******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8089.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:23689946-23690066 1.0000 120 chr2L:22367007-22367127 1.0000 120 chr2R:1521960-1522080 1.0000 120 chr3L:26371513-26371633 1.0000 120 chr3L:27176193-27176313 1.0000 120 chr3L:24083156-24083276 1.0000 120 chr3L:23215532-23215652 1.0000 120 chr2L:22573544-22573664 1.0000 120 chr2R:5416581-5416701 1.0000 120 chr2R:4594381-4594501 1.0000 120 chr2R:5519037-5519157 1.0000 120 chr3L:23063700-23063820 1.0000 120 chr2L:23023917-23024037 1.0000 120 chr4:238517-238637 1.0000 120 chr3L:15835271-15835391 1.0000 120 chr3L:28012604-28012724 1.0000 120 chr3R:3786877-3786997 1.0000 120 chr2R:4546808-4546928 1.0000 120 chr4:1272196-1272316 1.0000 120 chr3R:5287426-5287546 1.0000 120 chr2R:5413513-5413633 1.0000 120 chr2R:4621805-4621925 1.0000 120 chr4:1161357-1161477 1.0000 120 chr2R:5417756-5417876 1.0000 120 chr2R:2846694-2846814 1.0000 120 chr2R:5529992-5530112 1.0000 120 chr2R:1527010-1527130 1.0000 120 chr2L:10231335-10231455 1.0000 120 chr2R:4649572-4649692 1.0000 120 chr3L:23738565-23738685 1.0000 120 chr3L:27176394-27176514 1.0000 120 chr2R:4130861-4130981 1.0000 120 chr2R:3900944-3901064 1.0000 120 chr2R:4671681-4671801 1.0000 120 chr2R:5090476-5090596 1.0000 120 chr2L:22538142-22538262 1.0000 120 chr2R:2124103-2124223 1.0000 120 chr2R:4618900-4619020 1.0000 120 chr2R:5307553-5307673 1.0000 120 chr2L:23065312-23065432 1.0000 120 chr3L:24028387-24028507 1.0000 120 chr2R:1590388-1590508 1.0000 120 chr2L:23176203-23176323 1.0000 120 chr2L:1164536-1164656 1.0000 120 chr2R:1264271-1264391 1.0000 120 chr2R:1356225-1356345 1.0000 120 chr2R:4242956-4243076 1.0000 120 chr4:193843-193963 1.0000 120 chr2R:931264-931384 1.0000 120 chr4:688041-688161 1.0000 120 chr3R:3789773-3789893 1.0000 120 chr2R:4544701-4544821 1.0000 120 chr3L:23338049-23338169 1.0000 120 chr2L:23025514-23025634 1.0000 120 chr2R:2565342-2565462 1.0000 120 chr4:695262-695382 1.0000 120 chr2L:21623793-21623913 1.0000 120 chr4:44849-44969 1.0000 120 chr3L:14166423-14166543 1.0000 120 chr2R:999969-1000089 1.0000 120 chr2R:4188126-4188246 1.0000 120 chr3L:26014179-26014299 1.0000 120 chr3R:2871320-2871440 1.0000 120 chr2R:4192921-4193041 1.0000 120 chr4:132063-132183 1.0000 120 chr4:1051390-1051510 1.0000 120 chr4:303888-304008 1.0000 120 chr3L:27279191-27279311 1.0000 120 chr3L:25120630-25120750 1.0000 120 chr3L:25413041-25413161 1.0000 120 chr2R:5663839-5663959 1.0000 120 chr2L:19949739-19949859 1.0000 120 chr3L:15837425-15837545 1.0000 120 chr3L:24083371-24083491 1.0000 120 chr2R:5250896-5251016 1.0000 120 chr2R:4829191-4829311 1.0000 120 chr2R:4012745-4012865 1.0000 120 chr2L:23174299-23174419 1.0000 120 chr3L:25115994-25116114 1.0000 120 chr3L:24537248-24537368 1.0000 120 chr2R:1345021-1345141 1.0000 120 chr2R:1649987-1650107 1.0000 120 chr3L:13295826-13295946 1.0000 120 chr2R:6788974-6789094 1.0000 120 chr2R:5604802-5604922 1.0000 120 chr2R:4823777-4823897 1.0000 120 chr3R:5059484-5059604 1.0000 120 chr4:466578-466698 1.0000 120 chr2R:1995642-1995762 1.0000 120 chr2R:19971447-19971567 1.0000 120 chr4:1219048-1219168 1.0000 120 chr2L:22579059-22579179 1.0000 120 chr3L:27083910-27084030 1.0000 120 chr2L:1399569-1399689 1.0000 120 chr2R:5340956-5341076 1.0000 120 chr3R:3846674-3846794 1.0000 120 chr3L:27267160-27267280 1.0000 120 chr2L:22550150-22550270 