******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8281.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:13471890-13472010 1.0000 120 chr3L:15634507-15634627 1.0000 120 chr3R:30781255-30781375 1.0000 120 chr3L:10788725-10788845 1.0000 120 chrX:19287923-19288043 1.0000 120 chr3R:23336652-23336772 1.0000 120 chr3L:16886308-16886428 1.0000 120 chrX:9291409-9291529 1.0000 120 chr2L:8423209-8423329 1.0000 120 chrX:17494067-17494187 1.0000 120 chr3R:16504680-16504800 1.0000 120 chr3R:29518062-29518182 1.0000 120 chr3L:18769921-18770041 1.0000 120 chrX:15128019-15128139 1.0000 120 chr3L:19579485-19579605 1.0000 120 chrX:3404837-3404957 1.0000 120 chr2R:9953591-9953711 1.0000 120 chr3L:4375814-4375934 1.0000 120 chr2L:19785309-19785429 1.0000 120 chr3L:10646051-10646171 1.0000 120 chrX:16698311-16698431 1.0000 120 chr3R:21023257-21023377 1.0000 120 chr3L:20857748-20857868 1.0000 120 chrX:1110324-1110444 1.0000 120 chr2R:23584448-23584568 1.0000 120 chr2R:19606181-19606301 1.0000 120 chrX:16136059-16136179 1.0000 120 chr2L:20352339-20352459 1.0000 120 chr2R:6980716-6980836 1.0000 120 chr3R:29508690-29508810 1.0000 120 chr2R:14088482-14088602 1.0000 120 chrX:9740408-9740528 1.0000 120 chr3R:12290977-12291097 1.0000 120 chr2R:12766205-12766325 1.0000 120 chrX:3151558-3151678 1.0000 120 chr3L:3454569-3454689 1.0000 120 chr3L:13658839-13658959 1.0000 120 chrX:4474512-4474632 1.0000 120 chr2L:18641226-18641346 1.0000 120 chrX:20478813-20478933 1.0000 120 chr3R:22288444-22288564 1.0000 120 chr2L:8721146-8721266 1.0000 120 chr3R:23503650-23503770 1.0000 120 chr3L:14821272-14821392 1.0000 120 chr2L:14316843-14316963 1.0000 120 chr3L:7874646-7874766 1.0000 120 chr3R:31548905-31549025 1.0000 120 chr2L:14628905-14629025 1.0000 120 chr3L:1394581-1394701 1.0000 120 chr2L:7807702-7807822 1.0000 120 chr2R:20181743-20181863 1.0000 120 chr2R:16442535-16442655 1.0000 120 chr2R:12771740-12771860 1.0000 120 chr2R:10453738-10453858 1.0000 120 chr3R:8449082-8449202 1.0000 120 chr3R:8224865-8224985 1.0000 120 chr3R:7259729-7259849 1.0000 120 chr3R:11316806-11316926 1.0000 120 chr3R:15457525-15457645 1.0000 120 chrX:9708227-9708347 1.0000 120 chr3L:9115793-9115913 1.0000 120 chrX:2969178-2969298 1.0000 120 chrX:9478895-9479015 1.0000 120 chr3R:29899774-29899894 1.0000 120 chr2L:8098070-8098190 1.0000 120 chr3R:17359509-17359629 1.0000 120 chr3L:14062841-14062961 1.0000 120 chr2L:1547999-1548119 1.0000 120 chr2L:19089034-19089154 1.0000 120 chr3L:19076115-19076235 1.0000 120 chr3L:6451711-6451831 1.0000 120 chr3R:11467951-11468071 1.0000 120 chr3R:18088377-18088497 1.0000 120 chr2L:17763312-17763432 1.0000 120 chr2L:5348730-5348850 1.0000 120 chr3R:5027736-5027856 1.0000 120 chr3L:21819636-21819756 1.0000 120 chrX:10867831-10867951 1.0000 120 chr3R:17550124-17550244 1.0000 120 chrX:19875768-19875888 1.0000 120 chr3R:20595536-20595656 1.0000 120 chr2R:19929231-19929351 1.0000 120 chrX:7541252-7541372 1.0000 120 chrX:15630101-15630221 1.0000 120 chr2R:21574326-21574446 1.0000 120 chr2R:14426588-14426708 1.0000 120 chr2L:18914968-18915088 1.0000 120 chr2R:15474898-15475018 1.0000 120 chr3R:13417206-13417326 1.0000 120 chrX:7462228-7462348 1.0000 120 chr2L:20806758-20806878 1.0000 120 chr2L:18526107-18526227 1.0000 120 chrX:5487520-5487640 1.0000 120 chr3L:22416247-22416367 1.0000 120 chr3R:7926493-7926613 1.0000 120 chr2R:12112398-12112518 1.0000 120 chr2L:3897668-3897788 1.0000 120 chr3L:21887748-21887868 1.0000 120 chr3R:8280099-8280219 1.0000 120 chr3R:19323677-19323797 1.0000 120 chr3L:15896586-15896706 1.0000 120 chr2L:16442722-16442842 1.0000 120 chr2R:20184794-20184914 1.0000 120 chrX:6628458-6628578 1.0000 120 chr3L:4448688-4448808 1.0000 120 chr3L:8002572-8002692 1.0000 120 chr3L:6456865-6456985 1.0000 120 chr3L:3921605-3921725 1.0000 120 chr3L:8362738-8362858 1.0000 120 chr3L:8529057-8529177 1.0000 120 chr3R:7866949-7867069 1.0000 120 chr2R:16967372-16967492 1.0000 120 chr3R:21947551-21947671 1.0000 120 chr3R:10299298-10299418 1.0000 120 chr2R:14927713-14927833 1.0000 120 chr3R:27371668-27371788 1.0000 120 chrX:9064181-9064301 1.0000 120 chr2L:19258532-19258652 1.0000 120 chr3L:12227388-12227508 1.0000 120 chr3L:3744026-3744146 1.0000 120 chr2L:15024526-15024646 1.0000 120 chr2R:8044549-8044669 1.0000 120 chrX:7583874-7583994 1.0000 120 chr2L:2664021-2664141 1.0000 120 chr3L:13035449-13035569 1.0000 120 chrX:7776274-7776394 1.0000 120 chr2L:4356750-4356870 1.0000 120 chr2L:14631459-14631579 1.0000 120 chr2L:13148506-13148626 1.0000 120 chrX:9074149-9074269 1.0000 120 chr2R:11034341-11034461 1.0000 120 chr3L:12641367-12641487 1.0000 120 chr3R:5310690-5310810 1.0000 120 chr2L:8892465-8892585 1.0000 120 chrX:4330929-4331049 1.0000 120 chr2R:23158357-23158477 1.0000 120 chrX:8862822-8862942 1.0000 120 chr3L:12699595-12699715 1.0000 120 chrX:5189761-5189881 1.0000 120 chr2R:11519525-11519645 1.0000 120 chrX:19023151-19023271 1.0000 120 chr3R:15177731-15177851 1.0000 120 chr3L:14712632-14712752 1.0000 120 chr3L:21607929-21608049 1.0000 120 chr3R:13087127-13087247 1.0000 120 chrX:12233327-12233447 1.0000 120 chr3R:24888522-24888642 1.0000 120 chr3L:22671471-22671591 1.0000 120 chrX:19395340-19395460 1.0000 120 chr2R:21852217-21852337 1.0000 120 chr3R:23833999-23834119 1.0000 120 chrX:5057517-5057637 1.0000 120 chr3R:5888037-5888157 1.0000 120 chr3R:27400114-27400234 1.0000 120 chr3R:20603383-20603503 1.0000 120 chr3R:14174192-14174312 1.0000 120 chrX:8276221-8276341 1.0000 120 chrX:9734911-9735031 1.0000 120 chr3L:12195276-12195396 1.0000 120 chr3L:10205939-10206059 1.0000 120 chr3L:9252543-9252663 1.0000 120 chr2L:1432306-1432426 1.0000 120 chrX:19537446-19537566 1.0000 120 chr3L:12260794-12260914 1.0000 120 chr3R:18875292-18875412 1.0000 120 chrX:7526922-7527042 1.0000 120 chr3L:11469276-11469396 1.0000 120 chr3L:18561739-18561859 1.0000 120 chr2R:23590764-23590884 1.0000 120 chr3R:20477684-20477804 1.0000 120 chrX:5975250-5975370 1.0000 120 chrX:9991431-9991551 1.0000 120 chr2L:1471419-1471539 1.0000 120 chrX:18662206-18662326 1.0000 120 chr2L:7955943-7956063 1.0000 120 chr3R:24018547-24018667 1.0000 120 chr3L:10780370-10780490 1.0000 120 chr3L:16028472-16028592 1.0000 120 chrX:751547-751667 1.0000 120 chr3L:13240306-13240426 1.0000 120 chr2L:2915852-2915972 1.0000 120 chr3L:22352790-22352910 1.0000 120 chrX:3105617-3105737 1.0000 120 chr3L:21857729-21857849 1.0000 120 chr3R:21980261-21980381 1.0000 120 chr3R:13847589-13847709 1.0000 120 chr3L:13863960-13864080 1.0000 120 chr2L:18867433-18867553 1.0000 120 chr3L:19335529-19335649 1.0000 120 chr2R:23162601-23162721 1.0000 120 chrX:8083555-8083675 1.0000 120 chrX:11651712-11651832 1.0000 120 chr3L:4438975-4439095 1.0000 120 chr2L:17241680-17241800 1.0000 120 chrX:7623146-7623266 1.0000 120 chrX:3005095-3005215 1.0000 120 chrX:12846699-12846819 1.0000 120 chr3L:8550251-8550371 1.0000 120 chr3L:12772893-12773013 1.0000 120 chr3R:25636238-25636358 1.0000 120 chrX:17370880-17371000 1.0000 120 chr2R:21605795-21605915 1.0000 120 chr2L:3642238-3642358 1.0000 120 chrX:5114664-5114784 1.0000 120 chr2L:6340796-6340916 1.0000 120 chr2R:12483411-12483531 1.0000 120 chr3L:14077923-14078043 1.0000 120 chr3R:15469338-15469458 1.0000 120 chr3R:19452929-19453049 1.0000 120 chrX:21002058-21002178 1.0000 120 chrX:8888309-8888429 1.0000 120 chr2R:19130293-19130413 1.0000 120 chr3R:13568480-13568600 1.0000 120 chrX:9744972-9745092 1.0000 120 chrX:14531086-14531206 1.0000 120 chr2R:14559619-14559739 1.0000 120 chr2R:15560188-15560308 1.0000 120 chrX:5124660-5124780 1.0000 120 chrX:11527188-11527308 1.0000 120 chr3L:6577592-6577712 1.0000 120 chr3R:21631927-21632047 1.0000 120 chr2R:8755804-8755924 1.0000 120 chr2L:15763554-15763674 1.0000 120 chr3R:13726031-13726151 1.0000 120 chr2R:13916575-13916695 1.0000 120 chr3L:19239914-19240034 1.0000 120 chr3R:4962005-4962125 1.0000 120 chrX:1250223-1250343 1.0000 120 chr2R:19154352-19154472 1.0000 120 chr2R:17251737-17251857 1.0000 120 chr3R:21941023-21941143 1.0000 120 chr2R:23255222-23255342 1.0000 120 chrX:17780973-17781093 1.0000 120 chrX:1715845-1715965 1.0000 120 chr2R:11071738-11071858 1.0000 120 chr2L:10499198-10499318 1.0000 120 chr2L:13095944-13096064 1.0000 120 chrX:14948209-14948329 1.0000 120 chr3R:22889441-22889561 1.0000 120 chrX:19408389-19408509 1.0000 120 chr2R:22541356-22541476 1.0000 120 chr2L:11069039-11069159 1.0000 120 chr2L:6176502-6176622 1.0000 120 chr3L:3452443-3452563 1.0000 120 chrX:10008685-10008805 1.0000 120 chr2R:20524746-20524866 1.0000 120 chr2R:10771466-10771586 1.0000 120 chr3L:1357010-1357130 1.0000 120 chr3R:25126937-25127057 1.0000 120 chr2R:22523732-22523852 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8281/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8281.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.237 G 0.236 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.237 G 0.236 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGACTGA MEME-1 width = 8 sites = 92 llr = 826 E-value = 1.2e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:1a3::a pos.-specific C 8:::6::: probability G ::9:::a: matrix T 1a::2a:: bits 2.1 * 1.9 * *** 1.7 *** *** 1.5 *** *** Relative 1.2 *** *** Entropy 1.0 **** *** (13.0 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGACTGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10008685-10008805 64 1.51e-05 gactgactga ctgactga ctgactgact chrX:5124660-5124780 84 1.51e-05 gaatgagcgg ctgactga gcgagtgaat chr3R:13568480-13568600 73 1.51e-05 gagtgaatga ctgactga AGTTGGCCTG chr3R:19452929-19453049 88 1.51e-05 gactgcctga ctgactga cCCATAAATG chrX:12846699-12846819 12 1.51e-05 AACTGGTtga ctgactga ctgactgact chrX:8083555-8083675 40 1.51e-05 aactgactaa ctgactga ttgactgact chr3L:19335529-19335649 32 1.51e-05 gattggcaga ctgactga gtggccaact chr3R:13847589-13847709 49 1.51e-05 GCCAGACTGC Ctgactga atgcccaaat chr3R:21980261-21980381 72 1.51e-05 gactaactga ctgactga ctgaGTGAGT chr3L:10780370-10780490 93 1.51e-05 gactggctga ctgactga ctgcttgact chr3R:24018547-24018667 39 1.51e-05 CAGGCCctga ctgactga ctaactgact chr2L:7955943-7956063 60 1.51e-05 gactagctga ctgactga acgaatgaat chrX:18662206-18662326 67 1.51e-05 TATtgagtga ctgactga ctgggcgact chr3L:9252543-9252663 21 1.51e-05 gaatgactaa ctgactga ctgactaact chrX:9734911-9735031 51 1.51e-05 gactgagtga ctgactga ctggctgaca chrX:5057517-5057637 82 1.51e-05 AACTGTTCAa ctgactga ctgacgtact chr3R:15177731-15177851 68 1.51e-05 gattgactga ctgactga ctgattgatG chr3R:5310690-5310810 60 1.51e-05 GAGTGATTGC CTGACTGA TGGAATTCGT chr2R:11034341-11034461 99 1.51e-05 gactgactga ctgactga ctgGCGACTG chr2L:13148506-13148626 87 1.51e-05 gactgaatga ctgactga ctctggatga chrX:7583874-7583994 90 1.51e-05 gactgaatat ctgactga ttTTGGCTTA chr2L:16442722-16442842 43 1.51e-05 TGctgatgga ctgactga acgaatgact chr3L:15896586-15896706 77 1.51e-05 gcctggctga ctgactga gggaatgact chr3L:21887748-21887868 88 1.51e-05 gtccaactga ctgactga ctagctacct chrX:5487520-5487640 51 1.51e-05 gactaactga ctgactga ctgactggct chr2R:19929231-19929351 54 1.51e-05 gagcgactga ctgactga cttgctggct chr3L:19076115-19076235 80 1.51e-05 TACGGGCTCA CTGACTGA GTGGGTAGTT chrX:9478895-9479015 16 1.51e-05 gacggactga ctgactga atgaatgagt chr2R:16442535-16442655 59 1.51e-05 gattgactga ctgactga ctgactggct chr2R:20181743-20181863 18 1.51e-05 ctttggctga ctgactga aagcgaatgc chr3L:7874646-7874766 69 1.51e-05 gactgattga ctgactga caaagtgagc chr3L:14821272-14821392 32 1.51e-05 GCCCAAATGC ctgactga ctgcttgact chr3R:23503650-23503770 43 1.51e-05 gactgactga ctgactga ctgacggact chr3R:12290977-12291097 88 1.51e-05 gactaagtga ctgactga ctgCCAATGG chr2R:14088482-14088602 40 1.51e-05 gtccgactga ctgactga cagacagaca chr3R:29508690-29508810 28 1.51e-05 CCCGGCGACA CTGACTGa ctgacgaact chr2R:19606181-19606301 105 1.51e-05 ggtggatggG CTGACTGA CTTGGGCC chrX:1110324-1110444 57 1.51e-05 gaatgaccga ctgactga atgaGTAAAC chr3L:18769921-18770041 12 1.51e-05 tggacaccga ctgactga ctgactgacg chrX:17494067-17494187 65 1.51e-05 aactgactaa ctgactga ctgaaggact chr3L:16886308-16886428 50 1.51e-05 CATtgactaa ctgactga atgaccgact chr3L:15634507-15634627 72 1.51e-05 aactgacaga ctgactga atgacggaAC chr2R:20524746-20524866 66 3.21e-05 gcccgaatga ctgaatga atagatTGAG chr3L:3452443-3452563 62 3.21e-05 GATTGCCAAA CTGAATGA ATGAATGAAC chr3R:22889441-22889561 42 3.21e-05 TGGGGGtgaa ctgaatga gtgactgaat chr2R:11071738-11071858 40 3.21e-05 CAATGAATGG CTGAATGA ATGCTTGCCG chr3L:10205939-10206059 39 3.21e-05 GAATGAATGA CTGAATGA CGGAGCGATT chrX:4330929-4331049 55 3.21e-05 AATGGGCAAA CTGAATGA CTGAATGGTG chr3L:12641367-12641487 50 3.21e-05 gaatgaatga ctgaatga gtaagtgaat chrX:7776274-7776394 23 3.21e-05 gaaggactaa ctgaatga atgaatgagg chr2L:15024526-15024646 53 3.21e-05 gaatgaataa ctgaatga atgaatCATT chr2R:14927713-14927833 49 3.21e-05 AACTGACAAA