******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7745.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16279363-16279483 1.0000 120 chr2R:22543629-22543749 1.0000 120 chr2L:14258730-14258850 1.0000 120 chr2L:14247209-14247329 1.0000 120 chr3L:3327078-3327198 1.0000 120 chr2R:12553335-12553455 1.0000 120 chr3R:25457467-25457587 1.0000 120 chr3R:28860841-28860961 1.0000 120 chr2R:16090091-16090211 1.0000 120 chr3L:22237825-22237945 1.0000 120 chr3R:16030581-16030701 1.0000 120 chr2R:12012322-12012442 1.0000 120 chr3R:12274941-12275061 1.0000 120 chr2L:18647996-18648116 1.0000 120 chr2L:17228257-17228377 1.0000 120 chr3R:24891410-24891530 1.0000 120 chr2L:17768730-17768850 1.0000 120 chr3L:2852471-2852591 1.0000 120 chr2L:4055020-4055140 1.0000 120 chr2L:19847794-19847914 1.0000 120 chr3R:16519372-16519492 1.0000 120 chr3R:20254857-20254977 1.0000 120 chr3L:6516240-6516360 1.0000 120 chr3R:28580134-28580254 1.0000 120 chr3L:15702343-15702463 1.0000 120 chr2L:8888349-8888469 1.0000 120 chr3R:23042860-23042980 1.0000 120 chrX:17358115-17358235 1.0000 120 chrX:17511233-17511353 1.0000 120 chr3L:20924450-20924570 1.0000 120 chr2L:164265-164385 1.0000 120 chr3L:20952985-20953105 1.0000 120 chr2R:14951094-14951214 1.0000 120 chr3R:4916938-4917058 1.0000 120 chr2R:13569359-13569479 1.0000 120 chr3R:6226197-6226317 1.0000 120 chrX:8525031-8525151 1.0000 120 chr3L:12036779-12036899 1.0000 120 chr3L:5855601-5855721 1.0000 120 chr3R:19015318-19015438 1.0000 120 chr3L:18402037-18402157 1.0000 120 chr3R:13792554-13792674 1.0000 120 chrX:708461-708581 1.0000 120 chr2R:15249070-15249190 1.0000 120 chr3R:9359557-9359677 1.0000 120 chr3L:9469948-9470068 1.0000 120 chr2R:14003141-14003261 1.0000 120 chr3L:19154029-19154149 1.0000 120 chr3L:6697193-6697313 1.0000 120 chr3R:9208805-9208925 1.0000 120 chr2R:6517202-6517322 1.0000 120 chr2L:9445925-9446045 1.0000 120 chr3L:14645332-14645452 1.0000 120 chr3L:3386834-3386954 1.0000 120 chr3L:5619431-5619551 1.0000 120 chr3L:16732575-16732695 1.0000 120 chrX:5212306-5212426 1.0000 120 chr2R:8636105-8636225 1.0000 120 chr3L:15639234-15639354 1.0000 120 chr3L:13585360-13585480 1.0000 120 chr2L:6236659-6236779 1.0000 120 chr2R:7026673-7026793 1.0000 120 chr2R:19796101-19796221 1.0000 120 chr2L:14668369-14668489 1.0000 120 chr3L:13643346-13643466 1.0000 120 chrX:17506417-17506537 1.0000 120 chr3R:8981334-8981454 1.0000 120 chr3L:11378576-11378696 1.0000 120 chr3R:10590298-10590418 1.0000 120 chr2L:4051836-4051956 1.0000 120 chr2L:8289441-8289561 1.0000 120 chr3R:22196776-22196896 1.0000 120 chr3L:4166014-4166134 1.0000 120 chr2L:7278282-7278402 1.0000 120 chr3L:19202515-19202635 1.0000 120 chr3R:10299901-10300021 1.0000 120 chr2R:10312269-10312389 1.0000 120 chr3R:9246500-9246620 1.0000 120 chr2R:21560032-21560152 1.0000 120 chr3L:6854100-6854220 1.0000 120 chr3R:30566639-30566759 1.0000 120 chr2L:3006326-3006446 1.0000 120 chrX:17175243-17175363 1.0000 120 chr2L:14450000-14450120 1.0000 120 chr3L:19228493-19228613 1.0000 120 chr2L:1425962-1426082 1.0000 120 chr3R:4898052-4898172 1.0000 120 chr3L:11224800-11224920 1.0000 120 chr2L:17586975-17587095 1.0000 120 chr2R:11721568-11721688 1.0000 120 chr2R:20028286-20028406 1.0000 120 chr3L:15203723-15203843 1.0000 120 chr2L:3830588-3830708 1.0000 120 