******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7786.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1043694-1043814 1.0000 120 chr2R:16856828-16856948 1.0000 120 chr2L:889917-890037 1.0000 120 chrX:3950374-3950494 1.0000 120 chr3R:23228731-23228851 1.0000 120 chr2L:3058838-3058958 1.0000 120 chr3L:627840-627960 1.0000 120 chr2L:7298901-7299021 1.0000 120 chr2R:20641545-20641665 1.0000 120 chr2R:24132833-24132953 1.0000 120 chr3R:10024173-10024293 1.0000 120 chr2R:7636646-7636766 1.0000 120 chrX:19494429-19494549 1.0000 120 chr2R:17160995-17161115 1.0000 120 chr2R:6589447-6589567 1.0000 120 chr2L:20078993-20079113 1.0000 120 chrX:13333036-13333156 1.0000 120 chrX:19665980-19666100 1.0000 120 chr3R:14656083-14656203 1.0000 120 chrX:948271-948391 1.0000 120 chr2R:23668855-23668975 1.0000 120 chrX:618668-618788 1.0000 120 chr2R:20529492-20529612 1.0000 120 chr2R:6938638-6938758 1.0000 120 chrX:18494302-18494422 1.0000 120 chr3R:9675091-9675211 1.0000 120 chr2L:9448850-9448970 1.0000 120 chr3R:8524459-8524579 1.0000 120 chr3L:20518262-20518382 1.0000 120 chr3R:31636706-31636826 1.0000 120 chrX:23010735-23010855 1.0000 120 chrX:18366692-18366812 1.0000 120 chrX:6663345-6663465 1.0000 120 chr4:1030991-1031111 1.0000 120 chr2R:20270962-20271082 1.0000 120 chr3R:30489961-30490081 1.0000 120 chr3L:15563569-15563689 1.0000 120 chr2L:19200356-19200476 1.0000 120 chr3L:3411901-3412021 1.0000 120 chrX:13253231-13253351 1.0000 120 chr3R:26555922-26556042 1.0000 120 chr3R:21161881-21162001 1.0000 120 chrX:2714851-2714971 1.0000 120 chr3L:94165-94285 1.0000 120 chr3R:15292458-15292578 1.0000 120 chr3R:28429690-28429810 1.0000 120 chr2L:309335-309455 1.0000 120 chr3L:22871069-22871189 1.0000 120 chr3R:21993068-21993188 1.0000 120 chr2R:23869610-23869730 1.0000 120 chr3R:5065164-5065284 1.0000 120 chr3L:3770973-3771093 1.0000 120 chr3R:6397757-6397877 1.0000 120 chr2R:20590633-20590753 1.0000 120 chr2L:6339642-6339762 1.0000 120 chrX:8863489-8863609 1.0000 120 chrX:17465674-17465794 1.0000 120 chr3R:24626287-24626407 1.0000 120 chr3R:16704390-16704510 1.0000 120 chr2R:6656310-6656430 1.0000 120 chr3L:16147910-16148030 1.0000 120 chr2L:1837829-1837949 1.0000 120 chr2L:1145108-1145228 1.0000 120 chr3R:27988934-27989054 1.0000 120 chr2L:5209949-5210069 1.0000 120 chr3R:4732487-4732607 1.0000 120 chrX:11350572-11350692 1.0000 120 chr2L:1427880-1428000 1.0000 120 chr2L:14359124-14359244 1.0000 120 chr2L:18678226-18678346 1.0000 120 chr3R:23941748-23941868 1.0000 120 chrX:13789142-13789262 1.0000 120 chr3R:23191540-23191660 1.0000 120 chr2R:13999266-13999386 1.0000 120 chr3L:11408866-11408986 1.0000 120 chr2L:9779234-9779354 1.0000 120 chr2R:9544921-9545041 1.0000 120 chr2L:3477367-3477487 1.0000 120 chr2R:20319611-20319731 1.0000 120 chrX:10473622-10473742 1.0000 120 chr2R:9553624-9553744 1.0000 120 chr3R:16355532-16355652 1.0000 120 chr2L:15432376-15432496 1.0000 120 chr2R:12537592-12537712 1.0000 120 chrX:6091221-6091341 1.0000 120 chrX:13630452-13630572 1.0000 120 chr3L:1609762-1609882 1.0000 120 chr3L:4353890-4354010 1.0000 120 chr2R:6781853-6781973 1.0000 120 chr2L:1207645-1207765 1.0000 120 chr2R:13008310-13008430 1.0000 120 chr3L:16149833-16149953 1.0000 120 chr3R:32051841-32051961 1.0000 120 chr2L:6956864-6956984 1.0000 120 chr2R:18421224-18421344 1.0000 120 chrX:5639259-5639379 1.0000 120 chrX:1478435-1478555 1.0000 120 chr2L:7494386-7494506 1.0000 120 chr2L:11829377-11829497 1.0000 120 chr3R:26892923-26893043 1.0000 120 chrX:19164880-19165000 1.0000 120 chr2R:7653901-7654021 1.0000 120 chr3L:10866746-10866866 1.0000 120 chr3L:5819407-5819527 1.0000 120 chr3R:31805399-31805519 1.0000 120 chr2L:11203767-11203887 1.0000 120 chr3R:18168565-18168685 1.0000 120 chrX:3173278-3173398 1.0000 120 chrX:6339092-6339212 1.0000 