTTATTCAGA CGCGTTTT GGACGCGACT chrX:11246004-11246124 36 1.49e-05 GAACCGCAGG CGCGTTTT ACGAGCGTTT chrX:6541091-6541211 20 1.49e-05 AAGTAGCGCC CGCGTTTT TAACCGCGCG chrX:17018321-17018441 43 1.49e-05 TTTCCGCTCG CGCGTTTT CCGTGCGACT chr3R:6411944-6412064 77 1.49e-05 GCATGACGCG CGCGTTTT TCGTGCTGCT chrX:3127703-3127823 108 1.49e-05 gcgtttcgag cgcgtttt cagcg chrX:8366468-8366588 69 1.49e-05 GCGTTTTGTG CGCGTTTT GCCCGCGTTT chr2R:15825174-15825294 34 1.49e-05 GAGCGGCGCG CGCGTTTT TTGCCGCGCC chr3L:16891225-16891345 56 2.98e-05 GTTTATTCCC CGCGATTT GCGCGCGATT chr3L:12017348-12017468 105 2.98e-05 AAAGTTCCTG CGCGATTT TAAACGCG chr3R:16356961-16357081 10 2.98e-05 CGACTTGCG CGCGATTT CGATGTGAGT chr3L:1928377-1928497 33 2.98e-05 TTGCGACCAA CGCGATTT ATGGGCGGTT chr3L:13489492-13489612 85 2.98e-05 GCGATTTGTG CGCGATTT TTTGGCCATG chr3L:19528686-19528806 73 2.98e-05 GTTGCACTCG CGCGATTT TCAGGCATTC chrX:21126929-21127049 63 2.98e-05 CTTGGAAACA CGCGATTT AATCAGCTGT chr3R:16334936-16335056 103 2.98e-05 TAATGTTTGA CGCGATTT GCTGGCTTTT chr2L:16367369-16367489 35 2.98e-05 GCGTTTCCCT CGCGATTT TGATGTATCA chr2L:7368940-7369060 61 2.98e-05 CGTAGATCAA CGCGATTT CGACGCGATT chr3R:17125806-17125926 104 2.98e-05 TCGACTTGCA CGCGATTT GTTAGCGGC chr3R:14425622-14425742 87 2.98e-05 GCGTTTTGTA CGCGATTT GTGGGTGCTC chr2L:9396502-9396622 40 2.98e-05 TCCCATTCTG CGCGATTT AGAAATCGCT chrX:13645043-13645163 64 4.42e-05 GTTACGTTTG GGCGTTTT TCTGTCGATT chrX:15621167-15621287 2 4.42e-05 G GGCGTTTT CAGCGCAAAG chr2L:7074021-7074141 9 4.42e-05 CATTTCAT GGCGTTTT GTTCGGCTTG chr3L:19136441-19136561 88 4.42e-05 GCTGCTTTGG GGCGTTTT AAAACGCGCG chr3L:19525875-19525995 100 4.42e-05 GCTTTTTCTT GGCGTTTT AAAACGCGCT chr3L:19497274-19497394 59 4.42e-05 CAGCGATTGA GGCGTTTT AAAACGCGGT chrX:2350031-2350151 42 4.42e-05 GCGACTCGCG GGCGTTTT TTGTCGCGTG chr3R:6973529-6973649 94 7.16e-05 GATAATTTGA GGCGATTT TTACAGCGTA chr3L:16981273-16981393 58 7.16e-05 GCGCCGACGA GGCGATTT TAAACGCCAG chr3R:28704208-28704328 81 7.16e-05 CCGTTCTCGC CGCGGTTT TTCCGACCAG chr2L:5338393-5338513 90 7.16e-05 CGCCGTTTCG CGCGGTTT TAATCGCGCG chr3L:18994265-18994385 50 7.16e-05 GCGATTTCCT GGCGATTT CACGTTCTTG chr2R:19628681-19628801 112 7.16e-05 AAAACGCGCG CGCGGTTT T chr2R:11726615-11726735 31 7.16e-05 AAAACGCGTG GGCGATTT TCGAATATTT chr3R:7991585-7991705 51 7.16e-05 TGAAATCGCA GGCGATTT CCTAACCGAG chr2R:24557579-24557699 63 7.16e-05 gacTGCAGCT GGCGATTT GCGCGCGTTT chr2L:5223456-5223576 78 7.16e-05 GCGTTTCCCT CGCGGTTT TTATCGCGCC chr3R:22632320-22632440 87 7.16e-05 ATGGTTTTTA CGCGGTTT TTAGCTATGA chrX:8939282-8939402 94 1.03e-04 GCGTTTCGCG TGCGTTTT TTAACTCGCC chr3R:9886180-9886300 2 1.03e-04 G TGCGTTTT AAATCGCCCG chr3R:31246857-31246977 65 1.03e-04 CAATGGCGAA TGCGTTTT TAAACGCCTA chr3L:8798710-8798830 19 1.03e-04 GAAAGATGTG TGCGTTTT TCCTGCGACT chrX:20129529-20129649 41 1.03e-04 ACTGAACGGC TGCGTTTT AAACAGCGCC chr2L:7542224-7542344 51 1.03e-04 ACGCTGATAG CGCGTTTA AAACCGCTGG chr2R:7588499-7588619 36 1.03e-04 GCGATTCTGC TGCGTTTT GCTGGCGTCT chr2L:5227030-5227150 18 1.03e-04 CAACGTCGCA TGCGTTTT AATTAAGTGT chr2R:11487130-11487250 71 1.03e-04 TTAACGCGCT CGCGTTTA AAATCGCCTG chr2R:14006248-14006368 71 1.03e-04 TCTCGCCGGT CGCGTTTA AAACCGCATT chrX:20133571-20133691 105 1.03e-04 GCGATTTCGG CGCGTTTA CTTAACCG chr3L:13266217-13266337 73 1.03e-04 TGGCGACGCA CGCGTTTA AAACAGCCCC chr3L:18992968-18993088 85 1.16e-04 GCGATAAGCA CGCGTCTT TAGTCGCTCC chr2R:17081246-17081366 100 1.16e-04 AAAACGCGAA CGCGTCTT TAGTCGCGGG chr2L:7071358-7071478 81 1.33e-04 GCGATTCGGT AGCGTTTT CGATCGCCCA chr3L:16568960-16569080 60 1.33e-04 TCGCTTTTCC AGCGTTTT GCTAGCGGTT chr3L:20984948-20985068 112 1.33e-04 TGTATTTTAA AGCGTTTT T chr3L:7732488-7732608 29 1.33e-04 GCGAGTCGCG AGCGTTTT TCACGCGTTT chr3L:6574375-6574495 60 1.65e-04 AAAAAGTCAA TGCGATTT GCGTGCGATT chr3R:5705121-5705241 36 1.65e-04 TATAAACGCG TGCGATTT GTGTGCGAAT chrX:12760586-12760706 47 1.78e-04 GAATCGCCGG CGCGACTT TATGGCTCGA chrX:21127130-21127250 77 1.78e-04 GTTTCGTTAG CGCGACTT GCTAGTTTTT chr3R:13999381-13999501 11 1.78e-04 GACTTTCACG CGCGACTT TAAACGCTGG chr3R:5777687-5777807 30 1.78e-04 GCGGGAAAGA CGCGACTT TCGGCCGGAG chrX:12487624-12487744 23 1.78e-04 GCGATTCGCG CGCGACTT TGATTAATTG chrX:11526455-11526575 68 1.78e-04 GCGACTCCGA CGCGACTT TCGCAGCCGC chrX:14175802-14175922 16 1.78e-04 AAAAACCACG CGCGACTT GAgtgcggtt chr2L:13630281-13630401 95 1.95e-04 GAATCACCAC AGCGATTT CAGTTTGTTT chr2R:13589340-13589460 72 1.95e-04 GCGTTTCGCT AGCGATTT ACGAGCGATT chr2R:11726816-11726936 6 1.95e-04 TAACC AGCGATTT CTGTGTCGCA chr3R:19101420-19101540 43 1.95e-04 TTCTTGCGTA AGCGATTT TAAACGCATG chr3R:15999080-15999200 56 1.95e-04 ATGTGTGCCC AGCGATTT TAAACGCGTA chr2L:7542738-7542858 87 2.08e-04 ATTTACTACC GGCGGTTT AGACCCGAAT chrX:334719-334839 4 2.08e-04 ACT GGCGGTTT AAATCGCGCT chr3L:18993709-18993829 63 2.08e-04 TTGCAATTGA GGCGGTTT AAGCAGCGGT chr3R:30566320-30566440 54 2.08e-04 TTGCAGCGGT GGCGGTTT TAATCGCCCA chrX:15643339-15643459 45 2.22e-04 GGTCGGCGGA GGCGTTTA AAAACGCTAG chr2R:20611125-20611245 21 2.22e-04 GCGATTACAT GGCGTTTA AAAACGCGTG chr3R:16335577-16335697 22 2.22e-04 TGCAAATTGA GGCGTTTA AAAACGCTTG chr2L:5229378-5229498 49 2.22e-04 CCCAGGCGAA GGCGTTTA AAAACGCGCC chr3L:4490841-4490961 57 2.35e-04 ATAAAACGCG CGCGTTTC GCTAGCGGCC chr2L:13630082-13630202 76 2.35e-04 AGCGGCAGAC CGCGTTTC TCTGACTGCG chr3R:16355170-16355290 68 2.48e-04 TAGTGGCAGC GGCGTCTT TTAGACGCAA chr3R:21434018-21434138 28 2.90e-04 CTTTTCTACG GGCGATTA AAAACGCGTC chrX:15175420-15175540 30 2.90e-04 GCAGTTTGCG TGCGGTTT TCGGAGCAAT chrX:15616362-15616482 74 2.90e-04 GTGGTTCCCC CGCGGTTA TCGCGCACAT chr3R:15024341-15024461 39 2.90e-04 TTAACGCGCA CGCGGTTA AAGTCGCGTC chrX:14098600-14098720 81 3.03e-04 GCGATTGCCG CGCGATTC TGATTCTGAG chr3R:23472150-23472270 70 3.03e-04 AAAACGCGCA CGCGATTC GCCAGCGAAA chrX:4453288-4453408 62 3.45e-04 TGTCGCCTAA TGCGTTTA ATTGTTGCAG chrX:8958400-8958520 52 3.45e-04 AAATTTACGA TGCGTTTA AAAACGCGCA chrX:15292616-15292736 98 4.03e-04 TTAAGTTCAG CGCCTTTT TCATTAAAAT chr3R:16335778-16335898 57 4.03e-04 ATGTCGGAGA CGCCTTTT CCACTCATTA chr3L:2893939-2894059 58 4.03e-04 TCGGTCGTTT CGCCTTTT GGTTGTGATC chr3L:10365780-10365900 4 4.36e-04 GAG TGCGATTA AAAACGCTAT chrX:11511438-11511558 85 4.36e-04 tgatcatgat tgcgatta tgatcgtgat chrX:19020201-19020321 14 5.08e-04 AAGCCGCCAG CGCGACTA AAAACGCTGG chrX:18942119-18942239 94 5.08e-04 AAAACGCGCG CGCGACTA ATGATACAAT chr3L:16572319-16572439 27 5.76e-04 AGCCGTTTCA AGCGACTT GACCGCTCAC chrX:1094521-1094641 37 5.76e-04 ACAGCAAGGC GGCGATTC ACGCGCTGTA chr2R:13592310-13592430 98 5.88e-04 GTTGCTGGCG GGCGGCTT AGTGTGTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1576646-1576766 1.5e-05 63_[+2]_49 chr3L:19939233-19939353 1.5e-05 85_[+2]_27 chrX:13946816-13946936 1.5e-05 27_[+2]_85 chrX:8995155-8995275 1.5e-05 