1.0000 120 chr3L:11358884-11359004 1.0000 120 chrX:18239457-18239577 1.0000 120 chr2R:1071025-1071145 1.0000 120 chr4:313871-313991 1.0000 120 chr3L:27136388-27136508 1.0000 120 chr3L:24352760-24352880 1.0000 120 chr4:867057-867177 1.0000 120 chr2R:5128308-5128428 1.0000 120 chr3R:3750277-3750397 1.0000 120 chr4:314805-314925 1.0000 120 chr2R:6649249-6649369 1.0000 120 chr2R:12587506-12587626 1.0000 120 chr3L:25271172-25271292 1.0000 120 chr2L:19399103-19399223 1.0000 120 chr2L:19424512-19424632 1.0000 120 chr2L:10497515-10497635 1.0000 120 chr3L:23258631-23258751 1.0000 120 chr4:179410-179530 1.0000 120 chr3L:23583634-23583754 1.0000 120 chr3R:16281635-16281755 1.0000 120 chr4:1181976-1182096 1.0000 120 chr2R:2959598-2959718 1.0000 120 chr2R:5352115-5352235 1.0000 120 chr3R:9875857-9875977 1.0000 120 chr3R:16957902-16958022 1.0000 120 chr3R:15920843-15920963 1.0000 120 chr2R:16785503-16785623 1.0000 120 chr3R:10154417-10154537 1.0000 120 chr2R:4013983-4014103 1.0000 120 chr2L:7277990-7278110 1.0000 120 chr2L:23315188-23315308 1.0000 120 chr2R:5090677-5090797 1.0000 120 chr3L:23580733-23580853 1.0000 120 chrX:18505276-18505396 1.0000 120 chr3L:16714281-16714401 1.0000 120 chr4:70186-70306 1.0000 120 chr3L:23099567-23099687 1.0000 120 chr2R:1264470-1264590 1.0000 120 chr2L:2873465-2873585 1.0000 120 chr2R:4827343-4827463 1.0000 120 chrX:772741-772861 1.0000 120 chr2L:3372813-3372933 1.0000 120 chr3R:3623136-3623256 1.0000 120 chr3L:11408836-11408956 1.0000 120 chr3R:31696846-31696966 1.0000 120 chr3L:24976126-24976246 1.0000 120 chr2L:1646678-1646798 1.0000 120 chrX:8542911-8543031 1.0000 120 chrX:582016-582136 1.0000 120 chrX:15653660-15653780 1.0000 120 chr2R:4729063-4729183 1.0000 120 chr2R:4243160-4243280 1.0000 120 chr3R:11372722-11372842 1.0000 120 chrX:10115669-10115789 1.0000 120 chr2R:8242703-8242823 1.0000 120 chr2L:7277084-7277204 1.0000 120 chr2L:22131369-22131489 1.0000 120 chr4:905075-905195 1.0000 120 chr3L:4227195-4227315 1.0000 120 chr2L:22169266-22169386 1.0000 120 chr2R:21848661-21848781 1.0000 120 chr2R:11969009-11969129 1.0000 120 chr3R:31549173-31549293 1.0000 120 chr4:482802-482922 1.0000 120 chrX:8491650-8491770 1.0000 120 chr2L:22981728-22981848 1.0000 120 chr3R:13817523-13817643 1.0000 120 chr2R:10238140-10238260 1.0000 120 chrX:7162664-7162784 1.0000 120 chr2R:14432259-14432379 1.0000 120 chr4:205953-206073 1.0000 120 chr4:307986-308106 1.0000 120 chr3L:19190911-19191031 1.0000 120 chr2R:5293869-5293989 1.0000 120 chr4:43790-43910 1.0000 120 chr3L:20006864-20006984 1.0000 120 chr2L:22239779-22239899 1.0000 120 chr3R:5300760-5300880 1.0000 120 chr3L:24537469-24537589 1.0000 120 chr2R:14488427-14488547 1.0000 120 chr2R:22200034-22200154 1.0000 120 chrX:13253146-13253266 1.0000 120 chr2R:5363140-5363260 1.0000 120 chr2R:5967734-5967854 1.0000 120 chr2R:12454203-12454323 1.0000 120 chr3R:11806900-11807020 1.0000 120 chrX:8671437-8671557 1.0000 120 chr2L:23068399-23068519 1.0000 120 chr2R:5122233-5122353 1.0000 120 chr3R:26436689-26436809 1.0000 120 chr3R:13885102-13885222 1.0000 120 chrX:13630435-13630555 1.0000 120 chr2L:21051920-21052040 1.0000 120 chr2R:14494808-14494928 1.0000 120 chrX:2166269-2166389 1.0000 120 chr2L:1428464-1428584 1.0000 120 chr2R:16848472-16848592 1.0000 120 chr2L:6818502-6818622 1.0000 120 chrX:17582774-17582894 1.0000 120 chr2L:17583182-17583302 