******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8159.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:16426619-16426739 1.0000 120 chrX:17708963-17709083 1.0000 120 chr2L:9784619-9784739 1.0000 120 chr2R:7620937-7621057 1.0000 120 chr2R:10565630-10565750 1.0000 120 chr2L:5071319-5071439 1.0000 120 chr2R:17262155-17262275 1.0000 120 chr2R:14243655-14243775 1.0000 120 chr2R:13955965-13956085 1.0000 120 chrX:16092835-16092955 1.0000 120 chr2L:822287-822407 1.0000 120 chr2R:6965999-6966119 1.0000 120 chr3R:13010938-13011058 1.0000 120 chr3R:9611083-9611203 1.0000 120 chr2R:11338971-11339091 1.0000 120 chr3L:11593922-11594042 1.0000 120 chr2L:2855636-2855756 1.0000 120 chr3L:11544052-11544172 1.0000 120 chr2R:18589527-18589647 1.0000 120 chr3R:15320641-15320761 1.0000 120 chr3R:29280817-29280937 1.0000 120 chr3L:20353880-20354000 1.0000 120 chr3L:10761266-10761386 1.0000 120 chr3R:29794235-29794355 1.0000 120 chr3L:12671842-12671962 1.0000 120 chr2L:20098341-20098461 1.0000 120 chrX:9466323-9466443 1.0000 120 chr2R:18195529-18195649 1.0000 120 chr2L:7772040-7772160 1.0000 120 chr3L:16208549-16208669 1.0000 120 chr3L:12703599-12703719 1.0000 120 chr2L:5478440-5478560 1.0000 120 chr3L:14145762-14145882 1.0000 120 chr3R:21940351-21940471 1.0000 120 chrX:15024820-15024940 1.0000 120 chr3L:18219579-18219699 1.0000 120 chr2R:15046991-15047111 1.0000 120 chr2L:8672403-8672523 1.0000 120 chrX:17165510-17165630 1.0000 120 chr3R:5053004-5053124 1.0000 120 chr2L:5781076-5781196 1.0000 120 chr2L:16537145-16537265 1.0000 120 chr2R:16731580-16731700 1.0000 120 chr3L:12099765-12099885 1.0000 120 chr3L:11382763-11382883 1.0000 120 chr3L:5864001-5864121 1.0000 120 chr3L:19649193-19649313 1.0000 120 chrX:11822125-11822245 1.0000 120 chr3L:3444525-3444645 1.0000 120 chr3R:29279707-29279827 1.0000 120 chr2L:2944657-2944777 1.0000 120 chr3L:10757093-10757213 1.0000 120 chrX:9467173-9467293 1.0000 120 chr3R:13215252-13215372 1.0000 120 chr3R:18377267-18377387 1.0000 120 chr3L:6391531-6391651 1.0000 120 chr2L:1136671-1136791 1.0000 120 chr2L:3559802-3559922 1.0000 120 chr2R:15063841-15063961 1.0000 120 chr3L:15641741-15641861 1.0000 120 chr3L:16212028-16212148 1.0000 120 chr3R:14421976-14422096 1.0000 120 chr3R:8739538-8739658 1.0000 120 chr2R:24531986-24532106 1.0000 120 chr3L:12113110-12113230 1.0000 120 chr3R:13875628-13875748 1.0000 120 chr3L:16268448-16268568 1.0000 120 chr3L:16174897-16175017 1.0000 120 chr3L:6366847-6366967 1.0000 120 chr3L:8822358-8822478 1.0000 120 chr3L:11373952-11374072 1.0000 120 chr3R:8445566-8445686 1.0000 120 chr3L:4747613-4747733 1.0000 120 chr2R:11605744-11605864 1.0000 120 chr2R:18746926-18747046 1.0000 120 chr2L:14569404-14569524 1.0000 120 chr3L:11439679-11439799 1.0000 120 chr3R:10177089-10177209 1.0000 120 chr3L:766444-766564 1.0000 120 chr3R:14275597-14275717 1.0000 120 chr2R:19987207-19987327 1.0000 120 chr3L:3644465-3644585 1.0000 120 chr2R:8995107-8995227 1.0000 120 chr2L:7997829-7997949 1.0000 120 chr2L:15909415-15909535 1.0000 120 chr3L:17926641-17926761 1.0000 120 chr2R:11551158-11551278 1.0000 120 chr3R:20308711-20308831 1.0000 120 chr2R:24411791-24411911 1.0000 120 chr3R:30864562-30864682 1.0000 120 chr3R:7041014-7041134 1.0000 120 chr2L:16590879-16590999 1.0000 120 chr3L:20990406-20990526 1.0000 120 chr3R:10885825-10885945 1.0000 120 chr3R:7025332-7025452 1.0000 120 chr2L:14651752-14651872 1.0000 120 chr2R:11083852-11083972 1.0000 120 chr3L:10545143-10545263 1.0000 120 chr2L:20989644-20989764 1.0000 120 chr2L:13146427-13146547 1.0000 120 chrX:20483002-20483122 1.0000 120 chr3L:14241208-14241328 1.0000 120 chr3L:6391731-6391851 1.0000 120 chrX:17537367-17537487 1.0000 120 chr3R:14098582-14098702 1.0000 120 chr3L:16168221-16168341 1.0000 120 chr3R:27199497-27199617 1.0000 120 chr2L:13268367-13268487 1.0000 120 chr3L:1693022-1693142 1.0000 120 chr2R:17499277-17499397 1.0000 120 chr2R:9071837-9071957 1.0000 120 chr2R:18589729-18589849 1.0000 120 