CTGAATGA GTGACGGGTT chr2L:20806758-20806878 33 3.21e-05 TGCCGAGCga ctgaatga atgaatgact chr3R:5027736-5027856 36 3.21e-05 AAGTGAATGT CTGAATGA CCAACTGAAT chr3R:18088377-18088497 76 3.21e-05 gagtatgtga ctgaatga gtgactgaCA chr3R:16504680-16504800 43 3.21e-05 gagtgaatgg ctgaatga cgacatgaat chrX:9991431-9991551 77 4.86e-05 GTGTGATTGC CTGATTGA CAGCAAAACA chr3L:13035449-13035569 23 4.86e-05 TCACCGCCAC CTGATTGA CCAAACCAAT chr2R:8044549-8044669 81 4.86e-05 gactgattga ctgattga ctgTCGTGTC chr3R:21023257-21023377 66 4.86e-05 ACTCGGTTGA CTGATTGA TGGCTTGGCG chrX:16698311-16698431 42 4.86e-05 gattgatgga ctgattga tGGTGCGGCA chr2L:8423209-8423329 2 4.86e-05 C CTGATTGA GGGAAACTTT chrX:11527188-11527308 23 6.56e-05 gaatgaatga atgactga ctggctggct chr3R:23336652-23336772 34 6.56e-05 gagtgagtga atgactga catattgcct chr3L:8529057-8529177 58 8.21e-05 ACTTGACCAA TTGACTGA GTTTGCTGGA chr2R:15560188-15560308 90 9.92e-05 TATGTATTGA CTAACTGA TACAAACAGT chr3L:18561739-18561859 28 9.92e-05 GACTAACGGA CTAACTGA GTGAATGACG chr3R:24888522-24888642 82 9.92e-05 GGCCAAGTGA CTAACTGA GGGACTGGGA chr2R:12112398-12112518 73 9.92e-05 GGCGGATTGG CTAACTGA ATGGATGCTG chrX:15630101-15630221 86 9.92e-05 gacttagcga ctaactga ccagctggct chrX:1715845-1715965 70 1.18e-04 ggatgggtgg atgaatga ctggatggat chr3L:14077923-14078043 72 1.18e-04 ATAATATTGA ATGAATGA CAAACTGAGA chrX:751547-751667 52 1.18e-04 AAGTGATTGA ATGAATGA TGGATCCACC chr2L:1432306-1432426 21 1.18e-04 GCCCgaatga atgaatga gacgaatgat chrX:2969178-2969298 20 1.18e-04 gaataaatga atgaatga atgaatgaat chr2R:12771740-12771860 40 1.18e-04 TGAGCTCCAg atgaatga atggacggat chr3R:22288444-22288564 62 1.18e-04 gaatgaacga atgaatga atggggactt chr3L:3454569-3454689 16 1.18e-04 GGCTCAAATC ATGAATGA ATCTACAGCC chrX:3404837-3404957 91 1.18e-04 GAGTGAGTAA ATGAATGA AGCCCACATG chr3R:21631927-21632047 57 1.37e-04 CGTTGGGGGA TTGAATGA GTGAGCGAAT chr2L:18641226-18641346 51 1.56e-04 AATTGGCGGA ATGATTGA TGGATGGCCG chr2L:14631459-14631579 15 1.70e-04 AGCTGCCCCG CTgtctga cagtcagtca chr3L:20857748-20857868 70 1.70e-04 TGCTGTCATT CTGTCTGA CATGCATGAT chr2R:13471890-13472010 99 1.70e-04 GCCCGTCTGT CTGTCTGA TTTCATTTTA chr2R:22541356-22541476 31 1.88e-04 TACATTTAAG TTGATTGA TGGATTGAAA chr3L:13863960-13864080 64 1.88e-04 ACAACATCTA TTGATTGA TTTATTGATC chr2L:1471419-1471539 46 1.88e-04 CACGgattga ttgattga tcgactgatg chr2R:16967372-16967492 111 1.88e-04 GCCCACACAA TTGATTGA CT chr3L:4448688-4448808 47 1.88e-04 CAATGTACTa ttgattga tggattgatt chr2L:18914968-18915088 54 1.88e-04 gctggaaggg ttgattga cgCACTTTCA chrX:9708227-9708347 41 1.88e-04 GGCGTGCGCA TTGATTGA ATGCTCAATT chr2R:12483411-12483531 34 2.26e-04 ATCGCACCCG CTAATTGA TCCATCTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10008685-10008805 1.5e-05 63_[+1]_49 chrX:5124660-5124780 1.5e-05 83_[+1]_29 chr3R:13568480-13568600 1.5e-05 72_[+1]_40 chr3R:19452929-19453049 1.5e-05 87_[+1]_25 chrX:12846699-12846819 1.5e-05 11_[+1]_101 chrX:8083555-8083675 1.5e-05 39_[+1]_73 chr3L:19335529-19335649 1.5e-05 31_[+1]_81 chr3R:13847589-13847709 1.5e-05 48_[+1]_64 chr3R:21980261-21980381 1.5e-05 71_[+1]_41 chr3L:10780370-10780490 1.5e-05 92_[+1]_20 chr3R:24018547-24018667 1.5e-05 38_[+1]_74 chr2L:7955943-7956063 1.5e-05 59_[+1]_53 chrX:18662206-18662326 1.5e-05 66_[+1]_46 chr3L:9252543-9252663 1.5e-05 20_[+1]_92 chrX:9734911-9735031 1.5e-05 50_[+1]_62 chrX:5057517-5057637 1.5e-05 81_[+1]_31 chr3R:15177731-15177851 1.5e-05 67_[+1]_45 chr3R:5310690-5310810 1.5e-05 59_[+1]_53 chr2R:11034341-11034461 1.5e-05 98_[+1]_14 chr2L:13148506-13148626 1.5e-05 86_[+1]_26 chrX:7583874-7583994 1.5e-05 89_[+1]_23 chr2L:16442722-16442842 1.5e-05 42_[+1]_70 chr3L:15896586-15896706 1.5e-05 76_[+1]_36 chr3L:21887748-21887868 1.5e-05 87_[+1]_25 chrX:5487520-5487640 1.5e-05 50_[+1]_62 chr2R:19929231-19929351 1.5e-05 53_[+1]_59 chr3L:19076115-19076235 1.5e-05 79_[+1]_33 chrX:9478895-9479015 1.5e-05 15_[+1]_97 chr2R:16442535-16442655 1.5e-05 58_[+1]_54 chr2R:20181743-20181863 1.5e-05 17_[+1]_95 chr3L:7874646-7874766 1.5e-05 68_[+1]_44 chr3L:14821272-14821392 1.5e-05 31_[+1]_81 chr3R:23503650-23503770 1.5e-05 42_[+1]_70 chr3R:12290977-12291097 1.5e-05 87_[+1]_25 chr2R:14088482-14088602 1.5e-05 39_[+1]_73 chr3R:29508690-29508810 1.5e-05 27_[+1]_85 chr2R:19606181-19606301 1.5e-05 104_[+1]_8 chrX:1110324-1110444 1.5e-05 56_[+1]_56 chr3L:18769921-18770041 1.5e-05 11_[+1]_101 chrX:17494067-17494187 1.5e-05 64_[+1]_48 chr3L:16886308-16886428 1.5e-05 49_[+1]_63 chr3L:15634507-15634627 1.5e-05 71_[+1]_41 chr2R:20524746-20524866 3.2e-05 65_[+1]_47 chr3L:3452443-3452563 3.2e-05 61_[+1]_51 chr3R:22889441-22889561 3.2e-05 41_[+1]_71 chr2R:11071738-11071858 3.2e-05 39_[+1]_73 chr3L:10205939-10206059 3.2e-05 38_[+1]_74 chrX:4330929-4331049 3.2e-05 54_[+1]_58 chr3L:12641367-12641487 3.2e-05 49_[+1]_63 chrX:7776274-7776394 3.2e-05 22_[+1]_90 chr2L:15024526-15024646 3.2e-05 52_[+1]_60 chr2R:14927713-14927833 3.2e-05 48_[+1]_64 chr2L:20806758-20806878 3.2e-05 32_[+1]_80 chr3R:5027736-5027856 3.2e-05 35_[+1]_77 chr3R:18088377-18088497 3.2e-05 75_[+1]_37 chr3R:16504680-16504800 3.2e-05 42_[+1]_70 chrX:9991431-9991551 4.9e-05 76_[+1]_36 chr3L:13035449-13035569 4.9e-05 22_[+1]_90 chr2R:8044549-8044669 4.9e-05 80_[+1]_32 chr3R:21023257-21023377 4.9e-05 65_[+1]_47 chrX:16698311-16698431 4.9e-05 41_[+1]_71 chr2L:8423209-8423329 4.9e-05 1_[+1]_111 chrX:11527188-11527308 6.6e-05 22_[+1]_90 chr3R:23336652-23336772 6.6e-05 33_[+1]_79 chr3L:8529057-8529177 8.2e-05 57_[+1]_55 chr2R:15560188-15560308 9.9e-05 89_[+1]_23 chr3L:18561739-18561859 9.9e-05 27_[+1]_85 chr3R:24888522-24888642 9.9e-05 81_[+1]_31 chr2R:12112398-12112518 9.9e-05 72_[+1]_40 chrX:15630101-15630221 9.9e-05 85_[+1]_27 chrX:1715845-1715965 0.00012 69_[+1]_43 chr3L:14077923-14078043 0.00012 71_[+1]_41 chrX:751547-751667 0.00012 51_[+1]_61 chr2L:1432306-1432426 0.00012 20_[+1]_92 chrX:2969178-2969298 0.00012 19_[+1]_93 chr2R:12771740-12771860 0.00012 39_[+1]_73 chr3R:22288444-22288564 0.00012 61_[+1]_51 chr3L:3454569-3454689 0.00012 15_[+1]_97 chrX:3404837-3404957 0.00012 90_[+1]_22 chr3R:21631927-21632047 0.00014 56_[+1]_56 chr2L:18641226-18641346 0.00016 50_[+1]_62 chr2L:14631459-14631579 0.00017 14_[+1]_98 chr3L:20857748-20857868 0.00017 69_[+1]_43 chr2R:13471890-13472010 0.00017 98_[+1]_14 chr2R:22541356-22541476 0.00019 30_[+1]_82 chr3L:13863960-13864080 0.00019 63_[+1]_49 chr2L:1471419-1471539 0.00019 45_[+1]_67 chr2R:16967372-16967492 0.00019 110_[+1]_2 chr3L:4448688-4448808 0.00019 46_[+1]_66 chr2L:18914968-18915088 0.00019 53_[+1]_59 chrX:9708227-9708347 0.00019 40_[+1]_72 chr2R:12483411-12483531 0.00023 33_[+1]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGACTGA width=8 seqs=92 chrX:10008685-10008805 ( 64) CTGACTGA 1 chrX:5124660-5124780 ( 84) CTGACTGA 1 chr3R:13568480-13568600 ( 73) CTGACTGA 1 chr3R:19452929-19453049 ( 88) CTGACTGA 1 chrX:12846699-12846819 ( 12) CTGACTGA 1 chrX:8083555-8083675 ( 40) CTGACTGA 1 chr3L:19335529-19335649 ( 32) CTGACTGA 1 chr3R:13847589-13847709 ( 49) CTGACTGA 1 chr3R:21980261-21980381 ( 72) CTGACTGA 1 chr3L:10780370-10780490 ( 93) CTGACTGA 1 chr3R:24018547-24018667 ( 39) CTGACTGA 1 chr2L:7955943-7956063 ( 60) CTGACTGA 1 chrX:18662206-18662326 ( 67) CTGACTGA 1 chr3L:9252543-9252663 ( 21) CTGACTGA 1 chrX:9734911-9735031 ( 51) CTGACTGA 1 chrX:5057517-5057637 ( 82) CTGACTGA 1 chr3R:15177731-15177851 ( 68) CTGACTGA 1 chr3R:5310690-5310810 ( 60) CTGACTGA 1 chr2R:11034341-11034461 ( 99) CTGACTGA 1 chr2L:13148506-13148626 ( 87) CTGACTGA 1 chrX:7583874-7583994 ( 90) CTGACTGA 1 chr2L:16442722-16442842 ( 43) CTGACTGA 1 chr3L:15896586-15896706 ( 77) CTGACTGA 1 chr3L:21887748-21887868 ( 88) CTGACTGA 1 chrX:5487520-5487640 ( 51) CTGACTGA 1 chr2R:19929231-19929351 ( 54) CTGACTGA 1 chr3L:19076115-19076235 ( 80) CTGACTGA 1 chrX:9478895-9479015 ( 16) CTGACTGA 1 chr2R:16442535-16442655 ( 59) CTGACTGA 1 chr2R:20181743-20181863 ( 18) CTGACTGA 1 chr3L:7874646-7874766 ( 69) CTGACTGA 1 chr3L:14821272-14821392 ( 32) CTGACTGA 1 chr3R:23503650-23503770 ( 43) CTGACTGA 1 chr3R:12290977-12291097 ( 88) CTGACTGA 1 chr2R:14088482-14088602 ( 40) CTGACTGA 1 chr3R:29508690-29508810 ( 28) CTGACTGA 1 chr2R:19606181-19606301 ( 105) CTGACTGA 1 chrX:1110324-1110444 ( 57) CTGACTGA 1 chr3L:18769921-18770041 ( 12) CTGACTGA 1 chrX:17494067-17494187 ( 65) CTGACTGA 1 chr3L:16886308-16886428 ( 50) CTGACTGA 1 chr3L:15634507-15634627 ( 72) CTGACTGA 1 chr2R:20524746-20524866 ( 66) CTGAATGA 1 chr3L:3452443-3452563 ( 62) CTGAATGA 1 chr3R:22889441-22889561 ( 42) CTGAATGA 1 chr2R:11071738-11071858 ( 40) CTGAATGA 1 chr3L:10205939-10206059 ( 39) CTGAATGA 1 chrX:4330929-4331049 ( 55) CTGAATGA 1 chr3L:12641367-12641487 ( 50) CTGAATGA 1 chrX:7776274-7776394 ( 23) CTGAATGA 1 chr2L:15024526-15024646 ( 53) CTGAATGA 1 chr2R:14927713-14927833 ( 49) CTGAATGA 1 chr2L:20806758-20806878 ( 33) CTGAATGA 1 chr3R:5027736-5027856 ( 36) CTGAATGA 1 chr3R:18088377-18088497 ( 76) CTGAATGA 1 chr3R:16504680-16504800 ( 43) CTGAATGA 1 chrX:9991431-9991551 ( 77) CTGATTGA 1 chr3L:13035449-13035569 ( 23) CTGATTGA 1 chr2R:8044549-8044669 ( 81) CTGATTGA 1 chr3R:21023257-21023377 ( 66) CTGATTGA 1 chrX:16698311-16698431 ( 42) CTGATTGA 1 chr2L:8423209-8423329 ( 2) CTGATTGA 1 chrX:11527188-11527308 ( 23) ATGACTGA 1 chr3R:23336652-23336772 ( 34) ATGACTGA 1 chr3L:8529057-8529177 ( 58) TTGACTGA 1 chr2R:15560188-15560308 ( 90) CTAACTGA 1 chr3L:18561739-18561859 ( 28) CTAACTGA 1 chr3R:24888522-24888642 ( 82) CTAACTGA 1 chr2R:12112398-12112518 ( 73) CTAACTGA 1 chrX:15630101-15630221 ( 86) CTAACTGA 1 chrX:1715845-1715965 ( 70) ATGAATGA 1 chr3L:14077923-14078043 ( 72) ATGAATGA 1 chrX:751547-751667 ( 52) ATGAATGA 1 chr2L:1432306-1432426 ( 21) ATGAATGA 1 chrX:2969178-2969298 ( 20) ATGAATGA 1 chr2R:12771740-12771860 ( 40) ATGAATGA 1 chr3R:22288444-22288564 ( 62) ATGAATGA 1 chr3L:3454569-3454689 ( 16) ATGAATGA 1 chrX:3404837-3404957 ( 91) ATGAATGA 1 chr3R:21631927-21632047 ( 57) TTGAATGA 1 chr2L:18641226-18641346 ( 51) ATGATTGA 1 chr2L:14631459-14631579 ( 15) CTGTCTGA 1 chr3L:20857748-20857868 ( 70) CTGTCTGA 1 chr2R:13471890-13472010 ( 99) CTGTCTGA 1 chr2R:22541356-22541476 ( 31) TTGATTGA 1 chr3L:13863960-13864080 ( 64) TTGATTGA 1 chr2L:1471419-1471539 ( 46) TTGATTGA 1 chr2R:16967372-16967492 ( 111) TTGATTGA 1 chr3L:4448688-4448808 ( 47) TTGATTGA 1 chr2L:18914968-18915088 ( 54) TTGATTGA 1 chrX:9708227-9708347 ( 41) TTGATTGA 1 chr2R:12483411-12483531 ( 34) CTAATTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1524 E= 1.2e-080 -103 171 -1317 -141 -1317 -1317 -1317 194 -203 -1317 199 -1317 186 -1317 -1317 -299 -3 128 -1317 -67 -1317 -1317 -1317 194 -1317 -1317 208 -1317 190 -1317 -1317 -1317 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 92 E= 1.2e-080 0.130435 0.771739 0.000000 0.097826 0.000000 0.000000 0.000000 1.000000 0.065217 0.000000 0.934783 0.000000 0.967391 0.000000 0.000000 0.032609 0.260870 0.576087 0.000000 0.163043 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGACTGA MEME-1 regular expression -------------------------------------------------------------------------------- CTGA[CA]TGA -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CAKTCAKT MEME-2 width = 8 sites = 109 llr = 898 E-value = 9.6e-072 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a1::a:: pos.