******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7987.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:18812894-18813014 1.0000 120 chr2L:21299714-21299834 1.0000 120 chr2L:13804074-13804194 1.0000 120 chr2L:14712383-14712503 1.0000 120 chr3L:16824802-16824922 1.0000 120 chr3R:9891129-9891249 1.0000 120 chr3R:27293168-27293288 1.0000 120 chr3R:10097383-10097503 1.0000 120 chrX:19296145-19296265 1.0000 120 chr3L:16159379-16159499 1.0000 120 chr2L:21308125-21308245 1.0000 120 chrX:3440654-3440774 1.0000 120 chrX:19291905-19292025 1.0000 120 chr2L:8104846-8104966 1.0000 120 chrX:10347984-10348104 1.0000 120 chr2R:24959014-24959134 1.0000 120 chr2R:15863412-15863532 1.0000 120 chr2L:12487952-12488072 1.0000 120 chrX:7297912-7298032 1.0000 120 chr2L:8098484-8098604 1.0000 120 chr3R:11812870-11812990 1.0000 120 chr2R:21532228-21532348 1.0000 120 chr3R:30449516-30449636 1.0000 120 chr2R:18801177-18801297 1.0000 120 chr2R:12924640-12924760 1.0000 120 chr3R:30454625-30454745 1.0000 120 chr3L:3223568-3223688 1.0000 120 chr2R:14170983-14171103 1.0000 120 chr3L:14554192-14554312 1.0000 120 chr3L:2530195-2530315 1.0000 120 chr3R:9878771-9878891 1.0000 120 chrX:6983029-6983149 1.0000 120 chr3R:26258580-26258700 1.0000 120 chr2L:6089205-6089325 1.0000 120 chr3R:24568657-24568777 1.0000 120 chr2R:16824160-16824280 1.0000 120 chr3L:4416888-4417008 1.0000 120 chr3L:11721487-11721607 1.0000 120 chrX:1842973-1843093 1.0000 120 chr3R:17707203-17707323 1.0000 120 chr2L:2900532-2900652 1.0000 120 chr2R:8949326-8949446 1.0000 120 chr2L:137050-137170 1.0000 120 chr2L:3055859-3055979 1.0000 120 chr3R:5378205-5378325 1.0000 120 chr2R:24962632-24962752 1.0000 120 chr2L:9671178-9671298 1.0000 120 chr3R:29113547-29113667 1.0000 120 chr3R:27294246-27294366 1.0000 120 chr2L:1116739-1116859 1.0000 120 chr3L:3930093-3930213 1.0000 120 chr3L:9095817-9095937 1.0000 120 chr3R:22368361-22368481 1.0000 120 chr2L:21313174-21313294 1.0000 120 chr2R:21642119-21642239 1.0000 120 chr3L:16802289-16802409 1.0000 120 chr2R:13334934-13335054 1.0000 120 chr3L:12184699-12184819 1.0000 120 chr2R:10130270-10130390 1.0000 120 chr2R:24749462-24749582 1.0000 120 chrX:4703088-4703208 1.0000 120 chr3L:14559089-14559209 1.0000 120 chr3R:12439877-12439997 1.0000 120 chr2R:18815170-18815290 1.0000 120 chr3R:17714964-17715084 1.0000 120 chr2R:18695697-18695817 1.0000 120 chr3R:12442787-12442907 1.0000 120 chr3L:1940402-1940522 1.0000 120 chr2R:6033263-6033383 1.0000 120 chr3R:17002890-17003010 1.0000 120 chrX:599864-599984 1.0000 120 chr3L:3455290-3455410 1.0000 120 chr2L:7427560-7427680 1.0000 120 chr3L:14545250-14545370 1.0000 120 chrX:13637709-13637829 1.0000 120 chr3L:14987470-14987590 1.0000 120 chr2L:2801084-2801204 1.0000 120 chrX:946250-946370 1.0000 120 chr3L:1549260-1549380 1.0000 120 chr3R:31443218-31443338 1.0000 120 chr2L:15912534-15912654 1.0000 120 chr2L:3058567-3058687 1.0000 120 chr3L:8698027-8698147 1.0000 120 chr3R:23941050-23941170 1.0000 120 chr2L:12465281-12465401 1.0000 120 chr2L:485357-485477 1.0000 120 chrX:13635113-13635233 1.0000 120 chr3R:24564414-24564534 1.0000 120 chr2L:2806502-2806622 1.0000 120 chr3L:17948341-17948461 1.0000 120 chrX:10739903-10740023 1.0000 120 chr3R:12717949-12718069 1.0000 120 chrX:21065909-21066029 1.0000 120 chr3L:12841615-12841735 1.0000 120 chr3R:28327863-28327983 1.0000 120 chr2L:5945824-5945944 1.0000 120 chr3L:4219974-4220094 1.0000 120 chrX:17285223-17285343 1.0000 120 chr3R:9529786-9529906 1.0000 120 chr2L:3041942-3042062 1.0000 120 chr2R:21649352-21649472 1.0000 120 chr3R:10388240-10388360 1.0000 120 chr3R:16982365-16982485 1.0000 120 chr2L:2802460-2802580 1.0000 120 chr2R:23611949-23612069 1.0000 120 chr3L:626260-626380 1.0000 120 chr2L:1127457-1127577 1.0000 120 chr2R:6116725-6116845 1.0000 120 chr3L:12180854-12180974 1.0000 120 chr3L:1967517-1967637 1.0000 120 chr2R:22079489-22079609 1.0000 120 chrX:22487068-22487188 1.0000 120 chr3R:8809909-8810029 1.0000 120 chr2R:15999366-15999486 1.0000 120 chr3R:9494072-9494192 1.0000 120 chr3L:12796328-12796448 1.0000 120 chr3R:27925720-27925840 1.0000 120 chr2L:484736-484856 1.0000 120 chr3R:14705378-14705498 1.0000 120 chr2R:14488257-14488377 1.0000 120 chr3R:30106764-30106884 1.0000 120 chr2R:18806299-18806419 1.0000 120 chr3L:3037429-3037549 1.0000 120 chr2R:7987247-7987367 1.0000 120 chrX:5418050-5418170 1.0000 120 chr3L:16160509-16160629 1.0000 120 chr2L:6046336-6046456 1.0000 120 chr3R:27988243-27988363 1.0000 120 chr3R:22525622-22525742 1.0000 120 chrX:10462109-10462229 1.0000 120 chr3R:6401071-6401191 1.0000 120 chr2R:8457998-8458118 1.0000 120 chr3R:12720877-12720997 1.0000 120 chrX:15740615-15740735 1.0000 120 chr2L:12469328-12469448 1.0000 120 chr2L:14013536-14013656 1.0000 120 chr2R:8004663-8004783 1.0000 120 chr2L:487132-487252 1.0000 120 chr2L:7985466-7985586 1.0000 120 chr3L:483960-484080 1.0000 120 chr2L:7926181-7926301 1.0000 120 chr3R:9891703-9891823 1.0000 120 chr3L:4413883-4414003 1.0000 120 chr2L:1723534-1723654 1.0000 120 chr3L:13863537-13863657 1.0000 120 chr2L:6643522-6643642 1.0000 120 chr2R:15863614-15863734 1.0000 120 chr3L:16958813-16958933 1.0000 120 chr3R:31689745-31689865 1.0000 120 chr3L:16047259-16047379 1.0000 120 chr3R:23210905-23211025 1.0000 120 chr3R:5832741-5832861 1.0000 120 chr3L:8705209-8705329 1.0000 120 chrX:15080966-15081086 1.0000 120 chr2L:2872761-2872881 1.0000 120 chr3R:9337816-9337936 1.0000 120 