120 chr2R:24292816-24292936 1.0000 120 chrX:13676571-13676691 1.0000 120 chr3R:9055283-9055403 1.0000 120 chr3R:10699284-10699404 1.0000 120 chr2L:13206354-13206474 1.0000 120 chr2L:18377229-18377349 1.0000 120 chrX:8606317-8606437 1.0000 120 chr3R:7108270-7108390 1.0000 120 chr2L:14024806-14024926 1.0000 120 chr2L:18688816-18688936 1.0000 120 chr3R:30325523-30325643 1.0000 120 chrX:16102484-16102604 1.0000 120 chr3R:27289755-27289875 1.0000 120 chr3L:12409092-12409212 1.0000 120 chrX:4116907-4117027 1.0000 120 chr3L:1031039-1031159 1.0000 120 chrX:1477006-1477126 1.0000 120 chr2L:21619186-21619306 1.0000 120 chr2R:11178541-11178661 1.0000 120 chr2R:16202921-16203041 1.0000 120 chr2R:14411697-14411817 1.0000 120 chrX:3538938-3539058 1.0000 120 chrX:10387770-10387890 1.0000 120 chr2R:11094458-11094578 1.0000 120 chr3L:15235329-15235449 1.0000 120 chr3R:16655770-16655890 1.0000 120 chr2R:21910002-21910122 1.0000 120 chr3L:3450480-3450600 1.0000 120 chrX:15739060-15739180 1.0000 120 chr3L:12803702-12803822 1.0000 120 chr2L:12351023-12351143 1.0000 120 chr3L:13929292-13929412 1.0000 120 chr2R:7987890-7988010 1.0000 120 chr2R:9103173-9103293 1.0000 120 chr2L:9938073-9938193 1.0000 120 chr2R:22640190-22640310 1.0000 120 chr2L:7412284-7412404 1.0000 120 chr2L:3356494-3356614 1.0000 120 chrX:15120196-15120316 1.0000 120 chr2L:838160-838280 1.0000 120 chr2R:21527407-21527527 1.0000 120 chr3L:15098047-15098167 1.0000 120 chrX:15910129-15910249 1.0000 120 chrX:5892199-5892319 1.0000 120 chr3R:30134818-30134938 1.0000 120 chr2L:15254385-15254505 1.0000 120 chrX:20423836-20423956 1.0000 120 chr3R:18215445-18215565 1.0000 120 chr3R:9220131-9220251 1.0000 120 chrX:14602718-14602838 1.0000 120 chr2R:18277117-18277237 1.0000 120 chrX:617513-617633 1.0000 120 chr3L:13486727-13486847 1.0000 120 chr2L:18328883-18329003 1.0000 120 chrX:8233354-8233474 1.0000 120 chr2L:484334-484454 1.0000 120 chrX:10488048-10488168 1.0000 120 chrX:17330442-17330562 1.0000 120 chrX:1380486-1380606 1.0000 120 chrX:5671790-5671910 1.0000 120 chr3L:7861172-7861292 1.0000 120 chr2L:7532707-7532827 1.0000 120 chr3L:22277364-22277484 1.0000 120 chr2L:8894372-8894492 1.0000 120 chrX:4262796-4262916 1.0000 120 chr3L:21057127-21057247 1.0000 120 chrX:13391288-13391408 1.0000 120 chr3R:5613245-5613365 1.0000 120 chr3L:8526115-8526235 1.0000 120 chr3L:20389143-20389263 1.0000 120 chr3R:27130153-27130273 1.0000 120 chr2L:1158193-1158313 1.0000 120 chr3L:11258555-11258675 1.0000 120 chr2R:23818402-23818522 1.0000 120 chr2R:12037229-12037349 1.0000 120 chrX:8141565-8141685 1.0000 120 chr2L:5980939-5981059 1.0000 120 chrX:20394214-20394334 1.0000 120 chr3R:15263456-15263576 1.0000 120 chrX:20511552-20511672 1.0000 120 chrX:9137308-9137428 1.0000 120 chr3R:28857414-28857534 1.0000 120 chr2L:20890085-20890205 1.0000 120 chr3L:21516908-21517028 1.0000 120 chr3R:5856337-5856457 1.0000 120 chr3R:30304938-30305058 1.0000 120 chr3R:31060349-31060469 1.0000 120 chr2R:11095284-11095404 1.0000 120 chr2L:901572-901692 1.0000 120 chrX:5286005-5286125 1.0000 120 chr2R:23383488-23383608 1.0000 120 chr3L:21821780-21821900 1.0000 120 chr3R:27273619-27273739 1.0000 120 chr3L:11303998-11304118 1.0000 120 chr3R:23176858-23176978 1.0000 120 chr3L:16165771-16165891 1.0000 120 chr2L:21370976-21371096 1.0000 120 chr2R:19128016-19128136 1.0000 120 chr3R:9510284-9510404 1.0000 120 chr2L:1628245-1628365 1.0000 120 chrX:17176653-17176773 1.0000 120 chr3L:642937-643057 1.0000 120 chr2L:8554403-8554523 1.0000 120 chrX:6615577-6615697 1.0000 120 chr2L:15629926-15630046 1.0000 120 chr3L:9461735-9461855 1.0000 120 chrX:3690746-3690866 1.0000 120 chrX:1890066-1890186 1.0000 120 chr2R:17062659-17062779 1.0000 120 chr2L:20881494-20881614 1.0000 120 chrX:3068442-3068562 1.0000 120 chr2L:21260903-21261023 