chr2L:15390586-15390706 1.0000 120 chr2L:13258843-13258963 1.0000 120 chr3L:8358275-8358395 1.0000 120 chr2L:5751606-5751726 1.0000 120 chr3L:705269-705389 1.0000 120 chr3L:767040-767160 1.0000 120 chr3L:20592726-20592846 1.0000 120 chrX:15323769-15323889 1.0000 120 chr3L:20582526-20582646 1.0000 120 chrX:379654-379774 1.0000 120 chrX:13345444-13345564 1.0000 120 chr3L:12096881-12097001 1.0000 120 chr3R:16151641-16151761 1.0000 120 chr3L:12706618-12706738 1.0000 120 chr2R:15000539-15000659 1.0000 120 chr3L:16362193-16362313 1.0000 120 chr2L:4417007-4417127 1.0000 120 chr3R:28847975-28848095 1.0000 120 chr3R:27084828-27084948 1.0000 120 chr3L:3106289-3106409 1.0000 120 chr3R:7953168-7953288 1.0000 120 chr2R:21377257-21377377 1.0000 120 chr3R:27175880-27176000 1.0000 120 chr2R:8749881-8750001 1.0000 120 chr3R:13916672-13916792 1.0000 120 chr2R:15825543-15825663 1.0000 120 chr3L:15013382-15013502 1.0000 120 chr2R:24275099-24275219 1.0000 120 chr3R:30259711-30259831 1.0000 120 chr3R:22455737-22455857 1.0000 120 chr2R:18215424-18215544 1.0000 120 chr2R:18194866-18194986 1.0000 120 chr3L:16259609-16259729 1.0000 120 chr3R:22184216-22184336 1.0000 120 chr3R:21826278-21826398 1.0000 120 chr3R:14389433-14389553 1.0000 120 chr2L:18468143-18468263 1.0000 120 chr3R:23763654-23763774 1.0000 120 chr3L:21044005-21044125 1.0000 120 chr3R:29570371-29570491 1.0000 120 chr3L:14610603-14610723 1.0000 120 chr3R:16413812-16413932 1.0000 120 chr3L:6364367-6364487 1.0000 120 chr2R:11749585-11749705 1.0000 120 chr3R:10829892-10830012 1.0000 120 chrX:7540897-7541017 1.0000 120 chrX:7222253-7222373 1.0000 120 chr2L:5567207-5567327 1.0000 120 chr2R:9498792-9498912 1.0000 120 chr3L:5637643-5637763 1.0000 120 chrX:12511411-12511531 1.0000 120 chr3L:13178363-13178483 1.0000 120 chr3R:21649601-21649721 1.0000 120 chr3L:484957-485077 1.0000 120 chr3L:7994006-7994126 1.0000 120 chrX:9987844-9987964 1.0000 120 chr2L:19156603-19156723 1.0000 120 chr3L:15220449-15220569 1.0000 120 chr3L:13406995-13407115 1.0000 120 chr2L:5479280-5479400 1.0000 120 chr2R:19968842-19968962 1.0000 120 chr3L:21253098-21253218 1.0000 120 chrX:14017547-14017667 1.0000 120 chr3R:15631058-15631178 1.0000 120 chr2L:7968232-7968352 1.0000 120 chr3R:29290983-29291103 1.0000 120 chr2L:20956959-20957079 1.0000 120 chr2L:3158570-3158690 1.0000 120 chrX:9656470-9656590 1.0000 120 chrX:18540406-18540526 1.0000 120 chrX:3867182-3867302 1.0000 120 chrX:21127399-21127519 1.0000 120 chr2L:2432970-2433090 1.0000 120 chrX:5020163-5020283 1.0000 120 chr2L:17421540-17421660 1.0000 120 chrX:17807085-17807205 1.0000 120 chr2R:11755342-11755462 1.0000 120 chr3L:6371536-6371656 1.0000 120 chr2L:723944-724064 1.0000 120 chr3R:14007638-14007758 1.0000 120 chr2R:11544141-11544261 1.0000 120 chr3L:10923117-10923237 1.0000 120 chr2L:8855611-8855731 1.0000 120 chr3L:4383204-4383324 1.0000 120 chr2R:19149843-19149963 1.0000 120 chr2R:18300883-18301003 1.0000 120 chr3L:3442155-3442275 1.0000 120 chrX:342568-342688 1.0000 120 chrX:18929602-18929722 1.0000 120 chr2R:11048079-11048199 1.0000 120 chrX:13830291-13830411 1.0000 120 chr3L:10942654-10942774 1.0000 120 chr3L:17577023-17577143 1.0000 120 chr2L:11069663-11069783 1.0000 120 chr3L:1064495-1064615 1.0000 120 chr2L:8919808-8919928 1.0000 120 chr2L:15388357-15388477 1.0000 120 chr3R:27222087-27222207 1.0000 120 chr3L:8013445-8013565 1.0000 120 chr3R:17202442-17202562 1.0000 120 chr3L:22909934-22910054 1.0000 120 chr2L:21020167-21020287 1.0000 120 chr3R:15596082-15596202 1.0000 120 chr2L:15459066-15459186 1.0000 120 chr3L:776332-776452 1.0000 120 chr2L:9981967-9982087 1.0000 120 chr2L:3582784-3582904 1.0000 120 chr3R:7651140-7651260 1.0000 120 chrX:7537970-7538090 1.0000 120 chr3L:15209144-15209264 1.0000 120 chr3L:21720964-21721084 1.0000 120 chr3R:29091709-29091829 1.0000 120 chr3L:19055198-19055318 1.0000 120 chr2L:11052516-11052636 1.0000 120 chr3L:2533157-2533277 1.0000 120 chr3L:14350944-14351064 1.0000 120 