57_[+2]_55 chrX:13221571-13221691 1.5e-05 45_[+2]_67 chr3R:8118155-8118275 1.5e-05 70_[+2]_42 chr3R:22633173-22633293 1.5e-05 26_[+2]_86 chr2R:8316794-8316914 1.5e-05 78_[+2]_34 chrX:11547076-11547196 1.5e-05 62_[+2]_50 chr2L:5259357-5259477 1.5e-05 64_[+2]_48 chr3R:14214970-14215090 1.5e-05 59_[+2]_53 chr2R:24829781-24829901 1.5e-05 21_[+2]_91 chr2R:7588698-7588818 1.5e-05 18_[+2]_94 chr2L:19948115-19948235 1.5e-05 14_[+2]_98 chr2L:6276120-6276240 1.5e-05 58_[+2]_54 chr3L:19521232-19521352 1.5e-05 105_[+2]_7 chrX:15175623-15175743 1.5e-05 83_[+2]_29 chrX:11543469-11543589 1.5e-05 81_[+2]_31 chr2R:8578445-8578565 1.5e-05 88_[+2]_24 chr3R:19839341-19839461 1.5e-05 60_[+2]_52 chrX:4453077-4453197 1.5e-05 71_[+2]_41 chr2L:7140228-7140348 1.5e-05 44_[+2]_68 chr2R:14413866-14413986 1.5e-05 70_[+2]_42 chr3L:12022005-12022125 1.5e-05 64_[+2]_48 chrX:12012868-12012988 1.5e-05 62_[+2]_50 chrX:11246004-11246124 1.5e-05 35_[+2]_77 chrX:6541091-6541211 1.5e-05 19_[+2]_93 chrX:17018321-17018441 1.5e-05 42_[+2]_70 chr3R:6411944-6412064 1.5e-05 76_[+2]_36 chrX:3127703-3127823 1.5e-05 107_[+2]_5 chrX:8366468-8366588 1.5e-05 68_[+2]_44 chr2R:15825174-15825294 1.5e-05 33_[+2]_79 chr3L:16891225-16891345 3e-05 55_[+2]_57 chr3L:12017348-12017468 3e-05 104_[+2]_8 chr3R:16356961-16357081 3e-05 9_[+2]_103 chr3L:1928377-1928497 3e-05 32_[+2]_80 chr3L:13489492-13489612 3e-05 84_[+2]_28 chr3L:19528686-19528806 3e-05 72_[+2]_40 chrX:21126929-21127049 3e-05 62_[+2]_50 chr3R:16334936-16335056 3e-05 102_[+2]_10 chr2L:16367369-16367489 3e-05 34_[+2]_78 chr2L:7368940-7369060 3e-05 60_[+2]_52 chr3R:17125806-17125926 3e-05 103_[+2]_9 chr3R:14425622-14425742 3e-05 86_[+2]_26 chr2L:9396502-9396622 3e-05 39_[+2]_73 chrX:13645043-13645163 4.4e-05 63_[+2]_49 chrX:15621167-15621287 4.4e-05 1_[+2]_111 chr2L:7074021-7074141 4.4e-05 8_[+2]_104 chr3L:19136441-19136561 4.4e-05 87_[+2]_25 chr3L:19525875-19525995 4.4e-05 99_[+2]_13 chr3L:19497274-19497394 4.4e-05 58_[+2]_54 chrX:2350031-2350151 4.4e-05 41_[+2]_71 chr3R:6973529-6973649 7.2e-05 93_[+2]_19 chr3L:16981273-16981393 7.2e-05 57_[+2]_55 chr3R:28704208-28704328 7.2e-05 80_[+2]_32 chr2L:5338393-5338513 7.2e-05 89_[+2]_23 chr3L:18994265-18994385 7.2e-05 49_[+2]_63 chr2R:19628681-19628801 7.2e-05 111_[+2]_1 chr2R:11726615-11726735 7.2e-05 30_[+2]_82 chr3R:7991585-7991705 7.2e-05 50_[+2]_62 chr2R:24557579-24557699 7.2e-05 62_[+2]_50 chr2L:5223456-5223576 7.2e-05 77_[+2]_35 chr3R:22632320-22632440 7.2e-05 86_[+2]_26 chrX:8939282-8939402 0.0001 93_[+2]_19 chr3R:9886180-9886300 0.0001 1_[+2]_111 chr3R:31246857-31246977 0.0001 64_[+2]_48 chr3L:8798710-8798830 0.0001 18_[+2]_94 chrX:20129529-20129649 0.0001 40_[+2]_72 chr2L:7542224-7542344 0.0001 50_[+2]_62 chr2R:7588499-7588619 0.0001 35_[+2]_77 chr2L:5227030-5227150 0.0001 17_[+2]_95 chr2R:11487130-11487250 0.0001 70_[+2]_42 chr2R:14006248-14006368 0.0001 70_[+2]_42 chrX:20133571-20133691 0.0001 104_[+2]_8 chr3L:13266217-13266337 0.0001 72_[+2]_40 chr3L:18992968-18993088 0.00012 84_[+2]_28 chr2R:17081246-17081366 0.00012 99_[+2]_13 chr2L:7071358-7071478 0.00013 80_[+2]_32 chr3L:16568960-16569080 0.00013 59_[+2]_53 chr3L:20984948-20985068 0.00013 111_[+2]_1 chr3L:7732488-7732608 0.00013 28_[+2]_84 chr3L:6574375-6574495 0.00016 59_[+2]_53 chr3R:5705121-5705241 0.00016 35_[+2]_77 chrX:12760586-12760706 0.00018 46_[+2]_66 chrX:21127130-21127250 0.00018 76_[+2]_36 chr3R:13999381-13999501 0.00018 10_[+2]_102 chr3R:5777687-5777807 0.00018 29_[+2]_83 chrX:12487624-12487744 0.00018 22_[+2]_90 chrX:11526455-11526575 0.00018 67_[+2]_45 chrX:14175802-14175922 0.00018 15_[+2]_97 chr2L:13630281-13630401 0.0002 94_[+2]_18 chr2R:13589340-13589460 0.0002 71_[+2]_41 chr2R:11726816-11726936 0.0002 5_[+2]_107 chr3R:19101420-19101540 0.0002 42_[+2]_70 chr3R:15999080-15999200 0.0002 55_[+2]_57 chr2L:7542738-7542858 0.00021 86_[+2]_26 chrX:334719-334839 0.00021 3_[+2]_109 chr3L:18993709-18993829 0.00021 62_[+2]_50 chr3R:30566320-30566440 0.00021 53_[+2]_59 chrX:15643339-15643459 0.00022 44_[+2]_68 chr2R:20611125-20611245 0.00022 20_[+2]_92 chr3R:16335577-16335697 0.00022 21_[+2]_91 chr2L:5229378-5229498 0.00022 48_[+2]_64 chr3L:4490841-4490961 0.00024 56_[+2]_56 chr2L:13630082-13630202 0.00024 75_[+2]_37 chr3R:16355170-16355290 0.00025 67_[+2]_45 chr3R:21434018-21434138 0.00029 27_[+2]_85 chrX:15175420-15175540 0.00029 29_[+2]_83 chrX:15616362-15616482 0.00029 73_[+2]_39 chr3R:15024341-15024461 0.00029 38_[+2]_74 chrX:14098600-14098720 0.0003 80_[+2]_32 chr3R:23472150-23472270 0.0003 69_[+2]_43 chrX:4453288-4453408 0.00034 61_[+2]_51 chrX:8958400-8958520 0.00034 51_[+2]_61 chrX:15292616-15292736 0.0004 97_[+2]_15 chr3R:16335778-16335898 0.0004 56_[+2]_56 chr3L:2893939-2894059 0.0004 57_[+2]_55 chr3L:10365780-10365900 0.00044 3_[+2]_109 chrX:11511438-11511558 0.00044 84_[+2]_28 chrX:19020201-19020321 0.00051 13_[+2]_99 chrX:18942119-18942239 0.00051 93_[+2]_19 chr3L:16572319-16572439 0.00058 26_[+2]_86 chrX:1094521-1094641 0.00058 36_[+2]_76 chr2R:13592310-13592430 0.00059 97_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGWTTT width=8 seqs=124 chr3L:1576646-1576766 ( 64) CGCGTTTT 1 chr3L:19939233-19939353 ( 86) CGCGTTTT 1 chrX:13946816-13946936 ( 28) CGCGTTTT 1 chrX:8995155-8995275 ( 58) CGCGTTTT 1 chrX:13221571-13221691 ( 46) CGCGTTTT 1 chr3R:8118155-8118275 ( 71) CGCGTTTT 1 chr3R:22633173-22633293 ( 27) CGCGTTTT 1 chr2R:8316794-8316914 ( 79) CGCGTTTT 1 chrX:11547076-11547196 ( 63) CGCGTTTT 1 chr2L:5259357-5259477 ( 65) CGCGTTTT 1 chr3R:14214970-14215090 ( 60) CGCGTTTT 1 chr2R:24829781-24829901 ( 22) CGCGTTTT 1 chr2R:7588698-7588818 ( 19) CGCGTTTT 1 chr2L:19948115-19948235 ( 15) CGCGTTTT 1 chr2L:6276120-6276240 ( 59) CGCGTTTT 1 chr3L:19521232-19521352 ( 106) CGCGTTTT 1 chrX:15175623-15175743 ( 84) CGCGTTTT 1 chrX:11543469-11543589 ( 82) CGCGTTTT 1 chr2R:8578445-8578565 ( 89) CGCGTTTT 1 chr3R:19839341-19839461 ( 61) CGCGTTTT 1 chrX:4453077-4453197 ( 72) CGCGTTTT 1 chr2L:7140228-7140348 ( 45) CGCGTTTT 1 chr2R:14413866-14413986 ( 71) CGCGTTTT 1 chr3L:12022005-12022125 ( 65) CGCGTTTT 1 chrX:12012868-12012988 ( 63) CGCGTTTT 1 chrX:11246004-11246124 ( 36) CGCGTTTT 1 chrX:6541091-6541211 ( 20) CGCGTTTT 1 chrX:17018321-17018441 ( 43) CGCGTTTT 1 chr3R:6411944-6412064 ( 77) CGCGTTTT 1 chrX:3127703-3127823 ( 108) CGCGTTTT 1 chrX:8366468-8366588 ( 69) CGCGTTTT 1 chr2R:15825174-15825294 ( 34) CGCGTTTT 1 chr3L:16891225-16891345 ( 56) CGCGATTT 1 chr3L:12017348-12017468 ( 105) CGCGATTT 1 chr3R:16356961-16357081 ( 10) CGCGATTT 1 chr3L:1928377-1928497 ( 33) CGCGATTT 1 chr3L:13489492-13489612 ( 85) CGCGATTT 1 chr3L:19528686-19528806 ( 73) CGCGATTT 1 chrX:21126929-21127049 ( 63) CGCGATTT 1 chr3R:16334936-16335056 ( 103) CGCGATTT 1 chr2L:16367369-16367489 ( 35) CGCGATTT 1 chr2L:7368940-7369060 ( 61) CGCGATTT 1 chr3R:17125806-17125926 ( 104) CGCGATTT 1 chr3R:14425622-14425742 ( 87) CGCGATTT 1 chr2L:9396502-9396622 ( 40) CGCGATTT 1 chrX:13645043-13645163 ( 64) GGCGTTTT 1 chrX:15621167-15621287 ( 2) GGCGTTTT 1 chr2L:7074021-7074141 ( 9) GGCGTTTT 1 chr3L:19136441-19136561 ( 88) GGCGTTTT 1 chr3L:19525875-19525995 ( 100) GGCGTTTT 1 chr3L:19497274-19497394 ( 59) GGCGTTTT 1 chrX:2350031-2350151 ( 42) GGCGTTTT 1 chr3R:6973529-6973649 ( 94) GGCGATTT 1 chr3L:16981273-16981393 ( 58) GGCGATTT 1 chr3R:28704208-28704328 ( 81) CGCGGTTT 1 chr2L:5338393-5338513 ( 90) CGCGGTTT 1 chr3L:18994265-18994385 ( 50) GGCGATTT 1 chr2R:19628681-19628801 ( 112) CGCGGTTT 1 chr2R:11726615-11726735 ( 31) GGCGATTT 1 chr3R:7991585-7991705 ( 51) GGCGATTT 1 chr2R:24557579-24557699 ( 63) GGCGATTT 1 chr2L:5223456-5223576 ( 78) CGCGGTTT 1 chr3R:22632320-22632440 ( 87) CGCGGTTT 1 chrX:8939282-8939402 ( 94) TGCGTTTT 1 chr3R:9886180-9886300 ( 2) TGCGTTTT 1 chr3R:31246857-31246977 ( 65) TGCGTTTT 1 chr3L:8798710-8798830 ( 19) TGCGTTTT 1 chrX:20129529-20129649 ( 41) TGCGTTTT 1 chr2L:7542224-7542344 ( 51) CGCGTTTA 1 chr2R:7588499-7588619 ( 36) TGCGTTTT 1 chr2L:5227030-5227150 ( 18) TGCGTTTT 1 chr2R:11487130-11487250 ( 71) CGCGTTTA 1 chr2R:14006248-14006368 ( 71) CGCGTTTA 1 chrX:20133571-20133691 ( 105) CGCGTTTA 1 chr3L:13266217-13266337 ( 73) CGCGTTTA 1 chr3L:18992968-18993088 ( 85) CGCGTCTT 1 chr2R:17081246-17081366 ( 100) CGCGTCTT 1 chr2L:7071358-7071478 ( 81) AGCGTTTT 1 chr3L:16568960-16569080 ( 60) AGCGTTTT 1 chr3L:20984948-20985068 ( 112) AGCGTTTT 1 chr3L:7732488-7732608 ( 29) AGCGTTTT 1 chr3L:6574375-6574495 ( 60) TGCGATTT 1 chr3R:5705121-5705241 ( 36) TGCGATTT 1 chrX:12760586-12760706 ( 47) CGCGACTT 1 chrX:21127130-21127250 ( 77) CGCGACTT 1 chr3R:13999381-13999501 ( 11) CGCGACTT 1 chr3R:5777687-5777807 ( 30) CGCGACTT 1 chrX:12487624-12487744 ( 23) CGCGACTT 1 chrX:11526455-11526575 ( 68) CGCGACTT 1 chrX:14175802-14175922 ( 16) CGCGACTT 1 chr2L:13630281-13630401 ( 95) AGCGATTT 1 chr2R:13589340-13589460 ( 72) AGCGATTT 1 chr2R:11726816-11726936 ( 6) AGCGATTT 1 chr3R:19101420-19101540 ( 43) AGCGATTT 1 chr3R:15999080-15999200 ( 56) AGCGATTT 1 chr2L:7542738-7542858 ( 87) GGCGGTTT 1 chrX:334719-334839 ( 4) GGCGGTTT 1 chr3L:18993709-18993829 ( 63) GGCGGTTT 1 chr3R:30566320-30566440 ( 54) GGCGGTTT 1 chrX:15643339-15643459 ( 45) GGCGTTTA 1 chr2R:20611125-20611245 ( 21) GGCGTTTA 1 chr3R:16335577-16335697 ( 22) GGCGTTTA 1 chr2L:5229378-5229498 ( 49) GGCGTTTA 1 chr3L:4490841-4490961 ( 57) CGCGTTTC 1 chr2L:13630082-13630202 ( 76) CGCGTTTC 1 chr3R:16355170-16355290 ( 68) GGCGTCTT 1 chr3R:21434018-21434138 ( 28) GGCGATTA 1 chrX:15175420-15175540 ( 30) TGCGGTTT 1 chrX:15616362-15616482 ( 74) CGCGGTTA 1 chr3R:15024341-15024461 ( 39) CGCGGTTA 1 chrX:14098600-14098720 ( 81) CGCGATTC 1 chr3R:23472150-23472270 ( 70) CGCGATTC 1 chrX:4453288-4453408 ( 62) TGCGTTTA 1 chrX:8958400-8958520 ( 52) TGCGTTTA 1 chrX:15292616-15292736 ( 98) CGCCTTTT 1 chr3R:16335778-16335898 ( 57) CGCCTTTT 1 chr3L:2893939-2894059 ( 58) CGCCTTTT 1 chr3L:10365780-10365900 ( 4) TGCGATTA 1 chrX:11511438-11511558 ( 85) TGCGATTA 1 chrX:19020201-19020321 ( 14) CGCGACTA 1 chrX:18942119-18942239 ( 94) CGCGACTA 1 chr3L:16572319-16572439 ( 27) AGCGACTT 1 chrX:1094521-1094641 ( 37) GGCGATTC 1 chr2R:13592310-13592430 ( 98) GGCGGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.12804 E= 4.8e-085 -172 135 -19 -124 -1360 -1360 212 -1360 -1360 208 -1360 -1360 -1360 -329 208 -1360 35 -1360 -113 106 -1360 -107 -1360 174 -1360 -1360 -1360 191 -88 -255 -1360 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 4.8e-085 0.080645 0.604839 0.201613 0.112903 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.024194 0.975806 0.000000 0.338710 0.000000 0.104839 0.556452 0.000000 0.112903 0.000000 0.887097 0.000000 0.000000 0.000000 1.000000 0.145161 0.040323 0.000000 0.814516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGWTTT MEME-2 regular expression -------------------------------------------------------------------------------- [CG]GCG[TA]TTT -------------------------------------------------------------------------------- Time 14.39 secs. ******************************************************************************** ******************************************************************************** MOTIF MRAAWCGC MEME-3 width = 8 sites = 62 llr = 496 E-value = 1.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 36a83::: pos.-specific C 5:::1a:a probability G 24:2::a: matrix T ::::6::: bits 2.1 *** 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 ** *** Entropy 1.1 *** *** (11.5 bits) 0.8 *** *** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAATCGC consensus AG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16572319-16572439 93 1.55e-05 AAAACGCGCC CAAATCGC CTCCAAGTTG chr3R:8223337-8223457 60 1.55e-05 GAAACGCGCA CAAATCGC TTGGCAATTA chr3R:7991790-7991910 78 1.55e-05 TCGTTGGCCC CAAATCGC CAGTAATTAG chr3L:20984948-20985068 65 1.55e-05 AAATCGCCAG CAAATCGC TGGGGAAACG chr3R:9759371-9759491 1 2.89e-05 . CGAATCGC GTCCGAATCG chr3R:12712917-12713037 58 2.89e-05 AACTCGCGTT CGAATCGC AAGCAAGCTG chr3L:12017348-12017468 82 2.89e-05 CCAACATTAG CGAATCGC ATGCAAAAGT chr2R:13585945-13586065 40 2.89e-05 AAACCGCTTT CGAATCGC TAGAGAAACG chrX:19162654-19162774 56 2.89e-05 AAAACGCGCC CGAATCGC TGCCAAGTCG chr3R:19152259-19152379 44 2.89e-05 AAACCGCTCA CGAATCGC GTCAAAATCG chr2L:13630082-13630202 23 2.89e-05 AAAACGCCAA CGAATCGC GTGCAAAACG chr3L:12023276-12023396 48 2.89e-05 GAATCGCTCG CGAATCGC TGGTCGCGAT chr3R:25762144-25762264 53 2.89e-05 AAATCGCTGG CGAATCGC TCGCAAATCG chr3R:12387104-12387224 95 2.89e-05 AAAACGCGTC CGAATCGC TTTGAAATCG chr3R:5705121-5705241 49 2.89e-05 GATTTGTGTG CGAATCGC GTGTAATTTG chr3R:23472150-23472270 25 4.44e-05 AAATCGCACG CAAAACGC CCTGGAAACG chr2R:18819121-18819241 36 4.44e-05 AAATCGCACT CAAAACGC GCCAAACGTG chr3R:30830577-30830697 27 4.44e-05 AAACCAGCGG CAAAACGC TGACAAAACG chr2R:7087820-7087940 58 4.44e-05 AAGTCGCGCG CAAAACGC ACGAAAAGCG chr3R:11831326-11831446 30 4.44e-05 AAGTCGCGCG CAAAACGC GGCCGAAACG chr2L:8215669-8215789 15 4.44e-05 AAGGCGCGTT CAAAACGC GTCCGAAACG chr2L:7702817-7702937 50 6.19e-05 AGAAAAGGTG AAAATCGC GTACAACCGA chrX:15616157-15616277 48 6.19e-05 GAAACGCGCC AAAATCGC GCTGAAAACG chr2L:7140228-7140348 20 6.19e-05 GAGCGCTGCT AAAATCGC GTGTGCCTTA chr2L:9396502-9396622 71 6.19e-05 ATATCGCTGG AAAATCGC AAGTACCCAT chr2L:5617363-5617483 53 6.19e-05 AAATGTCGCC AAAATCGC GGCTAAATTG chr3R:17231845-17231965 79 9.03e-05 AATTTTACGA GAAATCGC TGTGGCGCTT chr3L:16981273-16981393 76 9.03e-05 TAAACGCCAG CGAAACGC GCGCGAAACG chrX:14749249-14749369 64 9.03e-05 GAATCGCTTC GAAATCGC TCGCTTGCGC chr3L:10365780-10365900 33 9.03e-05 