1.0000 120 chr2L:18930828-18930948 1.0000 120 chr2L:7339765-7339885 1.0000 120 chr4:787663-787783 1.0000 120 chr2L:20327556-20327676 1.0000 120 chr2R:19311045-19311165 1.0000 120 chr3R:19648730-19648850 1.0000 120 chr3R:21377289-21377409 1.0000 120 chr2R:16610107-16610227 1.0000 120 chr4:670999-671119 1.0000 120 chrX:6109985-6110105 1.0000 120 chr2L:3587393-3587513 1.0000 120 chr2R:24046757-24046877 1.0000 120 chr2R:12274352-12274472 1.0000 120 chr3L:1463779-1463899 1.0000 120 chr2R:4744282-4744402 1.0000 120 chr3L:18242229-18242349 1.0000 120 chrX:11660595-11660715 1.0000 120 chr2L:16476755-16476875 1.0000 120 chr2R:6707828-6707948 1.0000 120 chr3R:24626217-24626337 1.0000 120 chr2L:8437296-8437416 1.0000 120 chr3L:22407784-22407904 1.0000 120 chr2R:23668818-23668938 1.0000 120 chr2L:9448888-9449008 1.0000 120 chr3R:25885269-25885389 1.0000 120 chr3R:29757368-29757488 1.0000 120 chr3L:6059209-6059329 1.0000 120 chr2L:1427922-1428042 1.0000 120 chrX:17820341-17820461 1.0000 120 chr3R:30767253-30767373 1.0000 120 chr3R:31060299-31060419 1.0000 120 chr2L:974257-974377 1.0000 120 chr3R:15670660-15670780 1.0000 120 chr3R:16625285-16625405 1.0000 120 chr3R:29251669-29251789 1.0000 120 chr3R:30164251-30164371 1.0000 120 chr3R:20276136-20276256 1.0000 120 chrX:8141490-8141610 1.0000 120 chrX:17780450-17780570 1.0000 120 chr3L:19618400-19618520 1.0000 120 chr3R:23387052-23387172 1.0000 120 chr3R:19491134-19491254 1.0000 120 chr3R:13078404-13078524 1.0000 120 chr2L:7635283-7635403 1.0000 120 chr3L:12668194-12668314 1.0000 120 chr3R:21850270-21850390 1.0000 120 chr3R:29255250-29255370 1.0000 120 chr4:210132-210252 1.0000 120 chr3R:25490345-25490465 1.0000 120 chrX:2340259-2340379 1.0000 120 chr2L:6700804-6700924 1.0000 120 chr2L:5245733-5245853 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG8089/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8089.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.201 G 0.198 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.201 G 0.198 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGGCAGC MEME-1 width = 8 sites = 10 llr = 109 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::8:: pos.-specific C 1a11a::a probability G 9:99:1a: matrix T :::::1:: bits 2.3 * * ** 2.1 * * ** 1.9 ***** ** 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5300760-5300880 66 3.77e-06 CGCCCGTGGA GCGGCAGC AACGGTATAA chr3R:11372722-11372842 21 3.77e-06 AATCGCAGTG GCGGCAGC AGTCGCAGTC chr3L:16714281-16714401 1 3.77e-06 . GCGGCAGC GGCGCGGCAG chr2R:6788974-6789094 53 3.77e-06 ATTAATTTCT GCGGCAGC ACTAAAGTAT chr2R:5413513-5413633 45 3.77e-06 TTGTGAGGTT GCGGCAGC TCTAGACTCG chr2R:14488427-14488547 32 6.24e-06 TGTCAAATGT GCGGCGGC CACAAAGATT chr3R:15920843-15920963 8 9.97e-06 CTCTTTT GCGGCTGC CGTGGCCGCG chr3L:4227195-4227315 109 2.15e-05 TGAATTGGTG GCCGCAGC GCTG chr4:695262-695382 54 2.15e-05 GAAGCGCGAT GCGCCAGC AGAAAATGAC chr2R:1264271-1264391 74 2.15e-05 CATGGTAATG CCGGCAGC TTGACGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5300760-5300880 3.8e-06 65_[+1]_47 chr3R:11372722-11372842 3.8e-06 20_[+1]_92 chr3L:16714281-16714401 3.8e-06 [+1]_112 chr2R:6788974-6789094 3.8e-06 52_[+1]_60 chr2R:5413513-5413633 3.8e-06 44_[+1]_68 chr2R:14488427-14488547 6.2e-06 31_[+1]_81 chr3R:15920843-15920963 1e-05 7_[+1]_105 chr3L:4227195-4227315 2.1e-05 108_[+1]_4 chr4:695262-695382 2.1e-05 53_[+1]_59 