chr2R:11033724-11033844 1.0000 120 chr3R:5694611-5694731 1.0000 120 chr2R:14076240-14076360 1.0000 120 chr3L:2866956-2867076 1.0000 120 chr3R:27179112-27179232 1.0000 120 chrX:7558776-7558896 1.0000 120 chr2L:646669-646789 1.0000 120 chr3L:14611480-14611600 1.0000 120 chr2R:22529769-22529889 1.0000 120 chr3R:30843219-30843339 1.0000 120 chr3L:20952223-20952343 1.0000 120 chr3L:15005906-15006026 1.0000 120 chr2L:5372698-5372818 1.0000 120 chrX:19878931-19879051 1.0000 120 chrX:11658589-11658709 1.0000 120 chr2L:3153054-3153174 1.0000 120 chr3R:16210931-16211051 1.0000 120 chr3L:18078830-18078950 1.0000 120 chr3R:7646318-7646438 1.0000 120 chr3R:6102425-6102545 1.0000 120 chr2R:17831912-17832032 1.0000 120 chr3R:9966249-9966369 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8159/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8159.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.356 C 0.148 G 0.149 T 0.347 Background letter frequencies (from file dataset with add-one prior applied): A 0.356 C 0.148 G 0.149 T 0.347 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTSSACC MEME-1 width = 8 sites = 38 llr = 379 E-value = 2.0e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::19:: pos.-specific C :::451a8 probability G 9a154::: matrix T ::91:::2 bits 2.8 * 2.5 * * 2.2 * * 1.9 ** ** Relative 1.7 ** ** Entropy 1.4 ** ** ** (14.4 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGTGCACC consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24275099-24275219 28 2.66e-06 CCTGAGATGG GGTGGACC AGAGTCGGTC chrX:15323769-15323889 58 2.66e-06 AAGAAAAGAG GGTGGACC CAATTGCTCT chr2R:24531986-24532106 58 2.66e-06 GCGGCATTGG GGTGGACC CTTTGCACAG chrX:11822125-11822245 32 2.66e-06 TGCGCATTAG GGTGGACC TTAACTCAGT chrX:17165510-17165630 32 2.66e-06 AACCATTTAA GGTGGACC TTCCGCACGT chrX:15024820-15024940 65 2.66e-06 GGGAGAATAG GGTGGACC TGTGCCGGCA chr2L:7772040-7772160 14 2.66e-06 ATTCGAAAGG GGTGGACC AAGAGTTAGG chr3R:29794235-29794355 21 2.66e-06 GGTAGATTAG GGTGGACC AACAAAGGCT chr2R:6965999-6966119 30 2.66e-06 GCAGCATTAG GGTGGACC AACAACGTGT chr2R:13955965-13956085 21 2.66e-06 ACGTGGCTGG GGTGGACC ACTACAGACT chr2R:7620937-7621057 68 2.66e-06 GCTGAATTAG GGTGGACC TTGTTCAGGA chrX:16426619-16426739 23 2.66e-06 GAAGCCCTAG GGTGGACC CTGttgcact chr3R:7041014-7041134 53 3.97e-06 TAATTTTTTT GGTCCACC CCAATTCCCG chr2L:1136671-1136791 104 3.97e-06 GTGAAAACAG GGTCCACC CCACGGATT chr2R:16731580-16731700 91 3.97e-06 TTGCAAGAGC GGTCCACC CTCATGGGTT chr3L:11544052-11544172 82 3.97e-06 TAATGGATTG GGTCCACC CTAGCCGTGT chr3R:9611083-9611203 61 3.97e-06 CACGGAAGAT GGTCCACC CTAATCCTAC chr2R:14243655-14243775 36 7.55e-06 TTACGGTTAG GGTGGCCC GCCTCGCACA chr2L:5071319-5071439 73 7.55e-06 ACCCATTTAG GGTGGCCC AAAAAAGGGA chrX:17708963-17709083 66 8.66e-06 GCTCAGCTGT GGGCCACC CTAATGAATT chr3R:20308711-20308831 36 1.29e-05 CTCAAAAATA GGTTCACC CTAACGAAAG chr2L:2944657-2944777 79 1.29e-05 GCGCAGTTAA GGTTCACC CTAATGCACG chr3R:13010938-13011058 47 1.29e-05 TTACATTTTT GGTTCACC CTAAGGTTCA chr3R:16413812-16413932 55 2.85e-05 GCATTGTTTT GGTCCACT CAACTTCTAT chr3R:14098582-14098702 55 2.85e-05 CGAAAAACAT GGTCCACT CTAGCGTCGT chr2R:18589527-18589647 74 2.85e-05 CAGGAATTTG GGTCCACT CTAAAAGCCG chr2R:11338971-11339091 59 2.85e-05 TGGGAACTTT GGTCCACT CTAAGCGTAA chr2L:822287-822407 74 2.85e-05 AGTCGAATAA GGTCCACT CTAGTGCATG chr3L:3444525-3444645 78 3.47e-05 AGTGGACCAG AGTGGACC AAAGTGGCCC chr2L:20098341-20098461 78 3.47e-05 AAACGAAAAG AGTGGACC TTTTTCGAAC chrX:16092835-16092955 35 3.47e-05 TGTACATTAG AGTGGACC TAGCTCGAAC chr3R:6102425-6102545 4 3.79e-05 TAC AGTCCACC ATAAATTTTG chr3L:10761266-10761386 39 4.42e-05 CCCAGAACAG GGTGAACC AAAACCACGC chr3R:30843219-30843339 92 4.79e-05 TATAGTCTCA GGTCAACC ATATATATAT chr2L:5781076-5781196 107 5.23e-05 TTGGTGATTA GCTCCACC CTAAAA chr2R:24411791-24411911 62 5.62e-05 GGCATTTAGT GGGTCACC CTAGGTTGCC chrX:13830291-13830411 87 6.94e-05 CAGCTCAAAA GGGCCACT CTAAAATATC chr2R:21377257-21377377 2 7.74e-05 C AGTCCCCC CTGCAAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24275099-24275219 2.7e-06 27_[+1]_85 chrX:15323769-15323889 2.7e-06 57_[+1]_55 chr2R:24531986-24532106 2.7e-06 57_[+1]_55 chrX:11822125-11822245 2.7e-06 31_[+1]_81 chrX:17165510-17165630 2.7e-06 31_[+1]_81 chrX:15024820-15024940 2.7e-06 64_[+1]_48 chr2L:7772040-7772160 2.7e-06 13_[+1]_99 chr3R:29794235-29794355 2.7e-06 20_[+1]_92 chr2R:6965999-6966119 2.7e-06 29_[+1]_83 chr2R:13955965-13956085 2.7e-06 20_[+1]_92 chr2R:7620937-7621057 2.7e-06 67_[+1]_45 chrX:16426619-16426739 2.7e-06 22_[+1]_90 chr3R:7041014-7041134 4e-06 52_[+1]_60 chr2L:1136671-1136791 4e-06 103_[+1]_9 chr2R:16731580-16731700 4e-06 90_[+1]_22 chr3L:11544052-11544172 4e-06 81_[+1]_31 chr3R:9611083-9611203 4e-06 60_[+1]_52 chr2R:14243655-14243775 7.5e-06 35_[+1]_77 chr2L:5071319-5071439 7.5e-06 72_[+1]_40 chrX:17708963-17709083 8.7e-06 65_[+1]_47 chr3R:20308711-20308831 1.3e-05 35_[+1]_77 chr2L:2944657-2944777 1.3e-05 78_[+1]_34 chr3R:13010938-13011058 1.3e-05 46_[+1]_66 chr3R:16413812-16413932 2.8e-05 54_[+1]_58 chr3R:14098582-14098702 2.8e-05 54_[+1]_58 chr2R:18589527-18589647 2.8e-05 73_[+1]_39 chr2R:11338971-11339091 2.8e-05 58_[+1]_54 chr2L:822287-822407 2.8e-05 73_[+1]_39 chr3L:3444525-3444645 3.5e-05 77_[+1]_35 chr2L:20098341-20098461 3.5e-05 77_[+1]_35 chrX:16092835-16092955 3.5e-05 34_[+1]_78 chr3R:6102425-6102545 3.8e-05 3_[+1]_109 chr3L:10761266-10761386 4.4e-05 38_[+1]_74 chr3R:30843219-30843339 4.8e-05 91_[+1]_21 chr2L:5781076-5781196 5.2e-05 106_[+1]_6 chr2R:24411791-24411911 5.6e-05 61_[+1]_51 chrX:13830291-13830411 6.9e-05 86_[+1]_26 chr2R:21377257-21377377 7.7e-05 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTSSACC width=8 seqs=38 chr2R:24275099-24275219 ( 28) GGTGGACC 1 chrX:15323769-15323889 ( 58) GGTGGACC 1 chr2R:24531986-24532106 ( 58) GGTGGACC 1 chrX:11822125-11822245 ( 32) GGTGGACC 1 chrX:17165510-17165630 ( 32) GGTGGACC 1 chrX:15024820-15024940 ( 65) GGTGGACC 1 chr2L:7772040-7772160 ( 14) GGTGGACC 1 chr3R:29794235-29794355 ( 21) GGTGGACC 1 chr2R:6965999-6966119 ( 30) GGTGGACC 1 chr2R:13955965-13956085 ( 21) GGTGGACC 1 chr2R:7620937-7621057 ( 68) GGTGGACC 1 chrX:16426619-16426739 ( 23) GGTGGACC 1 chr3R:7041014-7041134 ( 53) GGTCCACC 1 chr2L:1136671-1136791 ( 104) GGTCCACC 1 chr2R:16731580-16731700 ( 91) GGTCCACC 1 chr3L:11544052-11544172 ( 82) GGTCCACC 1 chr3R:9611083-9611203 ( 61) GGTCCACC 1 chr2R:14243655-14243775 ( 36) GGTGGCCC 1 chr2L:5071319-5071439 ( 73) GGTGGCCC 1 chrX:17708963-17709083 ( 66) GGGCCACC 1 chr3R:20308711-20308831 ( 36) GGTTCACC 1 chr2L:2944657-2944777 ( 79) GGTTCACC 1 chr3R:13010938-13011058 ( 47) GGTTCACC 1 chr3R:16413812-16413932 ( 55) GGTCCACT 1 chr3R:14098582-14098702 ( 55) GGTCCACT 1 chr2R:18589527-18589647 ( 74) GGTCCACT 1 chr2R:11338971-11339091 ( 59) GGTCCACT 1 chr2L:822287-822407 ( 74) GGTCCACT 1 chr3L:3444525-3444645 ( 78) AGTGGACC 1 chr2L:20098341-20098461 ( 78) AGTGGACC 1 chrX:16092835-16092955 ( 35) AGTGGACC 1 chr3R:6102425-6102545 ( 4) AGTCCACC 1 chr3L:10761266-10761386 ( 39) GGTGAACC 1 chr3R:30843219-30843339 ( 92) GGTCAACC 1 chr2L:5781076-5781196 ( 107) GCTCCACC 1 chr2R:24411791-24411911 ( 62) GGGTCACC 1 chrX:13830291-13830411 ( 87) GGGCCACT 1 chr2R:21377257-21377377 ( 2) AGTCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 2.0e-025 -143 -1189 254 -1189 -1189 -249 271 -1189 -1189 -1189 -92 141 -1189 151 167 -172 -275 176 159 -1189 137 -91 -1189 -1189 -1189 276 -1189 -1189 -1189 251 -1189 -114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.0e-025 0.131579 0.000000 0.868421 0.000000 0.000000 0.026316 0.973684 0.000000 0.000000 0.000000 0.078947 0.921053 0.000000 0.421053 0.473684 0.105263 0.052632 0.500000 0.447368 0.000000 0.921053 0.078947 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.157895 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTSSACC MEME-1 regular expression -------------------------------------------------------------------------------- GGT[GC][CG]ACC -------------------------------------------------------------------------------- Time 7.