1.0000 120 chrX:2136473-2136593 1.0000 120 chrX:3672747-3672867 1.0000 120 chr2L:20715072-20715192 1.0000 120 chrX:13634261-13634381 1.0000 120 chrX:11451162-11451282 1.0000 120 chrX:14839851-14839971 1.0000 120 chr3L:21196716-21196836 1.0000 120 chr2R:17564740-17564860 1.0000 120 chr3L:8399245-8399365 1.0000 120 chr2L:3776183-3776303 1.0000 120 chr2R:24748935-24749055 1.0000 120 chr3R:23028645-23028765 1.0000 120 chr2L:21658597-21658717 1.0000 120 chr3L:5926142-5926262 1.0000 120 chr3L:554686-554806 1.0000 120 chrX:18370855-18370975 1.0000 120 chr2R:10066627-10066747 1.0000 120 chrX:22837498-22837618 1.0000 120 chr2L:8488860-8488980 1.0000 120 chr2L:14094785-14094905 1.0000 120 chr3L:3896785-3896905 1.0000 120 chr3R:17072673-17072793 1.0000 120 chr3R:15472760-15472880 1.0000 120 chr3R:13683804-13683924 1.0000 120 chrX:6375810-6375930 1.0000 120 chr2R:12605706-12605826 1.0000 120 chr3R:9370608-9370728 1.0000 120 chr2L:4971476-4971596 1.0000 120 chr3R:23335073-23335193 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7786/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7786.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.305 C 0.193 G 0.191 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.305 C 0.193 G 0.191 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCAGKGT MEME-1 width = 8 sites = 18 llr = 175 E-value = 6.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 1a7:1::1 probability G 9:3:93a: matrix T :::::7:9 bits 2.4 * * 2.1 * * 1.9 ** * * 1.7 ** ** * Relative 1.4 ***** * Entropy 1.2 ***** ** (14.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGTGT consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17072673-17072793 56 7.61e-06 AGCCAACACT GCCAGTGT TGCCAGACTG chrX:20511552-20511672 78 7.61e-06 TTTTTTCTCT GCCAGTGT TTAGCAATAA chr3R:15263456-15263576 30 7.61e-06 ATCATGGTTG GCCAGTGT TGGACACGTC chr2L:11829377-11829497 89 7.61e-06 CGATCGGCTG GCCAGTGT TGGTAAACAT chrX:18370855-18370975 20 1.23e-05 TCATTCCGCA GCCAGGGT CACACTTTAT chr3L:9461735-9461855 13 1.23e-05 TCTCCTGCCC GCCAGGGT TGCCAACCTC chr3L:22871069-22871189 36 1.23e-05 ACCCGCAGGC GCCAGGGT TGCCAACTGC chr2R:9553624-9553744 53 1.98e-05 TTTTGCGCCC GCGAGTGT TTTCAGTCAA chr3L:20518262-20518382 90 1.98e-05 TAGTTTTTCC GCGAGTGT AAACGTGGAT chr2R:24292816-24292936 44 2.45e-05 TGAACTCTTT GCGAGGGT GCAAAAAAAT chr3R:5065164-5065284 109 2.45e-05 AATCGCGTAA GCGAGGGT GTTT chr2L:309335-309455 107 2.45e-05 CACTCGTTGA GCGAGGGT ATTGGA chr2R:23668855-23668975 18 2.92e-05 AGTTGAATTT GCCAGTGC TTTTGGTTGC chrX:19494429-19494549 14 2.92e-05 GAAATGTGCG GCCAGTGC TGCAGAACGC chr3L:11303998-11304118 102 4.75e-05 CGACATTTTT CCCAGTGT ATGATCTGCC chrX:6663345-6663465 104 4.75e-05 TTTCCCCACC GCCACTGT GTTCAATGA chr3R:31636706-31636826 67 4.75e-05 TCCGATTTTG CCCAGTGT AATCGCTGAT chr3R:8524459-8524579 100 4.75e-05 GCGCACCTAC GCCACTGT ATACGTGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17072673-17072793 7.6e-06 55_[+1]_57 chrX:20511552-20511672 7.6e-06 77_[+1]_35 chr3R:15263456-15263576 7.6e-06 29_[+1]_83 chr2L:11829377-11829497 7.6e-06 88_[+1]_24 chrX:18370855-18370975 1.2e-05 19_[+1]_93 chr3L:9461735-9461855 1.2e-05 12_[+1]_100 chr3L:22871069-22871189 1.2e-05 35_[+1]_77 chr2R:9553624-9553744 2e-05 52_[+1]_60 chr3L:20518262-20518382 2e-05 89_[+1]_23 chr2R:24292816-24292936 2.4e-05 43_[+1]_69 chr3R:5065164-5065284 2.4e-05 108_[+1]_4 chr2L:309335-309455 2.4e-05 106_[+1]_6 chr2R:23668855-23668975 2.9e-05 17_[+1]_95 chrX:19494429-19494549 2.9e-05 13_[+1]_99 chr3L:11303998-11304118 4.7e-05 101_[+1]_11 chrX:6663345-6663465 4.7e-05 103_[+1]_9 chr3R:31636706-31636826 4.7e-05 66_[+1]_46 chr3R:8524459-8524579 4.7e-05 99_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAGKGT width=8 seqs=18 chr3R:17072673-17072793 ( 56) GCCAGTGT 1 chrX:20511552-20511672 ( 78) GCCAGTGT 