chr2L:2453956-2454076 1.0000 120 chr3L:7934914-7935034 1.0000 120 chr2R:14722831-14722951 1.0000 120 chr2R:20155526-20155646 1.0000 120 chr2L:11187279-11187399 1.0000 120 chr3R:26804281-26804401 1.0000 120 chr3R:15582665-15582785 1.0000 120 chr2L:497861-497981 1.0000 120 chr2R:19938084-19938204 1.0000 120 chr3R:8916068-8916188 1.0000 120 chr2R:15750276-15750396 1.0000 120 chr3L:19037182-19037302 1.0000 120 chr3L:10972536-10972656 1.0000 120 chr3L:15319943-15320063 1.0000 120 chr3R:8921495-8921615 1.0000 120 chr2R:15353074-15353194 1.0000 120 chr3R:21413963-21414083 1.0000 120 chr2L:8098587-8098707 1.0000 120 chr3R:21344565-21344685 1.0000 120 chr2L:14213121-14213241 1.0000 120 chr3L:12643914-12644034 1.0000 120 chr2L:18552357-18552477 1.0000 120 chr3R:18050144-18050264 1.0000 120 chr3R:13929697-13929817 1.0000 120 chr3L:8065741-8065861 1.0000 120 chr2L:19160890-19161010 1.0000 120 chr3R:28596137-28596257 1.0000 120 chr2L:6534576-6534696 1.0000 120 chrX:20640441-20640561 1.0000 120 chr2L:3417853-3417973 1.0000 120 chr2L:9456244-9456364 1.0000 120 chr2L:12615350-12615470 1.0000 120 chr3L:15531641-15531761 1.0000 120 chr3L:8073558-8073678 1.0000 120 chr3L:7953547-7953667 1.0000 120 chrX:16596384-16596504 1.0000 120 chr3R:26802865-26802985 1.0000 120 chr3L:18422035-18422155 1.0000 120 chr2R:11930269-11930389 1.0000 120 chr2L:3418052-3418172 1.0000 120 chr2R:21480446-21480566 1.0000 120 chr2R:15306156-15306276 1.0000 120 chr3R:20912777-20912897 1.0000 120 chr3R:17400265-17400385 1.0000 120 chr2R:21194231-21194351 1.0000 120 chr2L:2474024-2474144 1.0000 120 chrX:17162718-17162838 1.0000 120 chr2L:14428862-14428982 1.0000 120 chr2L:3648594-3648714 1.0000 120 chr3R:14005904-14006024 1.0000 120 chr3R:12398147-12398267 1.0000 120 chr2R:18335903-18336023 1.0000 120 chr3R:5203937-5204057 1.0000 120 chr2L:4091922-4092042 1.0000 120 chr3L:12646231-12646351 1.0000 120 chr3R:26023852-26023972 1.0000 120 chr2R:11379712-11379832 1.0000 120 chr3R:9922781-9922901 1.0000 120 chr3R:5623701-5623821 1.0000 120 chrX:3150699-3150819 1.0000 120 chr2R:8177309-8177429 1.0000 120 chr3L:12714805-12714925 1.0000 120 chr3R:20560760-20560880 1.0000 120 chr3L:18217034-18217154 1.0000 120 chrX:5618736-5618856 1.0000 120 chr3L:22129947-22130067 1.0000 120 chr3R:31354114-31354234 1.0000 120 chr2R:7422464-7422584 1.0000 120 chr3L:4999462-4999582 1.0000 120 chr3L:12088213-12088333 1.0000 120 chr2R:21530705-21530825 1.0000 120 chr3R:14566988-14567108 1.0000 120 chr2L:14444919-14445039 1.0000 120 chr2L:5006243-5006363 1.0000 120 chr3L:5829251-5829371 1.0000 120 chr3R:11645001-11645121 1.0000 120 chr2R:15915283-15915403 1.0000 120 chr3L:4263377-4263497 1.0000 120 chr3L:11308816-11308936 1.0000 120 chr2L:18303041-18303161 1.0000 120 chr3L:14575700-14575820 1.0000 120 chr3L:1117395-1117515 1.0000 120 chr2R:11688632-11688752 1.0000 120 chr3R:9918212-9918332 1.0000 120 chr2L:441475-441595 1.0000 120 chr2L:12589280-12589400 1.0000 120 chr2R:24927076-24927196 1.0000 120 chr2R:19676169-19676289 1.0000 120 chr2R:17826004-17826124 1.0000 120 chrX:17703404-17703524 1.0000 120 chr3R:22634975-22635095 1.0000 120 chr3L:15021156-15021276 1.0000 120 chr2R:10314711-10314831 1.0000 120 chr3L:19174749-19174869 1.0000 120 chr3L:6787535-6787655 1.0000 120 chr2L:6658190-6658310 1.0000 120 chr2R:25128173-25128293 