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCCCACC MEME-2 width = 8 sites = 4 llr = 53 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::8:: pos.-specific C a5aaa:aa probability G :5:::3:: matrix T :::::::: bits 2.8 * *** ** 2.5 * *** ** 2.2 * *** ** 1.9 * *** ** Relative 1.7 ***** ** Entropy 1.4 ***** ** (19.3 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCACC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:766444-766564 64 1.11e-06 AAATAACTAA CCCCCACC CCAGCCACTT chrX:15024820-15024940 29 1.11e-06 TGCTGGATAC CGCCCACC GGGAGAATCG chr2L:7772040-7772160 64 1.11e-06 CCGTAACCGT CGCCCACC ATCTCTATCC chr3R:29280817-29280937 109 1.58e-06 AGATAACAAG CCCCCGCC TTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:766444-766564 1.1e-06 63_[+2]_49 chrX:15024820-15024940 1.1e-06 28_[+2]_84 chr2L:7772040-7772160 1.1e-06 63_[+2]_49 chr3R:29280817-29280937 1.6e-06 108_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCCCACC width=8 seqs=4 chr3L:766444-766564 ( 64) CCCCCACC 1 chrX:15024820-15024940 ( 29) CGCCCACC 1 chr2L:7772040-7772160 ( 64) CGCCCACC 1 chr3R:29280817-29280937 ( 109) CCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 1.4e+002 -865 275 -865 -865 -865 175 174 -865 -865 275 -865 -865 -865 275 -865 -865 -865 275 -865 -865 107 -865 75 -865 -865 275 -865 -865 -865 275 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCACC MEME-2 regular expression -------------------------------------------------------------------------------- C[CG]CCC[AG]CC -------------------------------------------------------------------------------- Time 13.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGSKGG MEME-3 width = 8 sites = 4 llr = 52 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :8a:5::: probability G a3:a55aa matrix T :::::5:: bits 2.8 * ** ** 2.5 * ** ** 2.2 * ** ** 1.9 **** ** Relative 1.7 ***** ** Entropy 1.4 ***** ** (18.6 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCCGCGGG consensus G GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13830291-13830411 14 4.78e-07 AAGTGTGACC GCCGCGGG TTACGTTTAT chr3L:6391731-6391851 24 1.59e-06 TAAGCCAGTG GCCGGTGG GATCAGGTAA chr3L:10761266-10761386 86 1.59e-06 CGGACATCCG GCCGGTGG TTAAGTGAAT chr2R:16731580-16731700 113 2.07e-06 TGGGTTATTA GGCGCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13830291-13830411 4.8e-07 13_[+3]_99 chr3L:6391731-6391851 1.6e-06 23_[+3]_89 chr3L:10761266-10761386 1.6e-06 85_[+3]_27 chr2R:16731580-16731700 2.1e-06 112_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGSKGG width=8 seqs=4 chrX:13830291-13830411 ( 14) GCCGCGGG 1 chr3L:6391731-6391851 ( 24) GCCGGTGG 1 chr3L:10761266-10761386 ( 86) GCCGGTGG 1 chr2R:16731580-16731700 ( 113) GGCGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 1.4e+003 -865 -865 274 -865 -865 234 75 -865 -865 275 -865 -865 -865 -865 274 -865 -865 175 174 -865 -865 -865 174 52 -865 -865 274 -865 -865 -865 274 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGSKGG MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]CG[CG][GT]GG -------------------------------------------------------------------------------- Time 20.27 secs. ******************************************************************************** ******************************************************************************** MOTIF STGCACWG MEME-4 width = 8 sites = 26 llr = 233 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::7:4: pos.