chr3L:18993058-18993178 1.0000 120 chrX:11349898-11350018 1.0000 120 chr2R:10556319-10556439 1.0000 120 chr3R:5365121-5365241 1.0000 120 chrX:9580341-9580461 1.0000 120 chr3R:24582088-24582208 1.0000 120 chr3R:13446148-13446268 1.0000 120 chr3L:11125714-11125834 1.0000 120 chr2R:22538852-22538972 1.0000 120 chr2R:7532556-7532676 1.0000 120 chr3L:5180279-5180399 1.0000 120 chr2L:18629311-18629431 1.0000 120 chr3L:14547985-14548105 1.0000 120 chr3L:2469760-2469880 1.0000 120 chr3R:31592363-31592483 1.0000 120 chr3R:9573387-9573507 1.0000 120 chr3R:31221425-31221545 1.0000 120 chr2R:22368764-22368884 1.0000 120 chr2L:479714-479834 1.0000 120 chr2L:18717494-18717614 1.0000 120 chr2R:18811750-18811870 1.0000 120 chr3R:29087564-29087684 1.0000 120 chr3L:19872543-19872663 1.0000 120 chr3L:12507734-12507854 1.0000 120 chr3R:10166478-10166598 1.0000 120 chrX:16420172-16420292 1.0000 120 chr3R:13684209-13684329 1.0000 120 chr3R:10681526-10681646 1.0000 120 chr3R:29066435-29066555 1.0000 120 chr3L:12392966-12393086 1.0000 120 chr2L:20390125-20390245 1.0000 120 chr3L:18833415-18833535 1.0000 120 chr3L:11323637-11323757 1.0000 120 chrX:10370429-10370549 1.0000 120 chr2L:5303744-5303864 1.0000 120 chr2L:3572752-3572872 1.0000 120 chr2L:10397067-10397187 1.0000 120 chr2R:13336784-13336904 1.0000 120 chr3L:19813484-19813604 1.0000 120 chr3L:3417869-3417989 1.0000 120 chr3L:12482416-12482536 1.0000 120 chr2L:3228846-3228966 1.0000 120 chr2L:18566421-18566541 1.0000 120 chr2L:1122227-1122347 1.0000 120 chr2L:12509602-12509722 1.0000 120 chr3R:30103002-30103122 1.0000 120 chr2L:1077130-1077250 1.0000 120 chr3L:14055884-14056004 1.0000 120 chr2R:23693895-23694015 1.0000 120 chr3R:23764062-23764182 1.0000 120 chr3L:18020986-18021106 1.0000 120 chr3L:17006225-17006345 1.0000 120 chr2L:1636647-1636767 1.0000 120 chrX:7227465-7227585 1.0000 120 chr2L:3121860-3121980 1.0000 120 chr3L:19169168-19169288 1.0000 120 chr3R:10186190-10186310 1.0000 120 chr3L:17001144-17001264 1.0000 120 chr2L:4829178-4829298 1.0000 120 chr2R:17585229-17585349 1.0000 120 chr2R:7694279-7694399 1.0000 120 chr3L:17754466-17754586 1.0000 120 chr3L:17531552-17531672 1.0000 120 chr3R:18740647-18740767 1.0000 120 chr3R:27289790-27289910 1.0000 120 chr2R:19266353-19266473 1.0000 120 chr2L:11845275-11845395 1.0000 120 chr3L:6612777-6612897 1.0000 120 chrX:8624986-8625106 1.0000 120 chr3R:13441860-13441980 1.0000 120 chr2R:22539482-22539602 1.0000 120 chrX:1051421-1051541 1.0000 120 chr2R:25012069-25012189 1.0000 120 chr3L:1859697-1859817 1.0000 120 chr2R:16017713-16017833 1.0000 120 chrX:8199097-8199217 1.0000 120 chr3R:8980892-8981012 1.0000 120 chr3R:5081802-5081922 1.0000 120 chr2R:22390397-22390517 1.0000 120 chr2L:5100134-5100254 1.0000 120 chrX:1232705-1232825 1.0000 120 chr3R:5320797-5320917 1.0000 120 chr3L:11291301-11291421 1.0000 120 chr2L:10986201-10986321 1.0000 120 chr3L:11528458-11528578 1.0000 120 chr3L:17539053-17539173 1.0000 120 chr3L:20006803-20006923 1.0000 120 chr3L:8700447-8700567 1.0000 120 chr2L:20840575-20840695 1.0000 120 chr3R:14709154-14709274 1.0000 120 chr2R:12928644-12928764 1.0000 120 chr2L:10004702-10004822 1.0000 120 chr3R:20311559-20311679 1.0000 120 chr2R:18435373-18435493 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7987/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7987.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.24 G 0.242 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.24 G 0.242 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACGCDSY MEME-1 width = 8 sites = 52 llr = 415 E-value = 3.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::3:2 pos.-specific C a:a:a165 probability G :::a:342 matrix T :::::3:2 bits 2.1 ***** 1.9 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ***** * (11.5 bits) 0.8 ***** * 0.6 ***** * 0.4 ***** * 0.2 ******** 0.0 -------- Multilevel CACGCACC consensus TGT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6643522-6643642 58 1.28e-05 CAGCCATAAA CACGCACC GAAATTGTAA chrX:4703088-4703208 62 1.28e-05 CGTGACTGTT CACGCACC ATATAACATA chr2L:14712383-14712503 50 1.28e-05 TATCAAAAGC CACGCACC TGGCGCCTGT chr2L:15912534-15912654 43 3.78e-05 GTGCATCTCG CACGCTCC ACTCGAGTGA chr3L:3455290-3455410 71 3.78e-05 agtTCACAAC CACGCGCC CTGTGGCTGC chr2R:18695697-18695817 99 3.78e-05 AGACAAACAG CACGCGCC AAGTTAATGC chr2L:18812894-18813014 39 3.78e-05 TTATCTCGAT CACGCTCC CCACTCGTGA chr3R:5832741-5832861 70 5.07e-05 GCGTGCGGTT CACGCAGC CACTAACTGC chr2L:12469328-12469448 70 5.07e-05 ACGCCACGCA CACGCAGC GCATTTGTGA chr3R:17707203-17707323 37 5.07e-05 ACGTGCTGTT CACGCAGC ACAGTTTATT chr3R:10097383-10097503 36 5.07e-05 CTTTCATACG CACGCAGC GCCGATCTTG chrX:15740615-15740735 3 7.59e-05 GG CACGCTGC CGGCCTGGCT chr2L:3041942-3042062 43 7.59e-05 GATTCCGCAG CACGCGGC CAGCCGGCTC chr3L:17948341-17948461 74 7.59e-05 TGGTGCTGAG CACGCGGC ACATAAATGA chrX:599864-599984 17 7.59e-05 GCGACGTTTA CACGCTGC GCCAAGCTGA chr2R:13334934-13335054 85 7.59e-05 GCACATGGGG CACGCGGC AGCTGGCTGA chr3L:3223568-3223688 96 7.59e-05 AAAAGAAAAA CACGCTGC TGGGGTGTGA chrX:19296145-19296265 41 7.59e-05 TTTTCGAGAT CACGCGGC GGGTGCGTGA chr2L:13804074-13804194 80 7.59e-05 CTCATTTGCA CACGCTGC GCATGCGTGT chr2L:10004702-10004822 19 8.98e-05 TGCCCGCAGC CACGCACT TGCACACATT chr3R:31689745-31689865 46 8.98e-05 AGCTCGAAGG CACGCACT AGCCGCATGC chr3R:22368361-22368481 88 8.98e-05 AGTAGATGCT CACGCACT TGCATAATGG chr3R:30103002-30103122 44 1.17e-04 acgggggctt