chr2R:1264271-1264391 2.1e-05 73_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCAGC width=8 seqs=10 chr3R:5300760-5300880 ( 66) GCGGCAGC 1 chr3R:11372722-11372842 ( 21) GCGGCAGC 1 chr3L:16714281-16714401 ( 1) GCGGCAGC 1 chr2R:6788974-6789094 ( 53) GCGGCAGC 1 chr2R:5413513-5413633 ( 45) GCGGCAGC 1 chr2R:14488427-14488547 ( 32) GCGGCGGC 1 chr3R:15920843-15920963 ( 8) GCGGCTGC 1 chr3L:4227195-4227315 ( 109) GCCGCAGC 1 chr4:695262-695382 ( 54) GCGCCAGC 1 chr2R:1264271-1264391 ( 74) CCGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.2e+001 -997 -101 219 -997 -997 231 -997 -997 -997 -101 219 -997 -997 -101 219 -997 -997 231 -997 -997 140 -997 -98 -158 -997 -997 234 -997 -997 231 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e+001 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.100000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 regular expression -------------------------------------------------------------------------------- GCGGCAGC -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCACAC MEME-2 width = 8 sites = 5 llr = 58 E-value = 8.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a:a: pos.-specific C :::a:a:a probability G a:a::::: matrix T :a:::::: bits 2.3 * ** * * 2.1 * ** * * 1.9 * ** * * 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19648730-19648850 67 8.68e-06 GTTTTCTAAA GTGCACAC AGGCTCCACC chr2L:6818502-6818622 66 8.68e-06 ATCAACAAAG GTGCACAC TGAGAACACA chr2R:4829191-4829311 25 8.68e-06 ATGGCAGTGT GTGCACAC TATTAGTGGA chr4:695262-695382 81 8.68e-06 CCACCCTAAT GTGCACAC AGTCGTAAAA chr4:1161357-1161477 33 8.68e-06 taatggctca gtgcacac aacacctggt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19648730-19648850 8.7e-06 66_[+2]_46 chr2L:6818502-6818622 8.7e-06 65_[+2]_47 chr2R:4829191-4829311 8.7e-06 24_[+2]_88 chr4:695262-695382 8.7e-06 80_[+2]_32 chr4:1161357-1161477 8.7e-06 32_[+2]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCACAC width=8 seqs=5 chr3R:19648730-19648850 ( 67) GTGCACAC 1 chr2L:6818502-6818622 ( 66) GTGCACAC 1 chr2R:4829191-4829311 ( 25) GTGCACAC 1 chr4:695262-695382 ( 81) GTGCACAC 1 chr4:1161357-1161477 ( 33) GTGCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9987 E= 8.9e+004 -897 -897 234 -897 -897 -897 -897 174 -897 -897 234 -897 -897 231 -897 -897 172 -897 -897 -897 -897 231 -897 -897 172 -897 -897 -897 -897 231 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCACAC MEME-2 regular expression -------------------------------------------------------------------------------- GTGCACAC -------------------------------------------------------------------------------- Time 13.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCCGTCC MEME-3 width = 8 sites = 8 llr = 85 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::99::a9 probability G a111a::: matrix T :9:::a:1 bits 2.3 * * * 2.1 * * * 1.9 * *** * 1.6 * ****** Relative 1.4 * ****** Entropy 1.2 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTCCGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12454203-12454323 16 5.72e-06 AGGTAGCTCT GTCCGTCC CGCTTTGGCA chrX:10115669-10115789 70 5.72e-06 CAACAAGCGG GTCCGTCC ATGTCTGCGA chr4:303888-304008 79 5.72e-06 aaccctttac gtccgtcc atctgCTCGC chr3R:5287426-5287546 88 5.72e-06 ACTGCGGTCC GTCCGTCC ACTGTGACGA chr4:1272196-1272316 98 9.51e-06 tttccattat ggccgtcc atttgttgct chr2L:7277084-7277204 54 2.08e-05 CGCGCCACAC