-specific C a:13a::2 probability G ::6:::6: matrix T ::37::48 bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.2 ** ** * Entropy 1.0 ** ***** (11.9 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGTCAGT consensus TC TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10771466-10771586 29 1.51e-05 CCcatccatc cagtcagt cacacattca chr3R:21941023-21941143 55 1.51e-05 TTTTgtcatt cagtcagt tcgtcattcc chr3L:19239914-19240034 45 1.51e-05 cacagtcatt cagtcagt cactcagtca chr2R:13916575-13916695 65 1.51e-05 Ttcagtcagt cagtcagt cagtcagcca chr2R:14559619-14559739 51 1.51e-05 CCACCGCCGC cagtcagt cagtttgtca chrX:14531086-14531206 59 1.51e-05 ttccgttgtt cagtcagt cattcgttca chr3R:25636238-25636358 82 1.51e-05 tttagccact cagtcagt ttgccaacct chrX:3005095-3005215 72 1.51e-05 gtcagtcagt cagtcagt caatcaatca chrX:3105617-3105737 113 1.51e-05 AAGCGTTTTA CAGTCAGT chr3L:22352790-22352910 81 1.51e-05 gtcagccagt cagtcagt cagtctggta chrX:5975250-5975370 60 1.51e-05 atcgcgcagt cagtcagt tggacattca chr3R:20477684-20477804 36 1.51e-05 gtcagtcagt cagtcagt cagtcagCCG chr2R:23590764-23590884 73 1.51e-05 gtcattcagt cagtcagt cagtcagtca chr3L:11469276-11469396 74 1.51e-05 gtcagtcagt cagtcagt cagtcagtTT chrX:7526922-7527042 28 1.51e-05 GGTTCtctgt cagtcagt tagtcattcg chr3R:13087127-13087247 93 1.51e-05 gttagtcagt cagtcagt cattcagtca chrX:19023151-19023271 76 1.51e-05 ttcgctcagt cagtcagt caatcatgca chr2R:11519525-11519645 58 1.51e-05 gtcagtcagt cagtcagt cagtcaTTCC chr2L:8892465-8892585 72 1.51e-05 gtcactcagt cagtcagt cagtcagtca chr2L:14631459-14631579 23 1.51e-05 CGCTgtctga cagtcagt cattcagtta chr2L:4356750-4356870 48 1.51e-05 gtcagtctgc cagtcagt ccgtcaatcC chr3R:21947551-21947671 46 1.51e-05 CTCAGTTGGT CAGTCAGT CCGGTCGTCA chr3L:8362738-8362858 54 1.51e-05 GGCTgtcagt cagtcagt tggtcagtta chr3L:6456865-6456985 55 1.51e-05 Ttcagtcatt cagtcagt cattcaatca chr3L:8002572-8002692 51 1.51e-05 Atcagtcagt cagtcagt cattcaatca chr3R:8280099-8280219 62 1.51e-05 ATCCCCGGCC cagtcagt cagtcattca chr2L:18526107-18526227 70 1.51e-05 gccattcagt cagtcagt caataagtca chr2R:15474898-15475018 62 1.51e-05 gtccgtcatt cagtcagt cCAAGTCGAC chrX:7541252-7541372 66 1.51e-05 ggccgtctgg cagtcagt cattcaagca chrX:10867831-10867951 88 1.51e-05 tccatccatA CAGTCAGT CGAATCAGTT chr3L:21819636-21819756 93 1.51e-05 gtcaagcatt cagtcagt cCCGCCGACG chr3R:11467951-11468071 35 1.51e-05 aactatcagt cagtcagt tagtccgtca chr3L:6451711-6451831 35 1.51e-05 ttcagtcatc cagtcagt cagtcagtca chr2L:19089034-19089154 88 1.51e-05 tccagtcatc cagtcagt ttgtcatgca chr2L:1547999-1548119 78 1.51e-05 ttcactccgt cagtcagt cattcaaacg chr3L:9115793-9115913 101 1.51e-05 gtcactcagt cagtcagt TGAGGTGCTC chr3R:15457525-15457645 46 1.51e-05 gtcagccagt cagtcagt cagtcagtca chr3R:7259729-7259849 83 1.51e-05 gtcagtcagc cagtcagt GTGAACAATA chr3R:8224865-8224985 62 1.51e-05 tccagtcatc cagtcagt cactcagtta chr3L:1394581-1394701 57 1.51e-05 atcagtcagt cagtcagt caatcagcag chr2L:8721146-8721266 78 1.51e-05 gccagtcagt cagtcagt tagtcagtcg chr3L:3454569-3454689 94 1.51e-05 gtcagtcagc cagtcagt cggctggcca chr2R:12766205-12766325 72 1.51e-05 ctcactctgc cagtcagt cactcactca chr2R:23584448-23584568 106 1.51e-05 gtcagtcagt cagtcagt caAGCCA chr3L:10646051-10646171 68 1.51e-05 gtcagccaat cagtcagt cagccattca chr2L:19785309-19785429 14 1.51e-05 CTGAGACTgc cagtcagt taggcagttc chr3L:4438975-4439095 59 3.17e-05 CCAGGTTCAT CAGTCATT TAGTCAATAT chr3L:22671471-22671591 4 3.17e-05 GCG CAGTCATT TCAACAGAGC chr2L:17241680-17241800 78 4.83e-05 CCACTGTGCC cattcagt caaccattca chr3L:21857729-21857849 75 4.83e-05 atcgctcacg cattcagt tagtcagtca chr3R:20603383-20603503 29 4.83e-05 TAAATGCACT CATTCAGT CGTTGTCATG chrX:5189761-5189881 72 4.83e-05 ttcattcact cattcaGT CCGCCAGCCA chrX:7462228-7462348 85 4.83e-05 ccatccCATT CATTCAGT CGTATGTATA chr2L:6176502-6176622 49 8.03e-05 ttcacccatt cattcatt cactcattca chrX:1250223-1250343 12 8.03e-05 TGGCCTGTtt cattcatt cattcattca chr3L:12772893-12773013 73 8.03e-05 GTCCGCATAG CATTCATT GCAGTTTCTA chr3L:12260794-12260914 28 8.03e-05 GCTAGTGATT CATTCATT TCATTGGCCG chr3L:14712632-14712752 55 8.03e-05 tccatccatc cattcatt caCTCACCCG chr3R:19323677-19323797 44 8.03e-05 Ttcattcatt cattcatt cattcactca chr2L:17763312-17763432 79 8.03e-05 ggcattcact cattcatt cgggcattcG chr3R:29518062-29518182 74 8.03e-05 gtgtggcact cattcatt catGCCTCAT chr2R:21852217-21852337 19 9.41e-05 TATTTACTgt cagtcagc cagcgagtcg chrX:9744972-9745092 42 1.09e-04 Accatccaac cagccatt catccaacca chr3R:29899774-29899894 22 1.09e-04 AGCGCATGCG CAGCCATT aagccaggca chr2R:17251737-17251857 63 1.24e-04 accatccatc catccaGT TCAAAGCCAC chrX:7623146-7623266 47 1.24e-04 TCCATCCATC CATCCAGT CGTCAAATCG chr2R:14426588-14426708 33 1.39e-04 gccagccaCT CAGTCATC AGTTCGTGTA chr3R:7926493-7926613 26 1.55e-04 TTGTATACTC CATTCAGc catccatcca chr3L:1357010-1357130 28 1.71e-04 ACAGCCcctc catccatt cctcaatcca chrX:19408389-19408509 64 1.71e-04 tccaagcgtc catccatt catccaatca chr3R:4962005-4962125 27 1.71e-04 GGGCACtcat catccatt catccatcca chr2R:23162601-23162721 59 1.71e-04 tcctgccatc catccatt cgtccatcca chr3L:12699595-12699715 62 1.71e-04 TGCATCCATG CATCCATT TATCCATTCA chr3R:10299298-10299418 54 1.71e-04 tccatccatt catccatT GCGCCCTATA chr3L:19579485-19579605 40 1.71e-04 tccatccatc catccatt catccattca chr2R:22541356-22541476 78 1.84e-04 GTGACGCAAC CAGCCAGC AGCGAGCATT chr3L:19335529-19335649 109 1.84e-04 ATTTATGCTC CAGCCAGC GGTA chrX:16136059-16136179 23 1.84e-04 gccagccagc cagccagc caaccatcca chrX:16698311-16698431 66 1.84e-04 GGCAGATTGA CAGCCAGC CGGTTGGACA chr2R:23255222-23255342 55 2.16e-04 TGCCGGGCAT CACTCAGT GCAGTCAATG chr2R:16967372-16967492 56 2.16e-04 AGTCGGTTTT CATTCATC CAGACATTCA chr2L:13095944-13096064 52 2.47e-04 tccatccgtc cagccatc catctggcca chr3L:13863960-13864080 99 2.47e-04 GGTGCAAACA CAATCAGT TGACTATCTC chr3R:14174192-14174312 46 2.47e-04 TCCAGCTATT CAGccatc catccatcca chr2L:8098070-8098190 55 2.47e-04 GCAATTGAGT CAATCAGT TAGGCACTTG chr3R:11316806-11316926 49 2.47e-04 tcaatccatc cagccatc catccatcca chr2R:10453738-10453858 38 2.47e-04 ATATCTTCAT CAATCAGT TGGGCAGTCG chr3R:31548905-31549025 62 2.47e-04 tccagccatc cagccatc caaccatccg chr2R:6980716-6980836 64 2.47e-04 cccatccatc cagccatc aatccatcca chr3L:16886308-16886428 70 2.47e-04 gaccgactga cAATCAGT TTGCATATGC chrX:21002058-21002178 26 2.77e-04 TGATGGTGAG CACTCATT TAGACTCAGA chr3R:20595536-20595656 33 2.77e-04 GAATGACATG CACTCATT CAATCCGTCC chr3R:17550124-17550244 51 2.77e-04 cccatccata catccagc tatccatcta chr3L:19076115-19076235 59 2.77e-04 ATCAGTTGGC CACTCATT CAATACGGGC chr2L:7807702-7807822 55 2.77e-04 ATCAGTCAGG CACTCATT CTATCAAGTC chr2L:14316843-14316963 98 2.77e-04 GCGACTCATT CACTCATT CGTTCGTTCA chr2L:14628905-14629025 57 2.96e-04 ACCAAGTCGT CAATCATT TTCATTTCGT chr3L:13658839-13658959 60 2.96e-04 GTGTGTCATT CAATCATT CCCTCATTAG chr2L:2915852-2915972 54 3.25e-04 tccaaccatc catccatc catccaCTAA chrX:19537446-19537566 93 3.25e-04 tccatccatc catccatc TATCTGCGTG chr3L:21607929-21608049 42 3.25e-04 Gccatccatc catccatc cgtccatccg chrX:8862822-8862942 72 3.25e-04 ATTGTCAATT CATCCATC GATCAAACTC chr2R:21574326-21574446 16 3.25e-04 GCAATTCGGG catccatc cgtccaccca chr3L:14062841-14062961 65 3.25e-04 accatccatc catccatc caaccaacca chr3R:17359509-17359629 56 3.25e-04 tccacccatc catccatc catcGCACTT chr2R:9953591-9953711 57 3.25e-04 tccgtccatc catccatc catccatcca chrX:15128019-15128139 68 3.25e-04 tccatccaac catccatc catctatcca chr2R:13471890-13472010 36 3.25e-04 CATCGGcatc catccatc catctatcca chr2L:1432306-1432426 99 4.17e-04 TTGTGCGGTC CACTCATC TGCGATATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10771466-10771586 1.5e-05 28_[+2]_84 chr3R:21941023-21941143 1.5e-05 54_[+2]_58 chr3L:19239914-19240034 1.5e-05 44_[+2]_68 chr2R:13916575-13916695 1.5e-05 64_[+2]_48 chr2R:14559619-14559739 1.5e-05 50_[+2]_62 chrX:14531086-14531206 1.5e-05 58_[+2]_54 chr3R:25636238-25636358 1.5e-05 81_[+2]_31 chrX:3005095-3005215 1.5e-05 71_[+2]_41 chrX:3105617-3105737 1.5e-05 112_[+2] chr3L:22352790-22352910 1.5e-05 80_[+2]_32 chrX:5975250-5975370 1.5e-05 59_[+2]_53 chr3R:20477684-20477804 1.5e-05 35_[+2]_77 chr2R:23590764-23590884 1.5e-05 72_[+2]_40 chr3L:11469276-11469396 1.5e-05 73_[+2]_39 chrX:7526922-7527042 1.5e-05 27_[+2]_85 chr3R:13087127-13087247 1.5e-05 92_[+2]_20 chrX:19023151-19023271 1.5e-05 75_[+2]_37 chr2R:11519525-11519645 1.5e-05 57_[+2]_55 chr2L:8892465-8892585 1.5e-05 71_[+2]_41 chr2L:14631459-14631579 1.5e-05 22_[+2]_90 chr2L:4356750-4356870 1.5e-05 47_[+2]_65 chr3R:21947551-21947671 1.5e-05 45_[+2]_67 chr3L:8362738-8362858 1.5e-05 53_[+2]_59 chr3L:6456865-6456985 1.5e-05 54_[+2]_58 chr3L:8002572-8002692 1.5e-05 50_[+2]_62 chr3R:8280099-8280219 1.5e-05 61_[+2]_51 chr2L:18526107-18526227 1.5e-05 69_[+2]_43 chr2R:15474898-15475018 1.5e-05 61_[+2]_51 chrX:7541252-7541372 1.5e-05 65_[+2]_47 chrX:10867831-10867951 1.5e-05 87_[+2]_25 chr3L:21819636-21819756 1.5e-05 92_[+2]_20 chr3R:11467951-11468071 1.5e-05 34_[+2]_78 chr3L:6451711-6451831 1.5e-05 34_[+2]_78 chr2L:19089034-19089154 1.5e-05 87_[+2]_25 chr2L:1547999-1548119 1.5e-05 77_[+2]_35 chr3L:9115793-9115913 1.5e-05 100_[+2]_12 chr3R:15457525-15457645 1.5e-05 45_[+2]_67 chr3R:7259729-7259849 1.5e-05 82_[+2]_30 chr3R:8224865-8224985 1.5e-05 61_[+2]_51 chr3L:1394581-1394701 1.5e-05 56_[+2]_56 chr2L:8721146-8721266 1.5e-05 77_[+2]_35 chr3L:3454569-3454689 1.5e-05 93_[+2]_19 chr2R:12766205-12766325 1.5e-05 71_[+2]_41 chr2R:23584448-23584568 1.5e-05 105_[+2]_7 chr3L:10646051-10646171 1.5e-05 67_[+2]_45 chr2L:19785309-19785429 1.5e-05 13_[+2]_99 chr3L:4438975-4439095 3.2e-05 58_[+2]_54 chr3L:22671471-22671591 3.2e-05 3_[+2]_109 chr2L:17241680-17241800 4.8e-05 77_[+2]_35 chr3L:21857729-21857849 4.8e-05 74_[+2]_38 chr3R:20603383-20603503 4.8e-05 28_[+2]_84 chrX:5189761-5189881 4.8e-05 71_[+2]_41 chrX:7462228-7462348 4.8e-05 84_[+2]_28 chr2L:6176502-6176622 8e-05 48_[+2]_64 chrX:1250223-1250343 8e-05 11_[+2]_101 chr3L:12772893-12773013 8e-05 72_[+2]_40 chr3L:12260794-12260914 8e-05 27_[+2]_85 chr3L:14712632-14712752 8e-05 54_[+2]_58 chr3R:19323677-19323797 8e-05 43_[+2]_69 chr2L:17763312-17763432 8e-05 78_[+2]_34 chr3R:29518062-29518182 8e-05 73_[+2]_39 chr2R:21852217-21852337 9.4e-05 18_[+2]_94 chrX:9744972-9745092 0.00011 41_[+2]_71 chr3R:29899774-29899894 0.00011 21_[+2]_91 chr2R:17251737-17251857 0.00012 62_[+2]_50 chrX:7623146-7623266 0.00012 46_[+2]_66 chr2R:14426588-14426708 0.00014 32_[+2]_80 chr3R:7926493-7926613 0.00015 25_[+2]_87 chr3L:1357010-1357130 0.00017 27_[+2]_85 chrX:19408389-19408509 0.00017 63_[+2]_49 chr3R:4962005-4962125 0.00017 26_[+2]_86 chr2R:23162601-23162721 0.00017 58_[+2]_54 chr3L:12699595-12699715 0.00017 61_[+2]_51 chr3R:10299298-10299418 0.00017 53_[+2]_59 chr3L:19579485-19579605 0.00017 39_[+2]_73 chr2R:22541356-22541476 0.00018 77_[+2]_35 chr3L:19335529-19335649 0.00018 108_[+2]_4 chrX:16136059-16136179 0.00018 22_[+2]_90 chrX:16698311-16698431 0.00018 65_[+2]_47 chr2R:23255222-23255342 0.00022 54_[+2]_58 chr2R:16967372-16967492 0.00022 55_[+2]_57 chr2L:13095944-13096064 0.00025 51_[+2]_61 chr3L:13863960-13864080 0.00025 98_[+2]_14 chr3R:14174192-14174312 0.00025 45_[+2]_67 chr2L:8098070-8098190 0.00025 54_[+2]_58 chr3R:11316806-11316926 0.00025 48_[+2]_64 chr2R:10453738-10453858 0.00025 37_[+2]_75 chr3R:31548905-31549025 0.00025 61_[+2]_51 chr2R:6980716-6980836 0.00025 63_[+2]_49 chr3L:16886308-16886428 0.00025 69_[+2]_43 chrX:21002058-21002178 0.00028 25_[+2]_87 chr3R:20595536-20595656 0.00028 32_[+2]_80 chr3R:17550124-17550244 0.00028 50_[+2]_62 chr3L:19076115-19076235 0.00028 58_[+2]_54 chr2L:7807702-7807822 0.00028 54_[+2]_58 chr2L:14316843-14316963 0.00028 97_[+2]_15 chr2L:14628905-14629025 0.0003 56_[+2]_56 chr3L:13658839-13658959 0.0003 59_[+2]_53 chr2L:2915852-2915972 0.00032 53_[+2]_59 chrX:19537446-19537566 0.00032 92_[+2]_20 chr3L:21607929-21608049 0.00032 41_[+2]_71 chrX:8862822-8862942 0.00032 71_[+2]_41 chr2R:21574326-21574446 0.00032 15_[+2]_97 chr3L:14062841-14062961 0.00032 64_[+2]_48 chr3R:17359509-17359629 0.00032 55_[+2]_57 chr2R:9953591-9953711 0.00032 56_[+2]_56 chrX:15128019-15128139 0.00032 67_[+2]_45 chr2R:13471890-13472010 0.00032 35_[+2]_77 chr2L:1432306-1432426 0.00042 98_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAKTCAKT width=8 seqs=109 chr2R:10771466-10771586 ( 29) CAGTCAGT 1 chr3R:21941023-21941143 ( 55) CAGTCAGT 1 chr3L:19239914-19240034 ( 45) CAGTCAGT 1 chr2R:13916575-13916695 ( 65) CAGTCAGT 1 chr2R:14559619-14559739 ( 51) CAGTCAGT 1 chrX:14531086-14531206 ( 59) CAGTCAGT 1 chr3R:25636238-25636358 ( 82) CAGTCAGT 1 chrX:3005095-3005215 ( 72) CAGTCAGT 1 chrX:3105617-3105737 ( 113) CAGTCAGT 1 chr3L:22352790-22352910 ( 81) CAGTCAGT 1 chrX:5975250-5975370 ( 60) CAGTCAGT 1 chr3R:20477684-20477804 ( 36) CAGTCAGT 1 chr2R:23590764-23590884 ( 73) CAGTCAGT 1 chr3L:11469276-11469396 ( 74) CAGTCAGT 1 chrX:7526922-7527042 ( 28) CAGTCAGT 1 chr3R:13087127-13087247 ( 93) CAGTCAGT 1 chrX:19023151-19023271 ( 76) CAGTCAGT 1 chr2R:11519525-11519645 ( 58) CAGTCAGT 1 chr2L:8892465-8892585 ( 72) CAGTCAGT 1 chr2L:14631459-14631579 ( 23) CAGTCAGT 1 chr2L:4356750-4356870 ( 48) CAGTCAGT 1 chr3R:21947551-21947671 ( 46) CAGTCAGT 1 chr3L:8362738-8362858 ( 54) CAGTCAGT 1 chr3L:6456865-6456985 ( 55) CAGTCAGT 1 chr3L:8002572-8002692 ( 51) CAGTCAGT 1 chr3R:8280099-8280219 ( 62) CAGTCAGT 1 chr2L:18526107-18526227 ( 70) CAGTCAGT 1 chr2R:15474898-15475018 ( 62) CAGTCAGT 1 chrX:7541252-7541372 ( 66) CAGTCAGT 1 chrX:10867831-10867951 ( 88) CAGTCAGT 1 chr3L:21819636-21819756 ( 93) CAGTCAGT 1 chr3R:11467951-11468071 ( 35) CAGTCAGT 1 chr3L:6451711-6451831 ( 35) CAGTCAGT 1 chr2L:19089034-19089154 ( 88) CAGTCAGT 1 chr2L:1547999-1548119 ( 78) CAGTCAGT 1 chr3L:9115793-9115913 ( 101) CAGTCAGT 1 chr3R:15457525-15457645 ( 46) CAGTCAGT 1 chr3R:7259729-7259849 ( 83) CAGTCAGT 1 chr3R:8224865-8224985 ( 62) CAGTCAGT 1 chr3L:1394581-1394701 ( 57) CAGTCAGT 1 chr2L:8721146-8721266 ( 78) CAGTCAGT 1 chr3L:3454569-3454689 ( 94) CAGTCAGT 1 chr2R:12766205-12766325 ( 72) CAGTCAGT 1 chr2R:23584448-23584568 ( 106) CAGTCAGT 1 chr3L:10646051-10646171 ( 68) CAGTCAGT 1 chr2L:19785309-19785429 ( 14) CAGTCAGT 1 chr3L:4438975-4439095 ( 59) CAGTCATT 1 chr3L:22671471-22671591 ( 4) CAGTCATT 1 chr2L:17241680-17241800 ( 78) CATTCAGT 1 chr3L:21857729-21857849 ( 75) CATTCAGT 1 chr3R:20603383-20603503 ( 29) CATTCAGT 1 chrX:5189761-5189881 ( 72) CATTCAGT 1 chrX:7462228-7462348 ( 85) CATTCAGT 1 chr2L:6176502-6176622 ( 49) CATTCATT 1 chrX:1250223-1250343 ( 12) CATTCATT 1 chr3L:12772893-12773013 ( 73) CATTCATT 1 chr3L:12260794-12260914 ( 28) CATTCATT 1 chr3L:14712632-14712752 ( 55) CATTCATT 1 chr3R:19323677-19323797 ( 44) CATTCATT 1 chr2L:17763312-17763432 ( 79) CATTCATT 1 chr3R:29518062-29518182 ( 74) CATTCATT 1 chr2R:21852217-21852337 ( 19) CAGTCAGC 1 chrX:9744972-9745092 ( 42) CAGCCATT 1 chr3R:29899774-29899894 ( 22) CAGCCATT 1 chr2R:17251737-17251857 ( 63) CATCCAGT 1 chrX:7623146-7623266 ( 47) CATCCAGT 1 chr2R:14426588-14426708 ( 33) CAGTCATC 1 chr3R:7926493-7926613 ( 26) CATTCAGC 1 chr3L:1357010-1357130 ( 28) CATCCATT 1 chrX:19408389-19408509 ( 64) CATCCATT 1 chr3R:4962005-4962125 ( 27) CATCCATT 1 chr2R:23162601-23162721 ( 59) CATCCATT 1 chr3L:12699595-12699715 ( 62) CATCCATT 1 chr3R:10299298-10299418 ( 54) CATCCATT 1 chr3L:19579485-19579605 ( 40) CATCCATT 1 chr2R:22541356-22541476 ( 78) CAGCCAGC 1 chr3L:19335529-19335649 ( 109) CAGCCAGC 1 chrX:16136059-16136179 ( 23) CAGCCAGC 1 chrX:16698311-16698431 ( 66) CAGCCAGC 1 chr2R:23255222-23255342 ( 55) CACTCAGT 1 chr2R:16967372-16967492 ( 56) CATTCATC 1 chr2L:13095944-13096064 ( 52) CAGCCATC 1 chr3L:13863960-13864080 ( 99) CAATCAGT 1 chr3R:14174192-14174312 ( 46) CAGCCATC 1 chr2L:8098070-8098190 ( 55) CAATCAGT 1 chr3R:11316806-11316926 ( 49) CAGCCATC 1 chr2R:10453738-10453858 ( 38) CAATCAGT 1 chr3R:31548905-31549025 ( 62) CAGCCATC 1 chr2R:6980716-6980836 ( 64) CAGCCATC 1 chr3L:16886308-16886428 ( 70) CAATCAGT 1 chrX:21002058-21002178 ( 26) CACTCATT 1 chr3R:20595536-20595656 ( 33) CACTCATT 1 chr3R:17550124-17550244 ( 51) CATCCAGC 1 chr3L:19076115-19076235 ( 59) CACTCATT 1 chr2L:7807702-7807822 ( 55) CACTCATT 1 chr2L:14316843-14316963 ( 98) CACTCATT 1 chr2L:14628905-14629025 ( 57) CAATCATT 1 chr3L:13658839-13658959 ( 60) CAATCATT 1 chr2L:2915852-2915972 ( 54) CATCCATC 1 chrX:19537446-19537566 ( 93) CATCCATC 1 chr3L:21607929-21608049 ( 42) CATCCATC 1 chrX:8862822-8862942 ( 72) CATCCATC 1 chr2R:21574326-21574446 ( 16) CATCCATC 1 chr3L:14062841-14062961 ( 65) CATCCATC 1 chr3R:17359509-17359629 ( 56) CATCCATC 1 chr2R:9953591-9953711 ( 57) CATCCATC 1 chrX:15128019-15128139 ( 68) CATCCATC 1 chr2R:13471890-13472010 ( 36) CATCCATC 1 chr2L:1432306-1432426 ( 99) CACTCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1408 E= 9.6e-072 -1341 208 -1341 -1341 190 -1341 -1341 -1341 -228 -188 124 30 -1341 27 -1341 146 -1341 208 -1341 -1341 190 -1341 -1341 -1341 -1341 -1341 134 63 -1341 -5 -1341 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 109 E= 9.6e-072 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.055046 0.064220 0.559633 0.321101 0.000000 0.284404 0.000000 0.715596 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.596330 0.403670 0.000000 0.229358 0.000000 0.770642 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAKTCAKT MEME-2 regular expression -------------------------------------------------------------------------------- CA[GT][TC]CA[GT][TC] -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF KYCATYCA MEME-3 width = 8 sites = 78 llr = 661 E-value = 1.3e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C :4a::3a: probability G 4:::2::: matrix T 66::87:: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.2 *** ** Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTCA consensus GC GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10771466-10771586 83 1.83e-05 tattcattca ttcattca gtgaggcagt chrX:1250223-1250343 22 1.83e-05 cattcattca ttcattca tttattcGAT chr2L:17241680-17241800 96 1.83e-05 caaccattca ttcattca ttcattcTTG chrX:3105617-3105737 44 1.83e-05 cattcgctca ttcattca ttTCGGACTC chr3L:22352790-22352910 59 1.83e-05 cattcccaca ttcattca ttcagtcagc chrX:5189761-5189881 62 1.83e-05 cattcattca ttcattca ctcattcaGT chr3L:8002572-8002692 15 1.83e-05 CACTAGCTCA TTCATTCA ACCAGCAGCA chr3R:19323677-19323797 34 1.83e-05 AGTCCCAGTC Ttcattca ttcattcatt chr2L:19089034-19089154 106 1.83e-05 ttgtcatgca ttcattca tctattc chr2L:1547999-1548119 64 1.83e-05 cactcattca ttcattca ctccgtcagt chr3L:9115793-9115913 67 1.83e-05 tagtcaggca ttcattca gtcagtcagt chr3R:29518062-29518182 40 1.83e-05 cattcattca ttcattca atcgttcagt chr3L:12699595-12699715 72 3.50e-05 CATCCATTTA TCCATTCA TCCGTTTATG chr2L:14631459-14631579 46 3.50e-05 agttagtcat tcCATTCA ATTGTTCATG chr2L:17763312-17763432 41 3.50e-05 CCAACGTTCA TCcattca atcactcagt chr3L:19579485-19579605 50 3.50e-05 catccattca tccattca cccatctgtc chr2R:13916575-13916695 83 5.16e-05 cagtcagcca gtcattca gccagtcaTT chr3R:25636238-25636358 36 5.16e-05 cagttagtca gtcattca gtccgtcagt chrX:3005095-3005215 42 5.16e-05 cggccagcca gtcattca gccagccaac chr3R:20477684-20477804 82 5.16e-05 GAGTCAGTTT GTCATTCA GTCAATCGGC chr2R:23590764-23590884 63 5.16e-05 GTAGGCGGTC gtcattca gtcagtcagt chrX:7526922-7527042 54 5.16e-05 cgctcagtca gtcattca gtcagtatat chr3L:12260794-12260914 46 5.16e-05 TCATTGGCCG GTCATTCA GGTAccctcc chr2L:8892465-8892585 46 5.16e-05 AAGTAagtca gtcattca gttagtcagt chr3R:8280099-8280219 72 5.16e-05 cagtcagtca gtcattca gtcagtcagt chr3R:11467951-11468071 57 5.16e-05 ccgtcagtca gtcattca tttgggctgt chr3L:6451711-6451831 21 5.16e-05 GACCACgtca gtcattca gtcatccagt chr3R:8224865-8224985 80 5.16e-05 cactcagtta gtcattca gccggttagc chr2R:12766205-12766325 102 5.16e-05 cactcaccca gtcattca ctcTGCGAGT chr2R:8755804-8755924 49 6.67e-05 CTgtcattct gccattca ggcagctagt chrX:19023151-19023271 94 6.67e-05 caatcatgca gccattca ATTTATCGTT chrX:9064181-9064301 4 6.67e-05 CGG GCCATTCA AAAAACACTC chr2L:18526107-18526227 60 6.67e-05 cattcagtca gccattca gtcagtcagt chr3L:10646051-10646171 78 6.67e-05 cagtcagtca gccattca gtcagttagc chrX:7462228-7462348 34 8.34e-05 ATTACCGACG TTcatcca tccatctatc chr2R:21574326-21574446 86 8.34e-05 cacccatcaa ttcatcca tATGTGGCAC chrX:19408389-19408509 46 9.86e-05 catccatcca tccatcca tccaagcgtc chr2R:17251737-17251857 37 9.86e-05 catccatcca tccatcca tccatctaac chr3R:4962005-4962125 53 9.86e-05 catccatcca tccatcca tACATAACAA chrX:9744972-9745092 72 9.86e-05 caactatcca tccatcca tccaaccatc chrX:7623146-7623266 37 9.86e-05 GTCAGTTCAG TCCATCCA TCCATCCAGT chr2R:23162601-23162721 69 9.86e-05 catccattcg tccatcca tccatcctgc chr2L:2915852-2915972 32 9.86e-05 GCCccatcta tccatcca accatccaac chrX:19537446-19537566 75 9.86e-05 TATATatcca tccatcca tccatccatc chr3R:14174192-14174312 72 9.86e-05 catccatcca tccatcca tcAATCAATC chr3L:14712632-14712752 45 9.86e-05 cacccatcca tccatcca tccattcatt chr3R:10299298-10299418 44 9.86e-05 aatccatcaa tccatcca ttcatccatT chr3R:7926493-7926613 52 9.86e-05 catccatcca tccatcca tACATTATTG chr3R:17550124-17550244 33 9.86e-05 CCCTcatcca tccatcca cccatccata chrX:10867831-10867951 78 9.86e-05 caaccatcta tccatcca tACAGTCAGT chr3R:17359509-17359629 42 9.86e-05 catccatcca tccatcca cccatccatc chr3R:11316806-11316926 75 9.86e-05 caaccatcta tccatcca tcTGGCTGGC chr2R:6980716-6980836 74 9.86e-05 cagccatcaa tccatcca tccatACATT chrX:16136059-16136179 110 9.86e-05 aggccatcca tccatcca tcg chr2R:9953591-9953711 67 9.86e-05 catccatcca tccatcca ACAGTGGGTC chrX:15128019-15128139 82 9.86e-05 catccatcta tccatcca tATGTCCAAA chr3L:21607929-21608049 32 1.28e-04 CCCTATAGCC Gccatcca tccatccatc chr3L:21819636-21819756 111 1.28e-04 cCCGCCGACG GCCATCCA TC chr3R:31548905-31549025 48 1.28e-04 cagccatcca gccatcca gccatccagc chr3L:18561739-18561859 62 1.44e-04 GGCCCAATCC TTCAGTCA ATCGGTTTGA chr3L:11469276-11469396 110 1.44e-04 CAGTCTGGCA TTCAGTCA GGA chr3R:13087127-13087247 103 1.44e-04 cagtcagtca ttcagtca ctgagccaac chr3L:6456865-6456985 45 1.44e-04 CACTCAGTTG Ttcagtca ttcagtcagt chr3R:15457525-15457645 68 1.44e-04 cagtcactcc ttcagtca gtcaTTCTGG chr2L:19785309-19785429 56 1.44e-04 cattcactca ttcagtca gtcagccagt chr2R:14559619-14559739 65 1.74e-04 cagtcagttt gtcagtca ctcaatcagC chrX:14531086-14531206 25 1.74e-04 AGcagtcaga gtcagtca gccattcggt chr3L:21857729-21857849 85 1.74e-04 cattcagtta gtcagtca gccagtcaat chr2R:21852217-21852337 62 1.74e-04 ccgtcaatcc gtcagtca ggcaatGACA chr2R:11519525-11519645 48 1.74e-04 TAGCCATGca gtcagtca gtcagtcagt chr2R:15474898-15475018 40 1.74e-04 GACGCCAACT gtcagtca ctcagtccgt chrX:7541252-7541372 85 1.74e-04 attcaagcaa gtcagtca CACATATTGA chr3R:7259729-7259849 53 1.74e-04 tagtcagtca gtcagtca ctcaatcagg chr3L:3454569-3454689 84 1.74e-04 cactcagtca gtcagtca gccagtcagt chr2R:23584448-23584568 96 1.74e-04 cagccagcca gtcagtca gtcagtcagt chr2L:8721146-8721266 68 1.88e-04 cagccagcca gccagtca gtcagtcagt chrX:17370880-17371000 95 2.17e-04 TTGAGCAATA TCCAGCCA AGGGGTGAAC chr2R:14426588-14426708 3 2.43e-04 ca gccagcca gccagccagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10771466-10771586 1.8e-05 82_[+3]_30 chrX:1250223-1250343 1.8e-05 21_[+3]_91 chr2L:17241680-17241800 1.8e-05 95_[+3]_17 chrX:3105617-3105737 1.8e-05 43_[+3]_69 chr3L:22352790-22352910 1.8e-05 58_[+3]_54 chrX:5189761-5189881 1.8e-05 61_[+3]_51 chr3L:8002572-8002692 1.8e-05 14_[+3]_98 chr3R:19323677-19323797 1.8e-05 33_[+3]_79 chr2L:19089034-19089154 1.8e-05 105_[+3]_7 chr2L:1547999-1548119 1.8e-05 63_[+3]_49 chr3L:9115793-9115913 1.8e-05 66_[+3]_46 chr3R:29518062-29518182 1.8e-05 39_[+3]_73 chr3L:12699595-12699715 3.5e-05 71_[+3]_41 chr2L:14631459-14631579 3.5e-05 45_[+3]_67 chr2L:17763312-17763432 3.5e-05 40_[+3]_72 chr3L:19579485-19579605 3.5e-05 49_[+3]_63 chr2R:13916575-13916695 5.2e-05 82_[+3]_30 chr3R:25636238-25636358 5.2e-05 35_[+3]_77 chrX:3005095-3005215 5.2e-05 41_[+3]_71 chr3R:20477684-20477804 5.2e-05 81_[+3]_31 chr2R:23590764-23590884 5.2e-05 62_[+3]_50 chrX:7526922-7527042 5.2e-05 53_[+3]_59 chr3L:12260794-12260914 5.2e-05 45_[+3]_67 chr2L:8892465-8892585 5.2e-05 45_[+3]_67 chr3R:8280099-8280219 5.2e-05 71_[+3]_41 chr3R:11467951-11468071 5.2e-05 56_[+3]_56 chr3L:6451711-6451831 5.2e-05 20_[+3]_92 chr3R:8224865-8224985 5.2e-05 79_[+3]_33 chr2R:12766205-12766325 5.2e-05 101_[+3]_11 chr2R:8755804-8755924 6.7e-05 48_[+3]_64 chrX:19023151-19023271 6.7e-05 93_[+3]_19 chrX:9064181-9064301 6.7e-05 3_[+3]_109 chr2L:18526107-18526227 6.7e-05 59_[+3]_53 chr3L:10646051-10646171 6.7e-05 77_[+3]_35 chrX:7462228-7462348 8.3e-05 33_[+3]_79 chr2R:21574326-21574446 8.3e-05 85_[+3]_27 chrX:19408389-19408509 9.9e-05 45_[+3]_67 chr2R:17251737-17251857 9.9e-05 36_[+3]_76 chr3R:4962005-4962125 9.9e-05 52_[+3]_60 chrX:9744972-9745092 9.9e-05 71_[+3]_41 chrX:7623146-7623266 9.9e-05 36_[+3]_76 chr2R:23162601-23162721 9.9e-05 68_[+3]_44 chr2L:2915852-2915972 9.9e-05 31_[+3]_81 chrX:19537446-19537566 9.9e-05 74_[+3]_38 chr3R:14174192-14174312 9.9e-05 71_[+3]_41 chr3L:14712632-14712752 9.9e-05 44_[+3]_68 chr3R:10299298-10299418 9.9e-05 43_[+3]_69 chr3R:7926493-7926613 9.9e-05 51_[+3]_61 chr3R:17550124-17550244 9.9e-05 32_[+3]_80 chrX:10867831-10867951 9.9e-05 77_[+3]_35 chr3R:17359509-17359629 9.9e-05 41_[+3]_71 chr3R:11316806-11316926 9.9e-05 74_[+3]_38 chr2R:6980716-6980836 9.9e-05 73_[+3]_39 chrX:16136059-16136179 9.9e-05 109_[+3]_3 chr2R:9953591-9953711 9.9e-05 66_[+3]_46 chrX:15128019-15128139 9.9e-05 81_[+3]_31 chr3L:21607929-21608049 0.00013 31_[+3]_81 chr3L:21819636-21819756 0.00013 110_[+3]_2 chr3R:31548905-31549025 0.00013 47_[+3]_65 chr3L:18561739-18561859 0.00014 61_[+3]_51 chr3L:11469276-11469396 0.00014 109_[+3]_3 chr3R:13087127-13087247 0.00014 102_[+3]_10 chr3L:6456865-6456985 0.00014 44_[+3]_68 chr3R:15457525-15457645 0.00014 67_[+3]_45 chr2L:19785309-19785429 0.00014 55_[+3]_57 chr2R:14559619-14559739 0.00017 64_[+3]_48 chrX:14531086-14531206 0.00017 24_[+3]_88 chr3L:21857729-21857849 0.00017 84_[+3]_28 chr2R:21852217-21852337 0.00017 61_[+3]_51 chr2R:11519525-11519645 0.00017 47_[+3]_65 chr2R:15474898-15475018 0.00017 39_[+3]_73 chrX:7541252-7541372 0.00017 84_[+3]_28 chr3R:7259729-7259849 0.00017 52_[+3]_60 chr3L:3454569-3454689 0.00017 83_[+3]_29 chr2R:23584448-23584568 0.00017 95_[+3]_17 chr2L:8721146-8721266 0.00019 67_[+3]_45 chrX:17370880-17371000 0.00022 94_[+3]_18 chr2R:14426588-14426708 0.00024 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KYCATYCA width=8 seqs=78 chr2R:10771466-10771586 ( 83) TTCATTCA 1 chrX:1250223-1250343 ( 22) TTCATTCA 1 chr2L:17241680-17241800 ( 96) TTCATTCA 1 chrX:3105617-3105737 ( 44) TTCATTCA 1 chr3L:22352790-22352910 ( 59) TTCATTCA 1 chrX:5189761-5189881 ( 62) TTCATTCA 1 chr3L:8002572-8002692 ( 15) TTCATTCA 1 chr3R:19323677-19323797 ( 34) TTCATTCA 1 chr2L:19089034-19089154 ( 106) TTCATTCA 1 chr2L:1547999-1548119 ( 64) TTCATTCA 1 chr3L:9115793-9115913 ( 67) TTCATTCA 1 chr3R:29518062-29518182 ( 40) TTCATTCA 1 chr3L:12699595-12699715 ( 72) TCCATTCA 1 chr2L:14631459-14631579 ( 46) TCCATTCA 1 chr2L:17763312-17763432 ( 41) TCCATTCA 1 chr3L:19579485-19579605 ( 50) TCCATTCA 1 chr2R:13916575-13916695 ( 83) GTCATTCA 1 chr3R:25636238-25636358 ( 36) GTCATTCA 1 chrX:3005095-3005215 ( 42) GTCATTCA 1 chr3R:20477684-20477804 ( 82) GTCATTCA 1 