cacgCGCT CAGCGCTTGA chr2L:7926181-7926301 51 1.17e-04 GGAACAAAAA CACGCTCT AGCATCATGC chr2L:2806502-2806622 30 1.17e-04 TGCTTCTGAT CACGCGCT GGTGGCGTGC chr2L:7427560-7427680 51 1.17e-04 AGGTCGAATA CACGCTCT CCTATATCGC chr3R:12442787-12442907 33 1.17e-04 AGTGAAGCAT CACGCTCT TGCAACGTGA chr2R:8949326-8949446 30 1.17e-04 CCACTGATAG CACGCTCT CTTGTCGGCA chr2R:19266353-19266473 104 1.58e-04 TTTTGGAAGA CACGCACA TGGGACGTG chr3R:31592363-31592483 38 1.58e-04 ATGTTCTGGG CACGCACG TGATTGGTGG chr2R:15999366-15999486 27 1.58e-04 TCCCAATCTC CACGCACG CTTATCGTGT chr2R:23611949-23612069 81 1.58e-04 CGGCAAGATC CACGCACA CGGCTCGAAA chr3L:1549260-1549380 82 1.58e-04 TATTGTTAGC CACGCACG AGACAGCTGA chr2L:3055859-3055979 105 1.58e-04 ACATCTCCGT CACGCACA CAACAGCT chr2R:12928644-12928764 97 1.97e-04 CTGCCCCTGC CACGCCCC CGCCGGACCC chr2R:6116725-6116845 38 1.97e-04 TTCAGACGAG CACGCGGT GCGCCCCAGA chrX:946250-946370 24 1.97e-04 CATCGGGGAA CACGCGGT TACCCCCTGC chr3R:12439877-12439997 55 1.97e-04 TTAGCGCGCG CACGCCCC GGTGACGTCA chr3L:14559089-14559209 99 1.97e-04 CACAAACACA CACGCCCC TTTTGCGCCT chr3L:2530195-2530315 56 1.97e-04 CCACAACAAT CACGCCCC TAGCTCATGG chr3R:27293168-27293288 37 1.97e-04 TTCACGTGAT CACGCGGT GGTTGAATTT chr2L:18629311-18629431 67 2.49e-04 AGCGGTTGTT CACGCTCA ATTTGCATGC chr3L:3037429-3037549 2 2.49e-04 G CACGCTCA CCAGCTCTGG chr3R:24568657-24568777 110 2.49e-04 GATAAGCGGA CACGCTCA ATG chr2L:21308125-21308245 66 2.49e-04 TGAGCGTTAT CACGCTCG AAACGCGTGA chr2R:10130270-10130390 46 2.76e-04 GCTCCAAAAT CACGCAGG GTCCCTGCAC chr3R:29113547-29113667 104 2.76e-04 TGGGCAAGGT CACGCAGA ATATGTGTG chr2L:21299714-21299834 53 2.88e-04 CGTCGACGAT CACGCCGC AATCGAGTGA chr3L:8700447-8700567 87 3.40e-04 TTTCGGTGGG CACGCGGG CAGGTCGTCG chrX:10370429-10370549 18 3.40e-04 ACTTCACCTC CACGCTGG GCGATAAGGC chrX:5418050-5418170 43 3.40e-04 TTTTGAATGC CACGCGGA AGGGAAAAAC chr3R:5378205-5378325 68 3.40e-04 TCGGATGATC CACGCGGG TATTGACTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6643522-6643642 1.3e-05 57_[+1]_55 chrX:4703088-4703208 1.3e-05 61_[+1]_51 chr2L:14712383-14712503 1.3e-05 49_[+1]_63 chr2L:15912534-15912654 3.8e-05 42_[+1]_70 chr3L:3455290-3455410 3.8e-05 70_[+1]_42 chr2R:18695697-18695817 3.8e-05 98_[+1]_14 chr2L:18812894-18813014 3.8e-05 38_[+1]_74 chr3R:5832741-5832861 5.1e-05 69_[+1]_43 chr2L:12469328-12469448 5.1e-05 69_[+1]_43 chr3R:17707203-17707323 5.1e-05 36_[+1]_76 chr3R:10097383-10097503 5.1e-05 35_[+1]_77 chrX:15740615-15740735 7.6e-05 2_[+1]_110 chr2L:3041942-3042062 7.6e-05 42_[+1]_70 chr3L:17948341-17948461 7.6e-05 73_[+1]_39 chrX:599864-599984 7.6e-05 16_[+1]_96 chr2R:13334934-13335054 7.6e-05 84_[+1]_28 chr3L:3223568-3223688 7.6e-05 95_[+1]_17 chrX:19296145-19296265 7.6e-05 40_[+1]_72 chr2L:13804074-13804194 7.6e-05 79_[+1]_33 chr2L:10004702-10004822 9e-05 18_[+1]_94 chr3R:31689745-31689865 9e-05 45_[+1]_67 chr3R:22368361-22368481 9e-05 87_[+1]_25 chr3R:30103002-30103122 0.00012 43_[+1]_69 chr2L:7926181-7926301 0.00012 50_[+1]_62 chr2L:2806502-2806622 0.00012 29_[+1]_83 chr2L:7427560-7427680 0.00012 50_[+1]_62 chr3R:12442787-12442907 0.00012 32_[+1]_80 chr2R:8949326-8949446 0.00012 29_[+1]_83 chr2R:19266353-19266473 0.00016 103_[+1]_9 chr3R:31592363-31592483 0.00016 37_[+1]_75 chr2R:15999366-15999486 0.00016 26_[+1]_86 chr2R:23611949-23612069 0.00016 80_[+1]_32 chr3L:1549260-1549380 0.00016 81_[+1]_31 chr2L:3055859-3055979 0.00016 104_[+1]_8 chr2R:12928644-12928764 0.0002 96_[+1]_16 chr2R:6116725-6116845 0.0002 37_[+1]_75 chrX:946250-946370 0.0002 23_[+1]_89 chr3R:12439877-12439997 0.0002 54_[+1]_58 chr3L:14559089-14559209 0.0002 98_[+1]_14 chr3L:2530195-2530315 0.0002 55_[+1]_57 chr3R:27293168-27293288 0.0002 36_[+1]_76 chr2L:18629311-18629431 0.00025 66_[+1]_46 chr3L:3037429-3037549 0.00025 1_[+1]_111 chr3R:24568657-24568777 0.00025 109_[+1]_3 chr2L:21308125-21308245 0.00025 65_[+1]_47 chr2R:10130270-10130390 0.00028 45_[+1]_67 chr3R:29113547-29113667 0.00028 103_[+1]_9 chr2L:21299714-21299834 0.00029 52_[+1]_60 chr3L:8700447-8700567 0.00034 86_[+1]_26 chrX:10370429-10370549 0.00034 17_[+1]_95 chrX:5418050-5418170 0.00034 42_[+1]_70 chr3R:5378205-5378325 0.00034 67_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGCDSY width=8 seqs=52 chr2L:6643522-6643642 ( 58) CACGCACC 1 chrX:4703088-4703208 ( 62) CACGCACC 1 chr2L:14712383-14712503 ( 50) CACGCACC 1 chr2L:15912534-15912654 ( 43) CACGCTCC 1 chr3L:3455290-3455410 ( 71) CACGCGCC 1 chr2R:18695697-18695817 ( 99) CACGCGCC 1 chr2L:18812894-18813014 ( 39) CACGCTCC 1 chr3R:5832741-5832861 ( 70) CACGCAGC 1 chr2L:12469328-12469448 ( 70) CACGCAGC 1 chr3R:17707203-17707323 ( 37) CACGCAGC 1 chr3R:10097383-10097503 ( 36) CACGCAGC 1 chrX:15740615-15740735 ( 3) CACGCTGC 1 chr2L:3041942-3042062 ( 43) CACGCGGC 1 chr3L:17948341-17948461 ( 74) CACGCGGC 1 chrX:599864-599984 ( 17) CACGCTGC 1 chr2R:13334934-13335054 ( 85) CACGCGGC 1 chr3L:3223568-3223688 ( 96) CACGCTGC 1 chrX:19296145-19296265 ( 41) CACGCGGC 1 chr2L:13804074-13804194 ( 80) CACGCTGC 1 chr2L:10004702-10004822 ( 19) CACGCACT 1 chr3R:31689745-31689865 ( 46) CACGCACT 1 chr3R:22368361-22368481 ( 88) CACGCACT 1 chr3R:30103002-30103122 ( 44) CACGCGCT 1 chr2L:7926181-7926301 ( 51) CACGCTCT 1 chr2L:2806502-2806622 ( 30) CACGCGCT 1 chr2L:7427560-7427680 ( 51) CACGCTCT 1 chr3R:12442787-12442907 ( 33) CACGCTCT 1 chr2R:8949326-8949446 ( 30) CACGCTCT 1 chr2R:19266353-19266473 ( 104) CACGCACA 1 chr3R:31592363-31592483 ( 38) CACGCACG 1 