******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8290.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:17470303-17470423 1.0000 120 chrX:20502933-20503053 1.0000 120 chr2R:15218294-15218414 1.0000 120 chr2R:8137731-8137851 1.0000 120 chrX:5329751-5329871 1.0000 120 chrX:18090491-18090611 1.0000 120 chr2R:23911972-23912092 1.0000 120 chr2L:480627-480747 1.0000 120 chr2R:11968873-11968993 1.0000 120 chr3R:16180600-16180720 1.0000 120 chr3L:2244144-2244264 1.0000 120 chrX:4936228-4936348 1.0000 120 chrX:3570494-3570614 1.0000 120 chrX:18815090-18815210 1.0000 120 chr3L:15816895-15817015 1.0000 120 chr3L:12834216-12834336 1.0000 120 chrX:5847651-5847771 1.0000 120 chr3R:30806582-30806702 1.0000 120 chrX:11578980-11579100 1.0000 120 chr2L:14024518-14024638 1.0000 120 chr2R:10808868-10808988 1.0000 120 chr2R:14360188-14360308 1.0000 120 chr3R:8524435-8524555 1.0000 120 chrX:12667126-12667246 1.0000 120 chrX:15602582-15602702 1.0000 120 chr3L:698925-699045 1.0000 120 chr2L:19412110-19412230 1.0000 120 chrX:7488364-7488484 1.0000 120 chr2R:10400150-10400270 1.0000 120 chr3L:699791-699911 1.0000 120 chr2R:24187520-24187640 1.0000 120 chr3R:12728411-12728531 1.0000 120 chr3L:11358807-11358927 1.0000 120 chr2L:12025616-12025736 1.0000 120 chrX:6310571-6310691 1.0000 120 chrX:5866243-5866363 1.0000 120 chrX:14955287-14955407 1.0000 120 chr3L:710685-710805 1.0000 120 chrX:4038893-4039013 1.0000 120 chrX:1260495-1260615 1.0000 120 chr3L:22276824-22276944 1.0000 120 chr2R:20667248-20667368 1.0000 120 chrX:19696967-19697087 1.0000 120 chr4:835002-835122 1.0000 120 chrX:9871750-9871870 1.0000 120 chr2R:10807853-10807973 1.0000 120 chr2L:897265-897385 1.0000 120 chrX:17737141-17737261 1.0000 120 chr3R:16249490-16249610 1.0000 120 chr3L:11285769-11285889 1.0000 120 chr2L:17388184-17388304 1.0000 120 chrX:21044575-21044695 1.0000 120 chr2L:2528233-2528353 1.0000 120 chr3R:16256262-16256382 1.0000 120 chr2R:15480293-15480413 1.0000 120 chr3L:18088162-18088282 1.0000 120 chr2R:10013345-10013465 1.0000 120 chr3L:11346652-11346772 1.0000 120 chr3R:15476132-15476252 1.0000 120 chr3R:25047593-25047713 1.0000 120 chrX:2050714-2050834 1.0000 120 chr2R:23740391-23740511 1.0000 120 chrX:6037808-6037928 1.0000 120 chr3R:30200243-30200363 1.0000 120 chrX:19315482-19315602 1.0000 120 chr3R:7505022-7505142 1.0000 120 chr3R:17966147-17966267 1.0000 120 chr3L:8853034-8853154 1.0000 120 chrX:23091957-23092077 1.0000 120 chr3L:1188960-1189080 1.0000 120 chrX:1286259-1286379 1.0000 120 chr2L:4248431-4248551 1.0000 120 chr2R:23747305-23747425 1.0000 120 chr2R:24560993-24561113 1.0000 120 chr3L:14789839-14789959 1.0000 120 chr3L:9020610-9020730 1.0000 120 chr3L:7726433-7726553 1.0000 120 chr3L:17430610-17430730 1.0000 120 chr2L:13290909-13291029 1.0000 120 chr3R:31086485-31086605 1.0000 120 chr3R:16209495-16209615 1.0000 120 chr2L:18864248-18864368 1.0000 120 chr2R:6871327-6871447 1.0000 120 chr3R:21836765-21836885 1.0000 120 chr2R:13909059-13909179 1.0000 120 chr3R:27651846-27651966 1.0000 120 chr3R:27988285-27988405 1.0000 120 chr2L:892597-892717 1.0000 120 chr2L:5224871-5224991 1.0000 120 chrX:948281-948401 1.0000 120 chr3L:630739-630859 1.0000 120 chrX:6308923-6309043 1.0000 120 chrX:19168171-19168291 1.0000 120 chr3L:11349022-11349142 1.0000 120 chr2R:24532029-24532149 1.0000 120 chr2R:8150790-8150910 1.0000 120 chr2R:23614835-23614955 1.0000 120 chr3R:18738217-18738337 1.0000 120 chr3R:17371211-17371331 1.0000 120 chr3R:16305232-16305352 1.0000 120 chr3R:16260480-16260600 1.0000 120 chrX:2161098-2161218 1.0000 120 chr2L:6561631-6561751 1.0000 120 chr3R:16252108-16252228 1.0000 120 chr3R:9258894-9259014 1.0000 120 chrX:4322451-4322571 