AAAACGCGCG CGAAACGC ATACTACACT chr3R:7991585-7991705 42 9.03e-05 GCACGCGATT GAAATCGC AGGCGATTTC chrX:16932628-16932748 64 9.03e-05 AAAACGCGCG CGAAACGC GAGCAAAACG chrX:18942119-18942239 72 9.03e-05 GAAACGCCAG CGAAACGC GTGCAAAACG chr2L:5229378-5229498 67 9.03e-05 AAAACGCGCC GAAATCGC CAGCGACTCG chrX:12760586-12760706 6 1.05e-04 ATCAA AGAATCGC TCCAAAGCAA chr2L:5233288-5233408 76 1.37e-04 AAAACGCTAG AAAAACGC ACTCGAAATG chr3R:14425622-14425742 56 1.37e-04 TGGCGCGGTA AAAAACGC AGCTAAATCG chr2R:13583578-13583698 106 1.37e-04 AAAACGATAC AAAAACGC GCTGGGC chrX:8958400-8958520 70 1.37e-04 AAAACGCGCA CAAACCGC ACTGAAACCG chrX:19175311-19175431 89 1.37e-04 GAAACGCTGA CAAACCGC TCGAAATGGT chr3R:15316494-15316614 86 1.63e-04 CCACGCGACT GGAATCGC CAAGTGCTTA chr3L:12022005-12022125 83 1.63e-04 TTGTCGCCCG CAAGTCGC ACCGCGAGTT chrX:6541091-6541211 38 1.63e-04 TAACCGCGCG CAAGTCGC TGGCAACTTT chr3R:13450430-13450550 1 1.78e-04 . GAAAACGC ATCGACGAGT chr3L:4490841-4490961 26 1.78e-04 AGGCGGTAAA GAAAACGC TACTAAATCG chrX:7475343-7475463 13 1.78e-04 CAAACGCTTG GAAAACGC GAGAAAACCG chr3R:24956327-24956447 84 2.05e-04 TTGTCGCATT AGAAACGC CAGCAAAACG chr2L:5259357-5259477 56 2.17e-04 AACGCGAACG CGAGTCGC GCGCGTTTTT chr3L:7732488-7732608 20 2.17e-04 GGCCGAGTGG CGAGTCGC GAGCGTTTTT chr2L:16367369-16367489 71 2.59e-04 CGTCAGACGA AAAACCGC CCGTTGCGTT chr2L:6705154-6705274 67 2.59e-04 GGCAGCGGTT AAAACCGC GCTTCTGCGC chrX:13221571-13221691 87 2.74e-04 TTGCGCAGTG AAAGTCGC GCAGCTGGAA chr2R:11726615-11726735 9 2.74e-04 GTCGCCAC AAAGTCGC GTGCAAAACG chrX:1094521-1094641 55 2.74e-04 ACGCGCTGTA AAAGTCGC CAGCAAAACG chr3L:18992968-18993088 103 3.25e-04 TAGTCGCTCC AGAACCGC TCGTGACTTT chr3R:15024341-15024461 57 3.25e-04 AAGTCGCGTC GAAGTCGC GTGGCGGTCG chr3L:7781887-7782007 49 3.76e-04 TTTATGTTAA AAAGACGC GCGCAGCTGC chr3L:18993709-18993829 35 3.76e-04 GAATCGCGCG CAAGCCGC ACGGAAGCGG chr3L:2893939-2894059 20 3.76e-04 GAAACGTATC GGAACCGC CTCGAAAACG chrX:11246004-11246124 25 3.76e-04 AAACAGCCGC GGAACCGC AGGCGCGTTT chrX:11511438-11511558 30 3.76e-04 CCCAGCGGCA AAAGACGC TGGCAAAACG chr3R:9886180-9886300 33 4.66e-04 TTGTGCTGTT TAAATCGC TTGGAATTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16572319-16572439 1.6e-05 92_[+3]_20 chr3R:8223337-8223457 1.6e-05 59_[+3]_53 chr3R:7991790-7991910 1.6e-05 77_[+3]_35 chr3L:20984948-20985068 1.6e-05 64_[+3]_48 chr3R:9759371-9759491 2.9e-05 [+3]_112 chr3R:12712917-12713037 2.9e-05 57_[+3]_55 chr3L:12017348-12017468 2.9e-05 81_[+3]_31 chr2R:13585945-13586065 2.9e-05 39_[+3]_73 chrX:19162654-19162774 2.9e-05 55_[+3]_57 chr3R:19152259-19152379 2.9e-05 43_[+3]_69 chr2L:13630082-13630202 2.9e-05 22_[+3]_90 chr3L:12023276-12023396 2.9e-05 47_[+3]_65 chr3R:25762144-25762264 2.9e-05 52_[+3]_60 chr3R:12387104-12387224 2.9e-05 94_[+3]_18 chr3R:5705121-5705241 2.9e-05 48_[+3]_64 chr3R:23472150-23472270 4.4e-05 24_[+3]_88 chr2R:18819121-18819241 4.4e-05 35_[+3]_77 chr3R:30830577-30830697 4.4e-05 26_[+3]_86 chr2R:7087820-7087940 4.4e-05 57_[+3]_55 chr3R:11831326-11831446 4.4e-05 29_[+3]_83 chr2L:8215669-8215789 4.4e-05 14_[+3]_98 chr2L:7702817-7702937 6.2e-05 49_[+3]_63 chrX:15616157-15616277 6.2e-05 47_[+3]_65 chr2L:7140228-7140348 6.2e-05 19_[+3]_93 chr2L:9396502-9396622 6.2e-05 70_[+3]_42 chr2L:5617363-5617483 6.2e-05 52_[+3]_60 chr3R:17231845-17231965 9e-05 78_[+3]_34 chr3L:16981273-16981393 9e-05 75_[+3]_37 chrX:14749249-14749369 9e-05 63_[+3]_49 chr3L:10365780-10365900 9e-05 32_[+3]_80 chr3R:7991585-7991705 9e-05 41_[+3]_71 chrX:16932628-16932748 9e-05 63_[+3]_49 chrX:18942119-18942239 9e-05 71_[+3]_41 chr2L:5229378-5229498 9e-05 66_[+3]_46 chrX:12760586-12760706 0.00011 5_[+3]_107 chr2L:5233288-5233408 0.00014 75_[+3]_37 chr3R:14425622-14425742 0.00014 55_[+3]_57 chr2R:13583578-13583698 0.00014 105_[+3]_7 chrX:8958400-8958520 0.00014 69_[+3]_43 chrX:19175311-19175431 0.00014 88_[+3]_24 chr3R:15316494-15316614 0.00016 85_[+3]_27 chr3L:12022005-12022125 0.00016 82_[+3]_30 chrX:6541091-6541211 0.00016 37_[+3]_75 chr3R:13450430-13450550 0.00018 [+3]_112 chr3L:4490841-4490961 0.00018 25_[+3]_87 chrX:7475343-7475463 0.00018 12_[+3]_100 chr3R:24956327-24956447 0.00021 83_[+3]_29 chr2L:5259357-5259477 0.00022 55_[+3]_57 chr3L:7732488-7732608 0.00022 19_[+3]_93 chr2L:16367369-16367489 0.00026 70_[+3]_42 chr2L:6705154-6705274 0.00026 66_[+3]_46 chrX:13221571-13221691 0.00027 86_[+3]_26 chr2R:11726615-11726735 0.00027 8_[+3]_104 chrX:1094521-1094641 0.00027 54_[+3]_58 chr3L:18992968-18993088 0.00032 102_[+3]_10 chr3R:15024341-15024461 0.00032 56_[+3]_56 chr3L:7781887-7782007 0.00038 48_[+3]_64 chr3L:18993709-18993829 0.00038 34_[+3]_78 chr3L:2893939-2894059 0.00038 19_[+3]_93 chrX:11246004-11246124 0.00038 24_[+3]_88 chrX:11511438-11511558 0.00038 29_[+3]_83 chr3R:9886180-9886300 0.00047 32_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MRAAWCGC width=8 seqs=62 chr3L:16572319-16572439 ( 93) CAAATCGC 1 chr3R:8223337-8223457 ( 60) CAAATCGC 1 chr3R:7991790-7991910 ( 78) CAAATCGC 1 chr3L:20984948-20985068 ( 65) CAAATCGC 1 chr3R:9759371-9759491 ( 1) CGAATCGC 1 chr3R:12712917-12713037 ( 58) CGAATCGC 1 chr3L:12017348-12017468 ( 82) CGAATCGC 1 chr2R:13585945-13586065 ( 40) CGAATCGC 1 chrX:19162654-19162774 ( 56) CGAATCGC 1 chr3R:19152259-19152379 ( 44) CGAATCGC 1 chr2L:13630082-13630202 ( 23) CGAATCGC 1 chr3L:12023276-12023396 ( 48) CGAATCGC 1 chr3R:25762144-25762264 ( 53) CGAATCGC 1 chr3R:12387104-12387224 ( 95) CGAATCGC 1 chr3R:5705121-5705241 ( 49) CGAATCGC 1 chr3R:23472150-23472270 ( 25) CAAAACGC 1 chr2R:18819121-18819241 ( 36) CAAAACGC 1 chr3R:30830577-30830697 ( 27) CAAAACGC 1 chr2R:7087820-7087940 ( 58) CAAAACGC 1 chr3R:11831326-11831446 ( 30) CAAAACGC 1 chr2L:8215669-8215789 ( 15) CAAAACGC 1 chr2L:7702817-7702937 ( 50) AAAATCGC 1 chrX:15616157-15616277 ( 48) AAAATCGC 1 chr2L:7140228-7140348 ( 20) AAAATCGC 1 chr2L:9396502-9396622 ( 71) AAAATCGC 1 chr2L:5617363-5617483 ( 53) AAAATCGC 1 chr3R:17231845-17231965 ( 79) GAAATCGC 1 chr3L:16981273-16981393 ( 76) CGAAACGC 1 chrX:14749249-14749369 ( 64) GAAATCGC 1 chr3L:10365780-10365900 ( 33) CGAAACGC 1 chr3R:7991585-7991705 ( 42) GAAATCGC 1 chrX:16932628-16932748 ( 64) CGAAACGC 1 chrX:18942119-18942239 ( 72) CGAAACGC 1 chr2L:5229378-5229498 ( 67) GAAATCGC 1 chrX:12760586-12760706 ( 6) AGAATCGC 1 chr2L:5233288-5233408 ( 76) AAAAACGC 1 chr3R:14425622-14425742 ( 56) AAAAACGC 1 chr2R:13583578-13583698 ( 106) AAAAACGC 1 chrX:8958400-8958520 ( 70) CAAACCGC 1 chrX:19175311-19175431 ( 89) CAAACCGC 1 chr3R:15316494-15316614 ( 86) GGAATCGC 1 chr3L:12022005-12022125 ( 83) CAAGTCGC 1 chrX:6541091-6541211 ( 38) CAAGTCGC 1 chr3R:13450430-13450550 ( 1) GAAAACGC 1 chr3L:4490841-4490961 ( 26) GAAAACGC 1 chrX:7475343-7475463 ( 13) GAAAACGC 1 chr3R:24956327-24956447 ( 84) AGAAACGC 1 