1 chr3R:15263456-15263576 ( 30) GCCAGTGT 1 chr2L:11829377-11829497 ( 89) GCCAGTGT 1 chrX:18370855-18370975 ( 20) GCCAGGGT 1 chr3L:9461735-9461855 ( 13) GCCAGGGT 1 chr3L:22871069-22871189 ( 36) GCCAGGGT 1 chr2R:9553624-9553744 ( 53) GCGAGTGT 1 chr3L:20518262-20518382 ( 90) GCGAGTGT 1 chr2R:24292816-24292936 ( 44) GCGAGGGT 1 chr3R:5065164-5065284 ( 109) GCGAGGGT 1 chr2L:309335-309455 ( 107) GCGAGGGT 1 chr2R:23668855-23668975 ( 18) GCCAGTGC 1 chrX:19494429-19494549 ( 14) GCCAGTGC 1 chr3L:11303998-11304118 ( 102) CCCAGTGT 1 chrX:6663345-6663465 ( 104) GCCACTGT 1 chr3R:31636706-31636826 ( 67) CCCAGTGT 1 chr3R:8524459-8524579 ( 100) GCCACTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 6.0e+001 -1081 -80 222 -1081 -1081 237 -1081 -1081 -1081 190 54 -1081 171 -1081 -1081 -1081 -1081 -80 222 -1081 -1081 -1081 80 110 -1081 -1081 239 -1081 -1081 -80 -1081 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.0e+001 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.722222 0.277778 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGKGT MEME-1 regular expression -------------------------------------------------------------------------------- GC[CG]AG[TG]GT -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GKSGGTGG MEME-2 width = 8 sites = 11 llr = 115 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C ::4::::: probability G a56a7:aa matrix T :5:::a:: bits 2.4 * * ** 2.1 * * ** 1.9 * * ** 1.7 * * *** Relative 1.4 * ****** Entropy 1.2 ******** (15.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGTGG consensus TC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10473622-10473742 61 2.87e-06 AACTAATTCC GGGGGTGG CAGTCGCCTG chr2R:20319611-20319731 97 2.87e-06 ATTTGGGAGT GGGGGTGG CGGTGGGCGC chr2R:16856828-16856948 61 2.87e-06 CGGTTACTGC GGGGGTGG CGAAAGCCGT chrX:6091221-6091341 81 5.78e-06 CATCTTTCCG GGCGGTGG AAAAACTTGT chr2L:1158193-1158313 55 1.04e-05 TAACCCTTAT GTGGGTGG CAGAATACTA chrX:6339092-6339212 17 1.04e-05 TATGCGTAGA GTGGGTGG CCAGGAAGGG chr2R:19128016-19128136 104 1.52e-05 AAGCAGGGGG GTCGGTGG ACTGTAAGG chr2R:23869610-23869730 91 1.52e-05 GTTGTTGCTG GTCGGTGG GCTGTGGAGG chr2R:16202921-16203041 101 1.98e-05 AGCACGGCCA GGGGATGG TCGCGTTGCC chrX:23010735-23010855 9 2.44e-05 AAAAAGAT GGCGATGG ATTGCTTACG chr3L:4353890-4354010 110 3.18e-05 GTTTCTGCGA GTGGATGG ATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10473622-10473742 2.9e-06 60_[+2]_52 chr2R:20319611-20319731 2.9e-06 96_[+2]_16 chr2R:16856828-16856948 2.9e-06 60_[+2]_52 chrX:6091221-6091341 5.8e-06 80_[+2]_32 chr2L:1158193-1158313 1e-05 54_[+2]_58 chrX:6339092-6339212 1e-05 16_[+2]_96 chr2R:19128016-19128136 1.5e-05 103_[+2]_9 chr2R:23869610-23869730 1.5e-05 90_[+2]_22 chr2R:16202921-16203041 2e-05 100_[+2]_12 chrX:23010735-23010855 2.4e-05 8_[+2]_104 chr3L:4353890-4354010 3.2e-05 109_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKSGGTGG width=8 seqs=11 chrX:10473622-10473742 ( 61) GGGGGTGG 1 chr2R:20319611-20319731 ( 97) GGGGGTGG 1 chr2R:16856828-16856948 ( 61) GGGGGTGG 1 chrX:6091221-6091341 ( 81) GGCGGTGG 1 chr2L:1158193-1158313 ( 55) GTGGGTGG 1 chrX:6339092-6339212 ( 17) GTGGGTGG 1 chr2R:19128016-19128136 ( 104) GTCGGTGG 1 chr2R:23869610-23869730 ( 91) GTCGGTGG 1 chr2R:16202921-16203041 ( 101) GGGGATGG 1 chrX:23010735-23010855 ( 9) GGCGATGG 1 chr3L:4353890-4354010 ( 110) GTGGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 4.2e+003 -1010 -1010 239 -1010 -1010 -1010 151 55 -1010 91 173 -1010 -1010 -1010 239 -1010 -16 -1010 193 -1010 -1010 -1010 -1010 169 -1010 -1010 239 -1010 -1010 -1010 239 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.545455 0.454545 0.000000 0.363636 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKSGGTGG MEME-2 regular expression -------------------------------------------------------------------------------- G[GT][GC]G[GA]TGG -------------------------------------------------------------------------------- Time 13.