GTGCGTCC ATCAGCTCGT chr3L:27083910-27084030 92 2.08e-05 ATTCACACAT GTCGGTCC CTCACTTCTT chr3L:23738565-23738685 32 2.93e-05 atatgaccat gtccgtct gtcagttttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12454203-12454323 5.7e-06 15_[+3]_97 chrX:10115669-10115789 5.7e-06 69_[+3]_43 chr4:303888-304008 5.7e-06 78_[+3]_34 chr3R:5287426-5287546 5.7e-06 87_[+3]_25 chr4:1272196-1272316 9.5e-06 97_[+3]_15 chr2L:7277084-7277204 2.1e-05 53_[+3]_59 chr3L:27083910-27084030 2.1e-05 91_[+3]_21 chr3L:23738565-23738685 2.9e-05 31_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCCGTCC width=8 seqs=8 chr2R:12454203-12454323 ( 16) GTCCGTCC 1 chrX:10115669-10115789 ( 70) GTCCGTCC 1 chr4:303888-304008 ( 79) GTCCGTCC 1 chr3R:5287426-5287546 ( 88) GTCCGTCC 1 chr4:1272196-1272316 ( 98) GGCCGTCC 1 chr2L:7277084-7277204 ( 54) GTGCGTCC 1 chr3L:27083910-27084030 ( 92) GTCGGTCC 1 chr3L:23738565-23738685 ( 32) GTCCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.9e+005 -965 -965 234 -965 -965 -965 -66 155 -965 212 -66 -965 -965 212 -66 -965 -965 -965 234 -965 -965 -965 -965 174 -965 231 -965 -965 -965 212 -965 -126 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.9e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCGTCC MEME-3 regular expression -------------------------------------------------------------------------------- GTCCGTCC -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGGCGGC MEME-4 width = 8 sites = 2 llr = 25 E-value = 6.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::a::a probability G ::aa:aa: matrix T a::::::: bits 2.3 ******* 2.1 ******* 1.9 ******* 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGGCGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6109985-6110105 59 3.73e-06 TACTTGTTTA TCGGCGGC GTCTCTCGCG chr3L:4227195-4227315 50 3.73e-06 TCAGTTGGCT TCGGCGGC TCTCAAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6109985-6110105 3.7e-06 58_[+4]_54 chr3L:4227195-4227315 3.7e-06 49_[+4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGGCGGC width=8 seqs=2 chrX:6109985-6110105 ( 59) TCGGCGGC 1 chr3L:4227195-4227315 ( 50) TCGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 6.2e+004 -765 -765 -765 174 -765 231 -765 -765 -765 -765 233 -765 -765 -765 233 -765 -765 231 -765 -765 -765 -765 233 -765 -765 -765 233 -765 -765 231 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.2e+004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGC MEME-4 regular expression -------------------------------------------------------------------------------- TCGGCGGC -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCSGCGG MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a5:a:: probability G a::5a:aa matrix T :a:::::: bits 2.3 * * **** 2.1 * * **** 1.9 * * **** 1.6 *** **** Relative 1.4 ******** Entropy 1.2 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTCCGCGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13817523-13817643 85 7.41e-06 CTGTCTCCGT GTCGGCGG ACATCTGCTT chr2R:5307553-5307673 5 7.41e-06 TGCC GTCCGCGG CCCATATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13817523-13817643 7.4e-06 84_[+5]_28 chr2R:5307553-5307673 7.4e-06 4_[+5]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCSGCGG width=8 seqs=2 chr3R:13817523-13817643 ( 85) GTCGGCGG 1 chr2R:5307553-5307673 ( 5) GTCCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 1.7e+005 -765 -765 233 -765 -765 -765 -765 174 -765 231 -765 -765 -765 131 133 -765 -765 -765 233 -765 -765 231 -765 -765 -765 -765 233 -765 -765 -765 233 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCSGCGG MEME-5 regular expression -------------------------------------------------------------------------------- GTC[CG]GCGG -------------------------------------------------------------------------------- Time 32.