chr2R:23590764-23590884 ( 63) GTCATTCA 1 chrX:7526922-7527042 ( 54) GTCATTCA 1 chr3L:12260794-12260914 ( 46) GTCATTCA 1 chr2L:8892465-8892585 ( 46) GTCATTCA 1 chr3R:8280099-8280219 ( 72) GTCATTCA 1 chr3R:11467951-11468071 ( 57) GTCATTCA 1 chr3L:6451711-6451831 ( 21) GTCATTCA 1 chr3R:8224865-8224985 ( 80) GTCATTCA 1 chr2R:12766205-12766325 ( 102) GTCATTCA 1 chr2R:8755804-8755924 ( 49) GCCATTCA 1 chrX:19023151-19023271 ( 94) GCCATTCA 1 chrX:9064181-9064301 ( 4) GCCATTCA 1 chr2L:18526107-18526227 ( 60) GCCATTCA 1 chr3L:10646051-10646171 ( 78) GCCATTCA 1 chrX:7462228-7462348 ( 34) TTCATCCA 1 chr2R:21574326-21574446 ( 86) TTCATCCA 1 chrX:19408389-19408509 ( 46) TCCATCCA 1 chr2R:17251737-17251857 ( 37) TCCATCCA 1 chr3R:4962005-4962125 ( 53) TCCATCCA 1 chrX:9744972-9745092 ( 72) TCCATCCA 1 chrX:7623146-7623266 ( 37) TCCATCCA 1 chr2R:23162601-23162721 ( 69) TCCATCCA 1 chr2L:2915852-2915972 ( 32) TCCATCCA 1 chrX:19537446-19537566 ( 75) TCCATCCA 1 chr3R:14174192-14174312 ( 72) TCCATCCA 1 chr3L:14712632-14712752 ( 45) TCCATCCA 1 chr3R:10299298-10299418 ( 44) TCCATCCA 1 chr3R:7926493-7926613 ( 52) TCCATCCA 1 chr3R:17550124-17550244 ( 33) TCCATCCA 1 chrX:10867831-10867951 ( 78) TCCATCCA 1 chr3R:17359509-17359629 ( 42) TCCATCCA 1 chr3R:11316806-11316926 ( 75) TCCATCCA 1 chr2R:6980716-6980836 ( 74) TCCATCCA 1 chrX:16136059-16136179 ( 110) TCCATCCA 1 chr2R:9953591-9953711 ( 67) TCCATCCA 1 chrX:15128019-15128139 ( 82) TCCATCCA 1 chr3L:21607929-21608049 ( 32) GCCATCCA 1 chr3L:21819636-21819756 ( 111) GCCATCCA 1 chr3R:31548905-31549025 ( 48) GCCATCCA 1 chr3L:18561739-18561859 ( 62) TTCAGTCA 1 chr3L:11469276-11469396 ( 110) TTCAGTCA 1 chr3R:13087127-13087247 ( 103) TTCAGTCA 1 chr3L:6456865-6456985 ( 45) TTCAGTCA 1 chr3R:15457525-15457645 ( 68) TTCAGTCA 1 chr2L:19785309-19785429 ( 56) TTCAGTCA 1 chr2R:14559619-14559739 ( 65) GTCAGTCA 1 chrX:14531086-14531206 ( 25) GTCAGTCA 1 chr3L:21857729-21857849 ( 85) GTCAGTCA 1 chr2R:21852217-21852337 ( 62) GTCAGTCA 1 chr2R:11519525-11519645 ( 48) GTCAGTCA 1 chr2R:15474898-15475018 ( 40) GTCAGTCA 1 chrX:7541252-7541372 ( 85) GTCAGTCA 1 chr3R:7259729-7259849 ( 53) GTCAGTCA 1 chr3L:3454569-3454689 ( 84) GTCAGTCA 1 chr2R:23584448-23584568 ( 96) GTCAGTCA 1 chr2L:8721146-8721266 ( 68) GCCAGTCA 1 chrX:17370880-17371000 ( 95) TCCAGCCA 1 chr2R:14426588-14426708 ( 3) GCCAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 1.3e-040 -1293 -1293 84 115 -1293 92 -1293 108 -1293 208 -1293 -1293 190 -1293 -1293 -1293 -1293 -1293 5 154 -1293 55 -1293 133 -1293 208 -1293 -1293 190 -1293 -1293 -1293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.3e-040 0.000000 0.000000 0.423077 0.576923 0.000000 0.448718 0.000000 0.551282 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.243590 0.756410 0.000000 0.346154 0.000000 0.653846 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYCATYCA MEME-3 regular expression -------------------------------------------------------------------------------- [TG][TC]CA[TG][TC]CA -------------------------------------------------------------------------------- Time 19.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GAMTGACT MEME-4 width = 8 sites = 88 llr = 722 E-value = 2.0e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1a3::a33 pos.-specific C ::5:::7: probability G 8:::a::: matrix T ::1a:::7 bits 2.1 * 1.9 * *** 1.7 * *** 1.5 ** *** Relative 1.2 ** **** Entropy 1.0 ** **** (11.8 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACTGACT consensus A AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10008685-10008805 74 1.51e-05 ctgactgact gactgact aactgaatga chr3R:13568480-13568600 55 1.51e-05 atgacgAGct gactgact gagtgaatga chr3R:19452929-19453049 74 1.51e-05 ctacctgacg gactgact gcctgactga chrX:12846699-12846819 26 1.51e-05 ctgactgact gactgact ggttggctgg chrX:8083555-8083675 50 1.51e-05 ctgactgatt gactgact ggctgactgt chr3R:21980261-21980381 50 1.51e-05 CCGAATGAGt gactgact aactgactaa chr3L:9252543-9252663 51 1.51e-05 ctgactgact gactgact gattggctga chrX:9734911-9735031 73 1.51e-05 ctgacagtat gactgact ACCGGGCCAA chrX:5057517-5057637 105 1.51e-05 gtactaaatg gactgact aactgGTG chr3R:15177731-15177851 50 1.51e-05 tcgactgatt gactgact gattgactga chr2R:11034341-11034461 89 1.51e-05 CGAAGtgact gactgact gactgactga chr2L:13148506-13148626 103 1.51e-05 gactctggat gactgact ggcATCAAAA chr3L:13035449-13035569 86 1.51e-05 tggattgatt gactgact acttgattga chrX:7583874-7583994 28 1.51e-05 Ttggctgacc gactgact aactggcaaa chr2L:16442722-16442842 73 1.51e-05 gtgattgaat gactgact actgcccagc chr3L:15896586-15896706 59 1.51e-05 cttacgaacg gactgact gcctggctga chrX:5487520-5487640 33 1.51e-05 ctgactgact gactgact gactaactga chrX:15630101-15630221 64 1.51e-05 ctaactgaca gactgact agccgactta chrX:9478895-9479015 70 1.51e-05 ctgactgact gactgact gGCGGACTGA chr2R:20181743-20181863 82 1.51e-05 gtgactgagt gactgact atttggccgg chr3L:14821272-14821392 50 1.51e-05 ctgcttgact gactgact gagtgactga chr3R:23503650-23503770 33 1.51e-05 ctgcctcacc gactgact gactgactga chr3R:12290977-12291097 54 1.51e-05 ttgacggaat gactgact cgctgactga chrX:17494067-17494187 39 1.51e-05 CTGATTGGCC gactgact aactgactaa chr2R:19154352-19154472 46 3.21e-05 AACACTGACC GAATGACT AACTGGCGGA chr3R:21631927-21632047 71 3.21e-05 ATGAGTGAGC GAATGACT GCTATTCACC chr3R:13847589-13847709 71 3.21e-05 ccaaatgact gaatgact gaatgactga chr2L:7955943-7956063 74 3.21e-05 ctgaacgaat gaatgact CGGACTTTGT chrX:7776274-7776394 65 3.21e-05 gtgactgagc gaatgact gagtgGCGTG chr2L:20806758-20806878 43 3.21e-05 ctgaatgaat gaatgact gaatgagtga chr2R:16442535-16442655 85 3.21e-05 ctggttggct gaatgact aaatgactga chr3L:7874646-7874766 55 3.21e-05 ctgaatggcc gaatgact gattgactga chr3L:18769921-18770041 46 3.21e-05 tgacggaatg gaatgact gagggattga chr3R:16504680-16504800 92 3.21e-05 acgaatgaat gaatgaCT CTCGAGTGGA chr3L:15634507-15634627 38 3.21e-05 CAAaccgaat gaatgact aactgagcgt chr2L:18867433-18867553 49 4.75e-05 GGGAATGAAA gactgaca aacggacgga chr3L:16028472-16028592 70 4.75e-05 AGAATTGACA GACTGACA CACTGAGACA chr2R:23158357-23158477 19 4.75e-05 AAGGAGGTGG GActgaca atctgacaat chr3R:29508690-29508810 66 4.75e-05 caaacgggca gactgaca aactgaAGCA chrX:16698311-16698431 24 4.75e-05 GAattgcatt gactgaca gattgatgga chr3R:22889441-22889561 52 6.45e-05 ctgaatgagt gactgaat gaatgaagga chrX:5124660-5124780 54 6.45e-05 TTGCAGCaat gactgaat gaatgaatga chr3R:24018547-24018667 53 6.45e-05 ctgactaact gactgaat gaatgacgga chrX:18662206-18662326 81 6.45e-05 ctgactgggc gactgaat ggcggacGCC chr2R:19929231-19929351 24 6.45e-05 ggctgacagt gactgaat gaatgaatga chr3R:18088377-18088497 46 6.45e-05 TCTGCCAAGC gactgaat gaatgaatga chrX:5114664-5114784 32 9.85e-05 CAAAGACACG GAATGACA TTGATGAACG chr2R:21605795-21605915 52 9.85e-05 gtgtACAGAG GAATGACA CAACCAAATT chr3L:19335529-19335649 50 9.85e-05 gtggccaact gattgact gaGAGTTTGC chr2R:8044549-8044669 67 9.85e-05 ctggctggct gattgact gattgactga chr3L:3921605-3921725 90 9.85e-05 GGAATGGAGG GAATGACA GGTGTCGGGA chr2L:3897668-3897788 75 9.85e-05 CGAATGGACC GAATGACA ACTGGACATT chr3R:20595536-20595656 23 9.85e-05 CAGGGATTGG GAATGACA TGCACTCATT chr2R:14088482-14088602 58 9.85e-05 cagacagaca gattgact gattgaTGGT chr3R:21023257-21023377 35 9.85e-05 TAGTCGATTC GATTGACT AACTGACGCG chr2R:20524746-20524866 24 1.18e-04 ATGGACAGCt gaatgaat gaacgaatga chrX:11527188-11527308 45 1.18e-04 ctggctgggt gaatgaat gaatgaatga chr3L:10205939-10206059 29 1.18e-04 GCAGTGCAGC GAATGAAT GACTGAATGA chr3L:12641367-12641487 40 1.18e-04 CAAGAtaaat gaatgaat gactgaatga chr2L:15024526-15024646 43 1.18e-04 atgaatgcga gaatgaat aactgaatga chrX:2969178-2969298 30 1.18e-04 atgaatgaat gaatgaat gaatgaatgT chrX:3404837-3404957 21 1.18e-04 TGGACACCat gaatgaat gaataaatga chr3R:24888522-24888642 60 1.35e-04 CAGCCTGACG AACTGACT AAGTGGCCAA chr3L:3744026-3744146 108 1.52e-04 ACTCGAACGT GACTGAAA TATCG chrX:4330929-4331049 76 1.69e-04 AATGGTGGCC GATTGACA AATGGACGGG chr2L:18641226-18641346 73 1.69e-04 TGGCCGTTCG GATTGACA CGGGGGGCTT chr3R:23336652-23336772 52 1.69e-04 catattgcct gattgaca gcggcagcag chr2L:10499198-10499318 80 2.27e-04 CGAATTGAGG GAATGAAA ACGATTAAAA chr3L:13240306-13240426 102 2.27e-04 TCGAAAACGA GAATGAAA ATCAAAGCGA chr3R:22288444-22288564 40 2.27e-04 CAGGCCGAGC gattgaat gagcgaatga chrX:1110324-1110444 43 2.27e-04 Ttggctcatt gattgaat gaccgactga chr2R:19130293-19130413 50 2.44e-04 AATATTGATC AACTGACA ACTTTCATAT chr3R:27400114-27400234 67 2.44e-04 tggatggacg aactgaca gatggacgga chr2R:14927713-14927833 39 2.44e-04 GGTGCATTAA AACTGACA AACTGAATGA chr3L:22416247-22416367 89 2.44e-04 CGAACGGGCA AACTGACA GACGGAAGCC chr3L:10780370-10780490 46 2.63e-04 AAACTtggct aactgaat gagtaaatga chr3R:5027736-5027856 46 2.63e-04 CTGAATGACC AACTGAAT GAGCGAATGA chr3L:12699595-12699715 109 3.02e-04 TTAAGTCCGA AATTGACT TCGA chr2R:12112398-12112518 27 3.02e-04 CTACTGGGCC AAATGACA AGCTGACAAA chr2R:22541356-22541476 41 3.35e-04 TTGATTGATG GATTGAAA CGCATGAATA chrX:8888309-8888429 17 3.35e-04 TGCCTTGGCC GATTGAAA ACGAGTGTGT chr2L:8423209-8423329 50 3.35e-04 tggctggacg gactgacg gatggattgg chr3L:18561739-18561859 38 3.91e-04 CTAACTGAGT GAATGACG TGCCCTGGCC chr2R:23255222-23255342 18 4.54e-04 TATGCGATTT AAATGAAA TTGGTTCATT chr2R:13916575-13916695 22 4.54e-04 CCAAACGCCC AAATGAAA ACAAACTCTA chr3L:8529057-8529177 19 4.54e-04 CACTAAATAC AAATGAAA CAGTCGGTCA chr2L:14316843-14316963 80 4.54e-04 TCAATCACTC AATTGAAT GCGACTCATT chr3L:21887748-21887868 62 4.84e-04 ctgatggaga cactgact gaccgactgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10008685-10008805 1.5e-05 73_[+4]_39 chr3R:13568480-13568600 1.5e-05 54_[+4]_58 chr3R:19452929-19453049 1.5e-05 73_[+4]_39 chrX:12846699-12846819 1.5e-05 25_[+4]_87 chrX:8083555-8083675 1.5e-05 49_[+4]_63 chr3R:21980261-21980381 1.5e-05 49_[+4]_63 chr3L:9252543-9252663 1.5e-05 50_[+4]_62 chrX:9734911-9735031 1.5e-05 72_[+4]_40 chrX:5057517-5057637 1.5e-05 104_[+4]_8 chr3R:15177731-15177851 1.5e-05 49_[+4]_63 chr2R:11034341-11034461 1.5e-05 88_[+4]_24 chr2L:13148506-13148626 1.5e-05 102_[+4]_10 chr3L:13035449-13035569 1.5e-05 85_[+4]_27 chrX:7583874-7583994 1.5e-05 27_[+4]_85 chr2L:16442722-16442842 1.5e-05 72_[+4]_40 chr3L:15896586-15896706 1.5e-05 58_[+4]_54 chrX:5487520-5487640 1.5e-05 32_[+4]_80 chrX:15630101-15630221 1.5e-05 63_[+4]_49 chrX:9478895-9479015 1.5e-05 69_[+4]_43 chr2R:20181743-20181863 1.5e-05 81_[+4]_31 chr3L:14821272-14821392 1.5e-05 49_[+4]_63 chr3R:23503650-23503770 1.5e-05 32_[+4]_80 chr3R:12290977-12291097 1.5e-05 53_[+4]_59 chrX:17494067-17494187 1.5e-05 38_[+4]_74 chr2R:19154352-19154472 3.2e-05 45_[+4]_67 chr3R:21631927-21632047 3.2e-05 70_[+4]_42 chr3R:13847589-13847709 3.2e-05 70_[+4]_42 chr2L:7955943-7956063 3.2e-05 73_[+4]_39 chrX:7776274-7776394 3.2e-05 64_[+4]_48 chr2L:20806758-20806878 3.2e-05 42_[+4]_70 chr2R:16442535-16442655 3.2e-05 84_[+4]_28 chr3L:7874646-7874766 3.2e-05 54_[+4]_58 chr3L:18769921-18770041 3.2e-05 45_[+4]_67 chr3R:16504680-16504800 3.2e-05 91_[+4]_21 chr3L:15634507-15634627 3.2e-05 37_[+4]_75 chr2L:18867433-18867553 4.8e-05 48_[+4]_64 chr3L:16028472-16028592 4.8e-05 69_[+4]_43 chr2R:23158357-23158477 4.8e-05 18_[+4]_94 chr3R:29508690-29508810 4.8e-05 65_[+4]_47 chrX:16698311-16698431 4.8e-05 23_[+4]_89 chr3R:22889441-22889561 6.5e-05 51_[+4]_61 chrX:5124660-5124780 6.5e-05 53_[+4]_59 chr3R:24018547-24018667 6.5e-05 52_[+4]_60 chrX:18662206-18662326 6.5e-05 80_[+4]_32 chr2R:19929231-19929351 6.5e-05 23_[+4]_89 chr3R:18088377-18088497 6.5e-05 45_[+4]_67 chrX:5114664-5114784 9.9e-05 31_[+4]_81 chr2R:21605795-21605915 9.9e-05 51_[+4]_61 chr3L:19335529-19335649 9.9e-05 49_[+4]_63 chr2R:8044549-8044669 9.9e-05 66_[+4]_46 chr3L:3921605-3921725 9.9e-05 89_[+4]_23 chr2L:3897668-3897788 9.9e-05 74_[+4]_38 chr3R:20595536-20595656 9.9e-05 22_[+4]_90 chr2R:14088482-14088602 9.9e-05 57_[+4]_55 chr3R:21023257-21023377 9.9e-05 34_[+4]_78 chr2R:20524746-20524866 0.00012 23_[+4]_89 chrX:11527188-11527308 0.00012 44_[+4]_68 chr3L:10205939-10206059 0.00012 28_[+4]_84 chr3L:12641367-12641487 0.00012 39_[+4]_73 chr2L:15024526-15024646 0.00012 42_[+4]_70 chrX:2969178-2969298 0.00012 29_[+4]_83 chrX:3404837-3404957 0.00012 20_[+4]_92 chr3R:24888522-24888642 0.00013 59_[+4]_53 chr3L:3744026-3744146 0.00015 107_[+4]_5 chrX:4330929-4331049 0.00017 75_[+4]_37 chr2L:18641226-18641346 0.00017 72_[+4]_40 chr3R:23336652-23336772 0.00017 51_[+4]_61 chr2L:10499198-10499318 0.00023 79_[+4]_33 chr3L:13240306-13240426 0.00023 101_[+4]_11 chr3R:22288444-22288564 0.00023 39_[+4]_73 chrX:1110324-1110444 0.00023 42_[+4]_70 chr2R:19130293-19130413 0.00024 49_[+4]_63 chr3R:27400114-27400234 0.00024 66_[+4]_46 chr2R:14927713-14927833 0.00024 38_[+4]_74 chr3L:22416247-22416367 0.00024 88_[+4]_24 chr3L:10780370-10780490 0.00026 45_[+4]_67 chr3R:5027736-5027856 0.00026 45_[+4]_67 chr3L:12699595-12699715 0.0003 108_[+4]_4 chr2R:12112398-12112518 0.0003 26_[+4]_86 chr2R:22541356-22541476 