chr2L:5259357-5259477 ( 56) CGAGTCGC 1 chr3L:7732488-7732608 ( 20) CGAGTCGC 1 chr2L:16367369-16367489 ( 71) AAAACCGC 1 chr2L:6705154-6705274 ( 67) AAAACCGC 1 chrX:13221571-13221691 ( 87) AAAGTCGC 1 chr2R:11726615-11726735 ( 9) AAAGTCGC 1 chrX:1094521-1094641 ( 55) AAAGTCGC 1 chr3L:18992968-18993088 ( 103) AGAACCGC 1 chr3R:15024341-15024461 ( 57) GAAGTCGC 1 chr3L:7781887-7782007 ( 49) AAAGACGC 1 chr3L:18993709-18993829 ( 35) CAAGCCGC 1 chr3L:2893939-2894059 ( 20) GGAACCGC 1 chrX:11246004-11246124 ( 25) GGAACCGC 1 chrX:11511438-11511558 ( 30) AAAGACGC 1 chr3R:9886180-9886300 ( 33) TAAATCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1293 E= 1.1e-009 12 112 -37 -404 124 -1260 69 -1260 191 -1260 -1260 -1260 163 -1260 -37 -1260 20 -88 -1260 108 -1260 208 -1260 -1260 -1260 -1260 212 -1260 -1260 208 -1260 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.1e-009 0.290323 0.516129 0.177419 0.016129 0.629032 0.000000 0.370968 0.000000 1.000000 0.000000 0.000000 0.000000 0.822581 0.000000 0.177419 0.000000 0.306452 0.129032 0.000000 0.564516 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRAAWCGC MEME-3 regular expression -------------------------------------------------------------------------------- [CA][AG]AA[TA]CGC -------------------------------------------------------------------------------- Time 20.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGWTT MEME-4 width = 8 sites = 44 llr = 373 E-value = 4.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 31:::4:: pos.-specific C 16:a:::: probability G 6:a:a::: matrix T 12:::6aa bits 2.1 *** 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 ****** (12.2 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGTTT consensus AT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19939233-19939353 96 1.29e-05 CGCGTTTTTC GCGCGTTT CCTTGCATCG chr3R:8118155-8118275 59 1.29e-05 CATGTGGCAG GCGCGTTT ACGGCGCGTT chr2L:6276120-6276240 47 1.29e-05 GCGTCATTAA GCGCGTTT CTGGCGCGTT chrX:15175623-15175743 63 1.29e-05 CGCGTTTCCT GCGCGTTT TTGCGTGTTT chr3L:12022005-12022125 106 1.29e-05 GAGTTCAATG GCGCGTTT GTTGCTT chr2R:24557579-24557699 73 1.29e-05 GGCGATTTGC GCGCGTTT CTGGCGCGAC chrX:12012868-12012988 92 1.29e-05 TACGCGTTCG GCGCGTTT TTCGTGCGGT chrX:3127703-3127823 74 1.29e-05 CTGTCCTTCG GCGCGTTT CGTTGgcgtt chr3R:22632320-22632440 56 1.29e-05 AGCGATTTGC GCGCGTTT CGTAGGCGGC chr3L:16891225-16891345 66 2.58e-05 CGCGATTTGC GCGCGATT CGCATGCGTT chrX:8995155-8995275 79 2.58e-05 CGCGAGTTGA GCGCGATT TTCAAACATT chr3L:13489492-13489612 62 2.58e-05 CGCCGTCGCC GCGCGATT CGTTGGCGAT chr2R:24829781-24829901 43 2.58e-05 GGCGATTGCA GCGCGATT AAAACCGTTT chr2L:7071358-7071478 58 2.58e-05 TGCGTTTCGC GCGCGATT CTCATGCGAT chr2R:14413866-14413986 59 2.58e-05 AGCGATTCAC GCGCGATT TGGCCGCGTT chrX:13946816-13946936 16 4.07e-05 TTGTGCGCCC ACGCGTTT TGTTCGCGTT chr3L:7732488-7732608 39 4.07e-05 AGCGTTTTTC ACGCGTTT ATAATCGCGT chr2L:5223456-5223576 66 4.07e-05 CGCTGTCGCC ACGCGTTT CCCTCGCGGT chrX:13645043-13645163 8 5.51e-05 GTTTCGA GTGCGTTT TACGAGCGTT chrX:14098600-14098720 23 5.51e-05 TCGGCGATCT GTGCGTTT CAAAATCGCA chrX:8939282-8939402 82 5.51e-05 TGCGGTTTGA GTGCGTTT CGCGTGCGTT chr3L:18994265-18994385 27 5.51e-05 GCGTCAGAAG GTGCGTTT TGCGAGCGAT chrX:11520981-11521101 17 5.51e-05 CGGGAtgtgt gtgcgttt gtgtgtgtgt chr2L:7368940-7369060 71 7.01e-05 CGCGATTTCG ACGCGATT CAACAGCGAT chrX:11543469-11543589 70 7.01e-05 CGCGACGCCC ACGCGATT TGTGCGCGTT chr3R:7991585-7991705 34 7.01e-05 CGCGACTTGC ACGCGATT GAAATCGCAG chrX:17018321-17018441 27 7.01e-05 GAACGACGCA ACGCGATT TCCGCTCGCG chr2R:13589340-13589460 60 9.91e-05 AGCGGTTTAC GAGCGTTT CGCTAGCGAT chr3L:6574375-6574495 70 9.91e-05 TGCGATTTGC GTGCGATT AGAGAGCGAT chrX:11246004-11246124 46 9.91e-05 CGCGTTTTAC GAGCGTTT TTTCCCGCCT chrX:2350031-2350151 57 9.91e-05 TTTTTGTCGC GTGCGATT CATTTGCACA chr3R:28704208-28704328 102 1.29e-04 CGACCAGAGC CCGCGTTT CCCACGCGGT chrX:11547076-11547196 51 1.29e-04 CGTGCACGCG CCGCGTTT TGTGCGCGTT chr3L:10365780-10365900 53 1.29e-04 ACTACACTCC ATGCGTTT GTAGAAAAAA chrX:8366468-8366588 79 1.29e-04 CGCGTTTTGC CCGCGTTT CGGGCGCTGT chrX:13221571-13221691 71 1.44e-04 CGCCCGTCTG TCGCGTTT GCGCAGTGAA chr2L:7140228-7140348 55 1.44e-04 CGCGTTTTCC TCGCGTTT CCCGAACGTT chrX:21126929-21127049 94 1.71e-04 GGAACATAAA GGGCGTTT GTGAAGGGGG chrX:19171006-19171126 98 2.18e-04 AAGTTTATTT AAGCGTTT GTTGTTAGCC chr3L:19526083-19526203 112 2.18e-04 AAGGGATTCA ATGCGATT G chr3L:1928377-1928497 14 2.18e-04 CCGAAAACCG AAGCGTTT ATTGCGACCA chr3R:16356961-16357081 94 2.33e-04 CGACTCGCGA TCGCGATT TTTCACATCT chr3L:16569160-16569280 22 2.45e-04 GGGAGGAGGT GGGCGATT GCCAGGTCGG chr3R:31246857-31246977 90 2.62e-04 CTAAACATCC AAGCGATT GTAAAACGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19939233-19939353 1.3e-05 95_[+4]_17 chr3R:8118155-8118275 1.3e-05 58_[+4]_54 chr2L:6276120-6276240 1.3e-05 46_[+4]_66 chrX:15175623-15175743 1.3e-05 62_[+4]_50 chr3L:12022005-12022125 1.3e-05 105_[+4]_7 chr2R:24557579-24557699 1.3e-05 72_[+4]_40 chrX:12012868-12012988 1.3e-05 91_[+4]_21 chrX:3127703-3127823 1.3e-05 73_[+4]_39 chr3R:22632320-22632440 1.3e-05 55_[+4]_57 chr3L:16891225-16891345 2.6e-05 65_[+4]_47 chrX:8995155-8995275 2.6e-05 78_[+4]_34 chr3L:13489492-13489612 2.6e-05 61_[+4]_51 chr2R:24829781-24829901 2.6e-05 42_[+4]_70 chr2L:7071358-7071478 2.6e-05 57_[+4]_55 chr2R:14413866-14413986 2.6e-05 58_[+4]_54 chrX:13946816-13946936 4.1e-05 15_[+4]_97 chr3L:7732488-7732608 4.1e-05 38_[+4]_74 chr2L:5223456-5223576 4.1e-05 65_[+4]_47 chrX:13645043-13645163 5.5e-05 7_[+4]_105 chrX:14098600-14098720 5.5e-05 22_[+4]_90 chrX:8939282-8939402 5.5e-05 81_[+4]_31 chr3L:18994265-18994385 5.5e-05 26_[+4]_86 chrX:11520981-11521101 5.5e-05 16_[+4]_96 chr2L:7368940-7369060 7e-05 70_[+4]_42 chrX:11543469-11543589 7e-05 69_[+4]_43 chr3R:7991585-7991705 7e-05 33_[+4]_79 chrX:17018321-17018441 7e-05 26_[+4]_86 chr2R:13589340-13589460 9.9e-05 59_[+4]_53 chr3L:6574375-6574495 9.9e-05 69_[+4]_43 chrX:11246004-11246124 9.9e-05 45_[+4]_67 chrX:2350031-2350151 9.9e-05 56_[+4]_56 chr3R:28704208-28704328 0.00013 101_[+4]_11 chrX:11547076-11547196 0.00013 50_[+4]_62 chr3L:10365780-10365900 0.00013 52_[+4]_60 chrX:8366468-8366588 0.00013 78_[+4]_34 chrX:13221571-13221691 0.00014 70_[+4]_42 chr2L:7140228-7140348 0.00014 54_[+4]_58 chrX:21126929-21127049 0.00017 93_[+4]_19 chrX:19171006-19171126 0.00022 97_[+4]_15 chr3L:19526083-19526203 0.00022 111_[+4]_1 chr3L:1928377-1928497 0.00022 13_[+4]_99 chr3R:16356961-16357081 0.00023 93_[+4]_19 chr3L:16569160-16569280 0.00025 21_[+4]_91 chr3R:31246857-31246977 0.00026 89_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGWTT width=8 seqs=44 chr3L:19939233-19939353 ( 96) GCGCGTTT 1 chr3R:8118155-8118275 ( 59) GCGCGTTT 1 chr2L:6276120-6276240 ( 47) GCGCGTTT 1 chrX:15175623-15175743 ( 63) GCGCGTTT 1 chr3L:12022005-12022125 ( 106) GCGCGTTT 1 chr2R:24557579-24557699 ( 73) GCGCGTTT 1 chrX:12012868-12012988 ( 92) GCGCGTTT 1 chrX:3127703-3127823 ( 74) GCGCGTTT 1 chr3R:22632320-22632440 ( 56) GCGCGTTT 1 chr3L:16891225-16891345 ( 66) GCGCGATT 1 chrX:8995155-8995275 ( 79) GCGCGATT 1 chr3L:13489492-13489612 ( 62) GCGCGATT 1 chr2R:24829781-24829901 ( 43) GCGCGATT 1 chr2L:7071358-7071478 ( 58) GCGCGATT 1 chr2R:14413866-14413986 ( 59) GCGCGATT 1 chrX:13946816-13946936 ( 16) ACGCGTTT 1 chr3L:7732488-7732608 ( 39) ACGCGTTT 1 chr2L:5223456-5223576 ( 66) ACGCGTTT 1 chrX:13645043-13645163 ( 8) GTGCGTTT 1 chrX:14098600-14098720 ( 23) GTGCGTTT 1 chrX:8939282-8939402 ( 82) GTGCGTTT 1 chr3L:18994265-18994385 ( 27) GTGCGTTT 1 chrX:11520981-11521101 ( 17) GTGCGTTT 1 chr2L:7368940-7369060 ( 71) ACGCGATT 1 chrX:11543469-11543589 ( 70) ACGCGATT 1 chr3R:7991585-7991705 ( 34) ACGCGATT 1 chrX:17018321-17018441 ( 27) ACGCGATT 1 chr2R:13589340-13589460 ( 60) GAGCGTTT 1 chr3L:6574375-6574495 ( 70) GTGCGATT 1 chrX:11246004-11246124 ( 46) GAGCGTTT 1 chrX:2350031-2350151 ( 57) GTGCGATT 1 chr3R:28704208-28704328 ( 102) CCGCGTTT 1 chrX:11547076-11547196 ( 51) CCGCGTTT 1 chr3L:10365780-10365900 ( 53) ATGCGTTT 1 chrX:8366468-8366588 ( 79) CCGCGTTT 1 chrX:13221571-13221691 ( 71) TCGCGTTT 1 chr2L:7140228-7140348 ( 55) TCGCGTTT 1 chrX:21126929-21127049 ( 94) GGGCGTTT 1 chrX:19171006-19171126 ( 98) AAGCGTTT 1 chr3L:19526083-19526203 ( 112) ATGCGATT 1 chr3L:1928377-1928497 ( 14) AAGCGTTT 1 chr3R:16356961-16357081 ( 94) TCGCGATT 1 chr3L:16569160-16569280 ( 22) GGGCGATT 1 chr3R:31246857-31246977 ( 90) AAGCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 4.9e-005 3 -180 136 -197 -123 143 -234 -38 -1210 -1210 212 -1210 -1210 208 -1210 -1210 -1210 -1210 212 -1210 45 -1210 -1210 126 -1210 -1210 -1210 191 -1210 -1210 -1210 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.9e-005 0.272727 0.068182 0.590909 0.068182 0.113636 0.636364 0.045455 0.204545 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.000000 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGWTT MEME-4 regular expression -------------------------------------------------------------------------------- [GA][CT]GCG[TA]TT -------------------------------------------------------------------------------- Time 25.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCMTGCG MEME-5 width = 8 sites = 15 llr = 152 E-value = 4.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::7:::: pos.-specific C 7:a3::a: probability G :a:::a:a matrix T 3:::a::: bits 2.1 ** *** 1.9 ** **** 1.7 ** **** 1.5 ** **** Relative 1.3 *** **** Entropy 1.1 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCATGCG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16891225-16891345 74 1.15e-05 GCGCGCGATT CGCATGCG TTTTCCCAGT chrX:19162654-19162774 83 1.15e-05 GCGCGCAACA CGCATGCG CAGCTGCACT chr3R:22633173-22633293 17 1.15e-05 TGAAAGAGAG CGCATGCG CGCGCGTTTT chr3L:4489611-4489731 80 1.15e-05 CAAGAACACG CGCATGCG TGAAGAGCAA chr3R:5777687-5777807 53 1.15e-05 CGGAGACGAT CGCATGCG ATGAAAACGC chrX:16932628-16932748 38 1.15e-05 GGGCGCGCCA CGCATGCG CAATGCGAAA chr2L:6705154-6705274 38 1.15e-05 GCGGCTACTG CGCATGCG CGACGCGAGT chr3R:6970697-6970817 35 2.17e-05 GAAAAATTAT CGCCTGCG CTCAGTGGCG chr2L:5338393-5338513 43 2.17e-05 GCGCGGCTAT CGCCTGCG ATTTCGATGC chr2R:24829981-24830101 71 2.17e-05 TTGGATTTGG CGCCTGCG AATGCCGATC chrX:18942119-18942239 55 2.17e-05 GAAATGTAAT CGCCTGCG AAACGCCAGC chr2R:13592310-13592430 37 3.46e-05 TTAAAAAAGC TGCATGCG GCTCAAAGCT chr2L:7071573-7071693 87 3.46e-05 AAGCGATCTT TGCATGCG GAATTAACTT chr3R:30566320-30566440 104 3.46e-05 CAAAGATGGT TGCATGCG ATGGTTGCC chr3L:16571153-16571273 101 4.61e-05 TAGATTAATC TGCCTGCG ACGGATAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16891225-16891345 1.2e-05 73_[+5]_39 chrX:19162654-19162774 1.2e-05 82_[+5]_30 chr3R:22633173-22633293 1.2e-05 16_[+5]_96 chr3L:4489611-4489731 1.2e-05 79_[+5]_33 chr3R:5777687-5777807 1.2e-05 52_[+5]_60 chrX:16932628-16932748 1.2e-05 37_[+5]_75 chr2L:6705154-6705274 1.2e-05 37_[+5]_75 chr3R:6970697-6970817 2.2e-05 34_[+5]_78 chr2L:5338393-5338513 2.2e-05 42_[+5]_70 chr2R:24829981-24830101 2.2e-05 70_[+5]_42 chrX:18942119-18942239 2.2e-05 54_[+5]_58 chr2R:13592310-13592430 3.5e-05 36_[+5]_76 chr2L:7071573-7071693 3.5e-05 86_[+5]_26 chr3R:30566320-30566440 3.5e-05 103_[+5]_9 chr3L:16571153-16571273 4.6e-05 100_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCMTGCG width=8 seqs=15 chr3L:16891225-16891345 ( 74) CGCATGCG 1 chrX:19162654-19162774 ( 83) CGCATGCG 1 chr3R:22633173-22633293 ( 17) CGCATGCG 1 chr3L:4489611-4489731 ( 80) CGCATGCG 1 chr3R:5777687-5777807 ( 53) CGCATGCG 1 chrX:16932628-16932748 ( 38) CGCATGCG 1 chr2L:6705154-6705274 ( 38) CGCATGCG 1 chr3R:6970697-6970817 ( 35) CGCCTGCG 1 chr2L:5338393-5338513 ( 43) CGCCTGCG 1 chr2R:24829981-24830101 ( 71) CGCCTGCG 1 chrX:18942119-18942239 ( 55) CGCCTGCG 1 chr2R:13592310-13592430 ( 37) TGCATGCG 1 chr2L:7071573-7071693 ( 87) TGCATGCG 1 chr3R:30566320-30566440 ( 104) TGCATGCG 1 chr3L:16571153-16571273 ( 101) TGCCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 4.6e+001 -1055 163 -1055 0 -1055 -1055 212 -1055 -1055 208 -1055 -1055 132 49 -1055 -1055 -1055 -1055 -1055 191 -1055 -1055 212 -1055 -1055 208 -1055 -1055 -1055 -1055 212 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.6e+001 0.000000 0.733333 0.000000 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCMTGCG MEME-5 regular expression -------------------------------------------------------------------------------- [CT]GC[AC]TGCG -------------------------------------------------------------------------------- Time 31.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2350031-2350151 2.49e-05 41_[+2(4.42e-05)]_4_[+5(6.75e-05)]_\ 59 chrX:19175311-19175431 2.15e-03 66_[+3(6.19e-05)]_46 chr3R:15024341-15024461 1.37e-04 120 chr2L:5229378-5229498 5.84e-06 56_[+1(1.51e-05)]_3_[+1(7.87e-05)]_\ 45 chr3R:5705121-5705241 1.07e-06 10_[+3(6.19e-05)]_13_[+5(6.75e-05)]_\ 9_[+3(2.89e-05)]_64 chr3R:22632320-22632440 2.53e-05 55_[+4(1.29e-05)]_23_[+2(7.16e-05)]_\ 26 chr2L:8215669-8215789 1.30e-04 15_[+1(1.51e-05)]_2_[+3(9.03e-05)]_\ 4_[+1(1.51e-05)]_75 chr2L:5223456-5223576 8.24e-03 65_[+4(4.07e-05)]_4_[+2(7.16e-05)]_\ 35 chr2R:15825174-15825294 1.61e-07 32_[+4(1.29e-05)]_25_[+1(1.51e-05)]_\ 47 chr3L:7732488-7732608 3.50e-05 27_[+4(9.91e-05)]_3_[+4(4.07e-05)]_\ 74 chr3R:11831326-11831446 3.89e-03 30_[+1(1.51e-05)]_2_[+3(9.03e-05)]_\ 4_[+1(1.51e-05)]_60 chrX:18942119-18942239 1.40e-06 54_[+5(2.17e-05)]_9_[+3(9.03e-05)]_\ 4_[+1(1.51e-05)]_29 chrX:14175802-14175922 4.59e-02 120 chr2R:17081246-17081366 3.17e-05 89_[+1(1.51e-05)]_23 