1.0000 120 chr2L:19313597-19313717 1.0000 120 chr3L:12678509-12678629 1.0000 120 chr2R:11091785-11091905 1.0000 120 chr3R:26801865-26801985 1.0000 120 chr3L:8452139-8452259 1.0000 120 chr2L:8346426-8346546 1.0000 120 chr3L:14655920-14656040 1.0000 120 chr3R:10528271-10528391 1.0000 120 chr3R:29544550-29544670 1.0000 120 chr2R:7158877-7158997 1.0000 120 chrX:3043158-3043278 1.0000 120 chr3R:9512464-9512584 1.0000 120 chr2R:10556398-10556518 1.0000 120 chr2R:8635525-8635645 1.0000 120 chr3L:13105962-13106082 1.0000 120 chr3L:2237630-2237750 1.0000 120 chr3L:16569589-16569709 1.0000 120 chr3L:15200722-15200842 1.0000 120 chr2R:20999242-20999362 1.0000 120 chr3L:19164480-19164600 1.0000 120 chr2L:5418158-5418278 1.0000 120 chr3L:21643326-21643446 1.0000 120 chr3R:24234860-24234980 1.0000 120 chr2R:11045895-11046015 1.0000 120 chr2R:22237199-22237319 1.0000 120 chr2R:22700226-22700346 1.0000 120 chr2L:2860124-2860244 1.0000 120 chr3L:4542678-4542798 1.0000 120 chr2L:20934860-20934980 1.0000 120 chr2R:19411576-19411696 1.0000 120 chr2L:17381611-17381731 1.0000 120 chr2L:10543152-10543272 1.0000 120 chr3R:9028796-9028916 1.0000 120 chr3L:161973-162093 1.0000 120 chr2R:15682631-15682751 1.0000 120 chr3R:15653055-15653175 1.0000 120 chr2L:14284668-14284788 1.0000 120 chr3L:4440327-4440447 1.0000 120 chr2R:14001919-14002039 1.0000 120 chr3L:18015090-18015210 1.0000 120 chr2L:18948857-18948977 1.0000 120 chr2L:14618995-14619115 1.0000 120 chr3R:8665207-8665327 1.0000 120 chr2R:9551738-9551858 1.0000 120 chr2R:6645716-6645836 1.0000 120 chr2R:12914858-12914978 1.0000 120 chr2L:8296439-8296559 1.0000 120 chr3R:15673513-15673633 1.0000 120 chrX:17509970-17510090 1.0000 120 chr2R:12468030-12468150 1.0000 120 chr3L:22399895-22400015 1.0000 120 chrX:8106553-8106673 1.0000 120 chr3R:13957095-13957215 1.0000 120 chr3L:6309851-6309971 1.0000 120 chr2R:25232874-25232994 1.0000 120 chr2L:14580843-14580963 1.0000 120 chr3L:12298196-12298316 1.0000 120 chr2L:3730032-3730152 1.0000 120 chr2R:10542597-10542717 1.0000 120 chrX:18910495-18910615 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7745/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7745.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.202 G 0.195 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.202 G 0.195 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTAATTAA MEME-1 width = 8 sites = 217 llr = 1377 E-value = 4.8e-084 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 32aa::75 pos.-specific C 1::::::1 probability G 1::::::1 matrix T 68::aa32 bits 2.4 2.1 1.9 1.7 **** Relative 1.4 **** Entropy 1.2 **** (9.2 bits) 0.9 ***** 0.7 ****** 0.5 ****** 0.2 ******** 0.0 -------- Multilevel TTAATTAA consensus AA TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12298196-12298316 92 6.83e-05 TTGTTCGGGG TTAATTAA ACACGACATG chr3R:13957095-13957215 46 6.83e-05 GCTGTGGCGA TTAATTAA AGACTCATTA chr2R:11045895-11046015 91 6.83e-05 ATGTTTTGGC TTAATTAA GAAAAATAAT chr3R:9512464-9512584 8 6.83e-05 TAAATTA TTAATTAA GATTGATTAA chr2R:19676169-19676289 101 6.83e-05 CCGCCCACAA TTAATTAA TTAGTTCAGT chr2R:24927076-24927196 34 6.83e-05 TTCAAATAAT TTAATTAA ACACACTCGG chr2R:11688632-11688752 97 6.83e-05 TATAACTAAT TTAATTAA TAAAGCTCTC chr3L:4263377-4263497 17 6.83e-05 tattctttag ttaattaa tGGCTACCAC