0.00033 40_[+4]_72 chrX:8888309-8888429 0.00033 16_[+4]_96 chr2L:8423209-8423329 0.00033 49_[+4]_63 chr3L:18561739-18561859 0.00039 37_[+4]_75 chr2R:23255222-23255342 0.00045 17_[+4]_95 chr2R:13916575-13916695 0.00045 21_[+4]_91 chr3L:8529057-8529177 0.00045 18_[+4]_94 chr2L:14316843-14316963 0.00045 79_[+4]_33 chr3L:21887748-21887868 0.00048 61_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAMTGACT width=8 seqs=88 chrX:10008685-10008805 ( 74) GACTGACT 1 chr3R:13568480-13568600 ( 55) GACTGACT 1 chr3R:19452929-19453049 ( 74) GACTGACT 1 chrX:12846699-12846819 ( 26) GACTGACT 1 chrX:8083555-8083675 ( 50) GACTGACT 1 chr3R:21980261-21980381 ( 50) GACTGACT 1 chr3L:9252543-9252663 ( 51) GACTGACT 1 chrX:9734911-9735031 ( 73) GACTGACT 1 chrX:5057517-5057637 ( 105) GACTGACT 1 chr3R:15177731-15177851 ( 50) GACTGACT 1 chr2R:11034341-11034461 ( 89) GACTGACT 1 chr2L:13148506-13148626 ( 103) GACTGACT 1 chr3L:13035449-13035569 ( 86) GACTGACT 1 chrX:7583874-7583994 ( 28) GACTGACT 1 chr2L:16442722-16442842 ( 73) GACTGACT 1 chr3L:15896586-15896706 ( 59) GACTGACT 1 chrX:5487520-5487640 ( 33) GACTGACT 1 chrX:15630101-15630221 ( 64) GACTGACT 1 chrX:9478895-9479015 ( 70) GACTGACT 1 chr2R:20181743-20181863 ( 82) GACTGACT 1 chr3L:14821272-14821392 ( 50) GACTGACT 1 chr3R:23503650-23503770 ( 33) GACTGACT 1 chr3R:12290977-12291097 ( 54) GACTGACT 1 chrX:17494067-17494187 ( 39) GACTGACT 1 chr2R:19154352-19154472 ( 46) GAATGACT 1 chr3R:21631927-21632047 ( 71) GAATGACT 1 chr3R:13847589-13847709 ( 71) GAATGACT 1 chr2L:7955943-7956063 ( 74) GAATGACT 1 chrX:7776274-7776394 ( 65) GAATGACT 1 chr2L:20806758-20806878 ( 43) GAATGACT 1 chr2R:16442535-16442655 ( 85) GAATGACT 1 chr3L:7874646-7874766 ( 55) GAATGACT 1 chr3L:18769921-18770041 ( 46) GAATGACT 1 chr3R:16504680-16504800 ( 92) GAATGACT 1 chr3L:15634507-15634627 ( 38) GAATGACT 1 chr2L:18867433-18867553 ( 49) GACTGACA 1 chr3L:16028472-16028592 ( 70) GACTGACA 1 chr2R:23158357-23158477 ( 19) GACTGACA 1 chr3R:29508690-29508810 ( 66) GACTGACA 1 chrX:16698311-16698431 ( 24) GACTGACA 1 chr3R:22889441-22889561 ( 52) GACTGAAT 1 chrX:5124660-5124780 ( 54) GACTGAAT 1 chr3R:24018547-24018667 ( 53) GACTGAAT 1 chrX:18662206-18662326 ( 81) GACTGAAT 1 chr2R:19929231-19929351 ( 24) GACTGAAT 1 chr3R:18088377-18088497 ( 46) GACTGAAT 1 chrX:5114664-5114784 ( 32) GAATGACA 1 chr2R:21605795-21605915 ( 52) GAATGACA 1 chr3L:19335529-19335649 ( 50) GATTGACT 1 chr2R:8044549-8044669 ( 67) GATTGACT 1 chr3L:3921605-3921725 ( 90) GAATGACA 1 chr2L:3897668-3897788 ( 75) GAATGACA 1 chr3R:20595536-20595656 ( 23) GAATGACA 1 chr2R:14088482-14088602 ( 58) GATTGACT 1 chr3R:21023257-21023377 ( 35) GATTGACT 1 chr2R:20524746-20524866 ( 24) GAATGAAT 1 chrX:11527188-11527308 ( 45) GAATGAAT 1 chr3L:10205939-10206059 ( 29) GAATGAAT 1 chr3L:12641367-12641487 ( 40) GAATGAAT 1 chr2L:15024526-15024646 ( 43) GAATGAAT 1 chrX:2969178-2969298 ( 30) GAATGAAT 1 chrX:3404837-3404957 ( 21) GAATGAAT 1 chr3R:24888522-24888642 ( 60) AACTGACT 1 chr3L:3744026-3744146 ( 108) GACTGAAA 1 chrX:4330929-4331049 ( 76) GATTGACA 1 chr2L:18641226-18641346 ( 73) GATTGACA 1 chr3R:23336652-23336772 ( 52) GATTGACA 1 chr2L:10499198-10499318 ( 80) GAATGAAA 1 chr3L:13240306-13240426 ( 102) GAATGAAA 1 chr3R:22288444-22288564 ( 40) GATTGAAT 1 chrX:1110324-1110444 ( 43) GATTGAAT 1 chr2R:19130293-19130413 ( 50) AACTGACA 1 chr3R:27400114-27400234 ( 67) AACTGACA 1 chr2R:14927713-14927833 ( 39) AACTGACA 1 chr3L:22416247-22416367 ( 89) AACTGACA 1 chr3L:10780370-10780490 ( 46) AACTGAAT 1 chr3R:5027736-5027856 ( 46) AACTGAAT 1 chr3L:12699595-12699715 ( 109) AATTGACT 1 chr2R:12112398-12112518 ( 27) AAATGACA 1 chr2R:22541356-22541476 ( 41) GATTGAAA 1 chrX:8888309-8888429 ( 17) GATTGAAA 1 chr2L:8423209-8423329 ( 50) GACTGACG 1 chr3L:18561739-18561859 ( 38) GAATGACG 1 chr2R:23255222-23255342 ( 18) AAATGAAA 1 chr2R:13916575-13916695 ( 22) AAATGAAA 1 chr3L:8529057-8529177 ( 19) AAATGAAA 1 chr2L:14316843-14316963 ( 80) AATTGAAT 1 chr3L:21887748-21887868 ( 62) CACTGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3508 E= 2.0e-043 -85 -438 183 -1310 190 -1310 -1310 -1310 35 111 -1310 -82 -1310 -1310 -1310 194 -1310 -1310 208 -1310 190 -1310 -1310 -1310 15 157 -1310 -1310 15 -1310 -338 139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 2.0e-043 0.147727 0.011364 0.840909 0.000000 1.000000 0.000000 0.000000 0.000000 0.340909 0.511364 0.000000 0.147727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.295455 0.704545 0.000000 0.000000 0.295455 0.000000 0.022727 0.681818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAMTGACT MEME-4 regular expression -------------------------------------------------------------------------------- GA[CA]TGA[CA][TA] -------------------------------------------------------------------------------- Time 25.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CMRTCMRT MEME-5 width = 8 sites = 99 llr = 768 E-value = 2.8e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :44::76: pos.-specific C a61:a31: probability G :15:::4: matrix T :::a:::a bits 2.1 * * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.2 * ** * Entropy 1.0 * *** * (11.2 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGTCAAT consensus AA CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11069039-11069159 34 1.51e-05 TGAGTGCCTA CCGTCAAT GCCGCTttgc chr2R:12483411-12483531 83 1.51e-05 ATCCATCCGC CCGTCAAT CTCTTTCACT chr2L:6340796-6340916 67 1.51e-05 TGTCGTCATT CCGTCAAT CGAACAGCAC chrX:17370880-17371000 66 1.51e-05 GAGGTATTGT CCGTCAAT CAATGCGCCA chr2R:21852217-21852337 52 1.51e-05 gcaagtcagt ccgtcaat ccgtcagtca chr2L:4356750-4356870 56 1.51e-05 gccagtcagt ccgtcaat cCGCCAATAT chr3L:1394581-1394701 41 1.51e-05 atcgcgcagt ccgtcaat cagtcagtca chr3R:25636238-25636358 62 2.85e-05 gtcagtcata ccgtcagt catttagcca chr3L:11469276-11469396 58 2.85e-05 Atcagtcagt ccgtcagt cagtcagtca chrX:7541252-7541372 46 2.85e-05 ATCCATCCCt ccgtcagt ttggccgtct chr3L:21819636-21819756 57 2.85e-05 gtcactcagt ccgtcagt cggtcagtta chr3R:11467951-11468071 47 2.85e-05 gtcagttagt ccgtcagt cagtcattca chrX:2969178-2969298 61 2.85e-05 ACTGTCACTT CCGTCAGT CGGGCCAAGC chr2R:10453738-10453858 70 2.85e-05 GTCTGTCAAT CCGTCAGT TAGCCAGTTG chr3R:30781255-30781375 60 2.85e-05 gtccgtcagt ccgtcagt ccatcagtAG chr3L:1357010-1357130 1 4.57e-05 . CCATCAAT CATGCAATCA chr3L:12260794-12260914 66 4.57e-05 TAccctccaa ccatcaat ccatccaacc chr3R:20603383-20603503 55 4.57e-05 TGTCGCCATT CCATCAAT TCCCATTTCT chr3R:10299298-10299418 29 4.57e-05 TAAccaccat ccatcaat ccatcaatcc chrX:6628458-6628578 100 4.57e-05 ATATGGGAAA CCATCAAT TCAATTGCCA chr3R:11316806-11316926 36 4.57e-05 GAccatcctt ccatcaat ccatccagcc chr2L:13095944-13096064 39 5.91e-05 CAAcagccat ccgtccat ccgtccagcc chr3L:21607929-21608049 57 5.91e-05 atccgtccat ccgtccat ctatccgcct chr2L:19258532-19258652 32 5.91e-05 gtccatccgt ccgtccat ctatccatct chr3R:17359509-17359629 27 5.91e-05 cgaccaccga ccGtccat ccatccatcc chrX:16136059-16136179 70 5.91e-05 atccaaccat ccgtccat ctgtccatct chr2R:9953591-9953711 48 5.91e-05 Ttccaaccgt ccgtccat ccatccatcc chrX:14948209-14948329 77 9.13e-05 AACGCGTAAA CAGTCAAT TTAAAAGCCA chr2R:23255222-23255342 64 9.13e-05 TCACTCAGTG CAGTCAAT GCATCAATTC chr3L:19239914-19240034 108 9.13e-05 GCCAAGTGAG CCATCAGT CGCCT chrX:21002058-21002178 64 9.13e-05 GTGCGTCAAT CCATCAGT TGGTCAGTTG chr3L:21857729-21857849 95 9.13e-05 gtcagtcagc cagtcaat cTAGAGGGGA chrX:5975250-5975370 88 9.13e-05 cacactcaat cagtcaat tagtcGACTC chr3R:20477684-20477804 64 9.13e-05 GCCAGCCATT CAGTCAAT GAGTCAGTTT chr2L:8892465-8892585 84 9.13e-05 gtcagtcagt cagtcaAT AAGGCAGTGA chr3L:8002572-8002692 39 9.13e-05 AGCAGCACTG CCAtcagt cagtcagtca chr3R:8280099-8280219 86 9.13e-05 ttcagtcagt cagtcaAT CATTCGTAAG chr2L:7807702-7807822 43 9.13e-05 ATGCATATAG CCATCAGT CAGGCACTCA chrX:20478813-20478933 59 9.13e-05 GCACGTGCCA CCATCAGT TTGTCAGTCG chrX:4474512-4474632 71 9.13e-05 AGCCATCACG CCATCAGT TGTTCAAGTC chr2R:23584448-23584568 38 9.13e-05 GTTCATCTGT CCATCAGT CAGTCAATAC chr2R:13916575-13916695 57 1.18e-04 GGGTCACCTt cagtcagt cagtcagtca chrX:3005095-3005215 64 1.18e-04 gccaaccagt cagtcagt cagtcagtca chr2R:23590764-23590884 81 1.18e-04 gtcagtcagt cagtcagt cagccagtTT chr3L:6456865-6456985 79 1.18e-04 atcagtgagt cagtcagt caAGCAGCAG chr3L:6451711-6451831 51 1.18e-04 gtcagtcagt cagtcagt TGAGATTCTG chr3L:9115793-9115913 81 1.18e-04 ttcagtcagt cagtcagt cagtcactca chr3R:15457525-15457645 30 1.18e-04 TATTTCACTt cagtcagt cagccagtca chr3R:7259729-7259849 71 1.18e-04 ctcaatcagg cagtcagt cagccagtca chr3L:10646051-10646171 52 1.18e-04 ttcagccaac cagtcagt cagccaatca chr2R:10771466-10771586 20 1.33e-04 GTGCTTCTGC Ccatccat ccagtcagtc chrX:19408389-19408509 35 1.33e-04 TCCCACccat ccatccat ccatccatcc chr2R:17251737-17251857 54 1.33e-04 atccatctaa ccatccat ccatccaGTT chr3R:4962005-4962125 42 1.33e-04 attcatccat ccatccat ccatccatcc chrX:9744972-9745092 85 1.33e-04 atccatccaa ccatccat cGATAAATCG chrX:19537446-19537566 84 1.33e-04 atccatccat ccatccat ccatccatcT chr3R:14174192-14174312 61 1.33e-04 atccatccat ccatccat ccatccatcc chrX:5189761-5189881 23 1.33e-04 actaattcat ccatccat tcattcgttc chr3R:7926493-7926613 41 1.33e-04 AGccatccat ccatccat ccatccatcc chrX:7462228-7462348 59 1.33e-04 atccacccat ccatccat ccacctatcc chr3R:17550124-17550244 42 1.33e-04 atccatccac ccatccat acatccagct chrX:10867831-10867951 55 1.33e-04 ctccatctat ccatccat ccctccaacc chr3L:14062841-14062961 56 1.33e-04 atctatctaa ccatccat ccatccatcc chr3R:31548905-31549025 81 1.33e-04 aaccatccga ccatccaT CCGCTGGATC chr2R:6980716-6980836 55 1.33e-04 agccatcaac ccatccat ccagccatca chr3L:19579485-19579605 71 1.33e-04 atctgtctat ccatccat tcatccatAC chrX:15128019-15128139 55 1.33e-04 atccatccaa ccatccat ccaaccatcc chrX:8888309-8888429 68 1.53e-04 GCAAAGCAAA CAATCAAT TGCACAATTA chrX:9074149-9074269 113 1.53e-04 CACCCGTGGG CAATCAAT chr3L:4375814-4375934 35 1.53e-04 GCCAGTCGTT CAATCAAT ACGGCAATGC chr3L:8550251-8550371 43 1.81e-04 ATCAATCTGT CAGTCCAT CAGCGAAACG chr3R:21947551-21947671 94 1.98e-04 CTAAGGTGCG CAATCAGT TCCTCGTTGG chr2R:8755804-8755924 83 2.12e-04 gtcactctgt cagtccgt ttgtcagtGC chr2R:15474898-15475018 50 2.12e-04 gtcagtcact cagtccgt cattcagtca chr2L:19089034-19089154 68 2.12e-04 ctcagtcagc cagtccgt catccagtca chr3R:21941023-21941143 96 2.44e-04 ttagccagCG CCCTCAAT GCACGCTTTA chr3R:13087127-13087247 61 2.44e-04 gtctctcagt ccctcaat ctgccagtcg chr3R:20595536-20595656 41 2.73e-04 TGCACTCATT CAATCCGT CCCTCAATCA chr3L:12699595-12699715 29 2.86e-04 ATCCTGTCCG CCCTCCAT ACATCCGTAC chr2L:6176502-6176622 1 3.32e-04 . CCGTCACT CACCCACCCA chr2R:21605795-21605915 87 3.32e-04 ATCCGCTCAG CACTCAAT TTTGTCAAAT chr3L:8529057-8529177 31 3.32e-04 ATGAAACAGT CGGTCAAT GGCGGCAGCA chr2L:5348730-5348850 41 3.32e-04 CCGCCCACCA CGGTCAAT ACTTCAATTC chr2L:8721146-8721266 94 3.32e-04 gttagtcagt cggtcaat catccgtcCA chr2L:8423209-8423329 21 3.32e-04 GGAAACTTTC CACTCAAT TGAGAGGAgg chr2R:23162601-23162721 42 3.44e-04 GCACCCATAA ccctccgt cctgccatcc chr2L:19785309-19785429 34 3.44e-04 ggcagttccc ccctccgt tcgacattca chrX:14531086-14531206 39 3.72e-04 gtcagccatt cggtcagt cattccgttg chrX:7526922-7527042 95 3.72e-04 tcactcaggg cggtcagt GAAATCGGTA chr2L:17763312-17763432 51 3.72e-04 TCcattcaat cactcagt tagtcagtcg chr3R:8224865-8224985 70 3.72e-04 tccagtcagt cactcagt tagtcattca chr3L:3454569-3454689 74 3.72e-04 gtcactcatt cactcagt cagtcagtca chr2L:1547999-1548119 36 4.45e-04 gtcagttagt cactccat cgcagtcatt chr3L:4448688-4448808 109 4.75e-04 GGGGCATTAA CAGTCACT TTTG chr3L:14712632-14712752 71 5.00e-04 ttcaCTCACC CGGTCCGT ACAACAAAAC chrX:3105617-3105737 9 5.46e-04 TGACTATC CAATCACT TACTCcactc chr2L:14316843-14316963 71 5.46e-04 GTCAGTGAGT CAATCACT CAATTGAATG chr3L:13658839-13658959 80 5.73e-04 CTCATTAGTT CAGTCCCT GACATTGTCA chr2L:7955943-7956063 111 7.22e-04 TTGGCAGCTG CCGCCAGT CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11069039-11069159 1.5e-05 33_[+5]_79 chr2R:12483411-12483531 1.5e-05 82_[+5]_30 chr2L:6340796-6340916 1.5e-05 66_[+5]_46 chrX:17370880-17371000 1.5e-05 65_[+5]_47 chr2R:21852217-21852337 1.5e-05 51_[+5]_61 chr2L:4356750-4356870 1.5e-05 55_[+5]_57 chr3L:1394581-1394701 1.5e-05 40_[+5]_72 chr3R:25636238-25636358 2.9e-05 61_[+5]_51 chr3L:11469276-11469396 2.9e-05 57_[+5]_55 chrX:7541252-7541372 2.9e-05 45_[+5]_67 chr3L:21819636-21819756 2.9e-05 56_[+5]_56 chr3R:11467951-11468071 2.9e-05 46_[+5]_66 chrX:2969178-2969298 2.9e-05 60_[+5]_52 chr2R:10453738-10453858 2.9e-05 69_[+5]_43 chr3R:30781255-30781375 2.9e-05 59_[+5]_53 chr3L:1357010-1357130 4.6e-05 [+5]_112 chr3L:12260794-12260914 4.6e-05 65_[+5]_47 chr3R:20603383-20603503 4.6e-05 54_[+5]_58 chr3R:10299298-10299418 4.6e-05 28_[+5]_84 chrX:6628458-6628578 4.6e-05 99_[+5]_13 chr3R:11316806-11316926 4.6e-05 35_[+5]_77 chr2L:13095944-13096064 5.9e-05 38_[+5]_74 chr3L:21607929-21608049 5.9e-05 