1.0000 120 chr3L:339203-339323 1.0000 120 chrX:13805660-13805780 1.0000 120 chr2R:21076867-21076987 1.0000 120 chr3L:12835617-12835737 1.0000 120 chr3R:16212212-16212332 1.0000 120 chrX:3157411-3157531 1.0000 120 chr3R:22503739-22503859 1.0000 120 chrX:15860032-15860152 1.0000 120 chr2L:2723229-2723349 1.0000 120 chr3R:6908205-6908325 1.0000 120 chr3R:26557097-26557217 1.0000 120 chr2L:1186217-1186337 1.0000 120 chr2L:3469989-3470109 1.0000 120 chr3R:31901690-31901810 1.0000 120 chrX:515851-515971 1.0000 120 chr3R:14308062-14308182 1.0000 120 chr4:68731-68851 1.0000 120 chrX:4931149-4931269 1.0000 120 chr3R:9057144-9057264 1.0000 120 chr2L:14395230-14395350 1.0000 120 chr3R:20558215-20558335 1.0000 120 chrX:19028729-19028849 1.0000 120 chr2R:16017697-16017817 1.0000 120 chr3L:18179931-18180051 1.0000 120 chrX:16671214-16671334 1.0000 120 chr3R:4130426-4130546 1.0000 120 chrX:12672426-12672546 1.0000 120 chr3L:11442075-11442195 1.0000 120 chr3L:11293446-11293566 1.0000 120 chr3R:20949962-20950082 1.0000 120 chr2L:9158460-9158580 1.0000 120 chrX:19306719-19306839 1.0000 120 chr3L:11323598-11323718 1.0000 120 chr2L:5001010-5001130 1.0000 120 chr2R:11970125-11970245 1.0000 120 chrX:19243527-19243647 1.0000 120 chr2R:17098575-17098695 1.0000 120 chr3L:14674159-14674279 1.0000 120 chr3R:16211350-16211470 1.0000 120 chrX:12241206-12241326 1.0000 120 chr3R:17777067-17777187 1.0000 120 chr2L:1118925-1119045 1.0000 120 chr2R:22737956-22738076 1.0000 120 chr3R:21163371-21163491 1.0000 120 chr3R:20263075-20263195 1.0000 120 chr3L:24028389-24028509 1.0000 120 chr3R:27426871-27426991 1.0000 120 chrX:17723027-17723147 1.0000 120 chr2R:10192345-10192465 1.0000 120 chr3L:779102-779222 1.0000 120 chr2R:15754421-15754541 1.0000 120 chr3L:11550512-11550632 1.0000 120 chr2R:18605480-18605600 1.0000 120 chr2L:14613288-14613408 1.0000 120 chrX:3282090-3282210 1.0000 120 chr2R:23617743-23617863 1.0000 120 chr3L:27279226-27279346 1.0000 120 chrX:5604304-5604424 1.0000 120 chr3R:24589113-24589233 1.0000 120 chr3R:13364296-13364416 1.0000 120 chr2R:20668038-20668158 1.0000 120 chr3L:8683119-8683239 1.0000 120 chrX:11349934-11350054 1.0000 120 chr2R:21073710-21073830 1.0000 120 chr2R:23656698-23656818 1.0000 120 chr2R:25183114-25183234 1.0000 120 chr3L:751858-751978 1.0000 120 chr3R:14575907-14576027 1.0000 120 chr2L:9509791-9509911 1.0000 120 chr2L:20148520-20148640 1.0000 120 chr2L:19756814-19756934 1.0000 120 chr2R:10551929-10552049 1.0000 120 chrX:17820373-17820493 1.0000 120 chrX:15802988-15803108 1.0000 120 chr2R:12670158-12670278 1.0000 120 chr3L:780872-780992 1.0000 120 chrX:11350496-11350616 1.0000 120 chrX:10745452-10745572 1.0000 120 chr3L:11419393-11419513 1.0000 120 chr2L:1909855-1909975 1.0000 120 chr3L:4413869-4413989 1.0000 120 chr2L:10298483-10298603 1.0000 120 chr3L:15141296-15141416 1.0000 120 chr3R:16656285-16656405 1.0000 120 chrX:15857810-15857930 1.0000 120 chr2R:23869605-23869725 1.0000 120 chrX:13088165-13088285 1.0000 120 chrX:529823-529943 1.0000 120 chr2R:23601850-23601970 1.0000 120 chr3R:5086597-5086717 1.0000 120 chr2R:7024974-7025094 1.0000 120 chr2R:17272609-17272729 1.0000 120 chrX:5992284-5992404 1.0000 120 chr2L:740189-740309 1.0000 120 chr3R:27905845-27905965 1.0000 120 chr2L:7790459-7790579 1.0000 120 chrX:19453265-19453385 1.0000 120 chr2L:5907011-5907131 1.0000 120 chr3R:5107045-5107165 1.0000 120 chr4:210157-210277 1.0000 120 chrX:18837148-18837268 1.0000 120 chrX:18516142-18516262 1.0000 120 chr3L:16310104-16310224 1.0000 120 chrX:966962-967082 1.0000 120 chr2R:22200006-22200126 1.0000 120 chr2L:3108426-3108546 1.0000 120 chr3R:27151565-27151685 1.0000 120 chr3L:3320161-3320281 1.0000 120 