chr2R:15915283-15915403 67 6.83e-05 TTGAAAATAT TTAATTAA AACGATGCGA chr3R:11645001-11645121 17 6.83e-05 GGCCAGTGGC TTAATTAA TAAATTAATT chr3R:5623701-5623821 4 6.83e-05 TAA TTAATTAA TGGCAGAACA chr3R:12398147-12398267 56 6.83e-05 CAATATGAAA TTAATTAA TAATTTAGAT chrX:17162718-17162838 33 6.83e-05 GGGAGACCCC TTAATTAA TCAGAAATAA chr2L:2474024-2474144 88 6.83e-05 TCATAAAATA TTAATTAA TTAGTTGAGG chr3R:17400265-17400385 70 6.83e-05 TCCGCGCTCA TTAATTAA ATTAAATGTC chr3R:20912777-20912897 26 6.83e-05 GCATTAACCC TTAATTAA TCTGCGATTC chr2R:21480446-21480566 38 6.83e-05 AGACAGGGTA TTAATTAA GCATTACACA chr3L:8073558-8073678 24 6.83e-05 CGACAACCTT TTAATTAA GAAAAGAACA chrX:20640441-20640561 95 6.83e-05 GGCGCGCTTG TTAATTAA GCCCAACAAT chr3R:13929697-13929817 48 6.83e-05 AGCGGCTTAA TTAATTAA AGTCAATCTC chr2L:18552357-18552477 40 6.83e-05 CGAACAATCA TTAATTAA ATTACCTGAC chr2L:8098587-8098707 66 6.83e-05 TAGCTTGGTG TTAATTAA TTTTCATTAT chr3R:21413963-21414083 95 6.83e-05 TTAACAGCAA TTAATTAA ACGCTCGCTG chr2R:15353074-15353194 25 6.83e-05 ACAATTACGC TTAATTAA TTTAAAGATG chr2R:20155526-20155646 11 6.83e-05 CCATTAGCAA TTAATTAA AAAATTAGAA chr3R:22196776-22196896 52 6.83e-05 AATTTTATGT TTAATTAA AAAGAATTCT chr3L:13585360-13585480 9 6.83e-05 CCAAGGAA TTAATTAA GGCCTAGCTT chrX:5212306-5212426 15 6.83e-05 TTGACATAAA TTAATTAA ATAAATTAGA chr3L:16732575-16732695 81 6.83e-05 TTACTTGCCC TTAATTAA ACATTGTTTT chr3L:19154029-19154149 61 6.83e-05 cacacGGGTA TTAATTAA TGTCAGTGTG chr2R:14003141-14003261 64 6.83e-05 AAATAGAAAA TTAATTAA AGTTGGCAGG chrX:708461-708581 32 6.83e-05 ATTTTGAGCG TTAATTAA AATTAAATAG chrX:8525031-8525151 8 6.83e-05 CACCAaa ttaattaa ttagcataaa chr2R:13569359-13569479 22 6.83e-05 CTGGTATTAT TTAATTAA TTTTTTCCGA chr2L:8888349-8888469 50 6.83e-05 TCTTAATTTA TTAATTAA TTAGAATTGC chr3R:28580134-28580254 66 6.83e-05 ACCTTCTCGC TTAATTAA AAGCGACAAC chr3R:16519372-16519492 77 6.83e-05 TGGTGATAAC TTAATTAA GGGGGCGATA chr2L:19847794-19847914 72 6.83e-05 GTCTTCTGTG TTAATTAA CATGAGTAGT chr2L:17768730-17768850 83 6.83e-05 taattgttaa ttaattaa CATAGATACA chr2R:12012322-12012442 47 6.83e-05 aattaattag ttaattaa ttaGCTAAAA chr3R:16030581-16030701 29 6.83e-05 CCATAATTAA TTAATTAA TGGCTAGAGA chr3L:22237825-22237945 105 6.83e-05 AGAACAAAAA TTAATTAA TTAGCCTA chr3R:25457467-25457587 109 6.83e-05 CAAGGTTCCT TTAATTAA AATT chr3R:16279363-16279483 104 6.83e-05 AAATTACATT TTAATTAA TTAATTGCC chr2L:14580843-14580963 42 2.03e-04 ATCATTTATA TTAATTTA TTATTGTGCC chrX:8106553-8106673 110 2.03e-04 Attctttttt ttaattta ttt chr2R:6645716-6645836 26 2.03e-04 ATTTGAGCTT TTAATTAT CAGCTGCCCC chr3L:4440327-4440447 59 2.03e-04 TAAGCCGAGC TTAATTTA CTTGCGAATA chr3L:8452139-8452259 27 2.03e-04 GCGCACACAT TTAATTAT AATTATTTGT chrX:17703404-17703524 16 2.03e-04 ttaattagtt ttaattta gatttctaac chr3L:11308816-11308936 84 2.03e-04 GAGTGAATTA TTAATTTA AAATCCCCCC chr3R:14566988-14567108 96 2.03e-04 ACGTCATGCT TTAATTAT ATTGATAAGA chr3R:31354114-31354234 113 2.03e-04 TCCTTTCTTT TTAATTTA chr3L:12646231-12646351 37 2.03e-04 CCATTGCGCA TTAATTTA CACATATGCC chr3L:8065741-8065861 48 2.03e-04 TCTTATTCCT TTAATTAT ATAAATTAAA chr2R:14722831-14722951 73 2.03e-04 ATTTCGTTGA TTAATTAT AATTAACCCA chr2L:17586975-17587095 12 2.03e-04 TGTACAAATC TTAATTAT GCAAATCACG chr3R:30566639-30566759 47 2.03e-04 GAATTTTGAA TTAATTTA CATAGATCTT chr3R:9246500-9246620 