-specific C 51:a19:: probability G 5:a:11:7 matrix T :8::2:63 bits 2.8 ** 2.5 ** * 2.2 ** * 1.9 ** * Relative 1.7 * ** * * Entropy 1.4 * ** * * (12.9 bits) 1.1 * ** * * 0.8 **** * * 0.6 **** *** 0.3 ******** 0.0 -------- Multilevel CTGCACTG consensus G AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3582784-3582904 10 3.09e-06 TTAAGCTAG CTGCACTG TGAAAAAAGT chr2R:11048079-11048199 16 6.19e-06 GCCCACATAC GTGCACTG GGAGAAATAA chr3L:6391531-6391651 84 6.19e-06 TATTTTCTCT GTGCACTG CATGCATCCT chr3L:1064495-1064615 16 9.36e-06 CTATCATACA CTGCACAG TATAATAAAT chr2R:15046991-15047111 104 1.25e-05 AACTAACGAC GTGCACAG ATTTAACAT chr2L:723944-724064 4 1.90e-05 ACT CTGCCCAG TGGATTAGGG chr2R:18194866-18194986 107 2.60e-05 TTCTTTTTGT GTGCGCTG TGTTAC chr3R:14098582-14098702 93 2.60e-05 TTCTTTCGTG CTGCTCTG ATTAATTTCC chr3L:10761266-10761386 19 2.60e-05 AGAGTAACCA GTGCCCAG TACCCAGAAC chr3L:8822358-8822478 71 2.73e-05 TCCAAAATTC CCGCACAG TTTAAGAAAC chr2L:5751606-5751726 81 3.17e-05 CCTAGACAAA GTGCTCTG TAATAGGTAT chr3R:21649601-21649721 35 3.31e-05 CAAACTGTAA GCGCACAG AAAAAAAATA chr3L:20952223-20952343 32 4.47e-05 CAACGGAAAT CTGCACTT AGATTGAATA chr3R:5694611-5694731 93 4.47e-05 AAATAATACA CTGCACTT TTGAATAGTT chr3L:19055198-19055318 36 4.47e-05 CTCTTAAAAA CTGCTCAG CTAAGATAAG chr3R:16413812-16413932 20 4.47e-05 TCTGCGATGT CTGCACTT TGCGAGGCGT chr2R:24411791-24411911 6 4.47e-05 CTGTA CTGCACTT TCAAATTCAG chr2R:17262155-17262275 79 4.47e-05 TTGCGATCGC GTGCGCAG AAATACACTC chrX:17708963-17709083 54 4.47e-05 TGGACTGCAG CTGCTCAG CTGTGGGCCA chr2R:11605744-11605864 47 5.55e-05 ATAACACATT GTGCACTT TAAATTAATC chr2L:7772040-7772160 44 5.55e-05 GACCCATGGC GTGCACTT AGCCGTAACC chr2L:9784619-9784739 56 6.35e-05 CTCAGCCAAA GCGCCCTG ACGTCACGCG chr3L:21720964-21721084 19 7.51e-05 CGAACAGAAT CTGCAGTG ATATTATATT chr2R:15000539-15000659 70 7.51e-05 ATATTTTCTT GTGCACAT GCAAAACTTA chr3R:10885825-10885945 30 7.51e-05 GGCCGTGGTG CTGCAGTG CATCCATGTA chr2L:5071319-5071439 1 1.49e-04 . CAGCACAG CAAGTACACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3582784-3582904 3.1e-06 9_[+4]_103 chr2R:11048079-11048199 6.2e-06 15_[+4]_97 chr3L:6391531-6391651 6.2e-06 83_[+4]_29 chr3L:1064495-1064615 9.4e-06 15_[+4]_97 chr2R:15046991-15047111 1.3e-05 103_[+4]_9 chr2L:723944-724064 1.9e-05 3_[+4]_109 chr2R:18194866-18194986 2.6e-05 106_[+4]_6 chr3R:14098582-14098702 2.6e-05 92_[+4]_20 chr3L:10761266-10761386 2.6e-05 18_[+4]_94 chr3L:8822358-8822478 2.7e-05 70_[+4]_42 chr2L:5751606-5751726 3.2e-05 80_[+4]_32 chr3R:21649601-21649721 3.3e-05 34_[+4]_78 chr3L:20952223-20952343 4.5e-05 31_[+4]_81 chr3R:5694611-5694731 4.5e-05 92_[+4]_20 chr3L:19055198-19055318 4.5e-05 35_[+4]_77 chr3R:16413812-16413932 4.5e-05 19_[+4]_93 chr2R:24411791-24411911 4.5e-05 5_[+4]_107 chr2R:17262155-17262275 4.5e-05 78_[+4]_34 chrX:17708963-17709083 4.5e-05 53_[+4]_59 chr2R:11605744-11605864 5.6e-05 46_[+4]_66 chr2L:7772040-7772160 5.6e-05 43_[+4]_69 chr2L:9784619-9784739 6.3e-05 55_[+4]_57 chr3L:21720964-21721084 7.5e-05 18_[+4]_94 chr2R:15000539-15000659 7.5e-05 69_[+4]_43 chr3R:10885825-10885945 7.5e-05 29_[+4]_83 chr2L:5071319-5071439 0.00015 [+4]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGCACWG width=8 seqs=26 chr2L:3582784-3582904 ( 10) CTGCACTG 1 chr2R:11048079-11048199 ( 16) GTGCACTG 1 chr3L:6391531-6391651 ( 84) GTGCACTG 1 chr3L:1064495-1064615 ( 16) CTGCACAG 1 chr2R:15046991-15047111 ( 104) GTGCACAG 1 chr2L:723944-724064 ( 4) CTGCCCAG 1 chr2R:18194866-18194986 ( 107) GTGCGCTG 1 chr3R:14098582-14098702 ( 93) CTGCTCTG 1 chr3L:10761266-10761386 ( 19) GTGCCCAG 1 chr3L:8822358-8822478 ( 71) CCGCACAG 1 chr2L:5751606-5751726 ( 81) GTGCTCTG 1 chr3R:21649601-21649721 ( 35) GCGCACAG 1 chr3L:20952223-20952343 ( 32) CTGCACTT 1 chr3R:5694611-5694731 ( 93) CTGCACTT 1 chr3L:19055198-19055318 ( 36) CTGCTCAG 1 chr3R:16413812-16413932 ( 20) CTGCACTT 1 chr2R:24411791-24411911 ( 6) CTGCACTT 1 chr2R:17262155-17262275 ( 79) GTGCGCAG 1 chrX:17708963-17709083 ( 54) CTGCTCAG 1 chr2R:11605744-11605864 ( 47) GTGCACTT 1 chr2L:7772040-7772160 ( 44) GTGCACTT 1 chr2L:9784619-9784739 ( 56) GCGCCCTG 1 chr3L:21720964-21721084 ( 19) CTGCAGTG 1 chr2R:15000539-15000659 ( 70) GTGCACAT 1 chr3R:10885825-10885945 ( 30) CTGCAGTG 1 chr2L:5071319-5071439 ( 1) CAGCACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 1.5e+003 -1134 186 163 -1134 -320 -36 -1134 128 -1134 -1134 275 -1134 -1134 276 -1134 -1134 88 -36 -95 -117 -1134 264 -95 -1134 25 -1134 -1134 73 -1134 -1134 229 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.5e+003 0.000000 0.538462 0.461538 0.000000 0.038462 0.115385 0.000000 0.846154 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.653846 0.115385 0.076923 0.153846 0.000000 0.923077 0.076923 0.000000 0.423077 0.000000 0.000000 0.576923 0.000000 0.000000 0.730769 0.269231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACWG MEME-4 regular expression -------------------------------------------------------------------------------- [CG]TGCAC[TA][GT] -------------------------------------------------------------------------------- Time 26.51 secs. ******************************************************************************** ******************************************************************************** MOTIF GYGKGSCG MEME-5 width = 8 sites = 8 llr = 90 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :4:::691 probability G a:a5a419 matrix T :6:4:::: bits 2.8 * * * 2.5 * * * 2.2 * * * ** 1.9 * * **** Relative 1.7 * * **** Entropy 1.4 * * **** (16.2 bits) 1.1 *** **** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGGGCCG consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10885825-10885945 17 2.38e-07 TTAGGGTGGT GCGGGCCG TGGTGCTGCA chrX:15024820-15024940 10 7.96e-07 CCCAAATTG GTGGGCCG CTGCTGGATA chr2R:24531986-24532106 43 1.60e-06 TATACACTAA GTGGGGCG GCATTGGGGT chr3R:7041014-7041134 93 3.45e-06 CAAGCAAGCA GTGTGCCG TGGTGTGAAA chr3L:3444525-3444645 104 5.80e-06 CCCGAGTGGA GTGTGGCG TGTTGAGTC chr2R:11048079-11048199 2 7.48e-06 T GTGGGCCC ACATACGTGC chr3R:16413812-16413932 29 1.10e-05 TCTGCACTTT GCGAGGCG TTGAAGTTGC chr2R:24275099-24275219 103 1.21e-05 GCCCTTTATC GCGTGCGG GGGAAACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10885825-10885945 2.4e-07 16_[+5]_96 chrX:15024820-15024940 8e-07 9_[+5]_103 chr2R:24531986-24532106 1.6e-06 42_[+5]_70 chr3R:7041014-7041134 3.5e-06 92_[+5]_20 chr3L:3444525-3444645 5.8e-06 103_[+5]_9 chr2R:11048079-11048199 7.5e-06 1_[+5]_111 chr3R:16413812-16413932 1.1e-05 28_[+5]_84 chr2R:24275099-24275219 1.2e-05 102_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGKGSCG width=8 seqs=8 chr3R:10885825-10885945 ( 17) GCGGGCCG 1 chrX:15024820-15024940 ( 10) GTGGGCCG 1 chr2R:24531986-24532106 ( 43) GTGGGGCG 1 chr3R:7041014-7041134 ( 93) GTGTGCCG 1 chr3L:3444525-3444645 ( 104) GTGTGGCG 1 chr2R:11048079-11048199 ( 2) GTGGGCCC 1 chr3R:16413812-16413932 ( 29) GCGAGGCG 1 chr2R:24275099-24275219 ( 103) GCGTGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 2.7e+003 -965 -965 275 -965 -965 134 -965 85 -965 -965 275 -965 -151 -965 175 11 -965 -965 275 -965 -965 208 133 -965 -965 256 -25 -965 -965 -24 255 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.500000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.125000 0.875000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGKGSCG MEME-5 regular expression -------------------------------------------------------------------------------- G[TC]G[GT]G[CG]CG -------------------------------------------------------------------------------- Time 32.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16426619-16426739 2.84e-04 22_[+1(2.66e-06)]_90 chrX:17708963-17709083 9.62e-07 53_[+4(4.47e-05)]_4_[+1(8.66e-06)]_\ 47 chr2L:9784619-9784739 2.07e-02 55_[+4(6.35e-05)]_57 chr2R:7620937-7621057 2.36e-06 67_[+1(2.66e-06)]_7_[+3(7.81e-05)]_\ 30 chr2R:10565630-10565750 1.26e-01 120 chr2L:5071319-5071439 1.01e-04 72_[+1(7.55e-06)]_40 chr2R:17262155-17262275 1.69e-04 76_[+5(2.69e-05)]_36 chr2R:14243655-14243775 5.09e-07 35_[+1(7.55e-06)]_15_[+1(2.85e-05)]_\ 54 chr2R:13955965-13956085 1.69e-04 2_[+3(3.26e-05)]_10_[+1(2.66e-06)]_\ 92 chrX:16092835-16092955 2.43e-02 34_[+1(3.47e-05)]_78 chr2L:822287-822407 1.93e-01 73_[+1(2.85e-05)]_39 chr2R:6965999-6966119 9.94e-05 29_[+1(2.66e-06)]_83 chr3R:13010938-13011058 4.56e-03 46_[+1(1.29e-05)]_66 chr3R:9611083-9611203 1.22e-04 60_[+1(3.97e-06)]_52 chr2R:11338971-11339091 5.07e-02 