chrX:19498155-19498275 1.0000 120 chrX:14826043-14826163 1.0000 120 chr2L:17260721-17260841 1.0000 120 chr2L:9943613-9943733 1.0000 120 chr2L:6967577-6967697 1.0000 120 chr3R:31636612-31636732 1.0000 120 chr3R:18740018-18740138 1.0000 120 chrX:7286752-7286872 1.0000 120 chr3R:12451521-12451641 1.0000 120 chr2R:23882384-23882504 1.0000 120 chr3L:27136393-27136513 1.0000 120 chr2L:13512259-13512379 1.0000 120 chr2L:9887963-9888083 1.0000 120 chr4:558719-558839 1.0000 120 chr3L:19939212-19939332 1.0000 120 chr3L:3932847-3932967 1.0000 120 chr2R:10122577-10122697 1.0000 120 chr3R:26535171-26535291 1.0000 120 chr3R:19153592-19153712 1.0000 120 chrX:1772745-1772865 1.0000 120 chr3L:15591336-15591456 1.0000 120 chr2R:18440371-18440491 1.0000 120 chrX:8493620-8493740 1.0000 120 chr2L:16679958-16680078 1.0000 120 chr3R:9872247-9872367 1.0000 120 chrX:2136825-2136945 1.0000 120 chr2R:23865325-23865445 1.0000 120 chrX:8273860-8273980 1.0000 120 chr2R:22197256-22197376 1.0000 120 chr2R:24186582-24186702 1.0000 120 chr3R:16234486-16234606 1.0000 120 chrX:21315945-21316065 1.0000 120 chr3L:6352364-6352484 1.0000 120 chr2R:7489905-7490025 1.0000 120 chr2L:7984145-7984265 1.0000 120 chr2R:11712146-11712266 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8290/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8290.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.282 C 0.224 G 0.224 T 0.27 Background letter frequencies (from file dataset with add-one prior applied): A 0.282 C 0.224 G 0.224 T 0.27 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 29 llr = 267 E-value = 7.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9:::a:8 pos.-specific C 3::a:::: probability G ::::a::2 matrix T 71a:::a1 bits 2.2 ** 1.9 *** * 1.7 ***** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ******* (13.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23865325-23865445 66 2.21e-05 AATCCAGCGC TATCGATA ACATTCGGCC chr2L:6967577-6967697 70 2.21e-05 TATCGGTGTG TATCGATA CACGATAGGT chr4:210157-210277 93 2.21e-05 GATCAAACAT TATCGATA GTGTTTCTAT chrX:15857810-15857930 40 2.21e-05 GATTAAAATC TATCGATA AATAATCACT chrX:15802988-15803108 10 2.21e-05 CAGTCTAGA TATCGATA AGTATTATCG chr2R:20668038-20668158 56 2.21e-05 TTACTCACAC TATCGATA CACCAACGTG chr2L:3469989-3470109 18 2.21e-05 AGCGTAAAAT TATCGATA TCACATCGGA chrX:15860032-15860152 37 2.21e-05 GTATCAATGC TATCGATA TCCGCATACA chr3R:9258894-9259014 30 2.21e-05 AAAATGGTTT TATCGATA TGTCGATACA chr2R:24560993-24561113 91 2.21e-05 GAGTTGAGTC TATCGATA GGGCGATAGG chr3R:25047593-25047713 91 2.21e-05 TTTCGCCGAC TATCGATA GACGGGCTCA chr2L:14024518-14024638 100 2.21e-05 AGGGCTTGCA TATCGATA TAGCCCATGT chr3R:30806582-30806702 13 2.21e-05 TATGTTCACA TATCGATA GACCGATATC chr3L:15816895-15817015 59 2.21e-05 ATTAAACATC TATCGATA GTATCGATTA chr2R:11968873-11968993 40 2.21e-05 TTTTTGTCGC TATCGATA GTGCTGTTCA chrX:21315945-21316065 77 4.05e-05 TGCTCGATGG CATCGATA TTCCGAATGC chr2L:16679958-16680078 48 4.05e-05 AACGGATAAC CATCGATA TCAGCGATTT chrX:4931149-4931269 95 4.05e-05 CGATGCCAAA CATCGATA TTTTCAAAAA chrX:18090491-18090611 27 4.05e-05 TCGATGACAT CATCGATA TCATCGATCT chr3L:7726433-7726553 44 5.81e-05 ATTTCGATAC TATCGATG CTCGTAGAGA chr2R:23747305-23747425 103 7.93e-05 ACAAATGTAT TTTCGATA GTCATCGGCC chrX:19315482-19315602 26 7.93e-05 TTAGACACCT TTTCGATA AAACTGAAGT chrX:4936228-4936348 23 7.93e-05 CATCGGTGTT TTTCGATA AATCATCGTT chr3R:9057144-9057264 107 9.39e-05 TCGCTCTTGT CATCGATG CTCTCC chrX:6037808-6037928 61 9.39e-05 ATCGAGTTGG CATCGATG TTTCTCCACC chrX:14955287-14955407 53 9.39e-05 CGCTGCACAC CATCGATG ATTGTCAATG chr2R:15218294-15218414 80 9.39e-05 TCCATGCTAG CATCGATG TTTCTCCATC chr2R:11970125-11970245 26 1.15e-04 