16 2.03e-04 AATGAGAACT TTAATTTA AGGTGCAAAC chr3L:11378576-11378696 86 2.03e-04 TATATGAGAA TTAATTAT GGCAATTAGA chr2L:14668369-14668489 34 2.03e-04 AAAATTTAAA TTAATTTA AATTTGATTT chr3L:14645332-14645452 89 2.03e-04 CAAATGTCGC TTAATTAT GAGGATCGCT chr3L:6516240-6516360 95 2.03e-04 ACCTGGGGAA TTAATTTA TACAACCAAC chr2L:2860124-2860244 96 2.72e-04 CCGTGACATC ATAATTAA CTACTACTAA chr3R:24234860-24234980 70 2.72e-04 TCTGTTATCG ATAATTAA ATTTTTGGCC chr3R:9922781-9922901 94 2.72e-04 GCGCAAACGC ATAATTAA TTCCGCAGTG chr2R:11379712-11379832 71 2.72e-04 ACTGTGCGAA ATAATTAA AGACGCCCAG chr3R:26802865-26802985 77 2.72e-04 GCACTTGGCT ATAATTAA AATTTAAGCT chr3L:7934914-7935034 56 2.72e-04 GCGTTTTTAC ATAATTAA GGGTATATAA chr2L:1425962-1426082 83 2.72e-04 GCAATTTGCC ATAATTAA GCATTAGCCA chr2L:8289441-8289561 6 2.72e-04 CCCTA ATAATTAA ATTTATAGAA chr3L:13643346-13643466 28 2.72e-04 TATTATGTAA ATAATTAA TGGCGTGTAA chr2R:19796101-19796221 54 2.72e-04 TGCAATTAGT ATAATTAA CACAGCACGT chr3R:9359557-9359677 99 2.72e-04 aaatataatt ataattaA TTAGTGAATC chr2L:18647996-18648116 81 2.72e-04 TTGGCTGACA ATAATTAA AGCAACTACA chr3R:28860841-28860961 45 2.72e-04 CGAAGTGTAA ATAATTAA ATTTTTCTGT chr2R:14001919-14002039 40 3.16e-04 CTGAACTTCA TTAATTAG CCTCATGAAA chr3R:15653055-15653175 80 3.16e-04 GTGTTTGCTT TTAATTAG GCAGCGTGAA chr2L:17381611-17381731 25 3.16e-04 ATCCAGCATT TTAATTAG TAATTAGTCA chr3L:15319943-15320063 24 3.16e-04 TCTTCGTTCT TTAATTAG ATTTCCATCG chr2L:3830588-3830708 63 3.16e-04 GTGGTGCTCC TTAATTAG TTTCTTTCAT chr3R:9208805-9208925 38 3.16e-04 ATTTTTCTAT TTAATTAG CACACACACA chr3R:19015318-19015438 63 3.16e-04 AACTGCGCCA TTAATTAG TTCTCAGTCt chr3R:23042860-23042980 95 3.16e-04 ATCCACAATC TTAATTAG AATTTACATA chr2R:22543629-22543749 49 3.16e-04 CTCTGGCAGA TTAATTAG AGATTTCTCG chr3L:12678509-12678629 37 3.85e-04 TTTTGATTGG TAAATTAA GGCCGGGCAC chr3R:9918212-9918332 109 3.85e-04 CGAGTTTGAA TAAATTAA CAGG chr2R:7422464-7422584 5 3.85e-04 AAAT TAAATTAA TTTTATTCGA chr2L:4091922-4092042 70 3.85e-04 TGGTTCCTTT TAAATTAA TTTGGGGCAG chr2L:6236659-6236779 77 3.85e-04 TCAATAAACT TAAATTAA TTTTGTTCTG chr2R:10542597-10542717 76 4.98e-04 AATATGTACC TTAATTTT TAACGGTTTC chr2L:3730032-3730152 97 4.98e-04 TCTGTTACTA TTAATTTT TTGCCGACAA chr2R:12468030-12468150 52 4.98e-04 TGATTTGCAA CTAATTAA ATTTTTCGCA chr2L:8296439-8296559 45 4.98e-04 GATAATCCTT TTAATTTT AGGCACAGGC chr2L:14284668-14284788 77 4.98e-04 CCCAAGCAGA TTAATTTT TTGCCGCTCT chr2R:22700226-22700346 68 4.98e-04 TGGTTTTCCA TTAATTTT ATTTCCGTAT chr3L:19164480-19164600 57 4.98e-04 GCATGTCTTG ttaatttt cattttaaat chr2R:20999242-20999362 16 4.98e-04 ACAAAAAATT CTAATTAA ATATGGCATT chr3L:13105962-13106082 76 4.98e-04 CACAGAGATT TTAATTTT CTAATGAAAG chr3R:29544550-29544670 10 4.98e-04 CAGGCAATT TTAATTTT CGAAGCCCGA chr3R:10528271-10528391 74 4.98e-04 TGTATTTTTC TTAATTTT GAAAGCGTAT chr2R:10314711-10314831 37 4.98e-04 ATAGGCGACA TTAATTTT CGGCAAAACA chr3R:26023852-26023972 68 4.98e-04 GGCTTGCGTG TTAATTTT TGTGGAATGG chr2R:11930269-11930389 15 4.98e-04 GTCACAACAG TTAATTTT GAATGCAGCA chr2L:14213121-14213241 37 4.98e-04 TTTATGTTGC TTAATTTT AATGCGCAGT chr2R:15750276-15750396 7 4.98e-04 TGTATT CTAATTAA TGACGATCCC chr2R:19938084-19938204 71 4.98e-04 CAGTTTCTCT TTAATTTT TCGTTTATTT chr3R:26804281-26804401 102 4.98e-04 TGGGGAGTGC TTAATTTT TAATCGAGTC chr2L:3006326-3006446 