chr3L:20984948-20985068 8.66e-06 53_[+3(1.55e-05)]_3_[+3(1.55e-05)]_\ 48 chr3R:12387104-12387224 1.38e-03 84_[+1(1.51e-05)]_2_[+3(2.89e-05)]_\ 4_[+1(3.01e-05)]_6 chrX:1094521-1094641 6.57e-05 66_[+1(1.51e-05)]_46 chrX:11511438-11511558 1.37e-05 41_[+1(1.51e-05)]_71 chrX:8366468-8366588 1.41e-05 67_[+4(1.29e-05)]_45 chr3L:13266217-13266337 4.93e-06 30_[+1(9.17e-05)]_33_[+4(4.07e-05)]_\ 12_[+1(9.17e-05)]_21 chr2R:14923778-14923898 8.01e-01 120 chr2L:5617363-5617483 5.99e-05 53_[+1(3.01e-05)]_23_[+1(1.51e-05)]_\ 28 chrX:3127703-3127823 2.98e-04 73_[+4(1.29e-05)]_4_[+2(4.42e-05)]_\ 2_[+4(1.29e-05)]_3_[+4(1.29e-05)]_6 chr2L:9393423-9393543 1.50e-01 120 chr3R:25762144-25762264 4.84e-04 41_[+3(9.03e-05)]_3_[+3(2.89e-05)]_\ 3_[+3(1.55e-05)]_49 chr3R:6411944-6412064 2.40e-04 75_[+4(1.29e-05)]_37 chrX:19020201-19020321 1.05e-05 21_[+1(6.32e-05)]_2_[+3(1.55e-05)]_\ 81 chrX:8958400-8958520 2.61e-05 59_[+1(1.51e-05)]_53 chr2R:13583578-13583698 1.03e-03 84_[+1(1.51e-05)]_14_[+1(1.51e-05)]_\ 6 chrX:17018321-17018441 5.94e-06 27_[+2(2.98e-05)]_6_[+4(1.29e-05)]_\ 34_[+2(4.42e-05)]_29 chrX:6541091-6541211 1.09e-05 19_[+2(1.49e-05)]_93 chrX:11246004-11246124 2.99e-06 34_[+4(1.29e-05)]_3_[+4(9.91e-05)]_\ 67 chr3R:24956327-24956447 3.35e-04 95_[+1(1.51e-05)]_17 chrX:12012868-12012988 1.90e-07 10_[+1(3.01e-05)]_44_[+2(1.49e-05)]_\ 21_[+4(1.29e-05)]_21 chr2R:24557579-24557699 8.67e-07 62_[+2(7.16e-05)]_2_[+4(1.29e-05)]_\ 12_[+1(4.57e-05)]_20 chr3R:15999080-15999200 7.08e-05 21_[+1(4.57e-05)]_91 chr3L:12022005-12022125 1.38e-05 63_[+4(1.29e-05)]_34_[+4(1.29e-05)]_\ 7 chr2L:6705154-6705274 1.88e-05 16_[+1(6.32e-05)]_13_[+5(1.15e-05)]_\ 75 chr2L:9396502-9396622 8.49e-06 38_[+4(2.58e-05)]_2_[+3(9.03e-05)]_\ 14_[+3(6.19e-05)]_42 chr2R:14413866-14413986 1.08e-03 58_[+4(2.58e-05)]_4_[+2(1.49e-05)]_\ 42 chr2L:7140228-7140348 8.20e-08 2_[+1(1.51e-05)]_10_[+1(3.01e-05)]_\ 15_[+4(1.29e-05)]_69 chrX:16932628-16932748 8.69e-06 37_[+5(1.15e-05)]_8_[+1(1.51e-05)]_\ 2_[+3(9.03e-05)]_4_[+1(1.51e-05)]_37 chr3R:7991585-7991705 2.89e-07 33_[+4(7.01e-05)]_[+3(9.03e-05)]_1_\ [+2(7.16e-05)]_18_[+1(1.51e-05)]_36 chrX:4453077-4453197 2.01e-07 63_[+1(1.51e-05)]_[+2(1.49e-05)]_41 chrX:15616157-15616277 8.85e-03 37_[+1(9.17e-05)]_3_[+1(3.01e-05)]_\ 3_[+1(1.51e-05)]_3_[+1(6.32e-05)]_42 chrX:11526455-11526575 8.08e-02 120 chr3R:14425622-14425742 1.22e-06 26_[+1(4.57e-05)]_33_[+1(7.87e-05)]_\ [+2(4.42e-05)]_3_[+2(2.98e-05)]_26 chr2R:7087820-7087940 1.37e-03 57_[+3(4.44e-05)]_25_[+3(4.44e-05)]_\ 22 chr3R:19839341-19839461 6.80e-08 60_[+2(1.49e-05)]_11_[+1(1.51e-05)]_\ 33 chrX:11520981-11521101 1.50e-01 16_[+4(5.51e-05)]_96 chrX:20133571-20133691 2.49e-06 84_[+3(6.19e-05)]_11_[+4(1.29e-05)]_\ 9 chr3L:12023276-12023396 6.73e-05 26_[+1(1.51e-05)]_13_[+3(2.89e-05)]_\ 65 chr2R:8578445-8578565 1.12e-07 80_[+1(3.01e-05)]_[+2(1.49e-05)]_24 chr2R:14006248-14006368 4.35e-05 106_[+1(9.17e-05)]_6 chr3L:6574375-6574495 1.89e-05 69_[+4(9.91e-05)]_43 chr3R:17125806-17125926 2.57e-03 103_[+2(2.98e-05)]_9 chrX:11543469-11543589 5.35e-06 70_[+2(2.98e-05)]_2_[+4(1.29e-05)]_\ 32 chrX:7475343-7475463 5.13e-04 13_[+1(1.51e-05)]_14_[+1(1.51e-05)]_\ 77 chrX:15175623-15175743 6.71e-04 51_[+4(1.29e-05)]_3_[+4(1.29e-05)]_\ 13_[+2(1.49e-05)]_29 chr2L:7368940-7369060 3.15e-05 60_[+2(2.98e-05)]_2_[+4(7.01e-05)]_\ 42 chr3L:19497274-19497394 1.49e-05 58_[+2(4.42e-05)]_[+1(1.51e-05)]_46 chr3R:30830577-30830697 3.53e-03 26_[+3(4.44e-05)]_3_[+3(4.44e-05)]_\ 75 chr2R:14414068-14414188 2.57e-01 120 chr3R:16335577-16335697 7.57e-06 29_[+1(6.32e-05)]_2_[+3(1.55e-05)]_\ 73 chr3R:19816897-19817017 7.22e-01 120 chr3R:19101420-19101540 2.38e-06 61_[+1(1.51e-05)]_51 chr2L:16367369-16367489 2.35e-05 22_[+4(1.29e-05)]_4_[+2(2.98e-05)]_\ 78 chr2L:13630082-13630202 2.81e-06 12_[+1(4.57e-05)]_2_[+3(2.89e-05)]_\ 4_[+1(1.51e-05)]_78 chr3R:15316494-15316614 4.80e-03 120 chr3R:16537446-16537566 3.78e-03 87_[+1(6.32e-05)]_25 chr2R:11487130-11487250 1.22e-05 77_[+3(6.19e-05)]_35 chrX:12487624-12487744 8.59e-05 120 chr2L:5227030-5227150 1.05e-05 13_[+5(1.15e-05)]_99 chrX:15620967-15621087 9.88e-01 120 chr3R:16334936-16335056 1.24e-03 102_[+2(2.98e-05)]_10 chrX:21126929-21127049 4.50e-08 30_[+1(1.51e-05)]_8_[+1(6.32e-05)]_\ 8_[+2(2.98e-05)]_50 chr3L:19521232-19521352 9.01e-06 84_[+1(4.57e-05)]_13_[+2(1.49e-05)]_\ 7 chrX:19176290-19176410 6.69e-01 120 chr2R:20611125-20611245 3.52e-05 28_[+1(1.51e-05)]_84 chr2R:11726816-11726936 3.72e-02 120 chr3L:16571153-16571273 1.71e-01 100_[+5(4.61e-05)]_12 chr2L:6276120-6276240 1.49e-04 46_[+4(1.29e-05)]_3_[+4(1.29e-05)]_\ 55 chr3L:19528686-19528806 9.44e-07 71_[+4(2.58e-05)]_22_[+1(1.51e-05)]_\ 11 chr3R:7991790-7991910 2.49e-04 7_[+1(3.01e-05)]_62_[+3(1.55e-05)]_\ 35 chr3L:16568960-16569080 1.51e-02 120 chr3R:14425831-14425951 2.08e-02 81_[+1(6.32e-05)]_31 chr2L:19948115-19948235 6.48e-04 13_[+4(1.29e-05)]_51_[+2(4.42e-05)]_\ 40 chr2R:7588698-7588818 1.17e-03 18_[+2(1.49e-05)]_11_[+2(7.16e-05)]_\ 75 chr2R:18819121-18819241 6.03e-04 3_[+1(3.01e-05)]_13_[+3(9.03e-05)]_\ 4_[+1(1.51e-05)]_10_[+1(1.51e-05)]_7_[+1(3.01e-05)]_43 chr3R:23735774-23735894 9.44e-01 120 chr3R:8223337-8223457 1.60e-04 26_[+1(1.51e-05)]_3_[+3(1.55e-05)]_\ 3_[+3(9.03e-05)]_3_[+3(1.55e-05)]_53 chr3R:23472150-23472270 5.32e-07 13_[+3(6.19e-05)]_3_[+3(4.44e-05)]_\ 4_[+1(9.17e-05)]_15_[+1(1.51e-05)]_1_[+4(7.01e-05)]_44 chr3R:17126025-17126145 7.75e-01 120 chr2L:7071358-7071478 1.13e-03 46_[+4(5.51e-05)]_3_[+4(2.58e-05)]_\ 55 chr2R:24829781-24829901 1.58e-04 21_[+2(1.49e-05)]_13_[+4(2.58e-05)]_\ 70 chr2R:7588499-7588619 1.03e-03 120 chr3L:10365780-10365900 7.88e-06 2_[+4(9.91e-05)]_1_[+1(6.32e-05)]_3_\ [+1(1.51e-05)]_2_[+3(9.03e-05)]_80 chr2R:11726615-11726735 3.51e-06 20_[+1(1.51e-05)]_2_[+2(7.16e-05)]_\ 82 chrX:15643339-15643459 2.52e-05 52_[+1(6.32e-05)]_3_[+1(1.51e-05)]_\ 49 chr3R:15999312-15999432 8.74e-01 120 chr3R:19817102-19817222 3.57e-01 120 chr3L:2893939-2894059 2.77e-03 31_[+1(6.32e-05)]_81 chr3R:5777687-5777807 1.83e-06 52_[+5(1.15e-05)]_3_[+1(1.51e-05)]_\ 49 chr2R:24557802-24557922 1.00e+00 120 chr2R:19628681-19628801 1.22e-05 101_[+1(1.51e-05)]_2_[+2(7.16e-05)]_\ 1 chr3R:19152464-19152584 9.92e-01 120 chr3L:19525875-19525995 7.08e-05 99_[+2(4.42e-05)]_[+1(1.51e-05)]_5 chr3R:14214970-14215090 1.01e-03 59_[+2(1.49e-05)]_53 chrX:13932933-13933053 2.54e-03 13_[+1(1.51e-05)]_99 chr3R:30566320-30566440 4.23e-04 103_[+5(3.46e-05)]_9 chr2L:7542224-7542344 2.37e-05 49_[+4(1.29e-05)]_63 chr2R:13589340-13589460 1.72e-02 59_[+4(9.91e-05)]_53 chr3R:19152259-19152379 8.15e-04 43_[+3(2.89e-05)]_4_[+1(3.01e-05)]_\ 57 chr3L:19136441-19136561 1.04e-05 87_[+2(4.42e-05)]_[+1(1.51e-05)]_17 chr3L:18993709-18993829 2.18e-04 23_[+3(2.89e-05)]_89 chr3L:4489611-4489731 6.17e-04 79_[+5(1.15e-05)]_33 