GTCTCACATA TATCGATT GCCTGGAACC chr3L:14789839-14789959 24 1.15e-04 GGCGCAGTAC TATCGATT GTCCCTGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23865325-23865445 2.2e-05 65_[+1]_47 chr2L:6967577-6967697 2.2e-05 69_[+1]_43 chr4:210157-210277 2.2e-05 92_[+1]_20 chrX:15857810-15857930 2.2e-05 39_[+1]_73 chrX:15802988-15803108 2.2e-05 9_[+1]_103 chr2R:20668038-20668158 2.2e-05 55_[+1]_57 chr2L:3469989-3470109 2.2e-05 17_[+1]_95 chrX:15860032-15860152 2.2e-05 36_[+1]_76 chr3R:9258894-9259014 2.2e-05 29_[+1]_83 chr2R:24560993-24561113 2.2e-05 90_[+1]_22 chr3R:25047593-25047713 2.2e-05 90_[+1]_22 chr2L:14024518-14024638 2.2e-05 99_[+1]_13 chr3R:30806582-30806702 2.2e-05 12_[+1]_100 chr3L:15816895-15817015 2.2e-05 58_[+1]_54 chr2R:11968873-11968993 2.2e-05 39_[+1]_73 chrX:21315945-21316065 4.1e-05 76_[+1]_36 chr2L:16679958-16680078 4.1e-05 47_[+1]_65 chrX:4931149-4931269 4.1e-05 94_[+1]_18 chrX:18090491-18090611 4.1e-05 26_[+1]_86 chr3L:7726433-7726553 5.8e-05 43_[+1]_69 chr2R:23747305-23747425 7.9e-05 102_[+1]_10 chrX:19315482-19315602 7.9e-05 25_[+1]_87 chrX:4936228-4936348 7.9e-05 22_[+1]_90 chr3R:9057144-9057264 9.4e-05 106_[+1]_6 chrX:6037808-6037928 9.4e-05 60_[+1]_52 chrX:14955287-14955407 9.4e-05 52_[+1]_60 chr2R:15218294-15218414 9.4e-05 79_[+1]_33 chr2R:11970125-11970245 0.00012 25_[+1]_87 chr3L:14789839-14789959 0.00012 23_[+1]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=29 chr2R:23865325-23865445 ( 66) TATCGATA 1 chr2L:6967577-6967697 ( 70) TATCGATA 1 chr4:210157-210277 ( 93) TATCGATA 1 chrX:15857810-15857930 ( 40) TATCGATA 1 chrX:15802988-15803108 ( 10) TATCGATA 1 chr2R:20668038-20668158 ( 56) TATCGATA 1 chr2L:3469989-3470109 ( 18) TATCGATA 1 chrX:15860032-15860152 ( 37) TATCGATA 1 chr3R:9258894-9259014 ( 30) TATCGATA 1 chr2R:24560993-24561113 ( 91) TATCGATA 1 chr3R:25047593-25047713 ( 91) TATCGATA 1 chr2L:14024518-14024638 ( 100) TATCGATA 1 chr3R:30806582-30806702 ( 13) TATCGATA 1 chr3L:15816895-15817015 ( 59) TATCGATA 1 chr2R:11968873-11968993 ( 40) TATCGATA 1 chrX:21315945-21316065 ( 77) CATCGATA 1 chr2L:16679958-16680078 ( 48) CATCGATA 1 chrX:4931149-4931269 ( 95) CATCGATA 1 chrX:18090491-18090611 ( 27) CATCGATA 1 chr3L:7726433-7726553 ( 44) TATCGATG 1 chr2R:23747305-23747425 ( 103) TTTCGATA 1 chrX:19315482-19315602 ( 26) TTTCGATA 1 chrX:4936228-4936348 ( 23) TTTCGATA 1 chr3R:9057144-9057264 ( 107) CATCGATG 1 chrX:6037808-6037928 ( 61) CATCGATG 1 chrX:14955287-14955407 ( 53) CATCGATG 1 chr2R:15218294-15218414 ( 80) CATCGATG 1 chr2R:11970125-11970245 ( 26) TATCGATT 1 chr3L:14789839-14789959 ( 24) TATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 7.7e-003 -1150 30 -1150 142 167 -1150 -1150 -138 -1150 -1150 -1150 189 -1150 216 -1150 -1150 -1150 -1150 216 -1150 183 -1150 -1150 -1150 -1150 -1150 -1150 189 143 -1150 -38 -197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 7.7e-003 0.000000 0.275862 0.000000 0.724138 0.896552 0.000000 0.000000 0.103448 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.758621 0.000000 0.172414 0.068966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]ATCGATA -------------------------------------------------------------------------------- Time 7.73 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTGCTTG MEME-2 width = 8 sites = 16 llr = 153 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :a:19::1 probability G :::9:1:8 matrix T ::a:19a1 bits 2.2 * 1.9 ** * 1.7 **** * 1.5 ***** * Relative 1.3 ******** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTGCTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3108426-3108546 19 1.40e-05 GGCAACATTC ACTGCTTG GCCACACTGC chr2L:740189-740309 33 1.40e-05 ACAGAATCAG ACTGCTTG CCAGGTTAAG