chr2R:15999366-15999486 ( 27) CACGCACG 1 chr2R:23611949-23612069 ( 81) CACGCACA 1 chr3L:1549260-1549380 ( 82) CACGCACG 1 chr2L:3055859-3055979 ( 105) CACGCACA 1 chr2R:12928644-12928764 ( 97) CACGCCCC 1 chr2R:6116725-6116845 ( 38) CACGCGGT 1 chrX:946250-946370 ( 24) CACGCGGT 1 chr3R:12439877-12439997 ( 55) CACGCCCC 1 chr3L:14559089-14559209 ( 99) CACGCCCC 1 chr3L:2530195-2530315 ( 56) CACGCCCC 1 chr3R:27293168-27293288 ( 37) CACGCGGT 1 chr2L:18629311-18629431 ( 67) CACGCTCA 1 chr3L:3037429-3037549 ( 2) CACGCTCA 1 chr3R:24568657-24568777 ( 110) CACGCTCA 1 chr2L:21308125-21308245 ( 66) CACGCTCG 1 chr2R:10130270-10130390 ( 46) CACGCAGG 1 chr3R:29113547-29113667 ( 104) CACGCAGA 1 chr2L:21299714-21299834 ( 53) CACGCCGC 1 chr3L:8700447-8700567 ( 87) CACGCGGG 1 chrX:10370429-10370549 ( 18) CACGCTGG 1 chrX:5418050-5418170 ( 43) CACGCGGA 1 chr3R:5378205-5378325 ( 68) CACGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 3.3e-003 -1234 206 -1234 -1234 196 -1234 -1234 -1234 -1234 206 -1234 -1234 -1234 -1234 204 -1234 -1234 206 -1234 -1234 43 -132 15 15 -1234 126 80 -1234 -74 94 -66 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 3.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.346154 0.096154 0.269231 0.288462 0.000000 0.576923 0.423077 0.000000 0.153846 0.461538 0.153846 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCDSY MEME-1 regular expression -------------------------------------------------------------------------------- CACGC[ATG][CG][CT] -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACGTGM MEME-2 width = 8 sites = 42 llr = 360 E-value = 3.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:7::::5 pos.-specific C :a:a:::3 probability G 2:3:a:a: matrix T 6::::a:2 bits 2.1 * ** * 1.9 * **** 1.6 * **** 1.4 * **** Relative 1.2 * **** Entropy 1.0 ****** (12.4 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACGTGA consensus A G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18740647-18740767 84 1.52e-05 AAATCTTTGG TCACGTGA CCAGCGGTGC chr2R:18806299-18806419 82 1.52e-05 GGAGCCTCGT TCACGTGA TAACCATGTG chr3R:9494072-9494192 47 1.52e-05 TAATCAGTGA TCACGTGA AGCACTCGCG chr3L:4219974-4220094 70 1.52e-05 TCGACGAGAA TCACGTGA TTGTGTGGCC chrX:13635113-13635233 54 1.52e-05 TTGGCCCAAG TCACGTGA CGTGCGCGTG chr3L:14545250-14545370 27 1.52e-05 TCCGATCGAT TCACGTGA TCTTTGCATG chr2R:24749462-24749582 46 1.52e-05 TTCTCAGGTG TCACGTGA TCGTTTGCGG chr3R:27293168-27293288 28 1.52e-05 CGAACTTCAT TCACGTGA TCACGCGGTG chr2R:21649352-21649472 13 2.93e-05 CCCCGTGTGT TCACGTGC CACACGCTTG chr3R:17707203-17707323 25 2.93e-05 CGAGTCAAGT TCACGTGC TGTTCACGCA chr3L:2530195-2530315 18 2.93e-05 ATCTGACACC TCACGTGC CCCTCGAAAA chr2L:8098484-8098604 68 2.93e-05 AACTGTGCTT TCACGTGC GCAGCGCCTG chr2L:12487952-12488072 37 2.93e-05 CATTCATGTT TCACGTGC TAATCGTGTA chr3R:9891129-9891249 58 2.93e-05 CATGCTGCCA TCACGTGC TGTTGCTTGA chr3L:3930093-3930213 18 4.44e-05 CGTTAATTGG ACACGTGA TGCGGGGGTG chr2L:8104846-8104966 63 4.44e-05 CGGAAAAACA ACACGTGA CGAGTGGCTG chr3R:31221425-31221545 86 5.86e-05 CATTTGACCG TCGCGTGA TGTTCTCGGT chr3L:1967517-1967637 88 5.86e-05 CACTCAAGAA TCGCGTGA TCGAGATTTT chr2R:15863614-15863734 20 7.27e-05 TTGTTTGCTA GCACGTGA ACATTATCAA chr2L:1723534-1723654 78 7.27e-05 TTAATGCAAA GCACGTGA ACGTAGCATG chr2R:22079489-22079609 98 7.27e-05 AGCATGGTGC GCACGTGA GAAGTGCCAA chr3R:27294246-27294366 65 7.27e-05 TTCGCCAAGA GCACGTGA GTTGCGCGTC chr3R:30454625-30454745 61 7.27e-05 TCTGCGGAGG GCACGTGA ATGAAGCGTG chr3L:18993058-18993178 48 1.02e-04 GCAAACAAGA TCACGTGT TGTACTGGGG chr3L:8705209-8705329 62 1.02e-04 TTCAGCGGTA TCACGTGT TGCAGGCGAT chr3R:8809909-8810029 76 1.02e-04 AAAGCGCAAG TCACGTGT TCGCCGAGAT chr2L:5945824-5945944 75 1.02e-04 GGAGTGGAAT ACACGTGC TGGGAAAATG chr3L:1940402-1940522 72 1.02e-04 GACAATCTTC ACACGTGC TGGCTGCGTG chr3L:11721487-11721607 62 1.02e-04 AACGTGACGG TCACGTGT TCGTCCGCTG chr3R:9878771-9878891 71 1.02e-04 CATGTGATGG TCACGTGT GCGTGTGTGC chr2L:20840575-20840695 97 1.15e-04 TCATGGCGAT TCGCGTGC GTTTGGGGTT chr2R:12924640-12924760 100 1.15e-04 GTGTGAGTGA TCGCGTGC CACCCGCATG chr2L:18629311-18629431 30 1.28e-04 TCAATCACCC GCACGTGC TTGCGGGTTA chr3R:30106764-30106884 48 1.43e-04 CGTGATTAGC ACGCGTGA TAAGCGCGCC chr2L:1127457-1127577 70 1.43e-04 CACATGACAA ACGCGTGA ATTGGGCGTT chrX:4703088-4703208 49 1.43e-04 TGCGTGGCCG ACGCGTGA CTGTTCACGC chr2L:21308125-21308245 76 1.43e-04 CACGCTCGAA ACGCGTGA ACAAGCGGGA chr3R:10681526-10681646 28 1.71e-04 CTCTATTTAC ACACGTGT GCCGGTTGTG chr3L:11125714-11125834 43 1.98e-04 CATTTTCGGA TCGCGTGT GATGGAAAAA chr2R:8949326-8949446 83 1.98e-04 CATGCTCTAG ACGCGTGC CGCGAATTAG chr3R:24582088-24582208 70 2.25e-04 CGAGCGACAG GCGCGTGC ATGCGCCAAA chrX:5418050-5418170 109 2.25e-04 CATGCAAAGA GCGCGTGC GCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18740647-18740767 1.5e-05 83_[+2]_29 chr2R:18806299-18806419 1.5e-05 81_[+2]_31 chr3R:9494072-9494192 1.5e-05 46_[+2]_66 chr3L:4219974-4220094 1.5e-05 69_[+2]_43 chrX:13635113-13635233 1.5e-05 53_[+2]_59 chr3L:14545250-14545370 1.5e-05 26_[+2]_86 chr2R:24749462-24749582 1.5e-05 45_[+2]_67 chr3R:27293168-27293288 1.5e-05 27_[+2]_85 chr2R:21649352-21649472 2.9e-05 12_[+2]_100 chr3R:17707203-17707323 2.9e-05 24_[+2]_88 chr3L:2530195-2530315 2.9e-05 17_[+2]_95 chr2L:8098484-8098604 2.9e-05 67_[+2]_45 chr2L:12487952-12488072 2.9e-05 36_[+2]_76 chr3R:9891129-9891249 2.9e-05 57_[+2]_55 chr3L:3930093-3930213 4.4e-05 17_[+2]_95 chr2L:8104846-8104966 4.4e-05 62_[+2]_50 