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTYGCC MEME-3 width = 8 sites = 15 llr = 147 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a123:89 probability G a:9:1a21 matrix T :::85::: bits 2.4 ** * 2.1 ** * 1.9 *** * * 1.7 *** *** Relative 1.4 *** *** Entropy 1.2 **** *** (14.1 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTGCC consensus CC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21196716-21196836 60 7.81e-06 GTTTACTTAC GCGTTGCC AAACACCAGC chrX:1380486-1380606 31 7.81e-06 CACTGGCTCG GCGTTGCC ACCTCGCGGG chr2R:16202921-16203041 111 7.81e-06 GGGGATGGTC GCGTTGCC AA chrX:4116907-4117027 92 7.81e-06 GCGCAGCGTC GCGTCGCC TTTTCAAAGT chrX:10473622-10473742 6 7.81e-06 GCGCG GCGTTGCC ACCTGGTCCG chr3R:17072673-17072793 21 1.56e-05 TCACCACGAA GCGTGGCC ACTTGTTGTG chrX:1477006-1477126 68 1.56e-05 GTGCTGTAAA GCGCCGCC ATTTAATTGC chr2L:11829377-11829497 62 1.56e-05 CCATTGCGCA GCGTGGCC ACCTGGTCAC chr3R:7108270-7108390 67 2.34e-05 GGAGGCTGCA GCGTCGGC GGAGCTGCAT chr2L:13206354-13206474 92 2.34e-05 CAGCAAACGG GCGTCGGC GTTGCTGTCG chr3R:32051841-32051961 82 3.29e-05 ATATATGTGT GCGTTGCG GGACTTGTGC chrX:5671790-5671910 43 4.08e-05 TGTAACAGCA GCCTTGCC AGACCGCCAC chr2L:1207645-1207765 109 4.08e-05 TGCCTTTGGG GCCTTGCC CCGC chrX:1478435-1478555 112 4.86e-05 CAACACCAGC GCGCCGGC A chr3R:8524459-8524579 47 5.63e-05 AGCTGTGCCT GCGCTGCG GCAGGAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21196716-21196836 7.8e-06 59_[+3]_53 chrX:1380486-1380606 7.8e-06 30_[+3]_82 chr2R:16202921-16203041 7.8e-06 110_[+3]_2 chrX:4116907-4117027 7.8e-06 91_[+3]_21 chrX:10473622-10473742 7.8e-06 5_[+3]_107 chr3R:17072673-17072793 1.6e-05 20_[+3]_92 chrX:1477006-1477126 1.6e-05 67_[+3]_45 chr2L:11829377-11829497 1.6e-05 61_[+3]_51 chr3R:7108270-7108390 2.3e-05 66_[+3]_46 chr2L:13206354-13206474 2.3e-05 91_[+3]_21 chr3R:32051841-32051961 3.3e-05 81_[+3]_31 chrX:5671790-5671910 4.1e-05 42_[+3]_70 chr2L:1207645-1207765 4.1e-05 108_[+3]_4 chrX:1478435-1478555 4.9e-05 111_[+3]_1 chr3R:8524459-8524579 5.6e-05 46_[+3]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTYGCC width=8 seqs=15 chr3L:21196716-21196836 ( 60) GCGTTGCC 1 chrX:1380486-1380606 ( 31) GCGTTGCC 1 chr2R:16202921-16203041 ( 111) GCGTTGCC 1 chrX:4116907-4117027 ( 92) GCGTCGCC 1 chrX:10473622-10473742 ( 6) GCGTTGCC 1 chr3R:17072673-17072793 ( 21) GCGTGGCC 1 chrX:1477006-1477126 ( 68) GCGCCGCC 1 chr2L:11829377-11829497 ( 62) GCGTGGCC 1 chr3R:7108270-7108390 ( 67) GCGTCGGC 1 chr2L:13206354-13206474 ( 92) GCGTCGGC 1 chr3R:32051841-32051961 ( 82) GCGTTGCG 1 chrX:5671790-5671910 ( 43) GCCTTGCC 1 chr2L:1207645-1207765 ( 109) GCCTTGCC 1 chrX:1478435-1478555 ( 112) GCGCCGGC 1 chr3R:8524459-8524579 ( 47) GCGCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 5.4e+003 -1055 -1055 239 -1055 -1055 237 -1055 -1055 -1055 -53 218 -1055 -1055 5 -1055 137 -1055 79 -52 78 -1055 -1055 239 -1055 -1055 205 7 -1055 -1055 217 -52 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.333333 0.133333 0.533333 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.866667 0.133333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCC MEME-3 regular expression -------------------------------------------------------------------------------- GCG[TC][TC]G[CG]C -------------------------------------------------------------------------------- Time 19.87 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAGCTG MEME-4 width = 8 sites = 6 llr = 68 E-value = 6.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:a:::: pos.