chr2L:10298483-10298603 93 1.40e-05 AGTACAGAAG ACTGCTTG AGTAATTCCA chr3R:6908205-6908325 19 1.40e-05 ATCTGCGTGA ACTGCTTG CGCGTCTGCT chr3R:16260480-16260600 107 1.40e-05 AGCAGTTTAC ACTGCTTG TCTAGT chr3R:27651846-27651966 66 1.40e-05 CCAAACCAGC ACTGCTTG CACGTAACAG chr3R:31086485-31086605 38 1.40e-05 CCTCGCGTGC ACTGCTTG CTCGAGCAGA chr3L:18088162-18088282 81 1.40e-05 TCATGTGCAT ACTGCTTG TTGCACGAAA chr3L:751858-751978 14 2.56e-05 TGGGGGAAAA ACTGCGTG ATTTCAACGT chr3R:16212212-16212332 69 2.56e-05 TGCCAAGTCA ACTGCGTG TAGTACTGCC chrX:18516142-18516262 5 3.95e-05 ATGC ACTGCTTC TGTGTGCGTG chrX:15860032-15860152 60 3.95e-05 ATACATCGAT ACTGCTTC CTTGCACCCT chr2L:19756814-19756934 82 5.64e-05 ACAACAACAA ACTGTTTG TGGAGCGCAC chrX:2161098-2161218 35 5.64e-05 TATGAATTCA ACTGTTTG GATTCCGCAG chr2R:24560993-24561113 44 7.04e-05 CGTAAAATGA ACTCCTTG TAATTTTCGC chr3L:14674159-14674279 46 8.72e-05 ATACATGAAC ACTGCTTT GTGGATGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3108426-3108546 1.4e-05 18_[+2]_94 chr2L:740189-740309 1.4e-05 32_[+2]_80 chr2L:10298483-10298603 1.4e-05 92_[+2]_20 chr3R:6908205-6908325 1.4e-05 18_[+2]_94 chr3R:16260480-16260600 1.4e-05 106_[+2]_6 chr3R:27651846-27651966 1.4e-05 65_[+2]_47 chr3R:31086485-31086605 1.4e-05 37_[+2]_75 chr3L:18088162-18088282 1.4e-05 80_[+2]_32 chr3L:751858-751978 2.6e-05 13_[+2]_99 chr3R:16212212-16212332 2.6e-05 68_[+2]_44 chrX:18516142-18516262 4e-05 4_[+2]_108 chrX:15860032-15860152 4e-05 59_[+2]_53 chr2L:19756814-19756934 5.6e-05 81_[+2]_31 chrX:2161098-2161218 5.6e-05 34_[+2]_78 chr2R:24560993-24561113 7e-05 43_[+2]_69 chr3L:14674159-14674279 8.7e-05 45_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGCTTG width=8 seqs=16 chr2L:3108426-3108546 ( 19) ACTGCTTG 1 chr2L:740189-740309 ( 33) ACTGCTTG 1 chr2L:10298483-10298603 ( 93) ACTGCTTG 1 chr3R:6908205-6908325 ( 19) ACTGCTTG 1 chr3R:16260480-16260600 ( 107) ACTGCTTG 1 chr3R:27651846-27651966 ( 66) ACTGCTTG 1 chr3R:31086485-31086605 ( 38) ACTGCTTG 1 chr3L:18088162-18088282 ( 81) ACTGCTTG 1 chr3L:751858-751978 ( 14) ACTGCGTG 1 chr3R:16212212-16212332 ( 69) ACTGCGTG 1 chrX:18516142-18516262 ( 5) ACTGCTTC 1 chrX:15860032-15860152 ( 60) ACTGCTTC 1 chr2L:19756814-19756934 ( 82) ACTGTTTG 1 chrX:2161098-2161218 ( 35) ACTGTTTG 1 chr2R:24560993-24561113 ( 44) ACTCCTTG 1 chr3L:14674159-14674279 ( 46) ACTGCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 2.0e+004 183 -1064 -1064 -1064 -1064 216 -1064 -1064 -1064 -1064 -1064 189 -1064 -184 207 -1064 -1064 196 -1064 -111 -1064 -1064 -84 169 -1064 -1064 -1064 189 -1064 -84 186 -211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.0e+004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.812500 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-2 regular expression -------------------------------------------------------------------------------- ACTGCTTG -------------------------------------------------------------------------------- Time 14.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTGTTTG MEME-3 width = 8 sites = 12 llr = 123 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :6:a:::a matrix T a4a:aaa: bits 2.2 * * 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTTTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15591336-15591456 51 1.61e-05 AAGCAGTGGA TGTGTTTG GTTTTATAGT chr3R:5107045-5107165 15 1.61e-05 tatgtatatc tgtGTTTG CCGGCTGAAA chrX:17820373-17820493 17 1.61e-05 GTATGCTTCT TGTGTTTG CAATCGAACA chr2R:20668038-20668158 93 1.61e-05 TGTGCGCGGA TGTGTTTG TTGTGTTCAC chr2R:18605480-18605600 57 1.61e-05 GCCAAACAGC TGTGTTTG CCCATGTTTG chr2R:23747305-23747425 21 1.61e-05 CCGAGCTGCC TGTGTTTG CACACTTGCT chr2R:23740391-23740511 64 1.61e-05 TTGAATATTT TGTGTTTG