chr3R:31221425-31221545 5.9e-05 85_[+2]_27 chr3L:1967517-1967637 5.9e-05 87_[+2]_25 chr2R:15863614-15863734 7.3e-05 19_[+2]_93 chr2L:1723534-1723654 7.3e-05 77_[+2]_35 chr2R:22079489-22079609 7.3e-05 97_[+2]_15 chr3R:27294246-27294366 7.3e-05 64_[+2]_48 chr3R:30454625-30454745 7.3e-05 60_[+2]_52 chr3L:18993058-18993178 0.0001 47_[+2]_65 chr3L:8705209-8705329 0.0001 61_[+2]_51 chr3R:8809909-8810029 0.0001 75_[+2]_37 chr2L:5945824-5945944 0.0001 74_[+2]_38 chr3L:1940402-1940522 0.0001 71_[+2]_41 chr3L:11721487-11721607 0.0001 61_[+2]_51 chr3R:9878771-9878891 0.0001 70_[+2]_42 chr2L:20840575-20840695 0.00012 96_[+2]_16 chr2R:12924640-12924760 0.00012 99_[+2]_13 chr2L:18629311-18629431 0.00013 29_[+2]_83 chr3R:30106764-30106884 0.00014 47_[+2]_65 chr2L:1127457-1127577 0.00014 69_[+2]_43 chrX:4703088-4703208 0.00014 48_[+2]_64 chr2L:21308125-21308245 0.00014 75_[+2]_37 chr3R:10681526-10681646 0.00017 27_[+2]_85 chr3L:11125714-11125834 0.0002 42_[+2]_70 chr2R:8949326-8949446 0.0002 82_[+2]_30 chr3R:24582088-24582208 0.00023 69_[+2]_43 chrX:5418050-5418170 0.00023 108_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACGTGM width=8 seqs=42 chr3R:18740647-18740767 ( 84) TCACGTGA 1 chr2R:18806299-18806419 ( 82) TCACGTGA 1 chr3R:9494072-9494192 ( 47) TCACGTGA 1 chr3L:4219974-4220094 ( 70) TCACGTGA 1 chrX:13635113-13635233 ( 54) TCACGTGA 1 chr3L:14545250-14545370 ( 27) TCACGTGA 1 chr2R:24749462-24749582 ( 46) TCACGTGA 1 chr3R:27293168-27293288 ( 28) TCACGTGA 1 chr2R:21649352-21649472 ( 13) TCACGTGC 1 chr3R:17707203-17707323 ( 25) TCACGTGC 1 chr3L:2530195-2530315 ( 18) TCACGTGC 1 chr2L:8098484-8098604 ( 68) TCACGTGC 1 chr2L:12487952-12488072 ( 37) TCACGTGC 1 chr3R:9891129-9891249 ( 58) TCACGTGC 1 chr3L:3930093-3930213 ( 18) ACACGTGA 1 chr2L:8104846-8104966 ( 63) ACACGTGA 1 chr3R:31221425-31221545 ( 86) TCGCGTGA 1 chr3L:1967517-1967637 ( 88) TCGCGTGA 1 chr2R:15863614-15863734 ( 20) GCACGTGA 1 chr2L:1723534-1723654 ( 78) GCACGTGA 1 chr2R:22079489-22079609 ( 98) GCACGTGA 1 chr3R:27294246-27294366 ( 65) GCACGTGA 1 chr3R:30454625-30454745 ( 61) GCACGTGA 1 chr3L:18993058-18993178 ( 48) TCACGTGT 1 chr3L:8705209-8705329 ( 62) TCACGTGT 1 chr3R:8809909-8810029 ( 76) TCACGTGT 1 chr2L:5945824-5945944 ( 75) ACACGTGC 1 chr3L:1940402-1940522 ( 72) ACACGTGC 1 chr3L:11721487-11721607 ( 62) TCACGTGT 1 chr3R:9878771-9878891 ( 71) TCACGTGT 1 chr2L:20840575-20840695 ( 97) TCGCGTGC 1 chr2R:12924640-12924760 ( 100) TCGCGTGC 1 chr2L:18629311-18629431 ( 30) GCACGTGC 1 chr3R:30106764-30106884 ( 48) ACGCGTGA 1 chr2L:1127457-1127577 ( 70) ACGCGTGA 1 chrX:4703088-4703208 ( 49) ACGCGTGA 1 chr2L:21308125-21308245 ( 76) ACGCGTGA 1 chr3R:10681526-10681646 ( 28) ACACGTGT 1 chr3L:11125714-11125834 ( 43) TCGCGTGT 1 chr2R:8949326-8949446 ( 83) ACGCGTGC 1 chr3R:24582088-24582208 ( 70) GCGCGTGC 1 chrX:5418050-5418170 ( 109) GCGCGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 3.5e-005 -11 -1204 -35 114 -1204 206 -1204 -1204 147 -1204 24 -1204 -1204 206 -1204 -1204 -1204 -1204 204 -1204 -1204 -1204 -1204 194 -1204 -1204 204 -1204 96 47 -1204 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 3.5e-005 0.238095 0.000000 0.190476 0.571429 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.333333 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGM MEME-2 regular expression -------------------------------------------------------------------------------- [TA]C[AG]CGTG[AC] -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCGCCCC MEME-3 width = 8 sites = 2 llr = 23 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :aa:aaaa probability G :::a:::: matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23693895-23694015 30 1.19e-05 TAGACCGAGT ACCGCCCC GTTATCGATA chr3L:16824802-16824922 3 1.19e-05 CC ACCGCCCC CTGAGAGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23693895-23694015 1.2e-05 29_[+3]_83 chr3L:16824802-16824922 1.2e-05 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCGCCCC width=8 seqs=2 chr2R:23693895-23694015 ( 30) ACCGCCCC 1 chr3L:16824802-16824922 ( 3) ACCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.7e+005 195 -765 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 -765 204 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-3 regular expression -------------------------------------------------------------------------------- ACCGCCCC -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCTGCC MEME-4 width = 8 sites = 2 llr = 23 E-value = 2.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaa::aa probability G :::::a:: matrix T ::::a::: bits 2.1 **** *** 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCTGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12928644-12928764 84 1.20e-05 CCGTCTGCTC CCCCTGCC CCTGCCACGC chrX:946250-946370 35 1.20e-05 ACGCGGTTAC CCCCTGCC ACCTGCAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12928644-12928764 1.2e-05 83_[+4]_29 chrX:946250-946370 1.2e-05 34_[+4]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCTGCC width=8 seqs=2 chr2R:12928644-12928764 ( 84) CCCCTGCC 1 chrX:946250-946370 ( 35) CCCCTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.0e+005 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 -765 -765 194 -765 -765 204 -765 -765 205 -765 -765 -765 205 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCTGCC MEME-4 regular expression -------------------------------------------------------------------------------- CCCCTGCC -------------------------------------------------------------------------------- Time 25.