chr2L:5259357-5259477 6.02e-06 63_[+4(1.29e-05)]_49 chr2L:7542519-7542639 4.30e-03 16_[+2(7.16e-05)]_96 chrX:11547076-11547196 2.16e-05 51_[+2(1.49e-05)]_2_[+4(1.29e-05)]_\ 51 chrX:20129529-20129649 7.75e-06 59_[+1(3.01e-05)]_53 chr3L:13265325-13265445 2.47e-01 120 chr3L:8798710-8798830 1.33e-03 17_[+4(5.51e-05)]_95 chr2L:13630281-13630401 5.32e-02 120 chr2L:12343739-12343859 1.85e-03 89_[+1(3.01e-05)]_23 chr3L:4490841-4490961 7.19e-07 [+1(7.87e-05)]_18_[+1(6.32e-05)]_3_\ [+1(7.87e-05)]_10_[+4(1.29e-05)]_57 chr2R:8316794-8316914 1.61e-07 68_[+1(1.51e-05)]_1_[+4(1.29e-05)]_\ 35 chr3L:18994265-18994385 6.24e-05 26_[+4(5.51e-05)]_15_[+2(7.16e-05)]_\ 63 chr3R:28682106-28682226 4.01e-02 120 chr3R:22630168-22630288 5.79e-01 120 chrX:15616362-15616482 1.88e-01 120 chr2L:5233288-5233408 7.78e-04 65_[+1(6.32e-05)]_47 chrX:15175420-15175540 6.37e-02 120 chr3R:31246857-31246977 1.49e-05 99_[+1(4.57e-05)]_13 chr3L:13489492-13489612 3.92e-05 61_[+4(2.58e-05)]_4_[+2(7.16e-05)]_\ 2_[+4(2.58e-05)]_29 chr2L:5235392-5235512 3.90e-01 120 chr3R:9886180-9886300 1.13e-04 [+4(5.51e-05)]_1_[+1(7.87e-05)]_103 chr3L:19522931-19523051 2.41e-01 120 chr3L:10365987-10366107 4.99e-02 120 chr3R:23472355-23472475 9.51e-01 120 chr2L:7071573-7071693 1.17e-01 86_[+5(3.46e-05)]_26 chrX:4453288-4453408 8.61e-03 120 chr3R:22633173-22633293 1.19e-05 16_[+5(1.15e-05)]_1_[+4(1.29e-05)]_\ 87 chr2R:24829981-24830101 1.71e-05 38_[+3(1.55e-05)]_24_[+5(2.17e-05)]_\ 42 chrX:19162654-19162774 1.02e-05 33_[+3(6.19e-05)]_4_[+1(1.51e-05)]_\ 2_[+3(2.89e-05)]_19_[+5(1.15e-05)]_30 chr3R:8118155-8118275 8.42e-04 58_[+4(1.29e-05)]_3_[+4(1.29e-05)]_\ 3_[+4(2.58e-05)]_32 chr3R:16537657-16537777 4.64e-01 120 chrX:9012613-9012733 8.14e-01 120 chrX:334719-334839 5.19e-05 11_[+1(3.01e-05)]_65_[+5(6.75e-05)]_\ 28 chr3R:19101622-19101742 4.97e-01 120 chrX:8939282-8939402 4.53e-04 81_[+4(5.51e-05)]_3_[+4(5.51e-05)]_\ 20 chr3L:8807309-8807429 5.53e-01 120 chr3L:1928377-1928497 3.77e-03 32_[+2(2.98e-05)]_80 chr2L:7140464-7140584 8.89e-01 120 chr3R:19839554-19839674 4.42e-02 120 chrX:13221571-13221691 5.45e-07 45_[+2(1.49e-05)]_1_[+1(1.51e-05)]_\ 58 chr2R:13585945-13586065 3.37e-03 18_[+1(4.57e-05)]_13_[+3(2.89e-05)]_\ 73 chrX:8995155-8995275 6.00e-04 57_[+2(1.49e-05)]_13_[+4(2.58e-05)]_\ 34 chr3L:12023480-12023600 9.92e-01 120 chrX:11543668-11543788 7.97e-01 120 chr2L:5338393-5338513 5.44e-05 42_[+5(2.17e-05)]_39_[+2(7.16e-05)]_\ 23 chr3L:12026521-12026641 7.43e-02 120 chr3L:18992968-18993088 4.16e-04 120 chr3R:16355170-16355290 1.24e-01 120 chr3R:16356961-16357081 1.82e-06 8_[+4(2.58e-05)]_35_[+1(1.51e-05)]_\ 35_[+2(2.98e-05)]_18 chr2R:13590725-13590845 5.89e-01 120 chr3R:28704208-28704328 8.45e-03 80_[+2(7.16e-05)]_32 chr3L:12017348-12017468 3.75e-07 81_[+3(2.89e-05)]_14_[+4(2.58e-05)]_\ 9 chr2R:20611337-20611457 2.55e-01 120 chrX:13946816-13946936 7.74e-07 16_[+2(1.49e-05)]_3_[+2(1.49e-05)]_\ 2_[+1(1.51e-05)]_75 chrX:13933162-13933282 8.58e-01 120 chr3R:12712917-12713037 3.29e-03 57_[+3(2.89e-05)]_14_[+3(9.03e-05)]_\ 33 chr3R:9886381-9886501 1.00e+00 120 chr3R:21434018-21434138 4.11e-05 35_[+1(1.51e-05)]_5_[+1(1.51e-05)]_\ 64 chr3L:16572319-16572439 1.76e-04 82_[+1(1.51e-05)]_2_[+3(1.55e-05)]_\ 20 chr2L:7074021-7074141 3.59e-04 8_[+2(4.42e-05)]_104 chr3R:16335778-16335898 3.81e-03 120 chr2R:11724582-11724702 2.83e-04 82_[+3(1.55e-05)]_30 chrX:12487825-12487945 4.07e-01 120 chr3L:19526083-19526203 2.17e-01 120 chr2R:7088024-7088144 4.12e-01 120 chr3L:2890350-2890470 9.85e-01 120 chrX:14749249-14749369 1.38e-04 42_[+1(4.57e-05)]_13_[+3(9.03e-05)]_\ 1_[+5(6.75e-05)]_40 chr3L:19528897-19529017 3.23e-03 33_[+3(1.55e-05)]_79 chr3L:8787405-8787525 6.02e-01 120 chr3L:16891225-16891345 8.02e-06 55_[+2(2.98e-05)]_2_[+4(2.58e-05)]_\ [+5(1.15e-05)]_39 chr3L:18993940-18994060 3.96e-01 120 chr2R:18817615-18817735 2.47e-01 120 chr3L:16981273-16981393 6.70e-06 5_[+1(4.57e-05)]_44_[+2(7.16e-05)]_\ 10_[+3(9.03e-05)]_37 chr3R:7995859-7995979 5.31e-01 120 chr3L:7859219-7859339 1.00e+00 120 chr2R:11487329-11487449 2.92e-01 120 chr2L:6276325-6276445 1.48e-02 86_[+1(6.32e-05)]_26 chr2R:13589547-13589667 8.02e-01 120 chrX:14098600-14098720 5.10e-05 22_[+4(5.51e-05)]_1_[+3(6.19e-05)]_\ 29_[+4(7.01e-05)]_3_[+4(2.58e-05)]_33 chr2R:13592310-13592430 7.20e-03 36_[+5(3.46e-05)]_76 chr3L:7733598-7733718 1.59e-01 120 chr3R:6973529-6973649 3.44e-04 22_[+1(4.57e-05)]_63_[+2(7.16e-05)]_\ 19 chr3R:22628974-22629094 9.82e-01 120 chr3R:13999381-13999501 5.59e-05 28_[+3(4.44e-05)]_84 chr3R:10614078-10614198 1.98e-03 23_[+1(1.51e-05)]_89 chrX:21127130-21127250 2.75e-02 120 chr2L:6710258-6710378 4.21e-01 120 chr2L:5231141-5231261 5.50e-01 120 chr2R:12913241-12913361 1.00e+00 120 chrX:15621167-15621287 3.80e-03 1_[+2(4.42e-05)]_111 chrX:15292616-15292736 7.44e-02 120 chr3L:19939233-19939353 5.69e-04 85_[+2(1.49e-05)]_2_[+4(1.29e-05)]_\ 17 chr2L:5227232-5227352 8.32e-01 120 chr3R:9759371-9759491 5.56e-03 [+3(2.89e-05)]_3_[+3(2.89e-05)]_101 chr2R:14927076-14927196 8.74e-01 120 chr2L:492350-492470 1.07e-02 120 chrX:19172186-19172306 2.33e-02 120 chr2L:7537592-7537712 1.59e-01 120 chr2L:2494372-2494492 5.61e-01 120 chr3L:19497481-19497601 9.15e-01 120 chr3L:9125060-9125180 1.37e-02 120 chr2L:10500922-10501042 2.56e-01 120 chr3L:7781887-7782007 2.69e-05 76_[+1(1.51e-05)]_36 chrX:13645043-13645163 2.92e-04 7_[+4(5.51e-05)]_3_[+4(9.91e-05)]_\ 37_[+2(4.42e-05)]_49 chr3L:19136706-19136826 6.46e-01 120 chrX:2348466-2348586 5.23e-01 120 chr2L:7537894-7538014 9.60e-01 120 chr2L:5238645-5238765 2.07e-01 120 chr2L:9386367-9386487 4.93e-01 120 chrX:12760586-12760706 1.41e-04 120 chr3R:16525897-16526017 8.98e-01 120 chr3R:17231845-17231965 2.52e-03 78_[+3(9.03e-05)]_22_[+1(1.51e-05)]_\ 4 chr3R:6970697-6970817 2.51e-02 34_[+5(2.17e-05)]_78 chr2L:7702817-7702937 1.51e-03 50_[+1(3.01e-05)]_29_[+1(1.51e-05)]_\ 25 chr3R:23738166-23738286 3.49e-03 41_[+1(4.57e-05)]_71 chr2R:14023916-14024036 2.47e-02 100_[+1(6.32e-05)]_12 chr3L:1576646-1576766 1.30e-05 63_[+2(1.49e-05)]_49 chr2R:7531577-7531697 5.78e-01 120 chr2R:24832457-24832577 7.26e-01 120 chr3L:19527681-19527801 3.53e-02 65_[+3(9.03e-05)]_47 chr2R:14418503-14418623 8.51e-01 120 chr2L:6274510-6274630 9.75e-01 120 chr2L:5207290-5207410 1.53e-01 120 chr3L:16569160-16569280 8.28e-03 120 chr2R:14042598-14042718 5.30e-01 120 chr3R:30566521-30566641 9.80e-01 120 chr3R:8118361-8118481 7.02e-01 120 chr3R:7989085-7989205 9.94e-01 120 chrX:19171006-19171126 2.07e-01 120 chr2L:5260295-5260415 1.12e-01 120 chr3R:13450430-13450550 4.31e-03 82_[+1(1.51e-05)]_30 chr2L:7542738-7542858 1.33e-01 120 chr3R:21825258-21825378 6.49e-01 120 chrX:20133773-20133893 2.90e-01 120 chr3L:15267875-15267995 8.53e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************