TATTTGTCTG chrX:19498155-19498275 18 3.56e-05 GCTATGCTGT TTTGTTTG ATTTTTTGGT chr3R:20558215-20558335 55 3.56e-05 ACCGCGATGA TTTGTTTG GGTTGGCAAC chr2L:14395230-14395350 4 3.56e-05 TGC TTTGTTTG TGATTTAGTT chr3R:9057144-9057264 88 3.56e-05 TAAATAGATT TTTGTTTG CTCGCTCTTG chrX:15602582-15602702 4 3.56e-05 TCA TTTGTTTG CCAATCAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15591336-15591456 1.6e-05 50_[+3]_62 chr3R:5107045-5107165 1.6e-05 14_[+3]_98 chrX:17820373-17820493 1.6e-05 16_[+3]_96 chr2R:20668038-20668158 1.6e-05 92_[+3]_20 chr2R:18605480-18605600 1.6e-05 56_[+3]_56 chr2R:23747305-23747425 1.6e-05 20_[+3]_92 chr2R:23740391-23740511 1.6e-05 63_[+3]_49 chrX:19498155-19498275 3.6e-05 17_[+3]_95 chr3R:20558215-20558335 3.6e-05 54_[+3]_58 chr2L:14395230-14395350 3.6e-05 3_[+3]_109 chr3R:9057144-9057264 3.6e-05 87_[+3]_25 chrX:15602582-15602702 3.6e-05 3_[+3]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTGTTTG width=8 seqs=12 chr3L:15591336-15591456 ( 51) TGTGTTTG 1 chr3R:5107045-5107165 ( 15) TGTGTTTG 1 chrX:17820373-17820493 ( 17) TGTGTTTG 1 chr2R:20668038-20668158 ( 93) TGTGTTTG 1 chr2R:18605480-18605600 ( 57) TGTGTTTG 1 chr2R:23747305-23747425 ( 21) TGTGTTTG 1 chr2R:23740391-23740511 ( 64) TGTGTTTG 1 chrX:19498155-19498275 ( 18) TTTGTTTG 1 chr3R:20558215-20558335 ( 55) TTTGTTTG 1 chr2L:14395230-14395350 ( 4) TTTGTTTG 1 chr3R:9057144-9057264 ( 88) TTTGTTTG 1 chrX:15602582-15602702 ( 4) TTTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.6e+003 -1023 -1023 -1023 189 -1023 -1023 138 62 -1023 -1023 -1023 189 -1023 -1023 216 -1023 -1023 -1023 -1023 189 -1023 -1023 -1023 189 -1023 -1023 -1023 189 -1023 -1023 216 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-3 regular expression -------------------------------------------------------------------------------- T[GT]TGTTTG -------------------------------------------------------------------------------- Time 20.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKGGTGG MEME-4 width = 8 sites = 10 llr = 105 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G aa5aa2aa matrix T ::5::8:: bits 2.2 ** ** ** 1.9 ** ** ** 1.7 ** ** ** 1.5 ** ** ** Relative 1.3 ** ***** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGTGG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8273860-8273980 39 7.64e-06 CGCGCATTCC GGGGGTGG ACGGGGTGCC chr3L:780872-780992 73 7.64e-06 CACGGCGGAG GGGGGTGG AGGTGGGGCA chrX:3282090-3282210 25 7.64e-06 TTGCGGGGGG GGGGGTGG TTATTAACCA chr3L:11349022-11349142 82 7.64e-06 AAAAGGGGAG GGGGGTGG GTGTGGTGAT chr2L:5907011-5907131 73 1.68e-05 CACTGGCTGC GGTGGTGG AAAATGTGAA chrX:4931149-4931269 69 1.68e-05 ATCGACTAGA GGTGGTGG AGAAACATCG chr3L:1188960-1189080 10 1.68e-05 TCCACACAT GGTGGTGG AACAGGGAAA chr3R:16256262-16256382 8 1.68e-05 TGGCTGG GGTGGTGG AGAGTGGATG chr3R:21836765-21836885 5 2.32e-05 GAGG GGGGGGGG GTTGGCTTTG chr3R:14575907-14576027 21 3.08e-05 TTCTCGGCTC GGTGGGGG CTGCCACCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8273860-8273980 7.6e-06 38_[+4]_74 chr3L:780872-780992 7.6e-06 72_[+4]_40 chrX:3282090-3282210 7.6e-06 24_[+4]_88 chr3L:11349022-11349142 7.6e-06 81_[+4]_31 chr2L:5907011-5907131 1.7e-05 72_[+4]_40 chrX:4931149-4931269 1.7e-05 68_[+4]_44 chr3L:1188960-1189080 1.7e-05 9_[+4]_103 chr3R:16256262-16256382 1.7e-05 7_[+4]_105 chr3R:21836765-21836885 2.3e-05 4_[+4]_108 chr3R:14575907-14576027 3.1e-05 20_[+4]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGTGG width=8 seqs=10 chrX:8273860-8273980 ( 39) GGGGGTGG 1 chr3L:780872-780992 ( 73) GGGGGTGG 1 chrX:3282090-3282210 ( 25) GGGGGTGG 1 chr3L:11349022-11349142 ( 82) GGGGGTGG 1 chr2L:5907011-5907131 ( 73) GGTGGTGG 1 chrX:4931149-4931269 ( 69) GGTGGTGG 1 