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACAAAM MEME-5 width = 8 sites = 56 llr = 425 E-value = 2.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 Description -------------------------------------------------------------------------------- Simplified A a872aaa4 pos.-specific C :3:6:::4 probability G :::::::: matrix T ::33:::2 bits 2.1 * * * 1.9 * * * 1.6 * *** 1.4 * *** Relative 1.2 ** *** Entropy 1.0 *** *** (11.0 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAC consensus CTT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5320797-5320917 75 1.70e-05 CAACTTGAGC AAACAAAC AGCAGTAAGG chr2R:7694279-7694399 89 1.70e-05 ACAAATGCGT AAACAAAC AAAGAGAGTT chrX:7227465-7227585 73 1.70e-05 TCGGGAAATA AAACAAAC TTCTCTATAT chr2L:3228846-3228966 87 1.70e-05 ATGCAAAGCC AAACAAAC AGGCCGATAA chr3L:12482416-12482536 75 1.70e-05 CGTTCGGTGT AAACAAAC CGCAGTAGTT chr2L:20390125-20390245 103 1.70e-05 acagacaaac aaacaaac aaacCCTCGG chrX:22487068-22487188 94 1.70e-05 CGGATTGCCA AAACAAAC GGAACTTTTA chr2L:12465281-12465401 20 1.70e-05 TTTTTGAGGT AAACAAAC TTTGCTGATT chr2R:18435373-18435493 16 3.52e-05 AAGAGAGGGT AAACAAAA GTCTGGGGGG chr3L:19813484-19813604 45 5.24e-05 TCAGTTGATA AATCAAAC ACACACATGT chr3L:4219974-4220094 10 5.24e-05 GAAGAGGGC AATCAAAC AATTTAATCA chr3L:19169168-19169288 102 7.08e-05 GATTCGATTG AAATAAAC GAAAACTGTC chr2L:6643522-6643642 30 7.08e-05 TAAATTAAAT AAATAAAC CGCCCAAAAT chr3R:14705378-14705498 44 7.08e-05 GAACATGAAT AAATAAAC TGATACTGAT chrX:946250-946370 49 7.08e-05 TGCCACCTGC AAATAAAC AGCGGAATCC chr2L:5303744-5303864 22 1.05e-04 AGAAAACACT ACACAAAC CAGCACACCA chr3R:13446148-13446268 61 1.05e-04 GCACAATCGC AATCAAAA ACGACAAGAA chr3R:12717949-12718069 28 1.05e-04 TCCATGGGTA AATCAAAA CAAAGCTCAG chr2L:3055859-3055979 82 1.05e-04 ATGGCGGGCA AATCAAAA TTTCTACATC chr2L:11845275-11845395 112 1.61e-04 GAGTCAAAGC AAATAAAA T chr2L:1636647-1636767 64 1.61e-04 TTCAACAACG AAATAAAA TCAACAGAAA chr3R:6401071-6401191 111 1.61e-04 taaatgctat aaacaaat GA chr3L:17948341-17948461 2 1.61e-04 C AAATAAAA TGTATAACCA chr2L:3058567-3058687 34 1.61e-04 TTATCTCACT AAACAAAT GGTACACGCG chrX:19296145-19296265 5 1.61e-04 AAAA AAAAAAAC CACCTCCGTT chr3L:16824802-16824922 87 1.61e-04 ACAGACAAGC AAACAAAT GAGCGAGGGA chr2L:13804074-13804194 106 1.61e-04 GTTGCCAAAA AAAAAAAC GAGATCT chr3L:11291301-11291421 33 1.78e-04 ACAAAAACAC ACACAAAA GTCGATGCAA chr3L:5180279-5180399 23 1.78e-04 GGAGGAAAGT ACACAAAA TGTTTTATCA chr2L:8098484-8098604 95 1.78e-04 GCTAAAAATA ACACAAAA TCACATATGT chrX:3440654-3440774 21 1.78e-04 caccCCATTC ACACAAAA TCCCCACCCA chrX:8199097-8199217 88 1.98e-04 CACAACACGA AAAAAAAA GTGTGCGATA chr3L:3930093-3930213 100 1.98e-04 TATCGTTCGT AAAAAAAA GAGGCGCGTT chr2L:14712383-14712503 75 1.98e-04 TGTTCCCCTA AAAAAAAA TGGAAACCGG chr2L:2801084-2801204 93 2.17e-04 CGAAGAAGTT AATTAAAC GGCCAGTCCT chr2L:18566421-18566541 50 2.33e-04 CTGCGCCGCC ACTCAAAC AGTCGCCCAA chr3R:14709154-14709274 24 3.07e-04 TTTCGAGCTT AATCAAAT TACGCTATAA chr2L:10397067-10397187 108 3.07e-04 ACGCTTATGT ACATAAAC ACTCG chr3L:12392966-12393086 79 3.07e-04 GCCAATTATC ACATAAAC ACTCATAGAC chr2L:6046336-6046456 113 3.07e-04 ATGATAAGCG AATAAAAC chr3R:9529786-9529906 38 3.07e-04 AGGGGGAATT AATCAAAT CGAAAGAAAT chr3R:23941050-23941170 31 3.07e-04 ACCCCGGGCA AATTAAAA CCAGTTCTTT chr3R:12442787-12442907 73 3.07e-04 ACAATAACAA AATTAAAA CTACTCTCGT chr2L:12487952-12488072 94 3.07e-04 GTGTTTGTGC AATCAAAT CAATCTTAAG chr3R:9891703-9891823 74 3.44e-04 TTCTCACTGT AAATAAAT AAGGGCCCAT chr3R:22525622-22525742 24 3.44e-04 AGGAGCAATT ACTCAAAA AATTACTCAT chr2R:22079489-22079609 46 3.44e-04 CATTGAGATT ACTCAAAA TGTCCGCAAT chr3R:8980892-8981012 37 4.16e-04 TCATTATTAT ACACAAAT CAAGGAAAAT chr3R:10186190-10186310 33 4.16e-04 GCCCGTAACA ACAAAAAC ATGGCAATGA chr2L:18717494-18717614 9 4.16e-04 GAAAATTA ACAAAAAC CTTAACGGTA chr3L:11125714-11125834 65 4.16e-04 GAAAAAACCC AATAAAAA CAACACAGCT chr3R:30106764-30106884 92 4.16e-04 ACAAATGGGG AATAAAAA TAACAGACGG chr3L:3223568-3223688 6 4.16e-04 CATGT ACATAAAA ATGGCCGCCC chr3R:10388240-10388360 105 4.36e-04 AATTGAATAC AAAAAAAT AAGGCAAG chr2R:19266353-19266473 80 6.35e-04 CAGAAGTGGA AAACACAC ACATATTTTT chr2L:4829178-4829298 68 6.52e-04 TTACGTGTGC AAACACAA CAGCTCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5320797-5320917 1.7e-05 74_[+5]_38 chr2R:7694279-7694399 1.7e-05 88_[+5]_24 chrX:7227465-7227585 1.7e-05 72_[+5]_40 chr2L:3228846-3228966 1.7e-05 86_[+5]_26 chr3L:12482416-12482536 1.7e-05 74_[+5]_38 chr2L:20390125-20390245 1.7e-05 102_[+5]_10 chrX:22487068-22487188 1.7e-05 93_[+5]_19 chr2L:12465281-12465401 1.7e-05 19_[+5]_93 chr2R:18435373-18435493 3.5e-05 15_[+5]_97 chr3L:19813484-19813604 5.2e-05 44_[+5]_68 chr3L:4219974-4220094 5.2e-05 9_[+5]_103 chr3L:19169168-19169288 7.1e-05 101_[+5]_11 chr2L:6643522-6643642 7.1e-05 29_[+5]_83 chr3R:14705378-14705498 7.1e-05 43_[+5]_69 chrX:946250-946370 7.1e-05 48_[+5]_64 chr2L:5303744-5303864 0.0001 21_[+5]_91 chr3R:13446148-13446268 0.0001 60_[+5]_52 chr3R:12717949-12718069 0.0001 27_[+5]_85 chr2L:3055859-3055979 0.0001 81_[+5]_31 chr2L:11845275-11845395 0.00016 111_[+5]_1 chr2L:1636647-1636767 0.00016 63_[+5]_49 chr3R:6401071-6401191 0.00016 110_[+5]_2 chr3L:17948341-17948461 0.00016 1_[+5]_111 chr2L:3058567-3058687 0.00016 33_[+5]_79 chrX:19296145-19296265 0.00016 4_[+5]_108 chr3L:16824802-16824922 0.00016 86_[+5]_26 chr2L:13804074-13804194 