-specific C ::a::a:: probability G ::::a::a matrix T ::::::a: bits 2.4 * ** * 2.1 * ** * 1.9 * ** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8488860-8488980 113 1.20e-05 CATGCAAACA AACAGCTG chr3L:9461735-9461855 34 1.20e-05 CAACCTCCTA AACAGCTG TGGCCTTGAA chrX:17176653-17176773 4 1.20e-05 GAA AACAGCTG AGAAGTTTTC chr2L:21370976-21371096 82 1.20e-05 gatttgtata aacagctg agtcgatata chr3R:5856337-5856457 3 1.20e-05 CA AACAGCTG TTCTCCGAAG chr3R:26892923-26893043 89 1.20e-05 ACAAGCTCAT AACAGCTG CAGCTAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8488860-8488980 1.2e-05 112_[+4] chr3L:9461735-9461855 1.2e-05 33_[+4]_79 chrX:17176653-17176773 1.2e-05 3_[+4]_109 chr2L:21370976-21371096 1.2e-05 81_[+4]_31 chr3R:5856337-5856457 1.2e-05 2_[+4]_110 chr3R:26892923-26893043 1.2e-05 88_[+4]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAGCTG width=8 seqs=6 chr2L:8488860-8488980 ( 113) AACAGCTG 1 chr3L:9461735-9461855 ( 34) AACAGCTG 1 chrX:17176653-17176773 ( 4) AACAGCTG 1 chr2L:21370976-21371096 ( 82) AACAGCTG 1 chr3R:5856337-5856457 ( 3) AACAGCTG 1 chr3R:26892923-26893043 ( 89) AACAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 6.0e+004 171 -923 -923 -923 171 -923 -923 -923 -923 237 -923 -923 171 -923 -923 -923 -923 -923 239 -923 -923 237 -923 -923 -923 -923 -923 169 -923 -923 239 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 6.0e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-4 regular expression -------------------------------------------------------------------------------- AACAGCTG -------------------------------------------------------------------------------- Time 26.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCWGCCA MEME-5 width = 8 sites = 5 llr = 58 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::6:::a pos.-specific C ::a::aa: probability G aa::a::: matrix T :::4:::: bits 2.4 *** *** 2.1 *** *** 1.9 *** *** 1.7 *** **** Relative 1.4 *** **** Entropy 1.2 *** **** (16.7 bits) 1.0 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21196716-21196836 79 4.66e-06 AACACCAGCT GGCAGCCA TTCGGAGGAA chrX:3068442-3068562 32 4.66e-06 CAAAGAAAGG GGCAGCCA TGTTAAGCAT chr2R:16856828-16856948 1 4.66e-06 . GGCAGCCA AAGAAAATGC chr3L:3896785-3896905 67 9.40e-06 ACTGAAACCG GGCTGCCA GGCTACCGAT chr3R:5613245-5613365 60 9.40e-06 ACAGTTATTG GGCTGCCA TCTGGGGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21196716-21196836 4.7e-06 78_[+5]_34 chrX:3068442-3068562 4.7e-06 31_[+5]_81 chr2R:16856828-16856948 4.7e-06 [+5]_112 chr3L:3896785-3896905 9.4e-06 66_[+5]_46 chr3R:5613245-5613365 9.4e-06 59_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCWGCCA width=8 seqs=5 chr3L:21196716-21196836 ( 79) GGCAGCCA 1 chrX:3068442-3068562 ( 32) GGCAGCCA 1 chr2R:16856828-16856948 ( 1) GGCAGCCA 1 chr3L:3896785-3896905 ( 67) GGCTGCCA 1 chr3R:5613245-5613365 ( 60) GGCTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.3e+005 -897 -897 238 -897 -897 -897 238 -897 -897 237 -897 -897 97 -897 -897 37 -897 -897 238 -897 -897 237 -897 -897 -897 237 -897 -897 171 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.3e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCCA MEME-5 regular expression -------------------------------------------------------------------------------- GGC[AT]GCCA -------------------------------------------------------------------------------- Time 32.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1043694-1043814 2.08e-01 120 chr2R:16856828-16856948 1.50e-06 [+5(4.66e-06)]_52_[+2(2.87e-06)]_52 chr2L:889917-890037 4.13e-02 120 chrX:3950374-3950494 9.96e-01 120 chr3R:23228731-23228851 3.43e-01 120 chr2L:3058838-3058958 5.72e-01 120 chr3L:627840-627960 6.26e-01 120 chr2L:7298901-7299021 2.17e-01 120 chr2R:20641545-20641665 3.69e-01 120 chr2R:24132833-24132953 6.01e-01 120 chr3R:10024173-10024293 9.64e-01 120 chr2R:7636646-7636766 1.14e-01 120 chrX:19494429-19494549 1.53e-03 13_[+1(2.92e-05)]_99 chr2R:17160995-17161115 5.88e-01 