******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8319.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:24547588-24547708 1.0000 120 chrX:19296201-19296321 1.0000 120 chr3R:15553687-15553807 1.0000 120 chrX:6328959-6329079 1.0000 120 chr2R:19373250-19373370 1.0000 120 chr3R:23605436-23605556 1.0000 120 chrX:4173491-4173611 1.0000 120 chrX:21279593-21279713 1.0000 120 chrX:14748671-14748791 1.0000 120 chrX:1560159-1560279 1.0000 120 chr2R:7063093-7063213 1.0000 120 chr2L:4949864-4949984 1.0000 120 chr3L:16019721-16019841 1.0000 120 chr3L:3429323-3429443 1.0000 120 chr2R:17761358-17761478 1.0000 120 chr3R:20567971-20568091 1.0000 120 chr3R:16203129-16203249 1.0000 120 chrX:14653872-14653992 1.0000 120 chrX:2355980-2356100 1.0000 120 chr3R:28848838-28848958 1.0000 120 chr3R:11822424-11822544 1.0000 120 chr2L:1007243-1007363 1.0000 120 chr2L:19108478-19108598 1.0000 120 chr3L:9092829-9092949 1.0000 120 chrX:16902356-16902476 1.0000 120 chr2L:5310175-5310295 1.0000 120 chrX:15143606-15143726 1.0000 120 chrX:19387722-19387842 1.0000 120 chr3L:9004837-9004957 1.0000 120 chr3L:16385298-16385418 1.0000 120 chr3L:16975179-16975299 1.0000 120 chr3L:8178453-8178573 1.0000 120 chrX:14926870-14926990 1.0000 120 chr3R:16624533-16624653 1.0000 120 chr2R:10111504-10111624 1.0000 120 chrX:17816146-17816266 1.0000 120 chr3R:8349381-8349501 1.0000 120 chr3L:20233783-20233903 1.0000 120 chr2R:23378580-23378700 1.0000 120 chr2L:12433701-12433821 1.0000 120 chr3R:21862652-21862772 1.0000 120 chrX:13245111-13245231 1.0000 120 chrX:6999243-6999363 1.0000 120 chr3R:14024541-14024661 1.0000 120 chrX:13254871-13254991 1.0000 120 chr3R:25881404-25881524 1.0000 120 chr2L:18982096-18982216 1.0000 120 chr2R:7586573-7586693 1.0000 120 chr2R:7246539-7246659 1.0000 120 chr3R:24593945-24594065 1.0000 120 chr3R:12638154-12638274 1.0000 120 chr2L:9960517-9960637 1.0000 120 chr3L:14154779-14154899 1.0000 120 chr3R:17382574-17382694 1.0000 120 chrX:18684250-18684370 1.0000 120 chr3L:4394472-4394592 1.0000 120 chrX:339958-340078 1.0000 120 chr3R:21065933-21066053 1.0000 120 chr3R:15631019-15631139 1.0000 120 chr3L:682577-682697 1.0000 120 chr3R:18787372-18787492 1.0000 120 chr3L:10928895-10929015 1.0000 120 chr2L:10364420-10364540 1.0000 120 chr3R:8107050-8107170 1.0000 120 chr3R:8949414-8949534 1.0000 120 chr3R:29313190-29313310 1.0000 120 chr3L:6269168-6269288 1.0000 120 chr3R:4713914-4714034 1.0000 120 chrX:18935113-18935233 1.0000 120 chr3R:25183550-25183670 1.0000 120 chrX:12014929-12015049 1.0000 120 chr2L:7859157-7859277 1.0000 120 chr3R:26429759-26429879 1.0000 120 chr2R:17136106-17136226 1.0000 120 chr2L:16590824-16590944 1.0000 120 chrX:18484106-18484226 1.0000 120 chrX:18994348-18994468 1.0000 120 chr2L:17249672-17249792 1.0000 120 chr2L:4797704-4797824 1.0000 120 chr2L:1574171-1574291 1.0000 120 chr3R:23148603-23148723 1.0000 120 chr3L:20953401-20953521 1.0000 120 chrX:18270467-18270587 1.0000 120 chrX:17187669-17187789 1.0000 120 chr2R:6242595-6242715 1.0000 120 chr3R:8980045-8980165 1.0000 120 chrX:16733786-16733906 1.0000 120 chr2R:15529032-15529152 1.0000 120 chr2R:24955766-24955886 1.0000 120 chr3R:31718350-31718470 1.0000 120 chr3R:8810998-8811118 1.0000 120 chr3R:8038041-8038161 1.0000 120 chrX:18834538-18834658 1.0000 120 chr3L:8813586-8813706 1.0000 120 chrX:14897779-14897899 1.0000 120 chr3R:15495813-15495933 1.0000 120 chr2L:7611738-7611858 1.0000 120 chr2L:18372222-18372342 1.0000 120 chr3R:8349589-8349709 1.0000 120 chr3R:29762417-29762537 1.0000 120 chr3R:22539043-22539163 1.0000 120 chr3R:30022713-30022833 1.0000 120 chr2R:18108914-18109034 1.0000 120 chr3L:8461336-8461456 1.0000 120 chr3R:16238177-16238297 1.0000 120 chr2L:21308293-21308413 1.0000 120 chr2L:16593979-16594099 1.0000 120 chrX:17600230-17600350 1.0000 120 chr3L:21739111-21739231 1.0000 120 chr2L:6554763-6554883 1.0000 120 chr2R:17845750-17845870 1.0000 120 chr3R:8670070-8670190 1.0000 120 chr3L:2117148-2117268 1.0000 120 chr3L:1458147-1458267 1.0000 120 chr3R:29083631-29083751 1.0000 120 chrX:9582168-9582288 1.0000 120 chr2R:20065657-20065777 1.0000 120 chr3R:16234376-16234496 1.0000 120 chr2L:20880677-20880797 1.0000 120 chr3L:16489964-16490084 1.0000 120 chr3R:27199491-27199611 1.0000 120 chrX:1826271-1826391 1.0000 120 chr3L:6270418-6270538 1.0000 120 chr2L:19162904-19163024 1.0000 120 chr3L:818501-818621 1.0000 120 chrX:11658578-11658698 1.0000 120 chr2L:11051851-11051971 1.0000 120 chr3R:30461658-30461778 1.0000 120 chr2L:14572224-14572344 1.0000 120 chr3R:29758500-29758620 1.0000 120 chr2L:20913124-20913244 1.0000 120 chrX:5301004-5301124 1.0000 120 chr3L:13407098-13407218 1.0000 120 chr3R:14847342-14847462 1.0000 120 chr3R:10708054-10708174 1.0000 120 chrX:3867106-3867226 1.0000 120 chr3R:14691493-14691613 1.0000 120 chr2L:21847473-21847593 1.0000 120 chrX:7537922-7538042 1.0000 120 chr3L:15641645-15641765 1.0000 120 chrX:17726691-17726811 1.0000 120 chr3R:21837199-21837319 1.0000 120 chrX:3289521-3289641 1.0000 120 chr2R:20136805-20136925 1.0000 120 chr3R:21896016-21896136 1.0000 120 chrX:4175949-4176069 1.0000 120 