58_[+1(2.85e-05)]_54 chr3L:11593922-11594042 8.40e-01 120 chr2L:2855636-2855756 5.07e-03 120 chr3L:11544052-11544172 2.36e-03 81_[+1(3.97e-06)]_31 chr2R:18589527-18589647 8.94e-04 73_[+1(2.85e-05)]_39 chr3R:15320641-15320761 3.95e-01 120 chr3R:29280817-29280937 5.49e-04 108_[+2(1.58e-06)]_4 chr3L:20353880-20354000 8.79e-03 77_[+1(9.26e-05)]_35 chr3L:10761266-10761386 1.02e-06 18_[+4(2.60e-05)]_12_[+1(4.42e-05)]_\ 39_[+3(1.59e-06)]_27 chr3R:29794235-29794355 5.54e-03 20_[+1(2.66e-06)]_92 chr3L:12671842-12671962 1.09e-01 120 chr2L:20098341-20098461 1.59e-05 47_[+3(6.44e-05)]_22_[+1(3.47e-05)]_\ 35 chrX:9466323-9466443 1.06e-02 18_[+3(6.44e-05)]_94 chr2R:18195529-18195649 8.55e-01 120 chr2L:7772040-7772160 3.24e-08 13_[+1(2.66e-06)]_8_[+1(6.15e-05)]_\ 6_[+4(5.55e-05)]_12_[+2(1.11e-06)]_49 chr3L:16208549-16208669 9.88e-01 120 chr3L:12703599-12703719 9.93e-01 120 chr2L:5478440-5478560 9.29e-01 120 chr3L:14145762-14145882 9.76e-01 120 chr3R:21940351-21940471 9.62e-01 120 chrX:15024820-15024940 9.35e-11 9_[+5(7.96e-07)]_11_[+2(1.11e-06)]_\ 28_[+1(2.66e-06)]_48 chr3L:18219579-18219699 9.10e-01 120 chr2R:15046991-15047111 3.92e-02 103_[+4(1.25e-05)]_9 chr2L:8672403-8672523 9.98e-01 120 chrX:17165510-17165630 1.55e-04 31_[+1(2.66e-06)]_18_[+1(3.97e-06)]_\ 55 chr3R:5053004-5053124 5.22e-01 120 chr2L:5781076-5781196 5.52e-03 106_[+1(5.23e-05)]_6 chr2L:16537145-16537265 1.00e+00 120 chr2R:16731580-16731700 1.86e-06 90_[+1(3.97e-06)]_14_[+3(2.07e-06)] chr3L:12099765-12099885 8.77e-01 120 chr3L:11382763-11382883 3.72e-01 120 chr3L:5864001-5864121 8.49e-01 120 chr3L:19649193-19649313 4.48e-02 120 chrX:11822125-11822245 5.54e-04 31_[+1(2.66e-06)]_81 chr3L:3444525-3444645 1.13e-05 67_[+1(3.47e-05)]_2_[+1(3.47e-05)]_\ 2_[+1(7.47e-05)]_8_[+5(5.80e-06)]_9 chr3R:29279707-29279827 2.17e-01 120 chr2L:2944657-2944777 7.20e-04 78_[+1(1.29e-05)]_34 chr3L:10757093-10757213 9.62e-01 120 chrX:9467173-9467293 9.08e-01 120 chr3R:13215252-13215372 7.88e-01 120 chr3R:18377267-18377387 6.24e-01 120 chr3L:6391531-6391651 1.22e-02 83_[+4(6.19e-06)]_29 chr2L:1136671-1136791 2.84e-04 103_[+1(3.97e-06)]_9 chr2L:3559802-3559922 4.32e-01 120 chr2R:15063841-15063961 1.00e+00 120 chr3L:15641741-15641861 4.96e-01 120 chr3L:16212028-16212148 9.97e-01 120 chr3R:14421976-14422096 4.87e-01 120 chr3R:8739538-8739658 8.41e-01 120 chr2R:24531986-24532106 1.38e-06 42_[+5(1.60e-06)]_7_[+1(2.66e-06)]_\ 55 chr3L:12113110-12113230 9.82e-01 120 chr3R:13875628-13875748 1.00e+00 120 chr3L:16268448-16268568 6.70e-01 120 chr3L:16174897-16175017 9.82e-01 120 chr3L:6366847-6366967 9.51e-01 120 chr3L:8822358-8822478 1.65e-02 70_[+4(2.73e-05)]_42 chr3L:11373952-11374072 1.00e+00 120 chr3R:8445566-8445686 6.23e-01 120 chr3L:4747613-4747733 1.00e+00 120 chr2R:11605744-11605864 5.10e-02 46_[+4(5.55e-05)]_66 chr2R:18746926-18747046 3.08e-01 120 chr2L:14569404-14569524 1.00e+00 120 chr3L:11439679-11439799 9.98e-01 120 chr3R:10177089-10177209 7.60e-01 120 chr3L:766444-766564 2.64e-03 63_[+2(1.11e-06)]_49 chr3R:14275597-14275717 9.86e-01 120 chr2R:19987207-19987327 9.66e-01 120 chr3L:3644465-3644585 6.83e-01 120 chr2R:8995107-8995227 8.57e-02 120 chr2L:7997829-7997949 9.17e-01 120 chr2L:15909415-15909535 1.58e-01 120 chr3L:17926641-17926761 5.67e-01 120 chr2R:11551158-11551278 8.00e-01 120 chr3R:20308711-20308831 4.18e-03 35_[+1(1.29e-05)]_77 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9.17e-02 91_[+1(4.79e-05)]_21 chr3L:20952223-20952343 1.12e-01 31_[+4(4.47e-05)]_81 chr3L:15005906-15006026 2.99e-02 100_[+2(4.52e-05)]_12 chr2L:5372698-5372818 9.05e-01 120 chrX:19878931-19879051 1.00e+00 120 chrX:11658589-11658709 2.95e-01 120 chr2L:3153054-3153174 2.69e-02 120 chr3R:16210931-16211051 9.25e-01 120 chr3L:18078830-18078950 7.48e-01 120 chr3R:7646318-7646438 5.77e-01 120 chr3R:6102425-6102545 3.51e-02 3_[+1(3.79e-05)]_109 chr2R:17831912-17832032 9.99e-01 120 chr3R:9966249-9966369 9.92e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************