chr3L:1188960-1189080 ( 10) GGTGGTGG 1 chr3R:16256262-16256382 ( 8) GGTGGTGG 1 chr3R:21836765-21836885 ( 5) GGGGGGGG 1 chr3R:14575907-14576027 ( 21) GGTGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.0e+004 -997 -997 216 -997 -997 -997 216 -997 -997 -997 116 89 -997 -997 216 -997 -997 -997 216 -997 -997 -997 -16 156 -997 -997 216 -997 -997 -997 216 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGTGG MEME-4 regular expression -------------------------------------------------------------------------------- GG[GT]GG[TG]GG -------------------------------------------------------------------------------- Time 27.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGGCC MEME-5 width = 8 sites = 6 llr = 67 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2:::::aa probability G 8:a:aa:: matrix T :a:a:::: bits 2.2 * **** 1.9 ******* 1.7 ******* 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7984145-7984265 64 9.21e-06 CGGGGGTGTA GTGTGGCC AGTTCTTCTA chr2R:23865325-23865445 16 9.21e-06 TGGCCGACCA GTGTGGCC AGCGTCGCGC chr4:210157-210277 111 9.21e-06 GTGTTTCTAT GTGTGGCC CA chrX:11578980-11579100 33 9.21e-06 GCAGTCATTA GTGTGGCC AAAACTCGAA chr3L:2244144-2244264 92 9.21e-06 GAACTGTGCA GTGTGGCC GTATTTTTTG chrX:11350496-11350616 16 1.84e-05 TAATCGGTGT CTGTGGCC GATGGGGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7984145-7984265 9.2e-06 63_[+5]_49 chr2R:23865325-23865445 9.2e-06 15_[+5]_97 chr4:210157-210277 9.2e-06 110_[+5]_2 chrX:11578980-11579100 9.2e-06 32_[+5]_80 chr3L:2244144-2244264 9.2e-06 91_[+5]_21 chrX:11350496-11350616 1.8e-05 15_[+5]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGGCC width=8 seqs=6 chr2L:7984145-7984265 ( 64) GTGTGGCC 1 chr2R:23865325-23865445 ( 16) GTGTGGCC 1 chr4:210157-210277 ( 111) GTGTGGCC 1 chrX:11578980-11579100 ( 33) GTGTGGCC 1 chr3L:2244144-2244264 ( 92) GTGTGGCC 1 chrX:11350496-11350616 ( 16) CTGTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 1.3e+005 -923 -43 189 -923 -923 -923 -923 189 -923 -923 216 -923 -923 -923 -923 189 -923 -923 216 -923 -923 -923 216 -923 -923 216 -923 -923 -923 216 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.3e+005 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGGCC MEME-5 regular expression -------------------------------------------------------------------------------- GTGTGGCC -------------------------------------------------------------------------------- Time 33.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17470303-17470423 7.65e-01 120 chrX:20502933-20503053 7.50e-01 120 chr2R:15218294-15218414 3.69e-01 12_[+1(9.39e-05)]_12_[+1(9.39e-05)]_\ 39_[+1(9.39e-05)]_33 chr2R:8137731-8137851 1.38e-01 120 chrX:5329751-5329871 2.58e-01 120 chrX:18090491-18090611 7.16e-02 14_[+1(9.39e-05)]_4_[+1(4.05e-05)]_\ 27_[+1(9.39e-05)]_13_[+1(9.39e-05)]_30 chr2R:23911972-23912092 1.75e-01 120 chr2L:480627-480747 9.74e-01 120 chr2R:11968873-11968993 1.45e-01 19_[+1(5.81e-05)]_12_[+1(2.21e-05)]_\ 73 chr3R:16180600-16180720 4.00e-01 120 chr3L:2244144-2244264 1.76e-02 91_[+5(9.21e-06)]_21 chrX:4936228-4936348 2.99e-01 22_[+1(7.93e-05)]_90 chrX:3570494-3570614 5.63e-01 120 chrX:18815090-18815210 8.59e-01 120 chr3L:15816895-15817015 2.13e-01 39_[+1(2.21e-05)]_11_[+1(2.21e-05)]_\ 54 chr3L:12834216-12834336 9.05e-01 120 chrX:5847651-5847771 5.10e-01 120 chr3R:30806582-30806702 5.47e-02 12_[+1(2.21e-05)]_6_[+1(2.21e-05)]_\ 51_[+1(2.21e-05)]_27 chrX:11578980-11579100 8.80e-02 32_[+5(9.21e-06)]_80 chr2L:14024518-14024638 9.82e-02 99_[+1(2.21e-05)]_13 chr2R:10808868-10808988 9.68e-01 120 chr2R:14360188-14360308 1.51e-01 120 chr3R:8524435-8524555 7.87e-01 120 chrX:12667126-12667246 6.18e-01 120 chrX:15602582-15602702 6.02e-02 