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:23689946-23690066 4.35e-01 120 chr2L:22367007-22367127 9.76e-01 120 chr2R:1521960-1522080 8.56e-01 120 chr3L:26371513-26371633 1.00e+00 120 chr3L:27176193-27176313 9.93e-01 120 chr3L:24083156-24083276 5.57e-01 120 chr3L:23215532-23215652 4.70e-01 120 chr2L:22573544-22573664 8.69e-01 120 chr2R:5416581-5416701 3.52e-01 120 chr2R:4594381-4594501 2.07e-01 120 chr2R:5519037-5519157 5.17e-01 120 chr3L:23063700-23063820 7.74e-02 120 chr2L:23023917-23024037 6.89e-01 120 chr4:238517-238637 9.89e-01 120 chr3L:15835271-15835391 9.91e-01 120 chr3L:28012604-28012724 9.83e-01 120 chr3R:3786877-3786997 2.56e-01 106_[+3(8.77e-05)]_6 chr2R:4546808-4546928 9.99e-01 120 chr4:1272196-1272316 3.63e-04 97_[+3(9.51e-06)]_15 chr3R:5287426-5287546 2.97e-04 83_[+3(5.72e-06)]_29 chr2R:5413513-5413633 2.26e-03 44_[+1(3.77e-06)]_68 chr2R:4621805-4621925 5.26e-01 120 chr4:1161357-1161477 6.17e-02 32_[+2(8.68e-06)]_46_[+2(6.92e-05)]_\ 26 chr2R:5417756-5417876 5.74e-01 120 chr2R:2846694-2846814 9.43e-01 120 chr2R:5529992-5530112 6.25e-01 120 chr2R:1527010-1527130 9.99e-01 120 chr2L:10231335-10231455 5.98e-01 120 chr2R:4649572-4649692 6.42e-01 120 chr3L:23738565-23738685 2.32e-01 31_[+3(2.93e-05)]_81 chr3L:27176394-27176514 9.81e-01 120 chr2R:4130861-4130981 8.53e-01 120 chr2R:3900944-3901064 6.84e-01 120 chr2R:4671681-4671801 8.60e-01 120 chr2R:5090476-5090596 7.14e-01 120 chr2L:22538142-22538262 4.56e-01 58_[+3(8.77e-05)]_54 chr2R:2124103-2124223 9.38e-01 120 chr2R:4618900-4619020 9.97e-01 120 chr2R:5307553-5307673 1.49e-04 4_[+5(7.41e-06)]_108 chr2L:23065312-23065432 9.88e-01 120 chr3L:24028387-24028507 8.13e-01 120 chr2R:1590388-1590508 8.34e-01 120 chr2L:23176203-23176323 1.00e+00 120 chr2L:1164536-1164656 7.31e-03 66_[+2(6.92e-05)]_46 chr2R:1264271-1264391 8.69e-03 73_[+1(2.15e-05)]_39 chr2R:1356225-1356345 8.10e-01 120 chr2R:4242956-4243076 5.81e-01 120 chr4:193843-193963 5.56e-01 120 chr2R:931264-931384 7.89e-01 120 chr4:688041-688161 9.81e-01 120 chr3R:3789773-3789893 9.86e-01 120 chr2R:4544701-4544821 6.11e-01 120 chr3L:23338049-23338169 7.21e-01 120 chr2L:23025514-23025634 6.42e-01 120 chr2R:2565342-2565462 8.76e-01 120 chr4:695262-695382 5.46e-04 53_[+1(2.15e-05)]_19_[+2(8.68e-06)]_\ 32 chr2L:21623793-21623913 9.69e-01 120 chr4:44849-44969 9.88e-01 120 chr3L:14166423-14166543 1.00e+00 120 chr2R:999969-1000089 2.81e-01 120 chr2R:4188126-4188246 1.08e-01 120 chr3L:26014179-26014299 8.86e-01 120 chr3R:2871320-2871440 5.97e-01 120 chr2R:4192921-4193041 7.53e-01 120 chr4:132063-132183 3.62e-01 120 chr4:1051390-1051510 8.49e-02 120 chr4:303888-304008 4.22e-02 78_[+3(5.72e-06)]_34 chr3L:27279191-27279311 9.63e-01 120 chr3L:25120630-25120750 7.49e-01 120 chr3L:25413041-25413161 5.53e-01 120 chr2R:5663839-5663959 1.46e-02 120 chr2L:19949739-19949859 1.00e+00 120 chr3L:15837425-15837545 7.26e-01 120 chr3L:24083371-24083491 8.36e-01 120 chr2R:5250896-5251016 7.49e-01 120 chr2R:4829191-4829311 5.88e-02 