107 4.98e-04 TTCCCCTTTA TTAATTTT GTGAGG chr3L:5619431-5619551 86 4.98e-04 CAGCGGCGTA TTAATTTT TCTAATTTGT chr3L:3386834-3386954 73 4.98e-04 tttttttttt ttaatttt atttaatttt chr2L:9445925-9446045 105 4.98e-04 ATTTGTGAGT TTAATTTT TTAGGACT chr3L:9469948-9470068 86 4.98e-04 TAATTTTCAT CTAATTAA AATGCATTAC chr3L:18402037-18402157 50 4.98e-04 TTAATTTGTG TTAATTTT TTATGATCCC chr3L:5855601-5855721 80 4.98e-04 ACTAATTTTA TTAATTTT TCAACGATAG chr3R:6226197-6226317 65 4.98e-04 GGTGATGTTT TTAATTTT TAGCATCGCT chrX:17358115-17358235 40 4.98e-04 AGATTAATTG TTAATTTT TTATTGCTGG chr3L:15702343-15702463 30 4.98e-04 ATAAAGCTGC TTAATTTT TCACTGACTC chr2L:4055020-4055140 45 4.98e-04 TTTTCGAAAT TTAATTTT GATTTTAATT chr2L:17228257-17228377 98 4.98e-04 CGCTGGATTT CTAATTAA TTTGTTGGCG chrX:17509970-17510090 60 6.35e-04 AAAATTAAAG ATAATTAT GATTACcaac chr2R:15682631-15682751 1 6.35e-04 . ATAATTTA AATTTGAAAT chr2R:7158877-7158997 83 6.35e-04 ATGTGTAAAC ATAATTTA CTCCAATTAG chr3L:6787535-6787655 109 6.35e-04 AATTATGCTA ATAATTAT AAAC chrX:3150699-3150819 34 6.35e-04 CCGCAGGGGA ATAATTTA CTTTTTTATT chr3L:4166014-4166134 101 6.35e-04 GACCATGCAA ATAATTAT GGGCAGGCAG chr2L:4051836-4051956 36 6.35e-04 TTGCCTTTAC ATAATTTA CATAATTCTA chr3R:20254857-20254977 58 6.35e-04 CCATTTGTTG ATAATTAT CAGCAAATTA chr2L:14618995-14619115 2 7.24e-04 c ttaatttg atctgcttaa chr2L:18303041-18303161 63 7.24e-04 GGAGTGACAA TTAATTAC TGAACTGAAG chr3L:5829251-5829371 10 7.24e-04 GTTGAAAGA TTAATTTG GTTGCGCTTC chr2R:15306156-15306276 57 7.24e-04 CTTATTAATG TTAATTAC TGCCGTTGCT chr2L:497861-497981 64 7.24e-04 AGTGCTGCGA TTAATTTG GCTTATCAGA chr3L:15203723-15203843 48 7.24e-04 CCATGGAATA TTAATTTG GGGCAGGTAG chr2R:20028286-20028406 56 7.24e-04 CCAAAAAGCG TTAATTAC ACTAATTATG chr3L:11224800-11224920 87 7.24e-04 TTTTTTGGGC TTAATTAC AGAAAAAATG chr3R:10590298-10590418 42 7.24e-04 TTTGCCGGCA TTAATTAC GACCACGTTT chr3R:9028796-9028916 60 7.68e-04 CCCTTCTAAT ATAATTAG CCACCgaaag chr2L:6658190-6658310 111 7.68e-04 TCAAGTAAAA ATAATTAG TA chr3L:15531641-15531761 78 7.68e-04 TATGCTAAAT ATAATTAG CGATAAGAAA chr3L:12036779-12036899 98 7.68e-04 TTTGGGGTTA ATAATTAG ACTGAAATTA chr3L:21643326-21643446 108 8.13e-04 GAATCTTTGG GTAATTAA GATAG chr2R:21194231-21194351 70 8.13e-04 TGTTTATTCA GTAATTAA CTGTGGTAAA chr3R:10299901-10300021 24 8.13e-04 CGTATGCTAC GTAATTAA GAGTACTTTC chr2R:7026673-7026793 58 8.13e-04 CCCTTTACAT GTAATTAA TCTTGATTTA chr2R:16090091-16090211 10 8.13e-04 CTCCGACAA GTAATTAA CATAAACAAC chr2R:17826004-17826124 32 9.49e-04 TTACTGATGC TAAATTAT ACAAGAGACT chrX:5618736-5618856 103 9.49e-04 GGAAGAATAC TAAATTTA AATGACTATA chr2R:18335903-18336023 11 9.49e-04 TTGTGCCGTA TAAATTAT TTAGCGGCGC chr3L:6854100-6854220 12 9.49e-04 GCATCAAAAT TAAATTAT GCTGAGCGGT chr2R:6517202-6517322 102 9.49e-04 CGAAAATTAA TAAATTTA ACAACAGTTG chrX:18910495-18910615 82 1.11e-03 TCAAAACAAT AAAATTAA TGTCTCCGCT chr3L:6309851-6309971 109 1.11e-03 AACAGAAAAA AAAATTAA TCTT chr2R:9551738-9551858 60 1.11e-03 AACAGAGACG AAAATTAA AAGAAATCAC chr2L:18948857-18948977 75 1.11e-03 AATTTTCTCG CTAATTTA TTTTATTTTC chr2L:20934860-20934980 78 1.11e-03 AATTAACCAA AAAATTAA ACCACACATA chr2R:11091785-11091905 50 1.11e-03 CGACGTGTGC AAAATTAA ACAAAACATC chr3L:19174749-19174869 12 1.11e-03 ACCATTAAAG AAAATTAA GATACAACAA chr3L:14575700-14575820 72 1.11e-03 GAACCAACCC CTAATTAT