chr2L:18341048-18341168 1.0000 120 chr2L:5483262-5483382 1.0000 120 chr2L:4348714-4348834 1.0000 120 chr3R:11614692-11614812 1.0000 120 chr2L:675003-675123 1.0000 120 chr4:488844-488964 1.0000 120 chrX:21068065-21068185 1.0000 120 chr3R:27140067-27140187 1.0000 120 chr3L:10785979-10786099 1.0000 120 chr3L:6472001-6472121 1.0000 120 chr2R:19153452-19153572 1.0000 120 chr3L:17506141-17506261 1.0000 120 chr2R:14317162-14317282 1.0000 120 chr3L:2830140-2830260 1.0000 120 chr2R:11048064-11048184 1.0000 120 chr3L:5128449-5128569 1.0000 120 chr2R:22737921-22738041 1.0000 120 chr3L:736124-736244 1.0000 120 chr2L:5288318-5288438 1.0000 120 chrX:3147099-3147219 1.0000 120 chr2L:20802313-20802433 1.0000 120 chrX:17678093-17678213 1.0000 120 chr2R:8307851-8307971 1.0000 120 chr2L:18146765-18146885 1.0000 120 chrX:3867309-3867429 1.0000 120 chr3L:12030671-12030791 1.0000 120 chr3R:14002154-14002274 1.0000 120 chr2R:7615622-7615742 1.0000 120 chr2R:10559925-10560045 1.0000 120 chr3L:10928084-10928204 1.0000 120 chr2L:2432926-2433046 1.0000 120 chr2R:14345437-14345557 1.0000 120 chrX:6059283-6059403 1.0000 120 chr2L:6508757-6508877 1.0000 120 chrX:10104603-10104723 1.0000 120 chr3R:21944050-21944170 1.0000 120 chrX:2334700-2334820 1.0000 120 chrX:9468410-9468530 1.0000 120 chr3L:4619975-4620095 1.0000 120 chr2L:18645629-18645749 1.0000 120 chr3R:4961569-4961689 1.0000 120 chr3R:8847418-8847538 1.0000 120 chr2R:19849309-19849429 1.0000 120 chr3R:22494626-22494746 1.0000 120 chr3L:1064458-1064578 1.0000 120 chrX:12662991-12663111 1.0000 120 chr3L:8459421-8459541 1.0000 120 chrX:12000353-12000473 1.0000 120 chr2R:15740731-15740851 1.0000 120 chr3R:29778364-29778484 1.0000 120 chr3L:4836495-4836615 1.0000 120 chr2R:12013424-12013544 1.0000 120 chr3L:14451703-14451823 1.0000 120 chr2R:14968035-14968155 1.0000 120 chr2R:14903829-14903949 1.0000 120 chr3R:21899329-21899449 1.0000 120 chrX:7491021-7491141 1.0000 120 chr3R:14498197-14498317 1.0000 120 chr2R:9557611-9557731 1.0000 120 chr2R:11033729-11033849 1.0000 120 chr3L:531289-531409 1.0000 120 chr2L:10989070-10989190 1.0000 120 chrX:15453194-15453314 1.0000 120 chrX:5923252-5923372 1.0000 120 chr3R:21887628-21887748 1.0000 120 chr3R:30259704-30259824 1.0000 120 chr2R:10600519-10600639 1.0000 120 chr3L:16011372-16011492 1.0000 120 chr2L:20463499-20463619 1.0000 120 chr2R:14081718-14081838 1.0000 120 chrX:13278216-13278336 1.0000 120 chr3L:746491-746611 1.0000 120 chr3L:12410865-12410985 1.0000 120 chr3R:27224880-27225000 1.0000 120 chr3L:777426-777546 1.0000 120 chr3L:16147911-16148031 1.0000 120 chrX:779512-779632 1.0000 120 chr3R:27186355-27186475 1.0000 120 chr3R:13934862-13934982 1.0000 120 chr3L:5182437-5182557 1.0000 120 chr3R:30805239-30805359 1.0000 120 chr3R:14356794-14356914 1.0000 120 chr2L:18628279-18628399 1.0000 120 chr3R:23486854-23486974 1.0000 120 chr2R:9674784-9674904 1.0000 120 chrX:8891161-8891281 1.0000 120 chr3L:14622516-14622636 1.0000 120 chr2L:21314024-21314144 1.0000 120 chr3R:11338427-11338547 1.0000 120 chrX:3060235-3060355 1.0000 120 chrX:3722343-3722463 1.0000 120 chr2L:7104705-7104825 1.0000 120 chr3L:4545818-4545938 1.0000 120 chrX:9892995-9893115 1.0000 120 chr3R:9913543-9913663 1.0000 120 chr2L:7503881-7504001 1.0000 120 chr3R:30800394-30800514 1.0000 120 chrX:3380243-3380363 1.0000 120 chrX:3411973-3412093 1.0000 120 chr3L:824604-824724 1.0000 120 chr2R:22570711-22570831 1.0000 120 chr3L:14253537-14253657 1.0000 120 chr2R:18583372-18583492 1.0000 120 chr2R:14482545-14482665 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8319/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8319.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.194 G 0.189 T 0.306 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.194 G 0.189 T 0.306 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KGGTSACC MEME-1 width = 8 sites = 89 llr = 786 E-value = 1.3e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::219:: pos.-specific C ::::5:aa probability G 3aa:4::: matrix T 4::8:1:: bits 2.4 * ** 2.2 ** ** 1.9 ** ** 1.7 ** ** Relative 1.4 ** ** Entropy 1.2 ** *** (12.7 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TGGTCACC consensus G G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5182437-5182557 94 4.69e-06 GTGGGTGGCG GGGTCACC AGAGAGGATG chr3R:10708054-10708174 39 4.69e-06 CCTAAGAACA GGGTCACC AATCTGGGTG chr2L:6554763-6554883 75 4.69e-06 ACGACGGTCG GGGTCACC ACCACCACTC chrX:17600230-17600350 91 4.69e-06 GCCAGCCAGG GGGTCACC ACAACCAGAG chrX:16733786-16733906 68 4.69e-06 CTTTGCGTTG GGGTCACC ATTTATGGTG chrX:18270467-18270587 59 4.69e-06 CCGCACATCG GGGTCACC TTTGCCGCCA chr3R:23148603-23148723 99 4.69e-06 cagccaAGTT GGGTCACC ACATCTTCAC chr2L:17249672-17249792 48 4.69e-06 AGTTTGGTCG GGGTCACC ACTTAGCACC chrX:18994348-18994468 85 4.69e-06 GACGACGTCG GGGTCACC ACTCTGCCAC chr3R:25183550-25183670 74 4.69e-06 TTTCCCCGTG GGGTCACC ACCTCCTGCC chr2L:9960517-9960637 113 4.69e-06 TAACTATGCG GGGTCACC chr2L:18982096-18982216 57 4.69e-06 CAGCAAGTCG GGGTCACC ACAATGGCTG chrX:13254871-13254991 80 4.69e-06 TTGCCAAACG GGGTCACC ACCATATAAT chr2R:23378580-23378700 