3_[+3(3.56e-05)]_109 chr3L:698925-699045 4.71e-01 120 chr2L:19412110-19412230 2.32e-01 120 chrX:7488364-7488484 5.09e-01 120 chr2R:10400150-10400270 3.56e-01 120 chr3L:699791-699911 9.99e-01 120 chr2R:24187520-24187640 9.56e-01 120 chr3R:12728411-12728531 9.77e-02 120 chr3L:11358807-11358927 2.38e-01 120 chr2L:12025616-12025736 7.33e-01 120 chrX:6310571-6310691 7.18e-01 120 chrX:5866243-5866363 3.08e-01 120 chrX:14955287-14955407 6.35e-02 52_[+1(9.39e-05)]_37_[+1(9.39e-05)]_\ 15 chr3L:710685-710805 3.19e-01 120 chrX:4038893-4039013 8.16e-01 120 chrX:1260495-1260615 8.59e-01 120 chr3L:22276824-22276944 5.75e-01 120 chr2R:20667248-20667368 2.32e-01 120 chrX:19696967-19697087 3.12e-01 120 chr4:835002-835122 2.87e-01 120 chrX:9871750-9871870 2.24e-01 120 chr2R:10807853-10807973 4.46e-01 120 chr2L:897265-897385 4.83e-01 120 chrX:17737141-17737261 3.01e-01 120 chr3R:16249490-16249610 6.31e-01 120 chr3L:11285769-11285889 9.10e-01 120 chr2L:17388184-17388304 6.43e-03 120 chrX:21044575-21044695 8.36e-01 120 chr2L:2528233-2528353 7.99e-01 120 chr3R:16256262-16256382 3.76e-02 7_[+4(1.68e-05)]_105 chr2R:15480293-15480413 8.61e-01 120 chr3L:18088162-18088282 1.29e-01 28_[+2(1.40e-05)]_13_[+2(8.72e-05)]_\ 23_[+2(1.40e-05)]_32 chr2R:10013345-10013465 5.92e-01 120 chr3L:11346652-11346772 9.83e-01 120 chr3R:15476132-15476252 1.22e-01 120 chr3R:25047593-25047713 6.26e-02 90_[+1(2.21e-05)]_22 chrX:2050714-2050834 3.64e-02 120 chr2R:23740391-23740511 3.37e-02 63_[+3(1.61e-05)]_49 chrX:6037808-6037928 2.17e-01 14_[+1(9.39e-05)]_18_[+1(9.39e-05)]_\ 12_[+1(9.39e-05)]_52 chr3R:30200243-30200363 8.15e-01 120 chrX:19315482-19315602 1.35e-01 25_[+1(7.93e-05)]_87 chr3R:7505022-7505142 4.81e-01 120 chr3R:17966147-17966267 6.02e-01 120 chr3L:8853034-8853154 9.95e-01 120 chrX:23091957-23092077 1.82e-01 120 chr3L:1188960-1189080 6.62e-03 9_[+4(1.68e-05)]_103 chrX:1286259-1286379 9.98e-01 120 chr2L:4248431-4248551 7.43e-01 120 chr2R:23747305-23747425 5.57e-03 20_[+3(1.61e-05)]_74_[+1(7.93e-05)]_\ 10 chr2R:24560993-24561113 1.19e-02 43_[+2(7.04e-05)]_39_[+1(2.21e-05)]_\ 22 chr3L:14789839-14789959 2.88e-01 120 chr3L:9020610-9020730 3.75e-01 120 chr3L:7726433-7726553 2.65e-01 34_[+1(7.93e-05)]_1_[+1(5.81e-05)]_\ 69 chr3L:17430610-17430730 8.61e-01 120 chr2L:13290909-13291029 6.17e-01 120 chr3R:31086485-31086605 1.73e-01 37_[+2(1.40e-05)]_45_[+2(8.72e-05)]_\ 22 chr3R:16209495-16209615 9.90e-01 120 chr2L:18864248-18864368 8.70e-02 120 chr2R:6871327-6871447 5.74e-01 120 chr3R:21836765-21836885 7.07e-03 2_[+4(2.32e-05)]_110 chr2R:13909059-13909179 7.68e-01 120 chr3R:27651846-27651966 7.90e-02 65_[+2(1.40e-05)]_47 chr3R:27988285-27988405 8.15e-01 120 chr2L:892597-892717 4.43e-01 120 chr2L:5224871-5224991 5.85e-01 120 chrX:948281-948401 7.13e-01 120 chr3L:630739-630859 9.54e-01 120 chrX:6308923-6309043 6.19e-01 120 chrX:19168171-19168291 5.07e-01 120 chr3L:11349022-11349142 2.74e-02 81_[+4(7.64e-06)]_31 chr2R:24532029-24532149 1.16e-01 120 chr2R:8150790-8150910 5.00e-01 120 chr2R:23614835-23614955 4.92e-01 120 chr3R:18738217-18738337 4.32e-01 120 chr3R:17371211-17371331 9.98e-01 120 chr3R:16305232-16305352 2.19e-01 120 chr3R:16260480-16260600 1.41e-02 106_[+2(1.40e-05)]_6 chrX:2161098-2161218 5.73e-02 34_[+2(5.64e-05)]_78 chr2L:6561631-6561751 6.46e-01 120 chr3R:16252108-16252228 1.38e-02 120 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36 chr3L:6352364-6352484 9.96e-01 120 chr2R:7489905-7490025 2.65e-01 120 chr2L:7984145-7984265 7.77e-04 63_[+5(9.21e-06)]_49 chr2R:11712146-11712266 2.91e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n02.farnam.hpc.yale.internal ********************************************************************************