GTGCTTAGCT chr3L:12088213-12088333 26 1.11e-03 GGTAGCGTGA AAAATTAA TGTTTAGCCA chr2L:3648594-3648714 78 1.11e-03 TCATTGATGA AAAATTAA ATTGGTGCTA chr2L:3418052-3418172 66 1.11e-03 AGTGGAACAG AAAATTAA GTTTCTCAAC chr2L:3417853-3417973 98 1.11e-03 AGATAAAATG CTAATTTA TCTTGTGGCC chr3R:18050144-18050264 52 1.11e-03 CGGACAAAAA AAAATTAA AGAAATTAAA chr3L:12643914-12644034 45 1.11e-03 GCCTAATTTT AAAATTAA TGAGCGGCAT chr3R:21344565-21344685 1 1.11e-03 . AAAATTAA TTCTCCCAAA chr3R:8921495-8921615 107 1.11e-03 ATTTTCCTGC AAAATTAA TGGAAA chr2R:21560032-21560152 46 1.11e-03 CATGTGTAAG AAAATTAA AGGAAGACCT chr2L:7278282-7278402 35 1.11e-03 CGGCGTTTAT CTAATTTA CTTTTACTTA chr2R:8636105-8636225 18 1.11e-03 TTTCGTGCTC AAAATTAA CTATCCGCCC chr2R:14951094-14951214 52 1.11e-03 GTAATTCCAT AAAATTAA GTACAACGCT chr3L:20924450-20924570 59 1.11e-03 AAAAATTAAT AAAATTAA AAAAAAAAAC chrX:17511233-17511353 94 1.11e-03 TCGTAATTAG AAAATTAA CAAGTCATTT chr3R:24891410-24891530 54 1.11e-03 CTTTCTTCGC CTAATTAT GCAGCTGTtc chr2L:14247209-14247329 77 1.11e-03 AAATGTGTGA AAAATTAA TGCTCATTTA chr3R:20560760-20560880 28 1.22e-03 AATTATGAAT TAAATTAG AAATTAAGTA chr3L:19228493-19228613 113 1.22e-03 AGATAATGAA ATAATTTT chr3L:19202515-19202635 96 1.22e-03 TGAGCCTGGT ATAATTTT CATGGCTCTA chr3R:8981334-8981454 60 1.22e-03 TGCTTAATAT TAAATTAG ATTTTCATAT chr2R:19411576-19411696 2 1.30e-03 G TTAATTTC TAATTTTGGC chr2L:19313597-19313717 7 1.30e-03 CTGCTC TTAATTTC GGGTTTCAGT chr2L:12589280-12589400 80 1.30e-03 CCTGCTTAGC CTAATTAG ATAAAAATGG chr2L:9456244-9456364 79 1.30e-03 ACACGAACGC TTAATTTC TCCTTTAAAT chr2L:14450000-14450120 31 1.30e-03 AACTGTCGCC TTAATTTC AAAGGAATCG chr2R:25128173-25128293 72 1.47e-03 ATTACGGGCT GTAATTAT GCAAATTAGT chr3R:12274941-12275061 72 1.47e-03 AAGGGGGAAA GTAATTTA GGCAGCCAGC chr2L:10543152-10543272 56 1.59e-03 TAAATTGAGT CAAATTAA GCATACGAAT chr2R:22237199-22237319 29 1.59e-03 TTTATCGCCT CAAATTAA TCAACGGGTA chr3L:7953547-7953667 58 1.59e-03 GCATCTGTTG CAAATTAA ATTTGCGTTA chr3L:22399895-22400015 21 1.80e-03 ACGAAATTAA AAAATTTA CGCTTACACA chr3R:8665207-8665327 60 1.80e-03 ATGGGACTGA AAAATTTA TTATTTTTCC chr3L:161973-162093 28 1.80e-03 AGTGGCACTT AAAATTAT TGTGTCGAAG chr2L:5418158-5418278 18 1.80e-03 TATCTCCCGA CTAATTTT TCCGTGtttt chr3L:22129947-22130067 29 1.80e-03 TTGCCAACCC CTAATTTT CCCTAATTTC chr3L:12714805-12714925 80 1.80e-03 GGAATTGGGG AAAATTAT TGAGCGCACT chr3R:28596137-28596257 46 1.80e-03 TATCCTGGTT CTAATTTT CCAAATTACG chrX:17175243-17175363 71 1.80e-03 TAATCTGAAA CTAATTTT CTTTTCCATT chr2L:164265-164385 109 1.80e-03 AGCAAAAAAT AAAATTAT ATTT chr2L:14258730-14258850 70 1.80e-03 AATGTGTTCA CTAATTTT TCACTGGCTT chr3L:18422035-18422155 87 1.89e-03 TTGTTTTGGG TAAATTAC GCAAATCATT chr2R:25232874-25232994 6 1.99e-03 TCATA CTAATTAC GCGGGAAATT chr3L:18217034-18217154 19 1.99e-03 AGTCATGCAT AAAATTAG TTTCGACTTG chr3R:15582665-15582785 86 1.99e-03 TCGAGTAAAG AAAATTAG AAAACCCAAA chr2L:12615350-12615470 52 2.08e-03 CAAATTTCCT ATAATTTC AAGGAAAATT chr3L:2237630-2237750 90 2.35e-03 CGGCAAAAGA GTAATTTG TGATACCTGT chr2L:441475-441595 4 2.35e-03 GCT GTAATTTG TGTTGCATGT chr2L:2453956-2454076 93 2.35e-03 AAAACAACAT GTAATTTG TTCTAGGTGT chrX:17506417-17506537 50 2.42e-03 GGCTTACACA CAAATTAG TCACAGTTCG chr3L:20952985-20953105 9 2.42e-03 AATGGTTC CAAATTAG TCAGTGTCAC chr2R:10312269-10312389 40 2.54e-03 