0.00016 105_[+5]_7 chr3L:11291301-11291421 0.00018 32_[+5]_80 chr3L:5180279-5180399 0.00018 22_[+5]_90 chr2L:8098484-8098604 0.00018 94_[+5]_18 chrX:3440654-3440774 0.00018 20_[+5]_92 chrX:8199097-8199217 0.0002 87_[+5]_25 chr3L:3930093-3930213 0.0002 99_[+5]_13 chr2L:14712383-14712503 0.0002 74_[+5]_38 chr2L:2801084-2801204 0.00022 92_[+5]_20 chr2L:18566421-18566541 0.00023 49_[+5]_63 chr3R:14709154-14709274 0.00031 23_[+5]_89 chr2L:10397067-10397187 0.00031 107_[+5]_5 chr3L:12392966-12393086 0.00031 78_[+5]_34 chr2L:6046336-6046456 0.00031 112_[+5] chr3R:9529786-9529906 0.00031 37_[+5]_75 chr3R:23941050-23941170 0.00031 30_[+5]_82 chr3R:12442787-12442907 0.00031 72_[+5]_40 chr2L:12487952-12488072 0.00031 93_[+5]_19 chr3R:9891703-9891823 0.00034 73_[+5]_39 chr3R:22525622-22525742 0.00034 23_[+5]_89 chr2R:22079489-22079609 0.00034 45_[+5]_67 chr3R:8980892-8981012 0.00042 36_[+5]_76 chr3R:10186190-10186310 0.00042 32_[+5]_80 chr2L:18717494-18717614 0.00042 8_[+5]_104 chr3L:11125714-11125834 0.00042 64_[+5]_48 chr3R:30106764-30106884 0.00042 91_[+5]_21 chr3L:3223568-3223688 0.00042 5_[+5]_107 chr3R:10388240-10388360 0.00044 104_[+5]_8 chr2R:19266353-19266473 0.00064 79_[+5]_33 chr2L:4829178-4829298 0.00065 67_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACAAAM width=8 seqs=56 chr3R:5320797-5320917 ( 75) AAACAAAC 1 chr2R:7694279-7694399 ( 89) AAACAAAC 1 chrX:7227465-7227585 ( 73) AAACAAAC 1 chr2L:3228846-3228966 ( 87) AAACAAAC 1 chr3L:12482416-12482536 ( 75) AAACAAAC 1 chr2L:20390125-20390245 ( 103) AAACAAAC 1 chrX:22487068-22487188 ( 94) AAACAAAC 1 chr2L:12465281-12465401 ( 20) AAACAAAC 1 chr2R:18435373-18435493 ( 16) AAACAAAA 1 chr3L:19813484-19813604 ( 45) AATCAAAC 1 chr3L:4219974-4220094 ( 10) AATCAAAC 1 chr3L:19169168-19169288 ( 102) AAATAAAC 1 chr2L:6643522-6643642 ( 30) AAATAAAC 1 chr3R:14705378-14705498 ( 44) AAATAAAC 1 chrX:946250-946370 ( 49) AAATAAAC 1 chr2L:5303744-5303864 ( 22) ACACAAAC 1 chr3R:13446148-13446268 ( 61) AATCAAAA 1 chr3R:12717949-12718069 ( 28) AATCAAAA 1 chr2L:3055859-3055979 ( 82) AATCAAAA 1 chr2L:11845275-11845395 ( 112) AAATAAAA 1 chr2L:1636647-1636767 ( 64) AAATAAAA 1 chr3R:6401071-6401191 ( 111) AAACAAAT 1 chr3L:17948341-17948461 ( 2) AAATAAAA 1 chr2L:3058567-3058687 ( 34) AAACAAAT 1 chrX:19296145-19296265 ( 5) AAAAAAAC 1 chr3L:16824802-16824922 ( 87) AAACAAAT 1 chr2L:13804074-13804194 ( 106) AAAAAAAC 1 chr3L:11291301-11291421 ( 33) ACACAAAA 1 chr3L:5180279-5180399 ( 23) ACACAAAA 1 chr2L:8098484-8098604 ( 95) ACACAAAA 1 chrX:3440654-3440774 ( 21) ACACAAAA 1 chrX:8199097-8199217 ( 88) AAAAAAAA 1 chr3L:3930093-3930213 ( 100) AAAAAAAA 1 chr2L:14712383-14712503 ( 75) AAAAAAAA 1 chr2L:2801084-2801204 ( 93) AATTAAAC 1 chr2L:18566421-18566541 ( 50) ACTCAAAC 1 chr3R:14709154-14709274 ( 24) AATCAAAT 1 chr2L:10397067-10397187 ( 108) ACATAAAC 1 chr3L:12392966-12393086 ( 79) ACATAAAC 1 chr2L:6046336-6046456 ( 113) AATAAAAC 1 chr3R:9529786-9529906 ( 38) AATCAAAT 1 chr3R:23941050-23941170 ( 31) AATTAAAA 1 chr3R:12442787-12442907 ( 73) AATTAAAA 1 chr2L:12487952-12488072 ( 94) AATCAAAT 1 chr3R:9891703-9891823 ( 74) AAATAAAT 1 chr3R:22525622-22525742 ( 24) ACTCAAAA 1 chr2R:22079489-22079609 ( 46) ACTCAAAA 1 chr3R:8980892-8981012 ( 37) ACACAAAT 1 chr3R:10186190-10186310 ( 33) ACAAAAAC 1 chr2L:18717494-18717614 ( 9) ACAAAAAC 1 chr3L:11125714-11125834 ( 65) AATAAAAA 1 chr3R:30106764-30106884 ( 92) AATAAAAA 1 chr3L:3223568-3223688 ( 6) ACATAAAA 1 chr3R:10388240-10388360 ( 105) AAAAAAAT 1 chr2R:19266353-19266473 ( 80) AAACACAC 1 chr2L:4829178-4829298 ( 68) AAACACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 2.3e+005 196 -1245 -1245 -1245 154 6 -1245 -1245 144 -1245 -1245 23 -39 120 -1245 -5 196 -1245 -1245 -1245 190 -275 -1245 -1245 196 -1245 -1245 -1245 61 89 -1245 -69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 2.3e+005 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.696429 0.000000 0.000000 0.303571 0.196429 0.553571 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.964286 0.035714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.392857 0.446429 0.000000 0.160714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAM MEME-5 regular expression -------------------------------------------------------------------------------- A[AC][AT][CT]AAA[CA] -------------------------------------------------------------------------------- Time 32.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18812894-18813014 1.95e-02 38_[+1(3.78e-05)]_74 chr2L:21299714-21299834 1.95e-01 120 chr2L:13804074-13804194 3.27e-02 79_[+1(7.59e-05)]_33 chr2L:14712383-14712503 4.64e-03 49_[+1(1.28e-05)]_63 chr3L:16824802-16824922 1.35e-03 2_[+3(1.19e-05)]_110 chr3R:9891129-9891249 4.37e-02 57_[+2(2.93e-05)]_55 chr3R:27293168-27293288 1.80e-02 27_[+2(1.52e-05)]_85 chr3R:10097383-10097503 1.24e-01 35_[+1(5.07e-05)]_77 chrX:19296145-19296265 3.25e-03 40_[+1(7.59e-05)]_72 chr3L:16159379-16159499 8.96e-01 120 chr2L:21308125-21308245 4.16e-02 120 chrX:3440654-3440774 2.20e-03 120 chrX:19291905-19292025 9.84e-01 120 chr2L:8104846-8104966 8.34e-02 62_[+2(4.44e-05)]_50 chrX:10347984-10348104 1.92e-01 120 chr2R:24959014-24959134 7.61e-01 120 chr2R:15863412-15863532 1.57e-01 120 chr2L:12487952-12488072 8.17e-03 36_[+2(2.93e-05)]_76 chrX:7297912-7298032 3.81e-01 120 chr2L:8098484-8098604 7.17e-03 67_[+2(2.93e-05)]_45 chr3R:11812870-11812990 3.92e-02 120 chr2R:21532228-21532348 9.63e-01 120 