56_[+5]_56 chr2L:19258532-19258652 5.9e-05 31_[+5]_81 chr3R:17359509-17359629 5.9e-05 26_[+5]_86 chrX:16136059-16136179 5.9e-05 69_[+5]_43 chr2R:9953591-9953711 5.9e-05 47_[+5]_65 chrX:14948209-14948329 9.1e-05 76_[+5]_36 chr2R:23255222-23255342 9.1e-05 63_[+5]_49 chr3L:19239914-19240034 9.1e-05 107_[+5]_5 chrX:21002058-21002178 9.1e-05 63_[+5]_49 chr3L:21857729-21857849 9.1e-05 94_[+5]_18 chrX:5975250-5975370 9.1e-05 87_[+5]_25 chr3R:20477684-20477804 9.1e-05 63_[+5]_49 chr2L:8892465-8892585 9.1e-05 83_[+5]_29 chr3L:8002572-8002692 9.1e-05 38_[+5]_74 chr3R:8280099-8280219 9.1e-05 85_[+5]_27 chr2L:7807702-7807822 9.1e-05 42_[+5]_70 chrX:20478813-20478933 9.1e-05 58_[+5]_54 chrX:4474512-4474632 9.1e-05 70_[+5]_42 chr2R:23584448-23584568 9.1e-05 37_[+5]_75 chr2R:13916575-13916695 0.00012 56_[+5]_56 chrX:3005095-3005215 0.00012 63_[+5]_49 chr2R:23590764-23590884 0.00012 80_[+5]_32 chr3L:6456865-6456985 0.00012 78_[+5]_34 chr3L:6451711-6451831 0.00012 50_[+5]_62 chr3L:9115793-9115913 0.00012 80_[+5]_32 chr3R:15457525-15457645 0.00012 29_[+5]_83 chr3R:7259729-7259849 0.00012 70_[+5]_42 chr3L:10646051-10646171 0.00012 51_[+5]_61 chr2R:10771466-10771586 0.00013 19_[+5]_93 chrX:19408389-19408509 0.00013 34_[+5]_78 chr2R:17251737-17251857 0.00013 53_[+5]_59 chr3R:4962005-4962125 0.00013 41_[+5]_71 chrX:9744972-9745092 0.00013 84_[+5]_28 chrX:19537446-19537566 0.00013 83_[+5]_29 chr3R:14174192-14174312 0.00013 60_[+5]_52 chrX:5189761-5189881 0.00013 22_[+5]_90 chr3R:7926493-7926613 0.00013 40_[+5]_72 chrX:7462228-7462348 0.00013 58_[+5]_54 chr3R:17550124-17550244 0.00013 41_[+5]_71 chrX:10867831-10867951 0.00013 54_[+5]_58 chr3L:14062841-14062961 0.00013 55_[+5]_57 chr3R:31548905-31549025 0.00013 80_[+5]_32 chr2R:6980716-6980836 0.00013 54_[+5]_58 chr3L:19579485-19579605 0.00013 70_[+5]_42 chrX:15128019-15128139 0.00013 54_[+5]_58 chrX:8888309-8888429 0.00015 67_[+5]_45 chrX:9074149-9074269 0.00015 112_[+5] chr3L:4375814-4375934 0.00015 34_[+5]_78 chr3L:8550251-8550371 0.00018 42_[+5]_70 chr3R:21947551-21947671 0.0002 93_[+5]_19 chr2R:8755804-8755924 0.00021 82_[+5]_30 chr2R:15474898-15475018 0.00021 49_[+5]_63 chr2L:19089034-19089154 0.00021 67_[+5]_45 chr3R:21941023-21941143 0.00024 95_[+5]_17 chr3R:13087127-13087247 0.00024 60_[+5]_52 chr3R:20595536-20595656 0.00027 40_[+5]_72 chr3L:12699595-12699715 0.00029 28_[+5]_84 chr2L:6176502-6176622 0.00033 [+5]_112 chr2R:21605795-21605915 0.00033 86_[+5]_26 chr3L:8529057-8529177 0.00033 30_[+5]_82 chr2L:5348730-5348850 0.00033 40_[+5]_72 chr2L:8721146-8721266 0.00033 93_[+5]_19 chr2L:8423209-8423329 0.00033 20_[+5]_92 chr2R:23162601-23162721 0.00034 41_[+5]_71 chr2L:19785309-19785429 0.00034 33_[+5]_79 chrX:14531086-14531206 0.00037 38_[+5]_74 chrX:7526922-7527042 0.00037 94_[+5]_18 chr2L:17763312-17763432 0.00037 50_[+5]_62 chr3R:8224865-8224985 0.00037 69_[+5]_43 chr3L:3454569-3454689 0.00037 73_[+5]_39 chr2L:1547999-1548119 0.00044 35_[+5]_77 chr3L:4448688-4448808 0.00048 108_[+5]_4 chr3L:14712632-14712752 0.0005 70_[+5]_42 chrX:3105617-3105737 0.00055 8_[+5]_104 chr2L:14316843-14316963 0.00055 70_[+5]_42 chr3L:13658839-13658959 0.00057 79_[+5]_33 chr2L:7955943-7956063 0.00072 110_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMRTCMRT width=8 seqs=99 chr2L:11069039-11069159 ( 34) CCGTCAAT 1 chr2R:12483411-12483531 ( 83) CCGTCAAT 1 chr2L:6340796-6340916 ( 67) CCGTCAAT 1 chrX:17370880-17371000 ( 66) CCGTCAAT 1 chr2R:21852217-21852337 ( 52) CCGTCAAT 1 chr2L:4356750-4356870 ( 56) CCGTCAAT 1 chr3L:1394581-1394701 ( 41) CCGTCAAT 1 chr3R:25636238-25636358 ( 62) CCGTCAGT 1 chr3L:11469276-11469396 ( 58) CCGTCAGT 1 chrX:7541252-7541372 ( 46) CCGTCAGT 1 chr3L:21819636-21819756 ( 57) CCGTCAGT 1 chr3R:11467951-11468071 ( 47) CCGTCAGT 1 chrX:2969178-2969298 ( 61) CCGTCAGT 1 chr2R:10453738-10453858 ( 70) CCGTCAGT 1 chr3R:30781255-30781375 ( 60) CCGTCAGT 1 chr3L:1357010-1357130 ( 1) CCATCAAT 1 chr3L:12260794-12260914 ( 66) CCATCAAT 1 chr3R:20603383-20603503 ( 55) CCATCAAT 1 chr3R:10299298-10299418 ( 29) CCATCAAT 1 chrX:6628458-6628578 ( 100) CCATCAAT 1 chr3R:11316806-11316926 ( 36) CCATCAAT 1 chr2L:13095944-13096064 ( 39) CCGTCCAT 1 chr3L:21607929-21608049 ( 57) CCGTCCAT 1 chr2L:19258532-19258652 ( 32) CCGTCCAT 1 chr3R:17359509-17359629 ( 27) CCGTCCAT 1 chrX:16136059-16136179 ( 70) CCGTCCAT 1 chr2R:9953591-9953711 ( 48) CCGTCCAT 1 chrX:14948209-14948329 ( 77) CAGTCAAT 1 chr2R:23255222-23255342 ( 64) CAGTCAAT 1 chr3L:19239914-19240034 ( 108) CCATCAGT 1 chrX:21002058-21002178 ( 64) CCATCAGT 1 chr3L:21857729-21857849 ( 95) CAGTCAAT 1 chrX:5975250-5975370 ( 88) CAGTCAAT 1 chr3R:20477684-20477804 ( 64) CAGTCAAT 1 chr2L:8892465-8892585 ( 84) CAGTCAAT 1 chr3L:8002572-8002692 ( 39) CCATCAGT 1 chr3R:8280099-8280219 ( 86) CAGTCAAT 1 chr2L:7807702-7807822 ( 43) CCATCAGT 1 chrX:20478813-20478933 ( 59) CCATCAGT 1 chrX:4474512-4474632 ( 71) CCATCAGT 1 chr2R:23584448-23584568 ( 38) CCATCAGT 1 chr2R:13916575-13916695 ( 57) CAGTCAGT 1 chrX:3005095-3005215 ( 64) CAGTCAGT 1 chr2R:23590764-23590884 ( 81) CAGTCAGT 1 chr3L:6456865-6456985 ( 79) CAGTCAGT 1 chr3L:6451711-6451831 ( 51) CAGTCAGT 1 chr3L:9115793-9115913 ( 81) CAGTCAGT 1 chr3R:15457525-15457645 ( 30) CAGTCAGT 1 chr3R:7259729-7259849 ( 71) CAGTCAGT 1 chr3L:10646051-10646171 ( 52) CAGTCAGT 1 chr2R:10771466-10771586 ( 20) CCATCCAT 1 chrX:19408389-19408509 ( 35) CCATCCAT 1 chr2R:17251737-17251857 ( 54) CCATCCAT 1 chr3R:4962005-4962125 ( 42) CCATCCAT 1 chrX:9744972-9745092 ( 85) CCATCCAT 1 chrX:19537446-19537566 ( 84) CCATCCAT 1 chr3R:14174192-14174312 ( 61) CCATCCAT 1 chrX:5189761-5189881 ( 23) CCATCCAT 1 chr3R:7926493-7926613 ( 41) CCATCCAT 1 chrX:7462228-7462348 ( 59) CCATCCAT 1 chr3R:17550124-17550244 ( 42) CCATCCAT 1 chrX:10867831-10867951 ( 55) CCATCCAT 1 chr3L:14062841-14062961 ( 56) CCATCCAT 1 chr3R:31548905-31549025 ( 81) CCATCCAT 1 chr2R:6980716-6980836 ( 55) CCATCCAT 1 chr3L:19579485-19579605 ( 71) CCATCCAT 1 chrX:15128019-15128139 ( 55) CCATCCAT 1 chrX:8888309-8888429 ( 68) CAATCAAT 1 chrX:9074149-9074269 ( 113) CAATCAAT 1 chr3L:4375814-4375934 ( 35) CAATCAAT 1 chr3L:8550251-8550371 ( 43) CAGTCCAT 1 chr3R:21947551-21947671 ( 94) CAATCAGT 1 chr2R:8755804-8755924 ( 83) CAGTCCGT 1 chr2R:15474898-15475018 ( 50) CAGTCCGT 1 chr2L:19089034-19089154 ( 68) CAGTCCGT 1 chr3R:21941023-21941143 ( 96) CCCTCAAT 1 chr3R:13087127-13087247 ( 61) CCCTCAAT 1 chr3R:20595536-20595656 ( 41) CAATCCGT 1 chr3L:12699595-12699715 ( 29) CCCTCCAT 1 chr2L:6176502-6176622 ( 1) CCGTCACT 1 chr2R:21605795-21605915 ( 87) CACTCAAT 1 chr3L:8529057-8529177 ( 31) CGGTCAAT 1 chr2L:5348730-5348850 ( 41) CGGTCAAT 1 chr2L:8721146-8721266 ( 94) CGGTCAAT 1 chr2L:8423209-8423329 ( 21) CACTCAAT 1 chr2R:23162601-23162721 ( 42) CCCTCCGT 1 chr2L:19785309-19785429 ( 34) CCCTCCGT 1 chrX:14531086-14531206 ( 39) CGGTCAGT 1 chrX:7526922-7527042 ( 95) CGGTCAGT 1 chr2L:17763312-17763432 ( 51) CACTCAGT 1 chr3R:8224865-8224985 ( 70) CACTCAGT 1 chr3L:3454569-3454689 ( 74) CACTCAGT 1 chr2L:1547999-1548119 ( 36) CACTCCAT 1 chr3L:4448688-4448808 ( 109) CAGTCACT 1 chr3L:14712632-14712752 ( 71) CGGTCCGT 1 chrX:3105617-3105737 ( 9) CAATCACT 1 chr2L:14316843-14316963 ( 71) CAATCACT 1 chr3L:13658839-13658959 ( 80) CAGTCCCT 1 chr2L:7955943-7956063 ( 111) CCGCCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.27902 E= 2.8e-037 -1327 208 -1327 -1327 40 131 -196 -1327 48 -109 113 -1327 -1327 -455 -1327 193 -1327 208 -1327 -1327 130 54 -1327 -1327 108 -223 70 -1327 -1327 -1327 -1327 194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 2.8e-037 0.000000 1.000000 0.000000 0.000000 0.353535 0.585859 0.060606 0.000000 0.373737 0.111111 0.515152 0.000000 0.000000 0.010101 0.000000 0.989899 0.000000 1.000000 0.000000 0.000000 0.656566 0.343434 0.000000 0.000000 0.565657 0.050505 0.383838 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRTCMRT MEME-5 regular expression -------------------------------------------------------------------------------- C[CA][GA]TC[AC][AG]T -------------------------------------------------------------------------------- Time 30.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13471890-13472010 3.44e-04 33_[+3(9.86e-05)]_79 chr3L:15634507-15634627 8.60e-04 37_[+4(3.21e-05)]_24_[+4(1.51e-05)]_\ 43 chr3R:30781255-30781375 1.16e-02 35_[+5(5.91e-05)]_8_[+5(2.85e-05)]_\ [+5(2.85e-05)]_[+5(9.13e-05)]_45 chr3L:10788725-10788845 6.69e-01 120 chrX:19287923-19288043 9.82e-01 120 chr3R:23336652-23336772 1.28e-02 31_[+4(3.21e-05)]_10_[+1(4.86e-05)]_\ 63 chr3L:16886308-16886428 1.87e-05 49_[+1(1.51e-05)]_6_[+4(4.75e-05)]_\ 49 chrX:9291409-9291529 9.87e-01 120 chr2L:8423209-8423329 4.40e-04 1_[+1(4.86e-05)]_111 chrX:17494067-17494187 2.41e-04 38_[+4(1.51e-05)]_6_[+1(9.92e-05)]_\ 6_[+4(1.51e-05)]_4_[+4(1.51e-05)]_34 chr3R:16504680-16504800 2.65e-03 42_[+1(3.21e-05)]_41_[+4(3.21e-05)]_\ 21 chr3R:29518062-29518182 1.70e-03 23_[+3(1.83e-05)]_[+3(1.83e-05)]_\ [+3(1.83e-05)]_28_[+3(1.83e-05)]_37 chr3L:18769921-18770041 3.00e-03 9_[+4(1.51e-05)]_[+4(1.51e-05)]_5_\ [+1(8.21e-05)]_7_[+4(3.21e-05)]_67 chrX:15128019-15128139 1.99e-03 41_[+3(9.86e-05)]_8_[+3(9.86e-05)]_\ 4_[+3(9.86e-05)]_4_[+3(9.86e-05)]_31 chr3L:19579485-19579605 1.82e-03 29_[+3(9.86e-05)]_4_[+3(3.50e-05)]_\ [+3(3.50e-05)]_16_[+3(3.50e-05)]_39 chrX:3404837-3404957 2.05e-02 120 chr2R:9953591-9953711 3.54e-03 47_[+5(5.91e-05)]_3_[+3(9.86e-05)]_\ [+3(9.86e-05)]_46 chr3L:4375814-4375934 3.30e-02 120 chr2L:19785309-19785429 1.16e-04 13_[+2(1.51e-05)]_36_[+2(1.51e-05)]_\ [+2(6.20e-05)]_47 chr3L:10646051-10646171 5.10e-04 37_[+3(6.67e-05)]_6_[+2(1.51e-05)]_\ 8_[+2(1.51e-05)]_8_[+2(1.51e-05)]_29 chrX:16698311-16698431 1.59e-04 23_[+4(4.75e-05)]_10_[+1(4.86e-05)]_\ 71 chr3R:21023257-21023377 2.40e-02 34_[+4(9.85e-05)]_23_[+1(4.86e-05)]_\ 47 chr3L:20857748-20857868 1.11e-02 120 chrX:1110324-1110444 5.81e-04 54_[+4(1.51e-05)]_58 chr2R:23584448-23584568 9.10e-04 41_[+2(1.51e-05)]_16_[+2(1.51e-05)]_\ [+2(1.51e-05)]_12_[+2(1.51e-05)]_[+2(1.51e-05)]_11 chr2R:19606181-19606301 4.37e-03 106_[+4(1.51e-05)]_6 chrX:16136059-16136179 2.79e-03 36_[+3(9.86e-05)]_25_[+5(5.91e-05)]_\ 28_[+3(9.86e-05)]_7 chr2L:20352339-20352459 1.21e-01 120 chr2R:6980716-6980836 2.70e-03 37_[+3(9.86e-05)]_12_[+3(9.86e-05)]_\ 1_[+5(4.57e-05)]_46 chr3R:29508690-29508810 1.79e-03 29_[+4(1.51e-05)]_28_[+4(4.75e-05)]_\ 47 chr2R:14088482-14088602 2.13e-03 33_[+4(1.51e-05)]_[+4(4.75e-05)]_14_\ [+1(4.86e-05)]_49 chrX:9740408-9740528 1.52e-01 120 chr3R:12290977-12291097 8.14e-04 53_[+4(1.51e-05)]_2_[+1(1.51e-05)]_\ [+1(9.92e-05)]_6_[+4(1.51e-05)]_27 chr2R:12766205-12766325 2.38e-04 71_[+2(1.51e-05)]_20_[+2(3.17e-05)]_\ 13 chrX:3151558-3151678 9.30e-01 120 chr3L:3454569-3454689 1.13e-06 77_[+2(1.51e-05)]_8_[+2(1.51e-05)]_\ 19 chr3L:13658839-13658959 4.45e-03 53_[+3(5.16e-05)]_59 chrX:4474512-4474632 9.32e-02 70_[+5(9.13e-05)]_42 chr2L:18641226-18641346 2.07e-02 120 chrX:20478813-20478933 8.08e-02 58_[+5(9.13e-05)]_54 chr3R:22288444-22288564 6.28e-03 120 chr2L:8721146-8721266 1.01e-03 69_[+2(1.51e-05)]_[+2(1.51e-05)]_35 chr3R:23503650-23503770 2.67e-03 10_[+1(1.51e-05)]_14_[+4(1.51e-05)]_\ [+4(1.51e-05)]_8_[+4(4.75e-05)]_10_[+1(1.51e-05)]_38 chr3L:14821272-14821392 1.58e-04 33_[+4(1.51e-05)]_4_[+4(1.51e-05)]_\ 16_[+4(3.21e-05)]_43 chr2L:14316843-14316963 1.32e-03 120 chr3L:7874646-7874766 7.60e-04 54_[+4(3.21e-05)]_4_[+4(1.51e-05)]_\ 46 chr3R:31548905-31549025 7.05e-03 120 chr2L:14628905-14629025 1.43e-02 120 chr3L:1394581-1394701 2.10e-04 40_[+5(1.51e-05)]_[+2(1.51e-05)]_\ [+2(1.51e-05)]_56 chr2L:7807702-7807822 2.79e-02 42_[+5(9.13e-05)]_70 chr2R:20181743-20181863 4.11e-03 15_[+4(1.51e-05)]_30_[+4(9.85e-05)]_\ 20_[+4(1.51e-05)]_31 chr2R:16442535-16442655 6.98e-04 38_[+1(3.21e-05)]_6_[+4(1.51e-05)]_\ [+4(1.51e-05)]_16_[+4(3.21e-05)]_2_[+1(6.56e-05)]_18 chr2R:12771740-12771860 1.21e-02 120 chr2R:10453738-10453858 1.44e-02 69_[+5(2.85e-05)]_43 chr3R:8449082-8449202 9.41e-01 120 chr3R:8224865-8224985 3.70e-04 1_[+2(6.20e-05)]_[+2(6.20e-05)]_16_\ [+2(4.83e-05)]_20_[+2(1.51e-05)]_10_[+3(5.16e-05)]_33 chr3R:7259729-7259849 5.61e-04 46_[+2(1.51e-05)]_16_[+2(1.51e-05)]_\ 4_[+2(1.51e-05)]_30 chr3R:11316806-11316926 1.65e-03 35_[+5(4.57e-05)]_11_[+3(9.86e-05)]_\ 12_[+3(9.86e-05)]_38 chr3R:15457525-15457645 8.10e-04 29_[+2(1.51e-05)]_4_[+2(1.51e-05)]_\ [+2(1.51e-05)]_12_[+2(1.51e-05)]_43 chrX:9708227-9708347 1.01e-02 120 chr3L:9115793-9115913 1.94e-04 19_[+3(8.34e-05)]_45_[+2(1.51e-05)]_\ [+2(1.51e-05)]_8_[+2(1.51e-05)]_16 chrX:2969178-2969298 6.53e-05 60_[+5(2.85e-05)]_52 chrX:9478895-9479015 2.13e-03 9_[+4(1.51e-05)]_2_[+1(3.21e-05)]_\ 16_[+1(1.51e-05)]_[+1(1.51e-05)]_[+1(1.51e-05)]_2_[+4(1.51e-05)]_43 chr3R:29899774-29899894 7.44e-02 120 chr2L:8098070-8098190 1.03e-02 120 chr3R:17359509-17359629 2.31e-03 26_[+5(5.91e-05)]_3_[+3(9.86e-05)]_\ 