46 4.69e-06 CGTTAGATCG GGGTCACC GTATTAAATT chrX:14926870-14926990 56 4.69e-06 ATACTCATCG GGGTCACC AAGCCCTACA chrX:19387722-19387842 49 4.69e-06 acaaccagcc gggtcacc aagttgccaa chr2L:5310175-5310295 54 4.69e-06 ATGAGCATCG GGGTCACC AGCCACGTTA chrX:16902356-16902476 44 4.69e-06 GTAATGCGTG GGGTCACC CAAAAGGGGT chrX:14748671-14748791 83 4.69e-06 ATTCGCGTCG GGGTCACC AAACAAACAA chr2R:19373250-19373370 55 4.69e-06 CAGGAGATTG GGGTCACC AGGGGCTACT chr3L:682577-682697 25 9.26e-06 gtgtgtgtgt gggtgACC TCCCGCCCGG chr3R:29313190-29313310 12 1.69e-05 GATATTTGAA TGGTCACC TTTTGTAGAA chrX:18484106-18484226 93 2.43e-05 CTAATTAAAG TGGTGACC CAGATACTTA chr2L:7859157-7859277 61 2.43e-05 TGCCCATAAA TGGTGACC TCCCGAAAAT chr2L:10364420-10364540 89 2.43e-05 CTCGTCTCGC TGGTGACC TTAGTGGTCC chr3L:4394472-4394592 82 2.43e-05 TCGCACGAAT TGGTGACC CCGATTGTGC chrX:18684250-18684370 42 2.43e-05 TGGTGAATTT TGGTGACC CCGATCCGCA chr3R:24593945-24594065 81 2.43e-05 TTGCCGCTGG TGGTGACC GTTGATTCTC chr3R:25881404-25881524 53 2.43e-05 AACCGAAAAG TGGTGACC CTTAGAAGAT chrX:6999243-6999363 7 2.43e-05 CCCTCC TGGTGACC TCGCGCCAAT chrX:13245111-13245231 56 2.43e-05 CTGCACGAGG TGGTGACC CCGACGACTG chr3R:21862652-21862772 40 2.43e-05 GCCCGTGGAG TGGTGACC CCGACCGGCT chr2R:10111504-10111624 78 2.43e-05 CAAGGTGAGT TGGTGACC TCTGTCAAGT chr3L:16385298-16385418 56 2.43e-05 TGCACTCAAT TGGTGACC CCGACGTTGA chrX:15143606-15143726 69 2.43e-05 GCTGGACAGG TGGTGACC CCGACAACGA chr2L:1007243-1007363 54 2.43e-05 CTGCGCTCTG TGGTGACC CCGActcctg chr3R:28848838-28848958 69 2.43e-05 gatggGGTGT TGGTGACC CCGTCCGTGG chrX:2355980-2356100 58 2.43e-05 GTCTGGTACT TGGTGACC CCGATTTGGG chrX:14653872-14653992 66 2.43e-05 tgtgagtttg tggtgACC GCGCTTGAGA chr2L:4949864-4949984 42 2.43e-05 TACATTTTGT TGGTGACC CCGATTTATA chrX:6328959-6329079 51 2.43e-05 AACCACTGTT TGGTGACC CCGCTCGGTT chr2L:10989070-10989190 32 3.20e-05 TTCCATAGGA AGGTCACC AAAATCCGGA chr4:488844-488964 52 3.20e-05 TCAGGGTCAG AGGTCACC AGAAAGGAGA chr2L:21308293-21308413 56 3.20e-05 TCCAGGTGGG AGGTCACC ATGCTCATGC chr2R:15529032-15529152 66 3.20e-05 CAACGCGGAG AGGTCACC AGTTACGGAC chr3R:14024541-14024661 57 3.20e-05 GCAGCATTGG AGGTCACC ACTGACGCCC chr3L:9004837-9004957 34 3.20e-05 CCGTGAGAGG AGGTCACC AGAACCGCTC chr3R:20567971-20568091 50 3.20e-05 ACATCGTGTG AGGTCACC ACTGGCGACT chr2R:7063093-7063213 61 3.20e-05 TTAATATTGG AGGTCACC TGGCCACTAG chr3R:30022713-30022833 54 3.95e-05 GCGAACCACA AGGTGACC CCAAGTCGAG chr3R:11822424-11822544 30 3.95e-05 ATAAAATTGT AGGTGACC CAAAACACTG chr2R:9674784-9674904 63 4.43e-05 AACCCAGCTT GGGACACC TTATAATGAA chr3R:17382574-17382694 85 5.35e-05 CGTTGCTTTG GGGTCTCC CCTTTGCCAC chr3L:16975179-16975299 37 5.35e-05 ACATATTTCG GGGTCTCC AAAGTTCGTA chr2L:19108478-19108598 75 5.35e-05 CAAAAATGCG GGGTCTCC ACTGGAAAAC chr3L:3429323-3429443 60 5.35e-05 CTTCAGCTCG GGGTCTCC AGTTCTCCTC chrX:19296201-19296321 57 5.35e-05 GCCATGATCG GGGTCTCC TTTTTCTCTA chrX:9582168-9582288 6 8.07e-05 GACAC TGGAGACC CTGGCGATAG chr3R:8949414-8949534 10 8.07e-05 GATGCGAAC TGGAGACC CCACTTCGCA chr2R:7246539-7246659 39 8.07e-05 AATTGCACCT TGGAGACC TCCACGCCGG chr2R:7586573-7586693 37 8.07e-05 CATTTGCAAC TGGAGACC GCGACACCTT chr3R:16624533-16624653 11 8.07e-05 AAGGTCCAGC TGGAGACC CCGATGCTGG chr3L:9092829-9092949 98 8.07e-05 TTTTTTTGTG TGGAGACC CCGACTGGTT chrX:21279593-21279713 55 8.07e-05 TGGGAGCCTT TGGAGACC TCGCTGTTTG chrX:4173491-4173611 63 8.07e-05 AACTCCGACA TGGAGACC CCGACATGAA chr3R:15553687-15553807 73 8.07e-05 GGGGTTCTTC TGGAGACC CCGACACTGA chr2R:24547588-24547708 50 8.07e-05 GCTGAAAAGT TGGAGACC CACGACGGGT chr3L:8459421-8459541 8 9.55e-05 TTCGATA GGGTAACC TACTTGGAAA chr3L:736124-736244 90 1.08e-04 TGCCGTGCAC TGGTAACC TCTGTGGATG chr3R:15495813-15495933 79 1.08e-04 ATCAGTCGCC TGGTAACC TCGATTTAGC chr3R:8980045-8980165 77 1.08e-04 CAGAAACAAA TGGTAACC TTTCACAATT chr3R:4713914-4714034 27 1.08e-04 CAGAAACAGT TGGTAACC TCCACCACAC chr3L:16019721-16019841 30 1.08e-04 ACGGTGGCGT TGGTAACC TCAGAAAATC chr3R:16234376-16234496 61 1.36e-04 GAGAGCAAGC AGGTCTCC AAAAATAATG chr2R:6242595-6242715 17 1.36e-04 CCCACTGCTG AGGTCTCC AGCTTTCAGT chrX:12014929-12015049 22 1.36e-04 CATCTCTTTA AGGTCTCC ACTTGACCAA chr3R:21065933-21066053 103 1.36e-04 CAGTCCATCG AGGTCTCC AAAAGAAGTT chr3L:20233783-20233903 40 1.36e-04 ATACGCAATC AGGAGACC TCCTGATACT chrX:17816146-17816266 83 1.36e-04 GATTGGGACG AGGTCTCC AACTGAAACG chr3R:16203129-16203249 49 1.36e-04 GAGCTTGTGG AGGTCTCC AAAGTTGGGA chrX:1560159-1560279 4 1.36e-04 TGA AGGTCTCC ACCGTTGGTT chr3L:8178453-8178573 49 1.48e-04 AAGCTTGTCG CGGTGACC TCTTGGCAGT chr2R:17761358-17761478 76 1.48e-04 CAAGCTTCTC CGGTGACC CCGACAGACC chr3L:746491-746611 88 1.70e-04 ACTTATCACA TGGGCACC ACAAGATACC chr2R:17136106-17136226 94 1.70e-04 TCGAAATAGC TGGGCACC AACATATTTC chr2L:21847473-21847593 94 2.12e-04 ATGTATGCAT GGGAAACC ATCTGAACCC chrX:18935113-18935233 113 2.24e-04 TCCCGCATCT GCGTGACC chrX:3060235-3060355 19 2.49e-04 CTACACACGC TCGTCACC AAATGCAATA chr3R:8349381-8349501 7 2.49e-04 CTCGAT TGGAAACC TCGATTGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5182437-5182557 4.7e-06 93_[+1]_19 chr3R:10708054-10708174 4.7e-06 38_[+1]_74 chr2L:6554763-6554883 