chr3R:30449516-30449636 6.49e-01 120 chr2R:18801177-18801297 3.81e-01 120 chr2R:12924640-12924760 1.57e-01 120 chr3R:30454625-30454745 2.35e-01 60_[+2(7.27e-05)]_52 chr3L:3223568-3223688 1.03e-02 95_[+1(7.59e-05)]_17 chr2R:14170983-14171103 9.30e-01 120 chr3L:14554192-14554312 3.89e-01 120 chr3L:2530195-2530315 1.18e-03 17_[+2(2.93e-05)]_95 chr3R:9878771-9878891 3.24e-01 120 chrX:6983029-6983149 2.67e-01 120 chr3R:26258580-26258700 8.45e-01 120 chr2L:6089205-6089325 4.12e-01 120 chr3R:24568657-24568777 4.89e-02 120 chr2R:16824160-16824280 3.99e-02 54_[+4(1.20e-05)]_58 chr3L:4416888-4417008 7.54e-01 120 chr3L:11721487-11721607 1.73e-01 120 chrX:1842973-1843093 1.81e-01 120 chr3R:17707203-17707323 1.46e-02 24_[+2(2.93e-05)]_4_[+1(5.07e-05)]_\ 76 chr2L:2900532-2900652 7.77e-01 120 chr2R:8949326-8949446 3.27e-02 120 chr2L:137050-137170 2.01e-01 120 chr2L:3055859-3055979 1.12e-02 120 chr3R:5378205-5378325 2.37e-01 120 chr2R:24962632-24962752 9.56e-03 23_[+3(4.62e-05)]_89 chr2L:9671178-9671298 7.60e-01 120 chr3R:29113547-29113667 4.75e-01 120 chr3R:27294246-27294366 4.37e-01 64_[+2(7.27e-05)]_48 chr2L:1116739-1116859 8.01e-01 120 chr3L:3930093-3930213 3.77e-03 17_[+2(4.44e-05)]_95 chr3L:9095817-9095937 5.71e-01 120 chr3R:22368361-22368481 3.77e-02 87_[+1(8.98e-05)]_25 chr2L:21313174-21313294 4.53e-01 120 chr2R:21642119-21642239 1.84e-01 120 chr3L:16802289-16802409 8.16e-01 120 chr2R:13334934-13335054 3.76e-01 84_[+1(7.59e-05)]_28 chr3L:12184699-12184819 2.61e-01 120 chr2R:10130270-10130390 1.18e-01 120 chr2R:24749462-24749582 2.01e-01 45_[+2(1.52e-05)]_67 chrX:4703088-4703208 6.20e-03 61_[+1(1.28e-05)]_51 chr3L:14559089-14559209 2.74e-02 120 chr3R:12439877-12439997 6.46e-02 120 chr2R:18815170-18815290 6.52e-01 120 chr3R:17714964-17715084 4.79e-01 120 chr2R:18695697-18695817 3.98e-02 98_[+1(3.78e-05)]_14 chr3R:12442787-12442907 6.72e-02 120 chr3L:1940402-1940522 8.96e-02 120 chr2R:6033263-6033383 6.18e-01 120 chr3R:17002890-17003010 6.85e-01 120 chrX:599864-599984 6.81e-02 16_[+1(7.59e-05)]_96 chr3L:3455290-3455410 1.58e-01 70_[+1(3.78e-05)]_42 chr2L:7427560-7427680 1.25e-01 120 chr3L:14545250-14545370 2.88e-02 26_[+2(1.52e-05)]_86 chrX:13637709-13637829 6.90e-01 120 chr3L:14987470-14987590 9.13e-01 120 chr2L:2801084-2801204 3.22e-01 120 chrX:946250-946370 1.73e-04 34_[+4(1.20e-05)]_6_[+5(7.08e-05)]_\ 64 chr3L:1549260-1549380 8.16e-02 120 chr3R:31443218-31443338 4.55e-01 120 chr2L:15912534-15912654 1.17e-01 42_[+1(3.78e-05)]_70 chr2L:3058567-3058687 6.94e-02 120 chr3L:8698027-8698147 5.87e-02 120 chr3R:23941050-23941170 1.32e-01 120 chr2L:12465281-12465401 3.13e-02 19_[+5(1.70e-05)]_93 chr2L:485357-485477 6.67e-01 120 chrX:13635113-13635233 3.53e-02 53_[+2(1.52e-05)]_59 chr3R:24564414-24564534 4.10e-01 120 chr2L:2806502-2806622 1.87e-02 120 chr3L:17948341-17948461 4.63e-02 73_[+1(7.59e-05)]_39 chrX:10739903-10740023 5.64e-01 120 chr3R:12717949-12718069 2.80e-01 120 chrX:21065909-21066029 2.01e-01 120 chr3L:12841615-12841735 4.53e-01 120 chr3R:28327863-28327983 6.05e-01 120 chr2L:5945824-5945944 1.94e-01 120 chr3L:4219974-4220094 5.55e-03 9_[+5(5.24e-05)]_52_[+2(1.52e-05)]_\ 43 chrX:17285223-17285343 5.61e-01 120 chr3R:9529786-9529906 2.00e-01 120 chr2L:3041942-3042062 1.63e-02 42_[+1(7.59e-05)]_70 chr2R:21649352-21649472 2.99e-02 12_[+2(2.93e-05)]_100 chr3R:10388240-10388360 2.64e-01 120 chr3R:16982365-16982485 8.13e-02 120 chr2L:2802460-2802580 8.47e-01 120 chr2R:23611949-23612069 4.39e-02 120 chr3L:626260-626380 9.99e-01 120 chr2L:1127457-1127577 4.07e-01 120 chr2R:6116725-6116845 1.42e-02 120 chr3L:12180854-12180974 1.46e-01 120 chr3L:1967517-1967637 3.04e-01 87_[+2(5.86e-05)]_25 chr2R:22079489-22079609 8.83e-02 97_[+2(7.27e-05)]_15 chrX:22487068-22487188 4.08e-02 93_[+5(1.70e-05)]_19 chr3R:8809909-8810029 4.50e-01 120 chr2R:15999366-15999486 1.40e-01 120 chr3R:9494072-9494192 8.50e-03 46_[+2(1.52e-05)]_66 chr3L:12796328-12796448 2.34e-02 60_[+4(1.20e-05)]_52 chr3R:27925720-27925840 5.46e-01 120 chr2L:484736-484856 7.70e-01 120 chr3R:14705378-14705498 1.33e-01 43_[+5(7.08e-05)]_69 chr2R:14488257-14488377 7.42e-01 120 chr3R:30106764-30106884 3.11e-02 120 chr2R:18806299-18806419 6.80e-03 81_[+2(1.52e-05)]_31 chr3L:3037429-3037549 2.51e-03 19_[+3(1.19e-05)]_93 chr2R:7987247-7987367 6.41e-01 120 chrX:5418050-5418170 1.12e-01 120 chr3L:16160509-16160629 1.52e-01 120 chr2L:6046336-6046456 1.97e-01 120 chr3R:27988243-27988363 6.04e-01 120 chr3R:22525622-22525742 5.05e-01 120 chrX:10462109-10462229 9.98e-01 120 chr3R:6401071-6401191 2.64e-01 120 chr2R:8457998-8458118 9.10e-01 120 chr3R:12720877-12720997 9.17e-01 120 chrX:15740615-15740735 6.40e-02 2_[+1(7.59e-05)]_110 chr2L:12469328-12469448 5.66e-02 69_[+1(5.07e-05)]_43 chr2L:14013536-14013656 3.89e-01 120 chr2R:8004663-8004783 8.19e-01 120 chr2L:487132-487252 9.38e-01 120 chr2L:7985466-7985586 4.74e-01 120 chr3L:483960-484080 7.75e-01 120 chr2L:7926181-7926301 4.81e-02 120 chr3R:9891703-9891823 3.00e-01 120 chr3L:4413883-4414003 3.93e-01 120 chr2L:1723534-1723654 1.55e-01 77_[+2(7.27e-05)]_35 chr3L:13863537-13863657 4.72e-01 120 chr2L:6643522-6643642 4.68e-04 29_[+5(7.08e-05)]_20_[+1(1.28e-05)]_\ 55 chr2R:15863614-15863734 1.46e-01 19_[+2(7.27e-05)]_93 chr3L:16958813-16958933 6.54e-01 120 chr3R:31689745-31689865 2.27e-02 45_[+1(8.98e-05)]_67 chr3L:16047259-16047379 5.68e-02 120 chr3R:23210905-23211025 9.70e-01 120 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************