24_[+2(8.68e-06)]_88 chr2R:4012745-4012865 6.75e-01 120 chr2L:23174299-23174419 7.99e-01 120 chr3L:25115994-25116114 4.85e-01 120 chr3L:24537248-24537368 9.91e-01 120 chr2R:1345021-1345141 4.29e-01 120 chr2R:1649987-1650107 1.20e-01 120 chr3L:13295826-13295946 6.75e-01 120 chr2R:6788974-6789094 1.09e-04 52_[+1(3.77e-06)]_60 chr2R:5604802-5604922 9.86e-01 120 chr2R:4823777-4823897 9.77e-01 120 chr3R:5059484-5059604 2.73e-01 120 chr4:466578-466698 5.83e-01 120 chr2R:1995642-1995762 4.15e-01 120 chr2R:19971447-19971567 9.99e-01 120 chr4:1219048-1219168 9.99e-01 120 chr2L:22579059-22579179 4.56e-01 120 chr3L:27083910-27084030 1.08e-01 91_[+3(2.08e-05)]_21 chr2L:1399569-1399689 2.10e-01 120 chr2R:5340956-5341076 1.28e-01 52_[+3(8.77e-05)]_60 chr3R:3846674-3846794 9.99e-01 120 chr3L:27267160-27267280 9.96e-01 120 chr2L:22550150-22550270 9.89e-01 120 chr3L:11358884-11359004 4.49e-02 120 chrX:18239457-18239577 1.57e-01 120 chr2R:1071025-1071145 1.00e+00 120 chr4:313871-313991 9.59e-01 120 chr3L:27136388-27136508 9.56e-01 120 chr3L:24352760-24352880 1.32e-01 120 chr4:867057-867177 9.95e-01 120 chr2R:5128308-5128428 9.86e-01 120 chr3R:3750277-3750397 7.82e-01 120 chr4:314805-314925 6.04e-01 120 chr2R:6649249-6649369 2.69e-03 111_[+1(2.90e-05)]_1 chr2R:12587506-12587626 1.45e-01 120 chr3L:25271172-25271292 8.51e-01 120 chr2L:19399103-19399223 2.56e-01 120 chr2L:19424512-19424632 1.73e-03 120 chr2L:10497515-10497635 3.59e-01 120 chr3L:23258631-23258751 4.06e-01 120 chr4:179410-179530 5.82e-01 120 chr3L:23583634-23583754 4.71e-01 120 chr3R:16281635-16281755 1.40e-01 120 chr4:1181976-1182096 7.81e-01 120 chr2R:2959598-2959718 9.83e-01 120 chr2R:5352115-5352235 1.00e+00 120 chr3R:9875857-9875977 6.46e-05 68_[+5(7.41e-06)]_44 chr3R:16957902-16958022 4.70e-01 120 chr3R:15920843-15920963 2.70e-04 7_[+1(9.97e-06)]_105 chr2R:16785503-16785623 7.32e-01 120 chr3R:10154417-10154537 9.93e-01 120 chr2R:4013983-4014103 9.06e-01 120 chr2L:7277990-7278110 8.82e-01 120 chr2L:23315188-23315308 8.10e-01 120 chr2R:5090677-5090797 9.66e-01 120 chr3L:23580733-23580853 1.61e-01 120 chrX:18505276-18505396 9.13e-01 120 chr3L:16714281-16714401 9.19e-05 [+1(3.77e-06)]_112 chr4:70186-70306 7.38e-01 120 chr3L:23099567-23099687 2.44e-02 76_[+5(3.59e-05)]_36 chr2R:1264470-1264590 9.90e-01 120 chr2L:2873465-2873585 4.78e-01 120 chr2R:4827343-4827463 1.00e+00 120 chrX:772741-772861 2.39e-01 120 chr2L:3372813-3372933 5.73e-04 120 chr3R:3623136-3623256 9.69e-01 120 chr3L:11408836-11408956 2.76e-01 120 chr3R:31696846-31696966 7.99e-01 120 chr3L:24976126-24976246 9.81e-01 120 chr2L:1646678-1646798 7.00e-01 120 chrX:8542911-8543031 3.42e-01 120 chrX:582016-582136 3.37e-03 120 chrX:15653660-15653780 8.48e-01 120 chr2R:4729063-4729183 9.90e-01 120 chr2R:4243160-4243280 3.24e-01 120 chr3R:11372722-11372842 2.88e-05 20_[+1(3.77e-06)]_92 chrX:10115669-10115789 1.03e-03 69_[+3(5.72e-06)]_43 chr2R:8242703-8242823 5.33e-01 120 chr2L:7277084-7277204 1.18e-02 53_[+3(2.08e-05)]_59 chr2L:22131369-22131489 5.96e-01 120 chr4:905075-905195 8.76e-01 120 chr3L:4227195-4227315 4.75e-05 49_[+4(3.73e-06)]_51_[+1(2.15e-05)]_\ 4 chr2L:22169266-22169386 1.00e+00 120 chr2R:21848661-21848781 9.72e-01 120 chr2R:11969009-11969129 3.77e-01 120 chr3R:31549173-31549293 8.70e-01 120 chr4:482802-482922 9.42e-01 120 chrX:8491650-8491770 9.99e-01 120 chr2L:22981728-22981848 8.19e-01 