4.7e-06 74_[+1]_38 chrX:17600230-17600350 4.7e-06 90_[+1]_22 chrX:16733786-16733906 4.7e-06 67_[+1]_45 chrX:18270467-18270587 4.7e-06 58_[+1]_54 chr3R:23148603-23148723 4.7e-06 98_[+1]_14 chr2L:17249672-17249792 4.7e-06 47_[+1]_65 chrX:18994348-18994468 4.7e-06 84_[+1]_28 chr3R:25183550-25183670 4.7e-06 73_[+1]_39 chr2L:9960517-9960637 4.7e-06 112_[+1] chr2L:18982096-18982216 4.7e-06 56_[+1]_56 chrX:13254871-13254991 4.7e-06 79_[+1]_33 chr2R:23378580-23378700 4.7e-06 45_[+1]_67 chrX:14926870-14926990 4.7e-06 55_[+1]_57 chrX:19387722-19387842 4.7e-06 48_[+1]_64 chr2L:5310175-5310295 4.7e-06 53_[+1]_59 chrX:16902356-16902476 4.7e-06 43_[+1]_69 chrX:14748671-14748791 4.7e-06 82_[+1]_30 chr2R:19373250-19373370 4.7e-06 54_[+1]_58 chr3L:682577-682697 9.3e-06 24_[+1]_88 chr3R:29313190-29313310 1.7e-05 11_[+1]_101 chrX:18484106-18484226 2.4e-05 92_[+1]_20 chr2L:7859157-7859277 2.4e-05 60_[+1]_52 chr2L:10364420-10364540 2.4e-05 88_[+1]_24 chr3L:4394472-4394592 2.4e-05 81_[+1]_31 chrX:18684250-18684370 2.4e-05 41_[+1]_71 chr3R:24593945-24594065 2.4e-05 80_[+1]_32 chr3R:25881404-25881524 2.4e-05 52_[+1]_60 chrX:6999243-6999363 2.4e-05 6_[+1]_106 chrX:13245111-13245231 2.4e-05 55_[+1]_57 chr3R:21862652-21862772 2.4e-05 39_[+1]_73 chr2R:10111504-10111624 2.4e-05 77_[+1]_35 chr3L:16385298-16385418 2.4e-05 55_[+1]_57 chrX:15143606-15143726 2.4e-05 68_[+1]_44 chr2L:1007243-1007363 2.4e-05 53_[+1]_59 chr3R:28848838-28848958 2.4e-05 68_[+1]_44 chrX:2355980-2356100 2.4e-05 57_[+1]_55 chrX:14653872-14653992 2.4e-05 65_[+1]_47 chr2L:4949864-4949984 2.4e-05 41_[+1]_71 chrX:6328959-6329079 2.4e-05 50_[+1]_62 chr2L:10989070-10989190 3.2e-05 31_[+1]_81 chr4:488844-488964 3.2e-05 51_[+1]_61 chr2L:21308293-21308413 3.2e-05 55_[+1]_57 chr2R:15529032-15529152 3.2e-05 65_[+1]_47 chr3R:14024541-14024661 3.2e-05 56_[+1]_56 chr3L:9004837-9004957 3.2e-05 33_[+1]_79 chr3R:20567971-20568091 3.2e-05 49_[+1]_63 chr2R:7063093-7063213 3.2e-05 60_[+1]_52 chr3R:30022713-30022833 3.9e-05 53_[+1]_59 chr3R:11822424-11822544 3.9e-05 29_[+1]_83 chr2R:9674784-9674904 4.4e-05 62_[+1]_50 chr3R:17382574-17382694 5.4e-05 84_[+1]_28 chr3L:16975179-16975299 5.4e-05 36_[+1]_76 chr2L:19108478-19108598 5.4e-05 74_[+1]_38 chr3L:3429323-3429443 5.4e-05 59_[+1]_53 chrX:19296201-19296321 5.4e-05 56_[+1]_56 chrX:9582168-9582288 8.1e-05 5_[+1]_107 chr3R:8949414-8949534 8.1e-05 9_[+1]_103 chr2R:7246539-7246659 8.1e-05 38_[+1]_74 chr2R:7586573-7586693 8.1e-05 36_[+1]_76 chr3R:16624533-16624653 8.1e-05 10_[+1]_102 chr3L:9092829-9092949 8.1e-05 97_[+1]_15 chrX:21279593-21279713 8.1e-05 54_[+1]_58 chrX:4173491-4173611 8.1e-05 62_[+1]_50 chr3R:15553687-15553807 8.1e-05 72_[+1]_40 chr2R:24547588-24547708 8.1e-05 49_[+1]_63 chr3L:8459421-8459541 9.6e-05 7_[+1]_105 chr3L:736124-736244 0.00011 89_[+1]_23 chr3R:15495813-15495933 0.00011 78_[+1]_34 chr3R:8980045-8980165 0.00011 76_[+1]_36 chr3R:4713914-4714034 0.00011 26_[+1]_86 chr3L:16019721-16019841 0.00011 29_[+1]_83 chr3R:16234376-16234496 0.00014 60_[+1]_52 chr2R:6242595-6242715 0.00014 16_[+1]_96 chrX:12014929-12015049 0.00014 21_[+1]_91 chr3R:21065933-21066053 0.00014 102_[+1]_10 chr3L:20233783-20233903 0.00014 39_[+1]_73 chrX:17816146-17816266 0.00014 82_[+1]_30 chr3R:16203129-16203249 0.00014 48_[+1]_64 chrX:1560159-1560279 0.00014 3_[+1]_109 chr3L:8178453-8178573 0.00015 48_[+1]_64 chr2R:17761358-17761478 0.00015 75_[+1]_37 chr3L:746491-746611 0.00017 87_[+1]_25 chr2R:17136106-17136226 0.00017 93_[+1]_19 chr2L:21847473-21847593 0.00021 93_[+1]_19 chrX:18935113-18935233 0.00022 112_[+1] chrX:3060235-3060355 0.00025 18_[+1]_94 chr3R:8349381-8349501 0.00025 6_[+1]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGGTSACC width=8 seqs=89 chr3L:5182437-5182557 ( 94) GGGTCACC 1 chr3R:10708054-10708174 ( 39) GGGTCACC 1 chr2L:6554763-6554883 ( 75) GGGTCACC 1 chrX:17600230-17600350 ( 91) GGGTCACC 1 chrX:16733786-16733906 ( 68) GGGTCACC 1 chrX:18270467-18270587 ( 59) GGGTCACC 1 chr3R:23148603-23148723 ( 99) GGGTCACC 1 chr2L:17249672-17249792 ( 48) GGGTCACC 1 chrX:18994348-18994468 ( 85) GGGTCACC 1 chr3R:25183550-25183670 ( 74) GGGTCACC 1 chr2L:9960517-9960637 ( 113) GGGTCACC 1 chr2L:18982096-18982216 ( 57) GGGTCACC 1 chrX:13254871-13254991 ( 80) GGGTCACC 1 chr2R:23378580-23378700 ( 46) GGGTCACC 1 chrX:14926870-14926990 ( 56) GGGTCACC 1 chrX:19387722-19387842 ( 49) GGGTCACC 1 chr2L:5310175-5310295 ( 54) GGGTCACC 1 chrX:16902356-16902476 ( 44) GGGTCACC 1 chrX:14748671-14748791 ( 83) GGGTCACC 1 chr2R:19373250-19373370 ( 55) GGGTCACC 1 chr3L:682577-682697 ( 25) GGGTGACC 1 chr3R:29313190-29313310 ( 12) TGGTCACC 1 chrX:18484106-18484226 ( 93) TGGTGACC 1 chr2L:7859157-7859277 ( 61) TGGTGACC 1 chr2L:10364420-10364540 ( 89) TGGTGACC 1 chr3L:4394472-4394592 ( 82) TGGTGACC 1 chrX:18684250-18684370 ( 42) TGGTGACC 1 chr3R:24593945-24594065 ( 81) TGGTGACC 1 chr3R:25881404-25881524 ( 53) TGGTGACC 1 chrX:6999243-6999363 ( 7) TGGTGACC 1 chrX:13245111-13245231 ( 56) TGGTGACC 1 chr3R:21862652-21862772 ( 40) TGGTGACC 1 chr2R:10111504-10111624 ( 78) TGGTGACC 1 chr3L:16385298-16385418 ( 56) TGGTGACC 1 chrX:15143606-15143726 ( 