120 chr2R:6589447-6589567 9.69e-01 120 chr2L:20078993-20079113 4.67e-01 120 chrX:13333036-13333156 9.79e-01 120 chrX:19665980-19666100 1.01e-01 120 chr3R:14656083-14656203 7.04e-01 120 chrX:948271-948391 6.67e-01 120 chr2R:23668855-23668975 2.84e-03 17_[+1(2.92e-05)]_95 chrX:618668-618788 2.93e-01 120 chr2R:20529492-20529612 7.80e-01 120 chr2R:6938638-6938758 7.20e-01 120 chrX:18494302-18494422 4.70e-01 120 chr3R:9675091-9675211 9.18e-01 120 chr2L:9448850-9448970 3.55e-01 120 chr3R:8524459-8524579 4.35e-04 46_[+3(5.63e-05)]_45_[+1(4.75e-05)]_\ 13 chr3L:20518262-20518382 6.74e-02 89_[+1(1.98e-05)]_23 chr3R:31636706-31636826 5.21e-03 66_[+1(4.75e-05)]_46 chrX:23010735-23010855 7.85e-03 8_[+2(2.44e-05)]_104 chrX:18366692-18366812 3.65e-01 120 chrX:6663345-6663465 1.71e-01 103_[+1(4.75e-05)]_9 chr4:1030991-1031111 8.00e-01 120 chr2R:20270962-20271082 9.76e-01 120 chr3R:30489961-30490081 3.54e-01 120 chr3L:15563569-15563689 1.80e-01 120 chr2L:19200356-19200476 1.00e+00 120 chr3L:3411901-3412021 9.90e-01 120 chrX:13253231-13253351 8.72e-01 120 chr3R:26555922-26556042 9.35e-01 120 chr3R:21161881-21162001 5.11e-01 120 chrX:2714851-2714971 3.34e-01 120 chr3L:94165-94285 9.88e-01 120 chr3R:15292458-15292578 9.58e-01 120 chr3R:28429690-28429810 9.64e-01 120 chr2L:309335-309455 1.00e-01 106_[+1(2.45e-05)]_6 chr3L:22871069-22871189 1.49e-05 35_[+1(1.23e-05)]_18_[+3(6.42e-05)]_\ 51 chr3R:21993068-21993188 8.13e-01 120 chr2R:23869610-23869730 7.85e-03 90_[+2(1.52e-05)]_22 chr3R:5065164-5065284 5.41e-02 108_[+1(2.45e-05)]_4 chr3L:3770973-3771093 5.52e-01 120 chr3R:6397757-6397877 4.62e-01 120 chr2R:20590633-20590753 2.21e-01 120 chr2L:6339642-6339762 3.41e-01 120 chrX:8863489-8863609 1.80e-01 120 chrX:17465674-17465794 2.52e-01 120 chr3R:24626287-24626407 4.49e-01 120 chr3R:16704390-16704510 9.83e-01 120 chr2R:6656310-6656430 1.71e-02 46_[+5(1.53e-05)]_66 chr3L:16147910-16148030 4.95e-01 120 chr2L:1837829-1837949 4.58e-01 120 chr2L:1145108-1145228 4.14e-01 120 chr3R:27988934-27989054 9.59e-01 120 chr2L:5209949-5210069 9.29e-01 120 chr3R:4732487-4732607 8.33e-01 120 chrX:11350572-11350692 8.73e-01 120 chr2L:1427880-1428000 6.44e-01 120 chr2L:14359124-14359244 1.00e+00 120 chr2L:18678226-18678346 6.48e-01 120 chr3R:23941748-23941868 7.32e-01 120 chrX:13789142-13789262 1.00e+00 120 chr3R:23191540-23191660 1.00e+00 120 chr2R:13999266-13999386 9.91e-01 120 chr3L:11408866-11408986 3.23e-01 120 chr2L:9779234-9779354 3.78e-01 120 chr2R:9544921-9545041 7.34e-02 120 chr2L:3477367-3477487 9.62e-01 120 chr2R:20319611-20319731 1.56e-02 96_[+2(2.87e-06)]_16 chrX:10473622-10473742 1.14e-05 5_[+3(7.81e-06)]_47_[+2(2.87e-06)]_\ 52 chr2R:9553624-9553744 1.22e-02 52_[+1(1.98e-05)]_60 chr3R:16355532-16355652 7.73e-02 120 chr2L:15432376-15432496 9.94e-01 120 chr2R:12537592-12537712 7.61e-01 120 chrX:6091221-6091341 5.05e-02 80_[+2(5.78e-06)]_32 chrX:13630452-13630572 9.21e-01 120 chr3L:1609762-1609882 1.15e-01 120 chr3L:4353890-4354010 4.53e-02 109_[+2(3.18e-05)]_3 chr2R:6781853-6781973 9.20e-01 120 chr2L:1207645-1207765 1.99e-02 108_[+3(4.08e-05)]_4 chr2R:13008310-13008430 1.00e+00 120 chr3L:16149833-16149953 2.94e-01 120 chr3R:32051841-32051961 6.17e-02 81_[+3(3.29e-05)]_31 chr2L:6956864-6956984 3.67e-01 120 chr2R:18421224-18421344 9.48e-01 120 chrX:5639259-5639379 3.51e-02 120 chrX:1478435-1478555 2.63e-02 111_[+3(4.86e-05)]_1 chr2L:7494386-7494506 9.87e-01 120 chr2L:11829377-11829497 9.61e-05 61_[+3(1.56e-05)]_19_[+1(7.61e-06)]_\ 24 chr3R:26892923-26893043 6.93e-02 88_[+4(1.20e-05)]_24 chrX:19164880-19165000 4.39e-01 120 chr2R:7653901-7654021 8.13e-01 120 chr3L:10866746-10866866 5.66e-01 120 chr3L:5819407-5819527 9.43e-01 120 chr3R:31805399-31805519 1.81e-02 120 chr2L:11203767-11203887 6.06e-02 120 chr3R:18168565-18168685 4.12e-02 120 chrX:3173278-3173398 