8_[+3(9.86e-05)]_59 chr3L:14062841-14062961 4.70e-03 58_[+3(9.86e-05)]_[+3(9.86e-05)]_46 chr2L:1547999-1548119 5.80e-06 45_[+2(3.17e-05)]_6_[+3(1.83e-05)]_\ 10_[+2(1.51e-05)]_35 chr2L:19089034-19089154 1.73e-04 47_[+2(4.83e-05)]_8_[+2(6.20e-05)]_\ 16_[+2(1.51e-05)]_10_[+3(1.83e-05)]_7 chr3L:19076115-19076235 1.00e-04 79_[+1(1.51e-05)]_33 chr3L:6451711-6451831 2.58e-05 18_[+2(3.17e-05)]_8_[+2(1.51e-05)]_\ [+2(1.51e-05)]_[+2(1.51e-05)]_62 chr3R:11467951-11468071 8.17e-05 30_[+2(1.51e-05)]_12_[+2(1.51e-05)]_\ [+2(8.03e-05)]_54 chr3R:18088377-18088497 4.61e-03 47_[+1(3.21e-05)]_20_[+1(3.21e-05)]_\ 2_[+4(4.75e-05)]_27 chr2L:17763312-17763432 1.53e-03 40_[+3(3.50e-05)]_30_[+2(8.03e-05)]_\ 34 chr2L:5348730-5348850 5.18e-01 120 chr3R:5027736-5027856 4.79e-03 35_[+1(3.21e-05)]_4_[+1(3.21e-05)]_\ 65 chr3L:21819636-21819756 2.63e-05 56_[+5(2.85e-05)]_12_[+2(1.51e-05)]_\ 8_[+2(1.51e-05)]_20 chrX:10867831-10867951 6.28e-04 33_[+3(9.86e-05)]_12_[+3(9.86e-05)]_\ 16_[+3(9.86e-05)]_2_[+2(1.51e-05)]_25 chr3R:17550124-17550244 4.25e-03 28_[+3(9.86e-05)]_84 chrX:19875768-19875888 8.72e-01 120 chr3R:20595536-20595656 7.20e-04 22_[+4(9.85e-05)]_90 chr2R:19929231-19929351 4.89e-04 25_[+1(3.21e-05)]_14_[+4(1.51e-05)]_\ [+4(1.51e-05)]_57 chrX:7541252-7541372 5.65e-05 45_[+5(2.85e-05)]_12_[+2(1.51e-05)]_\ 47 chrX:15630101-15630221 1.60e-02 37_[+1(9.92e-05)]_[+1(9.92e-05)]_\ [+1(9.92e-05)]_2_[+4(1.51e-05)]_14_[+1(9.92e-05)]_27 chr2R:21574326-21574446 2.47e-03 78_[+5(4.57e-05)]_34 chr2R:14426588-14426708 4.06e-03 120 chr2L:18914968-18915088 1.50e-02 120 chr2R:15474898-15475018 1.18e-04 61_[+2(1.51e-05)]_51 chr3R:13417206-13417326 5.13e-01 120 chrX:7462228-7462348 3.85e-04 33_[+3(8.34e-05)]_16_[+3(9.86e-05)]_\ 17_[+3(1.83e-05)]_30 chr2L:20806758-20806878 1.10e-02 32_[+1(3.21e-05)]_2_[+4(3.21e-05)]_\ 70 chr2L:18526107-18526227 1.12e-04 49_[+2(4.83e-05)]_8_[+2(1.51e-05)]_\ [+5(9.13e-05)]_39 chrX:5487520-5487640 8.75e-04 20_[+4(1.51e-05)]_[+4(1.51e-05)]_\ [+4(1.51e-05)]_2_[+1(1.51e-05)]_2_[+4(1.51e-05)]_56 chr3L:22416247-22416367 2.35e-01 120 chr3R:7926493-7926613 1.59e-03 23_[+3(3.50e-05)]_4_[+3(9.86e-05)]_\ [+3(9.86e-05)]_[+3(9.86e-05)]_61 chr2R:12112398-12112518 6.62e-03 72_[+1(9.92e-05)]_40 chr2L:3897668-3897788 5.39e-02 74_[+4(9.85e-05)]_38 chr3L:21887748-21887868 2.48e-03 63_[+1(1.51e-05)]_14_[+4(1.51e-05)]_\ 27 chr3R:8280099-8280219 3.57e-04 61_[+2(1.51e-05)]_[+2(3.17e-05)]_\ [+2(1.51e-05)]_[+5(9.13e-05)]_27 chr3R:19323677-19323797 9.38e-04 33_[+3(1.83e-05)]_[+3(1.83e-05)]_\ [+3(1.83e-05)]_63 chr3L:15896586-15896706 2.98e-03 6_[+4(1.51e-05)]_2_[+1(3.21e-05)]_\ 18_[+4(1.51e-05)]_8_[+4(1.51e-05)]_8_[+4(1.51e-05)]_4_[+4(3.21e-05)]_26 chr2L:16442722-16442842 5.48e-04 40_[+4(1.51e-05)]_4_[+4(3.21e-05)]_\ 12_[+4(1.51e-05)]_12_[+1(6.56e-05)]_20 chr2R:20184794-20184914 5.02e-01 120 chrX:6628458-6628578 6.18e-03 99_[+5(4.57e-05)]_13 chr3L:4448688-4448808 3.17e-03 120 chr3L:8002572-8002692 1.03e-04 14_[+3(1.83e-05)]_20_[+2(1.51e-05)]_\ [+2(1.51e-05)]_20_[+2(1.51e-05)]_34 chr3L:6456865-6456985 3.15e-04 46_[+2(3.17e-05)]_[+2(1.51e-05)]_16_\ [+2(1.51e-05)]_34 chr3L:3921605-3921725 3.71e-01 89_[+4(9.85e-05)]_23 chr3L:8362738-8362858 9.98e-04 49_[+2(1.51e-05)]_63 chr3L:8529057-8529177 7.39e-04 57_[+1(8.21e-05)]_55 chr3R:7866949-7867069 1.31e-01 120 chr2R:16967372-16967492 1.22e-05 53_[+3(1.83e-05)]_51_[+4(9.85e-05)] chr3R:21947551-21947671 8.85e-04 45_[+2(1.51e-05)]_67 chr3R:10299298-10299418 9.80e-04 28_[+5(4.57e-05)]_[+5(4.57e-05)]_3_\ [+3(3.50e-05)]_65 chr2R:14927713-14927833 4.85e-03 48_[+1(3.21e-05)]_64 chr3R:27371668-27371788 9.54e-01 120 chrX:9064181-9064301 1.16e-01 3_[+3(6.67e-05)]_109 chr2L:19258532-19258652 4.68e-02 19_[+5(5.91e-05)]_4_[+5(5.91e-05)]_\ 81 chr3L:12227388-12227508 9.12e-01 120 chr3L:3744026-3744146 5.63e-02 120 chr2L:15024526-15024646 1.01e-02 52_[+1(3.21e-05)]_60 chr2R:8044549-8044669 1.72e-02 28_[+1(8.21e-05)]_4_[+1(4.86e-05)]_\ 16_[+1(4.86e-05)]_[+1(4.86e-05)]_[+1(4.86e-05)]_32 chrX:7583874-7583994 3.88e-03 27_[+4(1.51e-05)]_44_[+4(6.45e-05)]_\ 2_[+1(1.51e-05)]_23 chr2L:2664021-2664141 3.19e-01 120 chr3L:13035449-13035569 1.30e-03 22_[+1(4.86e-05)]_25_[+1(4.86e-05)]_\ 22_[+4(1.51e-05)]_27 chrX:7776274-7776394 3.10e-03 22_[+1(3.21e-05)]_34_[+4(3.21e-05)]_\ 48 chr2L:4356750-4356870 1.19e-04 47_[+2(1.51e-05)]_[+5(1.51e-05)]_57 chr2L:14631459-14631579 3.46e-06 22_[+2(1.51e-05)]_[+2(4.83e-05)]_7_\ [+3(3.50e-05)]_67 chr2L:13148506-13148626 3.38e-03 60_[+4(1.51e-05)]_6_[+1(1.51e-05)]_\ 2_[+4(1.51e-05)]_10_[+4(1.51e-05)]_10 chrX:9074149-9074269 3.69e-02 120 chr2R:11034341-11034461 3.97e-03 84_[+4(1.51e-05)]_[+4(1.51e-05)]_\ [+4(1.51e-05)]_12 chr3L:12641367-12641487 8.20e-03 43_[+4(3.21e-05)]_69 chr3R:5310690-5310810 6.16e-02 59_[+1(1.51e-05)]_53 chr2L:8892465-8892585 3.64e-04 27_[+2(6.20e-05)]_8_[+2(3.17e-05)]_\ 16_[+2(1.51e-05)]_[+2(1.51e-05)]_[+5(9.13e-05)]_29 chrX:4330929-4331049 1.39e-03 56_[+4(3.21e-05)]_56 chr2R:23158357-23158477 7.43e-02 18_[+4(4.75e-05)]_94 chrX:8862822-8862942 6.14e-03 69_[+3(8.34e-05)]_43 chr3L:12699595-12699715 2.85e-04 71_[+3(3.50e-05)]_41 chrX:5189761-5189881 1.96e-04 17_[+3(8.34e-05)]_[+3(3.50e-05)]_4_\ [+3(1.83e-05)]_[+3(1.83e-05)]_[+3(1.83e-05)]_[+3(1.83e-05)]_2_\ [+2(4.83e-05)]_4_[+2(6.20e-05)]_29 chr2R:11519525-11519645 1.09e-03 45_[+2(1.51e-05)]_[+2(1.51e-05)]_\ [+2(1.51e-05)]_51 chrX:19023151-19023271 9.88e-05 71_[+2(1.51e-05)]_[+5(9.13e-05)]_6_\ [+3(6.67e-05)]_19 chr3R:15177731-15177851 4.40e-03 43_[+1(4.86e-05)]_[+1(1.51e-05)]_2_\ [+4(1.51e-05)]_[+4(1.51e-05)]_43 chr3L:14712632-14712752 4.06e-04 40_[+3(9.86e-05)]_8_[+3(1.83e-05)]_\ 56 chr3L:21607929-21608049 2.00e-03 35_[+3(9.86e-05)]_5_[+5(5.91e-05)]_\ [+5(5.91e-05)]_56 chr3R:13087127-13087247 3.35e-04 88_[+2(1.51e-05)]_[+2(3.17e-05)]_16 chrX:12233327-12233447 6.33e-01 120 chr3R:24888522-24888642 1.32e-02 81_[+1(9.92e-05)]_31 chr3L:22671471-22671591 5.71e-02 3_[+2(3.17e-05)]_109 chrX:19395340-19395460 9.78e-01 120 chr2R:21852217-21852337 1.16e-04 18_[+2(9.41e-05)]_25_[+5(1.51e-05)]_\ [+5(2.85e-05)]_53 chr3R:23833999-23834119 8.94e-01 120 chrX:5057517-5057637 6.01e-05 83_[+4(1.51e-05)]_13_[+4(1.51e-05)]_\ 8 chr3R:5888037-5888157 4.03e-01 120 chr3R:27400114-27400234 2.50e-01 120 chr3R:20603383-20603503 6.86e-04 28_[+2(4.83e-05)]_18_[+5(4.57e-05)]_\ 58 chr3R:14174192-14174312 2.10e-03 51_[+3(9.86e-05)]_[+3(9.86e-05)]_\ [+3(9.86e-05)]_1_[+5(4.57e-05)]_36 chrX:8276221-8276341 4.09e-01 120 chrX:9734911-9735031 8.54e-04 48_[+4(1.51e-05)]_16_[+4(1.51e-05)]_\ 40 chr3L:12195276-12195396 5.40e-01 120 chr3L:10205939-10206059 4.29e-03 32_[+4(3.21e-05)]_80 chr3L:9252543-9252663 1.86e-03 10_[+4(3.21e-05)]_4_[+4(1.51e-05)]_\ 6_[+1(1.51e-05)]_[+1(1.51e-05)]_[+1(1.51e-05)]_60 chr2L:1432306-1432426 7.94e-04 120 chrX:19537446-19537566 3.35e-03 70_[+3(9.86e-05)]_[+3(9.86e-05)]_\ [+3(9.86e-05)]_26 chr3L:12260794-12260914 2.87e-04 25_[+3(1.83e-05)]_12_[+3(5.16e-05)]_\ 12_[+5(4.57e-05)]_47 chr3R:18875292-18875412 5.76e-01 120 chrX:7526922-7527042 3.11e-04 27_[+2(1.51e-05)]_12_[+2(1.51e-05)]_\ 4_[+2(1.51e-05)]_53 chr3L:11469276-11469396 1.36e-04 49_[+2(1.51e-05)]_4_[+2(1.51e-05)]_\ [+2(1.51e-05)]_[+2(1.51e-05)]_22_[+2(4.83e-05)]_5 chr3L:18561739-18561859 3.23e-05 27_[+1(9.92e-05)]_28_[+5(9.13e-05)]_\ 49 chr2R:23590764-23590884 3.70e-04 68_[+2(1.51e-05)]_[+2(1.51e-05)]_4_\ [+2(6.20e-05)]_24 chr3R:20477684-20477804 1.99e-04 11_[+2(1.51e-05)]_4_[+2(1.51e-05)]_\ [+2(1.51e-05)]_[+2(1.51e-05)]_12_[+2(4.83e-05)]_16_[+2(4.83e-05)]_29 chrX:5975250-5975370 2.02e-04 55_[+2(1.51e-05)]_24_[+5(9.13e-05)]_\ 25 chrX:9991431-9991551 3.61e-02 76_[+1(4.86e-05)]_36 chr2L:1471419-1471539 8.33e-02 120 chrX:18662206-18662326 3.18e-03 64_[+4(1.51e-05)]_8_[+4(6.45e-05)]_\ 32 chr2L:7955943-7956063 6.89e-05 43_[+1(9.92e-05)]_6_[+4(1.51e-05)]_\ 8_[+4(3.21e-05)]_39 chr3R:24018547-24018667 2.48e-03 36_[+4(1.51e-05)]_6_[+1(1.51e-05)]_\ 62 chr3L:10780370-10780490 2.93e-03 47_[+1(3.21e-05)]_35_[+4(1.51e-05)]_\ 22 chr3L:16028472-16028592 8.58e-02 69_[+4(4.75e-05)]_43 chrX:751547-751667 2.08e-02 120 chr3L:13240306-13240426 7.58e-02 120 chr2L:2915852-2915972 4.76e-03 31_[+3(9.86e-05)]_12_[+3(9.86e-05)]_\ [+3(9.86e-05)]_53 chr3L:22352790-22352910 1.39e-04 56_[+2(8.03e-05)]_[+2(4.83e-05)]_4_\ [+2(1.51e-05)]_[+2(1.51e-05)]_28 chrX:3105617-3105737 7.06e-05 27_[+3(1.83e-05)]_8_[+3(1.83e-05)]_\ 61_[+2(1.51e-05)] chr3L:21857729-21857849 1.26e-03 34_[+5(9.13e-05)]_32_[+2(4.83e-05)]_\ 8_[+2(6.20e-05)]_22 chr3R:21980261-21980381 8.88e-04 16_[+4(9.85e-05)]_5_[+4(3.21e-05)]_\ 12_[+4(1.51e-05)]_10_[+1(1.51e-05)]_[+1(1.51e-05)]_37 chr3R:13847589-13847709 6.10e-03 48_[+1(1.51e-05)]_12_[+1(3.21e-05)]_\ [+1(3.21e-05)]_[+1(3.21e-05)]_28 chr3L:13863960-13864080 3.56e-03 120 chr2L:18867433-18867553 6.32e-02 48_[+4(4.75e-05)]_64 chr3L:19335529-19335649 1.02e-05 15_[+1(4.86e-05)]_6_[+4(1.51e-05)]_\ 10_[+1(4.86e-05)]_65 chr2R:23162601-23162721 4.41e-03 56_[+3(9.86e-05)]_4_[+3(9.86e-05)]_\ 44 chrX:8083555-8083675 3.50e-03 19_[+1(9.92e-05)]_[+1(9.92e-05)]_4_\ [+1(1.51e-05)]_2_[+4(1.51e-05)]_10_[+1(9.92e-05)]_45 chrX:11651712-11651832 2.57e-01 120 chr3L:4438975-4439095 1.21e-02 58_[+2(3.17e-05)]_54 chr2L:17241680-17241800 2.40e-03 77_[+2(4.83e-05)]_4_[+2(8.03e-05)]_\ 2_[+3(1.83e-05)]_13 chrX:7623146-7623266 1.79e-03 36_[+3(9.86e-05)]_[+3(9.86e-05)]_68 chrX:3005095-3005215 7.36e-05 39_[+2(3.17e-05)]_12_[+2(1.51e-05)]_\ [+2(1.51e-05)]_[+5(9.13e-05)]_37 chrX:12846699-12846819 3.64e-03 9_[+4(1.51e-05)]_[+4(1.51e-05)]_\ [+4(1.51e-05)]_35_[+1(4.86e-05)]_8_[+1(9.92e-05)]_28 chr3L:8550251-8550371 7.97e-02 120 chr3L:12772893-12773013 1.41e-01 72_[+2(8.03e-05)]_40 chr3R:25636238-25636358 7.45e-05 33_[+2(3.17e-05)]_8_[+2(1.51e-05)]_\ 4_[+5(2.85e-05)]_12_[+2(1.51e-05)]_31 chrX:17370880-17371000 3.91e-03 65_[+5(1.51e-05)]_47 chr2R:21605795-21605915 1.50e-02 51_[+4(9.85e-05)]_61 chr2L:3642238-3642358 4.77e-01 120 chrX:5114664-5114784 1.45e-01 31_[+4(9.85e-05)]_81 chr2L:6340796-6340916 1.19e-02 66_[+5(1.51e-05)]_46 chr2R:12483411-12483531 3.38e-03 82_[+5(1.51e-05)]_30 chr3L:14077923-14078043 5.86e-02 73_[+4(9.85e-05)]_39 chr3R:15469338-15469458 6.88e-01 120 chr3R:19452929-19453049 1.46e-03 36_[+4(6.45e-05)]_13_[+4(3.21e-05)]_\ 8_[+4(1.51e-05)]_4_[+4(1.51e-05)]_27 chrX:21002058-21002178 3.62e-03 63_[+5(9.13e-05)]_49 chrX:8888309-8888429 7.49e-03 120 chr2R:19130293-19130413 1.68e-01 120 chr3R:13568480-13568600 4.08e-03 34_[+4(3.21e-05)]_12_[+4(1.51e-05)]_\ 8_[+4(1.51e-05)]_42 chrX:9744972-9745092 3.33e-04 43_[+3(6.67e-05)]_16_[+3(9.86e-05)]_\ [+3(9.86e-05)]_37 chrX:14531086-14531206 3.88e-04 26_[+2(9.41e-05)]_8_[+2(3.17e-05)]_\ 8_[+2(1.51e-05)]_54 chr2R:14559619-14559739 1.54e-04 50_[+2(1.51e-05)]_62 chr2R:15560188-15560308 6.83e-02 89_[+1(9.92e-05)]_23 chrX:5124660-5124780 1.99e-03 55_[+1(3.21e-05)]_20_[+1(1.51e-05)]_\ 29 chrX:11527188-11527308 4.49e-03 24_[+4(1.51e-05)]_88 chr3L:6577592-6577712 2.83e-02 120 chr3R:21631927-21632047 7.06e-03 70_[+4(3.21e-05)]_42 chr2R:8755804-8755924 1.01e-02 48_[+3(6.67e-05)]_64 chr2L:15763554-15763674 6.33e-01 120 chr3R:13726031-13726151 3.77e-01 120 chr2R:13916575-13916695 1.88e-05 56_[+2(1.51e-05)]_[+2(1.51e-05)]_8_\ [+2(3.17e-05)]_4_[+2(3.17e-05)]_20 chr3L:19239914-19240034 1.91e-05 36_[+2(3.17e-05)]_[+2(1.51e-05)]_55_\ [+5(9.13e-05)]_5 chr3R:4962005-4962125 1.42e-03 28_[+3(3.50e-05)]_[+3(9.86e-05)]_\ [+3(9.86e-05)]_[+3(9.86e-05)]_60 chrX:1250223-1250343 2.69e-03 9_[+3(1.83e-05)]_[+3(1.83e-05)]_95 chr2R:19154352-19154472 6.87e-02 45_[+4(3.21e-05)]_67 chr2R:17251737-17251857 3.35e-03 28_[+3(9.86e-05)]_[+3(9.86e-05)]_12_\ [+3(9.86e-05)]_56 chr3R:21941023-21941143 2.10e-04 54_[+2(1.51e-05)]_58 chr2R:23255222-23255342 2.77e-04 63_[+5(9.13e-05)]_49 chrX:17780973-17781093 4.02e-01 120 chrX:1715845-1715965 1.19e-02 71_[+4(3.21e-05)]_41 chr2R:11071738-11071858 1.06e-03 39_[+1(3.21e-05)]_73 chr2L:10499198-10499318 2.57e-01 120 chr2L:13095944-13096064 1.54e-04 38_[+5(5.91e-05)]_74 chrX:14948209-14948329 2.37e-03 76_[+5(9.13e-05)]_36 chr3R:22889441-22889561 6.54e-03 41_[+1(3.21e-05)]_4_[+1(3.21e-05)]_\ 59 chrX:19408389-19408509 1.76e-03 33_[+3(9.86e-05)]_[+3(9.86e-05)]_\ [+3(9.86e-05)]_8_[+3(3.50e-05)]_47 chr2R:22541356-22541476 5.19e-03 120 chr2L:11069039-11069159 8.49e-02 33_[+5(1.51e-05)]_79 chr2L:6176502-6176622 5.97e-04 46_[+3(1.83e-05)]_66 chr3L:3452443-3452563 5.87e-03 61_[+1(3.21e-05)]_51 chrX:10008685-10008805 1.44e-04 47_[+1(3.21e-05)]_[+1(1.51e-05)]_\ [+1(1.51e-05)]_2_[+4(1.51e-05)]_4_[+4(3.21e-05)]_27 chr2R:20524746-20524866 5.03e-03 21_[+1(3.21e-05)]_30_[+4(3.21e-05)]_\ 53 chr2R:10771466-10771586 1.33e-04 28_[+2(1.51e-05)]_6_[+3(1.83e-05)]_\ 24_[+3(1.83e-05)]_[+3(1.83e-05)]_30 chr3L:1357010-1357130 8.74e-05 [+5(4.57e-05)]_17_[+3(9.86e-05)]_87 chr3R:25126937-25127057 4.97e-01 120 chr2R:22523732-22523852 9.23e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************