69) TGGTGACC 1 chr2L:1007243-1007363 ( 54) TGGTGACC 1 chr3R:28848838-28848958 ( 69) TGGTGACC 1 chrX:2355980-2356100 ( 58) TGGTGACC 1 chrX:14653872-14653992 ( 66) TGGTGACC 1 chr2L:4949864-4949984 ( 42) TGGTGACC 1 chrX:6328959-6329079 ( 51) TGGTGACC 1 chr2L:10989070-10989190 ( 32) AGGTCACC 1 chr4:488844-488964 ( 52) AGGTCACC 1 chr2L:21308293-21308413 ( 56) AGGTCACC 1 chr2R:15529032-15529152 ( 66) AGGTCACC 1 chr3R:14024541-14024661 ( 57) AGGTCACC 1 chr3L:9004837-9004957 ( 34) AGGTCACC 1 chr3R:20567971-20568091 ( 50) AGGTCACC 1 chr2R:7063093-7063213 ( 61) AGGTCACC 1 chr3R:30022713-30022833 ( 54) AGGTGACC 1 chr3R:11822424-11822544 ( 30) AGGTGACC 1 chr2R:9674784-9674904 ( 63) GGGACACC 1 chr3R:17382574-17382694 ( 85) GGGTCTCC 1 chr3L:16975179-16975299 ( 37) GGGTCTCC 1 chr2L:19108478-19108598 ( 75) GGGTCTCC 1 chr3L:3429323-3429443 ( 60) GGGTCTCC 1 chrX:19296201-19296321 ( 57) GGGTCTCC 1 chrX:9582168-9582288 ( 6) TGGAGACC 1 chr3R:8949414-8949534 ( 10) TGGAGACC 1 chr2R:7246539-7246659 ( 39) TGGAGACC 1 chr2R:7586573-7586693 ( 37) TGGAGACC 1 chr3R:16624533-16624653 ( 11) TGGAGACC 1 chr3L:9092829-9092949 ( 98) TGGAGACC 1 chrX:21279593-21279713 ( 55) TGGAGACC 1 chrX:4173491-4173611 ( 63) TGGAGACC 1 chr3R:15553687-15553807 ( 73) TGGAGACC 1 chr2R:24547588-24547708 ( 50) TGGAGACC 1 chr3L:8459421-8459541 ( 8) GGGTAACC 1 chr3L:736124-736244 ( 90) TGGTAACC 1 chr3R:15495813-15495933 ( 79) TGGTAACC 1 chr3R:8980045-8980165 ( 77) TGGTAACC 1 chr3R:4713914-4714034 ( 27) TGGTAACC 1 chr3L:16019721-16019841 ( 30) TGGTAACC 1 chr3R:16234376-16234496 ( 61) AGGTCTCC 1 chr2R:6242595-6242715 ( 17) AGGTCTCC 1 chrX:12014929-12015049 ( 22) AGGTCTCC 1 chr3R:21065933-21066053 ( 103) AGGTCTCC 1 chr3L:20233783-20233903 ( 40) AGGAGACC 1 chrX:17816146-17816266 ( 83) AGGTCTCC 1 chr3R:16203129-16203249 ( 49) AGGTCTCC 1 chrX:1560159-1560279 ( 4) AGGTCTCC 1 chr3L:8178453-8178573 ( 49) CGGTGACC 1 chr2R:17761358-17761478 ( 76) CGGTGACC 1 chr3L:746491-746611 ( 88) TGGGCACC 1 chr2R:17136106-17136226 ( 94) TGGGCACC 1 chr2L:21847473-21847593 ( 94) GGGAAACC 1 chrX:18935113-18935233 ( 113) GCGTGACC 1 chrX:3060235-3060355 ( 19) TCGTCACC 1 chr3R:8349381-8349501 ( 7) TGGAAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.34412 E= 1.3e-069 -62 -311 84 52 -1312 -311 237 -1312 -1312 -1312 240 -1312 -98 -1312 -307 142 -179 138 110 -1312 147 -1312 -1312 -118 -1312 237 -1312 -1312 -1312 237 -1312 -1312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 1.3e-069 0.202247 0.022472 0.337079 0.438202 0.000000 0.022472 0.977528 0.000000 0.000000 0.000000 1.000000 0.000000 0.157303 0.000000 0.022472 0.820225 0.089888 0.505618 0.404494 0.000000 0.865169 0.000000 0.000000 0.134831 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGTSACC MEME-1 regular expression -------------------------------------------------------------------------------- [TGA]GGT[CG]ACC -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CSGGCGGC MEME-2 width = 8 sites = 6 llr = 70 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a3::8::a probability G :5aa2aa: matrix T :2:::::: bits 2.4 * ** *** 2.2 * ** *** 1.9 * ** *** 1.7 * ****** Relative 1.4 * ****** Entropy 1.2 * ****** (16.9 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGGCGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25183550-25183670 111 1.76e-06 TCGTTCGGTT CGGGCGGC AA chr2R:7246539-7246659 104 1.76e-06 CGTGAGGATT CGGGCGGC ATTCATCGG chr3L:16011372-16011492 23 3.57e-06 TGCAACGCCA CCGGCGGC TGAGGCGGAG chr2L:9960517-9960637 16 3.57e-06 CCTTTTCTGA CCGGCGGC AGTCACAAAA chrX:17600230-17600350 1 8.13e-06 . CGGGGGGC CCTAAAAAAG chr3L:16019721-16019841 52 8.13e-06 AAAATCTGTG CTGGCGGC GCGCTTTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25183550-25183670 1.8e-06 110_[+2]_2 chr2R:7246539-7246659 1.8e-06 103_[+2]_9 chr3L:16011372-16011492 3.6e-06 22_[+2]_90 chr2L:9960517-9960637 3.6e-06 15_[+2]_97 chrX:17600230-17600350 8.1e-06 [+2]_112 chr3L:16019721-16019841 8.1e-06 51_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSGGCGGC width=8 seqs=6 chr3R:25183550-25183670 ( 111) CGGGCGGC 1 chr2R:7246539-7246659 ( 104) CGGGCGGC 1 chr3L:16011372-16011492 ( 23) CCGGCGGC 1 chr2L:9960517-9960637 ( 16) CCGGCGGC 1 chrX:17600230-17600350 ( 1) CGGGGGGC 1 chr3L:16019721-16019841 ( 52) CTGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 3.0e+003 -923 236 -923 -923 -923 78 140 -87 -923 -923 240 -923 -923 -923 240 -923 -923 210 -18 -923 -923 -923 240 -923 -923 -923 240 -923 -923 236 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.0e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.500000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGGCGGC MEME-2 regular expression -------------------------------------------------------------------------------- C[GC]GGCGGC -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGGGG MEME-3 width = 8 sites = 2 llr = 26 E-value = 8.