120 chr3R:13817523-13817643 2.25e-03 84_[+5(7.41e-06)]_28 chr2R:10238140-10238260 4.33e-01 120 chrX:7162664-7162784 7.92e-02 120 chr2R:14432259-14432379 1.82e-01 120 chr4:205953-206073 8.01e-01 120 chr4:307986-308106 9.26e-01 120 chr3L:19190911-19191031 9.98e-01 120 chr2R:5293869-5293989 9.94e-01 120 chr4:43790-43910 8.89e-01 120 chr3L:20006864-20006984 9.64e-01 120 chr2L:22239779-22239899 9.11e-01 120 chr3R:5300760-5300880 1.04e-04 65_[+1(3.77e-06)]_47 chr3L:24537469-24537589 8.27e-01 120 chr2R:14488427-14488547 5.95e-05 31_[+1(6.24e-06)]_81 chr2R:22200034-22200154 6.90e-01 120 chrX:13253146-13253266 6.02e-03 120 chr2R:5363140-5363260 9.93e-01 120 chr2R:5967734-5967854 2.03e-01 120 chr2R:12454203-12454323 4.27e-02 15_[+3(5.72e-06)]_97 chr3R:11806900-11807020 1.00e+00 120 chrX:8671437-8671557 7.51e-01 120 chr2L:23068399-23068519 9.14e-01 120 chr2R:5122233-5122353 5.02e-01 120 chr3R:26436689-26436809 1.00e+00 120 chr3R:13885102-13885222 6.21e-01 120 chrX:13630435-13630555 9.23e-01 120 chr2L:21051920-21052040 2.08e-02 120 chr2R:14494808-14494928 1.27e-02 120 chrX:2166269-2166389 3.87e-01 120 chr2L:1428464-1428584 9.99e-01 120 chr2R:16848472-16848592 9.33e-01 120 chr2L:6818502-6818622 1.30e-02 65_[+2(8.68e-06)]_47 chrX:17582774-17582894 7.03e-01 120 chr2L:17583182-17583302 9.95e-01 120 chr2L:18930828-18930948 4.22e-01 120 chr2L:7339765-7339885 3.74e-01 120 chr4:787663-787783 9.99e-01 120 chr2L:20327556-20327676 3.51e-01 120 chr2R:19311045-19311165 6.51e-01 120 chr3R:19648730-19648850 4.85e-03 66_[+2(8.68e-06)]_46 chr3R:21377289-21377409 3.98e-01 120 chr2R:16610107-16610227 5.99e-01 120 chr4:670999-671119 9.71e-01 120 chrX:6109985-6110105 1.06e-04 58_[+4(3.73e-06)]_54 chr2L:3587393-3587513 9.44e-01 120 chr2R:24046757-24046877 7.11e-03 60_[+1(2.90e-05)]_52 chr2R:12274352-12274472 4.98e-05 96_[+4(1.25e-05)]_5_[+1(4.03e-05)]_\ 3 chr3L:1463779-1463899 1.91e-03 14_[+1(4.03e-05)]_98 chr2R:4744282-4744402 9.08e-01 120 chr3L:18242229-18242349 6.46e-01 120 chrX:11660595-11660715 9.11e-01 120 chr2L:16476755-16476875 1.33e-01 120 chr2R:6707828-6707948 1.64e-01 120 chr3R:24626217-24626337 8.21e-01 120 chr2L:8437296-8437416 1.20e-03 81_[+2(6.92e-05)]_31 chr3L:22407784-22407904 9.92e-02 120 chr2R:23668818-23668938 1.47e-01 16_[+1(7.12e-05)]_96 chr2L:9448888-9449008 8.98e-01 120 chr3R:25885269-25885389 8.61e-01 120 chr3R:29757368-29757488 8.78e-02 120 chr3L:6059209-6059329 4.39e-01 120 chr2L:1427922-1428042 8.03e-01 120 chrX:17820341-17820461 3.09e-01 120 chr3R:30767253-30767373 4.29e-01 120 chr3R:31060299-31060419 5.73e-01 120 chr2L:974257-974377 4.67e-02 120 chr3R:15670660-15670780 1.66e-02 120 chr3R:16625285-16625405 7.83e-01 120 chr3R:29251669-29251789 4.73e-01 120 chr3R:30164251-30164371 8.52e-01 120 chr3R:20276136-20276256 5.04e-02 120 chrX:8141490-8141610 1.84e-01 120 chrX:17780450-17780570 9.98e-01 120 chr3L:19618400-19618520 5.92e-01 120 chr3R:23387052-23387172 1.00e+00 120 chr3R:19491134-19491254 9.91e-01 120 chr3R:13078404-13078524 7.28e-01 120 chr2L:7635283-7635403 9.17e-01 120 chr3L:12668194-12668314 1.09e-01 120 chr3R:21850270-21850390 4.52e-01 120 chr3R:29255250-29255370 4.33e-01 120 chr4:210132-210252 8.45e-01 120 chr3R:25490345-25490465 6.56e-02 120 chrX:2340259-2340379 8.15e-01 120 chr2L:6700804-6700924 1.95e-01 120 chr2L:5245733-5245853 9.86e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************