9.78e-01 120 chrX:6339092-6339212 2.30e-03 16_[+2(1.04e-05)]_96 chr2R:24292816-24292936 3.10e-02 43_[+1(2.45e-05)]_69 chrX:13676571-13676691 9.65e-01 120 chr3R:9055283-9055403 4.00e-02 120 chr3R:10699284-10699404 2.70e-01 120 chr2L:13206354-13206474 9.14e-03 91_[+3(2.34e-05)]_21 chr2L:18377229-18377349 2.51e-01 120 chrX:8606317-8606437 3.52e-02 120 chr3R:7108270-7108390 3.11e-03 66_[+3(2.34e-05)]_46 chr2L:14024806-14024926 3.48e-01 120 chr2L:18688816-18688936 3.40e-01 120 chr3R:30325523-30325643 2.05e-01 120 chrX:16102484-16102604 4.60e-01 120 chr3R:27289755-27289875 6.16e-01 120 chr3L:12409092-12409212 1.00e+00 120 chrX:4116907-4117027 1.73e-03 91_[+3(7.81e-06)]_21 chr3L:1031039-1031159 6.90e-01 120 chrX:1477006-1477126 5.38e-03 67_[+3(1.56e-05)]_45 chr2L:21619186-21619306 3.00e-01 120 chr2R:11178541-11178661 9.06e-01 120 chr2R:16202921-16203041 1.11e-05 100_[+2(1.98e-05)]_2_[+3(7.81e-06)]_\ 2 chr2R:14411697-14411817 7.05e-01 120 chrX:3538938-3539058 7.93e-01 120 chrX:10387770-10387890 7.66e-01 120 chr2R:11094458-11094578 9.39e-01 120 chr3L:15235329-15235449 1.09e-01 120 chr3R:16655770-16655890 5.19e-01 120 chr2R:21910002-21910122 9.22e-01 120 chr3L:3450480-3450600 7.79e-01 120 chrX:15739060-15739180 7.96e-01 120 chr3L:12803702-12803822 9.96e-01 120 chr2L:12351023-12351143 4.16e-01 120 chr3L:13929292-13929412 5.02e-01 120 chr2R:7987890-7988010 2.03e-01 120 chr2R:9103173-9103293 4.34e-03 78_[+3(7.37e-05)]_34 chr2L:9938073-9938193 2.79e-01 120 chr2R:22640190-22640310 9.57e-01 120 chr2L:7412284-7412404 7.48e-01 120 chr2L:3356494-3356614 1.62e-01 120 chrX:15120196-15120316 3.70e-01 120 chr2L:838160-838280 8.42e-01 120 chr2R:21527407-21527527 5.65e-01 120 chr3L:15098047-15098167 1.96e-01 120 chrX:15910129-15910249 9.12e-01 120 chrX:5892199-5892319 5.67e-01 120 chr3R:30134818-30134938 9.87e-01 120 chr2L:15254385-15254505 9.31e-01 120 chrX:20423836-20423956 4.23e-01 120 chr3R:18215445-18215565 1.75e-01 120 chr3R:9220131-9220251 8.47e-01 120 chrX:14602718-14602838 2.25e-01 120 chr2R:18277117-18277237 6.94e-02 120 chrX:617513-617633 8.03e-02 120 chr3L:13486727-13486847 6.39e-01 120 chr2L:18328883-18329003 8.40e-01 120 chrX:8233354-8233474 4.99e-01 120 chr2L:484334-484454 8.25e-01 120 chrX:10488048-10488168 7.09e-01 120 chrX:17330442-17330562 1.00e+00 120 chrX:1380486-1380606 6.43e-03 30_[+3(7.81e-06)]_82 chrX:5671790-5671910 5.06e-04 42_[+3(4.08e-05)]_70 chr3L:7861172-7861292 9.55e-01 120 chr2L:7532707-7532827 4.10e-01 120 chr3L:22277364-22277484 4.20e-01 120 chr2L:8894372-8894492 9.63e-02 120 chrX:4262796-4262916 1.14e-01 120 chr3L:21057127-21057247 6.98e-02 120 chrX:13391288-13391408 9.61e-01 120 chr3R:5613245-5613365 7.73e-03 59_[+5(9.40e-06)]_53 chr3L:8526115-8526235 3.65e-01 120 chr3L:20389143-20389263 8.57e-01 120 chr3R:27130153-27130273 9.46e-01 120 chr2L:1158193-1158313 1.99e-02 54_[+2(1.04e-05)]_58 chr3L:11258555-11258675 9.71e-01 120 chr2R:23818402-23818522 6.52e-01 120 chr2R:12037229-12037349 1.83e-01 120 chrX:8141565-8141685 1.42e-01 42_[+1(7.98e-05)]_70 chr2L:5980939-5981059 2.44e-01 120 chrX:20394214-20394334 6.09e-01 120 chr3R:15263456-15263576 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19_[+1(1.23e-05)]_93 chr2R:10066627-10066747 9.61e-01 120 chrX:22837498-22837618 4.39e-02 120 chr2L:8488860-8488980 3.61e-02 112_[+4(1.20e-05)] chr2L:14094785-14094905 1.54e-01 120 chr3L:3896785-3896905 8.63e-04 66_[+5(9.40e-06)]_46 chr3R:17072673-17072793 2.96e-04 20_[+3(1.56e-05)]_27_[+1(7.61e-06)]_\ 57 chr3R:15472760-15472880 8.96e-01 120 chr3R:13683804-13683924 9.13e-02 120 chrX:6375810-6375930 8.32e-01 120 chr2R:12605706-12605826 8.02e-01 120 chr3R:9370608-9370728 8.74e-01 120 chr2L:4971476-4971596 1.37e-01 120 chr3R:23335073-23335193 7.02e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************