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G a:aaaaaa matrix T :a:::::: bits 2.4 * ****** 2.2 * ****** 1.9 * ****** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9913543-9913663 17 2.64e-06 TTATACCCTA GTGGGGGG TAATGGAATT chr3R:20567971-20568091 68 2.64e-06 ACTGGCGACT GTGGGGGG GAGACCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9913543-9913663 2.6e-06 16_[+3]_96 chr3R:20567971-20568091 2.6e-06 67_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGGGG width=8 seqs=2 chr3R:9913543-9913663 ( 17) GTGGGGGG 1 chr3R:20567971-20568091 ( 68) GTGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.5e+003 -765 -765 240 -765 -765 -765 -765 170 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGGG MEME-3 regular expression -------------------------------------------------------------------------------- GTGGGGGG -------------------------------------------------------------------------------- Time 20.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGGCG MEME-4 width = 8 sites = 7 llr = 77 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 11:::39: probability G 99a:a71a matrix T :::a:::: bits 2.4 * * * 2.2 * * * 1.9 *** * * 1.7 ***** ** Relative 1.4 ******** Entropy 1.2 ******** (15.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTGGCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5182437-5182557 86 2.71e-06 CAGTGTAAGT GGGTGGCG GGGTCACCAG chr3L:8178453-8178573 24 2.71e-06 TGTTACCAGA GGGTGGCG AAGTGAAAAG chr3R:4713914-4714034 66 5.48e-06 GAGCCGAGCA GGGTGCCG ATGACGCGGT chr3L:9004837-9004957 4 5.48e-06 GAT GGGTGCCG TGCCCCCCAG chr2L:17249672-17249792 30 1.37e-05 CCGAACGGAT GGGTGGGG AGTTTGGTCG chrX:18935113-18935233 66 1.37e-05 GCAAGTAGGC GCGTGGCG CCTCGGTCAC chr3L:16019721-16019841 21 1.37e-05 gctgcCCCAA CGGTGGCG TTGGTAACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5182437-5182557 2.7e-06 85_[+4]_27 chr3L:8178453-8178573 2.7e-06 23_[+4]_89 chr3R:4713914-4714034 5.5e-06 65_[+4]_47 chr3L:9004837-9004957 5.5e-06 3_[+4]_109 chr2L:17249672-17249792 1.4e-05 29_[+4]_83 chrX:18935113-18935233 1.4e-05 65_[+4]_47 chr3L:16019721-16019841 1.4e-05 20_[+4]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGGCG width=8 seqs=7 chr3L:5182437-5182557 ( 86) GGGTGGCG 1 chr3L:8178453-8178573 ( 24) GGGTGGCG 1 chr3R:4713914-4714034 ( 66) GGGTGCCG 1 chr3L:9004837-9004957 ( 4) GGGTGCCG 1 chr2L:17249672-17249792 ( 30) GGGTGGGG 1 chrX:18935113-18935233 ( 66) GCGTGGCG 1 chr3L:16019721-16019841 ( 21) CGGTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 4.3e+003 -945 -44 218 -945 -945 -44 218 -945 -945 -945 240 -945 -945 -945 -945 171 -945 -945 240 -945 -945 56 192 -945 -945 214 -40 -945 -945 -945 240 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+003 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-4 regular expression -------------------------------------------------------------------------------- GGGTG[GC]CG -------------------------------------------------------------------------------- Time 26.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCACTG MEME-5 width = 8 sites = 5 llr = 59 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::a:a:: probability G a:a::::a matrix T :a::::a: bits 2.4 * ** * * 2.2 * ** * * 1.9 * ** * * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGCACTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14253537-14253657 4 7.40e-06 CGT GTGCACTG AAAACAAAAA chr2R:22570711-22570831 111 7.40e-06 GGGAACTAAA GTGCACTG AA chrX:7491021-7491141 24 7.40e-06 AGTAAGAGTA GTGCACTG GAAAAAACTT chr3R:21944050-21944170 82 7.40e-06 ATTTATATGT GTGCACTG TGCCTGACCA chr2R:11048064-11048184 31 7.40e-06 GCCCACATAC GTGCACTG GGAGAAATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14253537-14253657 7.4e-06 3_[+5]_109 chr2R:22570711-22570831 7.4e-06 110_[+5]_2 chrX:7491021-7491141 7.4e-06 23_[+5]_89 chr3R:21944050-21944170 7.4e-06 81_[+5]_31 chr2R:11048064-11048184 7.4e-06 30_[+5]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCACTG width=8 seqs=5 chr3L:14253537-14253657 ( 4) GTGCACTG 1 chr2R:22570711-22570831 ( 111) GTGCACTG 1 chrX:7491021-7491141 ( 24) GTGCACTG 1 chr3R:21944050-21944170 ( 82) GTGCACTG 1 chr2R:11048064-11048184 ( 31) GTGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.4e+004 -897 -897 240 -897 -897 -897 -897 171 -897 -897 240 -897 -897 236 -897 -897 168 -897 -897 -897 -897 236 -897 -897 -897 -897 -897 171 -897 -897 240 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACTG MEME-5 regular expression -------------------------------------------------------------------------------- GTGCACTG -------------------------------------------------------------------------------- Time 32.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24547588-24547708 1.46e-02 49_[+1(8.07e-05)]_63 chrX:19296201-19296321 2.76e-02 56_[+1(5.35e-05)]_56 chr3R:15553687-15553807 6.63e-03 72_[+1(8.07e-05)]_40 chrX:6328959-6329079 4.12e-03 18_[+3(8.78e-05)]_24_[+1(2.43e-05)]_\ 62 chr2R:19373250-19373370 2.06e-03 54_[+1(4.69e-06)]_58 chr3R:23605436-23605556 3.67e-01 120 chrX:4173491-4173611 7.29e-03 4_[+2(6.60e-05)]_50_[+1(8.07e-05)]_\ 50 chrX:21279593-21279713 1.16e-02 54_[+1(8.07e-05)]_58 chrX:14748671-14748791 3.42e-03 82_[+1(4.69e-06)]_30 chrX:1560159-1560279 9.28e-02 120 chr2R:7063093-7063213 5.83e-02 60_[+1(3.20e-05)]_52 chr2L:4949864-4949984 1.01e-01 41_[+1(2.43e-05)]_71 chr3L:16019721-16019841 2.01e-05 20_[+4(1.37e-05)]_23_[+2(8.13e-06)]_\ 61 chr3L:3429323-3429443 3.51e-02 59_[+1(5.35e-05)]_53 chr2R:17761358-17761478 5.04e-02 120 chr3R:20567971-20568091 1.42e-05 49_[+1(3.20e-05)]_10_[+3(2.64e-06)]_\ 45 chr3R:16203129-16203249 1.40e-01 120 chrX:14653872-14653992 5.03e-03 65_[+1(2.43e-05)]_47 chrX:2355980-2356100 1.85e-01 57_[+1(2.43e-05)]_55 chr3R:28848838-28848958 4.53e-04 68_[+1(2.43e-05)]_44 chr3R:11822424-11822544 2.21e-02 29_[+1(3.95e-05)]_83 chr2L:1007243-1007363 5.82e-03 53_[+1(2.43e-05)]_59 chr2L:19108478-19108598 3.48e-03 74_[+1(5.35e-05)]_38 chr3L:9092829-9092949 5.74e-02 97_[+1(8.07e-05)]_15 chrX:16902356-16902476 3.11e-05 43_[+1(4.69e-06)]_6_[+1(9.55e-05)]_\ 55 chr2L:5310175-5310295 8.00e-03 31_[+1(2.43e-05)]_14_[+1(4.69e-06)]_\ 59 chrX:15143606-15143726 2.36e-04 68_[+1(2.43e-05)]_44 chrX:19387722-19387842 5.46e-03 48_[+1(4.69e-06)]_64 chr3L:9004837-9004957 1.75e-05 3_[+4(5.48e-06)]_22_[+1(3.20e-05)]_\ 79 chr3L:16385298-16385418 7.96e-03 55_[+1(2.43e-05)]_57 chr3L:16975179-16975299 1.46e-02 36_[+1(5.35e-05)]_76 chr3L:8178453-8178573 4.92e-05 23_[+4(2.71e-06)]_89 chrX:14926870-14926990 2.85e-02 55_[+1(4.69e-06)]_57 chr3R:16624533-16624653 8.55e-02 10_[+1(8.07e-05)]_102 chr2R:10111504-10111624 6.52e-03 77_[+1(2.43e-05)]_35 chrX:17816146-17816266 1.40e-01 120 chr3R:8349381-8349501 5.89e-01 120 chr3L:20233783-20233903 7.65e-02 120 chr2R:23378580-23378700 8.46e-03 45_[+1(4.69e-06)]_67 chr2L:12433701-12433821 4.94e-02 120 chr3R:21862652-21862772 1.73e-03 39_[+1(2.43e-05)]_73 chrX:13245111-13245231 1.03e-04 55_[+1(2.43e-05)]_57 chrX:6999243-6999363 2.27e-02 6_[+1(2.43e-05)]_61_[+1(6.57e-05)]_\ 37 chr3R:14024541-14024661 1.63e-02 56_[+1(3.20e-05)]_56 chrX:13254871-13254991 5.60e-03 56_[+1(4.69e-06)]_15_[+1(4.69e-06)]_\ 33 chr3R:25881404-25881524 5.98e-02 52_[+1(2.43e-05)]_60 chr2L:18982096-18982216 4.55e-03 56_[+1(4.69e-06)]_56 chr2R:7586573-7586693 3.20e-02 36_[+1(8.07e-05)]_76 chr2R:7246539-7246659 6.75e-05 38_[+1(8.07e-05)]_57_[+2(1.76e-06)]_\ 9 chr3R:24593945-24594065 9.96e-03 80_[+1(2.43e-05)]_32 chr3R:12638154-12638274 8.04e-01 120 chr2L:9960517-9960637 5.47e-05 15_[+2(3.57e-06)]_67_[+1(8.07e-05)]_\ 14_[+1(4.69e-06)] chr3L:14154779-14154899 1.24e-01 120 chr3R:17382574-17382694 2.29e-02 84_[+1(5.35e-05)]_28 chrX:18684250-18684370 2.35e-02 41_[+1(2.43e-05)]_71 chr3L:4394472-4394592 1.61e-01 81_[+1(2.43e-05)]_31 chrX:339958-340078 1.00e+00 120 chr3R:21065933-21066053 3.01e-01 120 chr3R:15631019-15631139 8.55e-01 120 chr3L:682577-682697 9.50e-04 24_[+1(9.26e-06)]_88 chr3R:18787372-18787492 7.71e-01 120 chr3L:10928895-10929015 1.00e+00 120 chr2L:10364420-10364540 3.78e-03 88_[+1(2.43e-05)]_24 chr3R:8107050-8107170 7.87e-01 120 chr3R:8949414-8949534 3.67e-02 9_[+1(8.07e-05)]_103 chr3R:29313190-29313310 1.93e-01 11_[+1(1.69e-05)]_101 chr3L:6269168-6269288 1.00e+00 120 chr3R:4713914-4714034 1.84e-04 65_[+4(5.48e-06)]_47 chrX:18935113-18935233 9.28e-05 27_[+2(6.60e-05)]_30_[+4(1.37e-05)]_\ 47 chr3R:25183550-25183670 2.32e-07 73_[+1(4.69e-06)]_29_[+2(1.76e-06)]_\ 2 chrX:12014929-12015049 2.02e-01 120 chr2L:7859157-7859277 2.66e-02 60_[+1(2.43e-05)]_9_[+1(2.43e-05)]_\ 35 chr3R:26429759-26429879 9.98e-01 120 chr2R:17136106-17136226 2.35e-01 120 chr2L:16590824-16590944 9.91e-01 120 chrX:18484106-18484226 1.96e-01 92_[+1(2.43e-05)]_20 chrX:18994348-18994468 7.41e-03 84_[+1(4.69e-06)]_28 chr2L:17249672-17249792 1.90e-06 29_[+4(1.37e-05)]_10_[+1(4.69e-06)]_\ 38_[+3(8.78e-05)]_19 chr2L:4797704-4797824 9.86e-01 120 chr2L:1574171-1574291 9.96e-01 120 chr3R:23148603-23148723 3.36e-03 98_[+1(4.69e-06)]_14 chr3L:20953401-20953521 7.25e-01 120 chrX:18270467-18270587 1.95e-03 58_[+1(4.69e-06)]_54 chrX:17187669-17187789 1.00e+00 120 chr2R:6242595-6242715 2.08e-01 120 chr3R:8980045-8980165 1.33e-01 120 chrX:16733786-16733906 3.25e-03 67_[+1(4.69e-06)]_45 chr2R:15529032-15529152 2.41e-02 65_[+1(3.20e-05)]_47 chr2R:24955766-24955886 5.60e-02 80_[+4(8.57e-05)]_32 chr3R:31718350-31718470 1.00e+00 120 chr3R:8810998-8811118 9.52e-01 120 chr3R:8038041-8038161 1.00e+00 120 chrX:18834538-18834658 9.51e-01 120 chr3L:8813586-8813706 7.00e-02 38_[+5(5.74e-05)]_74 chrX:14897779-14897899 9.96e-01 120 chr3R:15495813-15495933 3.38e-02 120 chr2L:7611738-7611858 8.70e-01 120 chr2L:18372222-18372342 9.94e-01 120 chr3R:8349589-8349709 8.00e-01 120 chr3R:29762417-29762537 9.26e-01 120 chr3R:22539043-22539163 9.07e-01 120 chr3R:30022713-30022833 3.57e-03 53_[+1(3.95e-05)]_59 chr2R:18108914-18109034 9.96e-01 120 chr3L:8461336-8461456 9.68e-01 120 chr3R:16238177-16238297 7.59e-01 120 chr2L:21308293-21308413 5.59e-04 55_[+1(3.20e-05)]_57 chr2L:16593979-16594099 9.76e-01 120 chrX:17600230-17600350 2.36e-05 [+2(8.13e-06)]_82_[+1(4.69e-06)]_22 chr3L:21739111-21739231 6.95e-01 120 chr2L:6554763-6554883 7.23e-04 74_[+1(4.69e-06)]_38 chr2R:17845750-17845870 4.18e-01 94_[+5(5.74e-05)]_18 chr3R:8670070-8670190 6.64e-02 120 chr3L:2117148-2117268 9.55e-01 120 chr3L:1458147-1458267 1.00e+00 120 chr3R:29083631-29083751 5.02e-01 120 chrX:9582168-9582288 9.98e-03 5_[+1(8.07e-05)]_107 chr2R:20065657-20065777 2.67e-01 120 chr3R:16234376-16234496 7.43e-03 120 chr2L:20880677-20880797 5.50e-02 120 chr3L:16489964-16490084 9.01e-01 120 chr3R:27199491-27199611 9.96e-01 120 chrX:1826271-1826391 5.95e-01 120 chr3L:6270418-6270538 1.00e+00 120 chr2L:19162904-19163024 7.87e-01 120 chr3L:818501-818621 8.32e-01 120 chrX:11658578-11658698 9.18e-03 120 chr2L:11051851-11051971 5.82e-01 120 chr3R:30461658-30461778 8.22e-01 120 chr2L:14572224-14572344 9.71e-01 120 chr3R:29758500-29758620 9.99e-01 120 chr2L:20913124-20913244 7.24e-01 120 chrX:5301004-5301124 1.22e-01 120 chr3L:13407098-13407218 5.00e-01 120 chr3R:14847342-14847462 2.53e-01 120 chr3R:10708054-10708174 7.87e-04 38_[+1(4.69e-06)]_74 chrX:3867106-3867226 5.19e-01 120 chr3R:14691493-14691613 5.95e-01 120 chr2L:21847473-21847593 3.12e-01 120 chrX:7537922-7538042 2.44e-01 120 chr3L:15641645-15641765 1.88e-01 120 chrX:17726691-17726811 9.54e-01 120 chr3R:21837199-21837319 9.98e-01 120 chrX:3289521-3289641 7.75e-01 120 chr2R:20136805-20136925 3.53e-01 120 chr3R:21896016-21896136 9.97e-01 120 chrX:4175949-4176069 9.14e-01 120 chr2L:18341048-18341168 7.30e-01 120 chr2L:5483262-5483382 7.87e-01 120 chr2L:4348714-4348834 3.65e-01 120 chr3R:11614692-11614812 9.63e-01 120 chr2L:675003-675123 1.00e+00 120 chr4:488844-488964 8.64e-03 51_[+1(3.20e-05)]_61 chrX:21068065-21068185 9.17e-01 120 chr3R:27140067-27140187 9.03e-01 120 chr3L:10785979-10786099 1.00e+00 120 chr3L:6472001-6472121 9.73e-01 120 chr2R:19153452-19153572 1.13e-01 120 chr3L:17506141-17506261 1.00e+00 120 chr2R:14317162-14317282 9.79e-01 120 chr3L:2830140-2830260 1.00e+00 120 chr2R:11048064-11048184 1.75e-02 30_[+5(7.40e-06)]_82 chr3L:5128449-5128569 8.17e-02 120 chr2R:22737921-22738041 9.76e-01 120 chr3L:736124-736244 3.15e-04 83_[+5(7.40e-06)]_29 chr2L:5288318-5288438 7.89e-01 120 chrX:3147099-3147219 1.12e-01 120 chr2L:20802313-20802433 2.47e-01 120 chrX:17678093-17678213 1.00e+00 120 chr2R:8307851-8307971 9.94e-01 120 chr2L:18146765-18146885 9.73e-01 120 chrX:3867309-3867429 9.93e-01 120 chr3L:12030671-12030791 9.93e-01 120 chr3R:14002154-14002274 1.00e+00 120 chr2R:7615622-7615742 9.11e-01 120 chr2R:10559925-10560045 8.95e-01 120 chr3L:10928084-10928204 9.98e-01 120 chr2L:2432926-2433046 4.81e-01 120 chr2R:14345437-14345557 1.00e+00 120 chrX:6059283-6059403 3.94e-01 120 chr2L:6508757-6508877 1.00e+00 120 chrX:10104603-10104723 8.53e-01 120 chr3R:21944050-21944170 6.67e-02 81_[+5(7.40e-06)]_31 chrX:2334700-2334820 3.62e-02 120 chrX:9468410-9468530 9.99e-01 120 chr3L:4619975-4620095 9.98e-01 120 chr2L:18645629-18645749 5.95e-01 120 chr3R:4961569-4961689 9.74e-01 120 chr3R:8847418-8847538 8.81e-02 120 chr2R:19849309-19849429 5.70e-01 120 chr3R:22494626-22494746 1.00e+00 120 chr3L:1064458-1064578 9.53e-01 120 chrX:12662991-12663111 9.11e-01 120 chr3L:8459421-8459541 1.70e-01 7_[+1(9.55e-05)]_105 chrX:12000353-12000473 1.00e+00 120 chr2R:15740731-15740851 3.78e-01 120 chr3R:29778364-29778484 9.60e-01 120 chr3L:4836495-4836615 6.00e-01 120 chr2R:12013424-12013544 4.11e-01 120 chr3L:14451703-14451823 1.00e+00 120 chr2R:14968035-14968155 9.41e-01 120 chr2R:14903829-14903949 5.82e-02 120 chr3R:21899329-21899449 9.80e-02 120 chrX:7491021-7491141 7.93e-03 23_[+5(7.40e-06)]_89 chr3R:14498197-14498317 6.06e-01 120 chr2R:9557611-9557731 9.34e-01 120 chr2R:11033729-11033849 9.16e-01 120 chr3L:531289-531409 8.86e-01 120 chr2L:10989070-10989190 2.59e-01 31_[+1(3.20e-05)]_81 chrX:15453194-15453314 9.65e-01 120 chrX:5923252-5923372 9.78e-01 120 chr3R:21887628-21887748 8.92e-01 120 chr3R:30259704-30259824 1.00e+00 120 chr2R:10600519-10600639 7.61e-01 120 chr3L:16011372-16011492 1.22e-03 22_[+2(3.57e-06)]_90 chr2L:20463499-20463619 9.97e-01 120 chr2R:14081718-14081838 9.93e-01 120 chrX:13278216-13278336 9.89e-01 120 chr3L:746491-746611 9.90e-02 120 chr3L:12410865-12410985 8.05e-01 120 chr3R:27224880-27225000 9.99e-01 120 chr3L:777426-777546 9.99e-01 120 chr3L:16147911-16148031 1.00e+00 120 chrX:779512-779632 9.34e-01 120 chr3R:27186355-27186475 7.27e-01 120 chr3R:13934862-13934982 9.57e-01 120 chr3L:5182437-5182557 1.31e-06 85_[+4(2.71e-06)]_[+1(4.69e-06)]_19 chr3R:30805239-30805359 1.62e-01 43_[+3(8.78e-05)]_69 chr3R:14356794-14356914 4.06e-01 120 chr2L:18628279-18628399 9.97e-01 120 chr3R:23486854-23486974 7.60e-01 120 chr2R:9674784-9674904 1.72e-01 62_[+1(4.43e-05)]_50 chrX:8891161-8891281 9.99e-01 120 chr3L:14622516-14622636 9.34e-01 120 chr2L:21314024-21314144 9.99e-01 120 chr3R:11338427-11338547 7.69e-03 98_[+4(8.57e-05)]_14 chrX:3060235-3060355 5.68e-01 120 chrX:3722343-3722463 9.92e-01 120 chr2L:7104705-7104825 5.35e-01 120 chr3L:4545818-4545938 4.48e-01 120 chrX:9892995-9893115 1.00e+00 120 chr3R:9913543-9913663 7.23e-03 16_[+3(2.64e-06)]_96 chr2L:7503881-7504001 9.99e-01 120 chr3R:30800394-30800514 2.14e-01 120 chrX:3380243-3380363 1.54e-01 120 chrX:3411973-3412093 1.50e-01 120 chr3L:824604-824724 1.00e+00 120 chr2R:22570711-22570831 9.44e-02 110_[+5(7.40e-06)]_2 chr3L:14253537-14253657 1.11e-01 3_[+5(7.40e-06)]_109 chr2R:18583372-18583492 4.99e-02 120 chr2R:14482545-14482665 8.45e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************