AATATAGCAA AAAATTAC CCGGGCCCTG chr3R:13792554-13792674 92 2.54e-03 TGGCGGGCTA AAAATTAC ACACGAACAT chr3R:4916938-4917058 68 2.54e-03 AGGTGGCCCA CTAATTTC TTCCTACCAT chr3L:1117395-1117515 64 2.63e-03 AGATCGTTGG GAAATTTA GAGAAATGTT chr2L:11187279-11187399 65 2.63e-03 TCGAGGCTGG GAAATTAT TACGAGGAAA chr3L:15200722-15200842 29 2.71e-03 TAACAGCCAT GAAATTAG ACGCACACAC chr3R:5203937-5204057 112 2.84e-03 ATCAAAGCAG AAAATTTC A chr3L:4999462-4999582 70 2.94e-03 AGCCTGCGGC GAAATTTG GTAGGGGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12298196-12298316 6.8e-05 91_[+1]_21 chr3R:13957095-13957215 6.8e-05 45_[+1]_67 chr2R:11045895-11046015 6.8e-05 90_[+1]_22 chr3R:9512464-9512584 6.8e-05 7_[+1]_105 chr2R:19676169-19676289 6.8e-05 100_[+1]_12 chr2R:24927076-24927196 6.8e-05 33_[+1]_79 chr2R:11688632-11688752 6.8e-05 96_[+1]_16 chr3L:4263377-4263497 6.8e-05 16_[+1]_96 chr2R:15915283-15915403 6.8e-05 66_[+1]_46 chr3R:11645001-11645121 6.8e-05 16_[+1]_96 chr3R:5623701-5623821 6.8e-05 3_[+1]_109 chr3R:12398147-12398267 6.8e-05 55_[+1]_57 chrX:17162718-17162838 6.8e-05 32_[+1]_80 chr2L:2474024-2474144 6.8e-05 87_[+1]_25 chr3R:17400265-17400385 6.8e-05 69_[+1]_43 chr3R:20912777-20912897 6.8e-05 25_[+1]_87 chr2R:21480446-21480566 6.8e-05 37_[+1]_75 chr3L:8073558-8073678 6.8e-05 23_[+1]_89 chrX:20640441-20640561 6.8e-05 94_[+1]_18 chr3R:13929697-13929817 6.8e-05 47_[+1]_65 chr2L:18552357-18552477 6.8e-05 39_[+1]_73 chr2L:8098587-8098707 6.8e-05 65_[+1]_47 chr3R:21413963-21414083 6.8e-05 94_[+1]_18 chr2R:15353074-15353194 6.8e-05 24_[+1]_88 chr2R:20155526-20155646 6.8e-05 10_[+1]_102 chr3R:22196776-22196896 6.8e-05 51_[+1]_61 chr3L:13585360-13585480 6.8e-05 8_[+1]_104 chrX:5212306-5212426 6.8e-05 14_[+1]_98 chr3L:16732575-16732695 6.8e-05 80_[+1]_32 chr3L:19154029-19154149 6.8e-05 60_[+1]_52 chr2R:14003141-14003261 6.8e-05 63_[+1]_49 chrX:708461-708581 6.8e-05 31_[+1]_81 chrX:8525031-8525151 6.8e-05 7_[+1]_105 chr2R:13569359-13569479 6.8e-05 21_[+1]_91 chr2L:8888349-8888469 6.8e-05 49_[+1]_63 chr3R:28580134-28580254 6.8e-05 65_[+1]_47 chr3R:16519372-16519492 6.8e-05 76_[+1]_36 chr2L:19847794-19847914 6.8e-05 71_[+1]_41 chr2L:17768730-17768850 6.8e-05 82_[+1]_30 chr2R:12012322-12012442 6.8e-05 46_[+1]_66 chr3R:16030581-16030701 6.8e-05 28_[+1]_84 chr3L:22237825-22237945 6.8e-05 104_[+1]_8 chr3R:25457467-25457587 6.8e-05 108_[+1]_4 chr3R:16279363-16279483 6.8e-05 103_[+1]_9 chr2L:14580843-14580963 0.0002 41_[+1]_71 chrX:8106553-8106673 0.0002 109_[+1]_3 chr2R:6645716-6645836 0.0002 25_[+1]_87 chr3L:4440327-4440447 0.0002 58_[+1]_54 chr3L:8452139-8452259 0.0002 26_[+1]_86 chrX:17703404-17703524 0.0002 15_[+1]_97 chr3L:11308816-11308936 0.0002 83_[+1]_29 chr3R:14566988-14567108 0.0002 95_[+1]_17 chr3R:31354114-31354234 0.0002 112_[+1] chr3L:12646231-12646351 0.0002 36_[+1]_76 chr3L:8065741-8065861 0.0002 47_[+1]_65 chr2R:14722831-14722951 0.0002 72_[+1]_40 chr2L:17586975-17587095 0.0002 11_[+1]_101 chr3R:30566639-30566759 0.0002 46_[+1]_66 chr3R:9246500-9246620 0.0002 15_[+1]_97 chr3L:11378576-11378696 0.0002 85_[+1]_27 chr2L:14668369-14668489 0.0002 33_[+1]_79 chr3L:14645332-14645452 0.0002 88_[+1]_24 chr3L:6516240-6516360 0.0002 94_[+1]_18 chr2L:2860124-2860244 0.00027 95_[+1]_17 chr3R:24234860-24234980 0.00027 69_[+1]_43 chr3R:9922781-9922901 0.00027 93_[+1]_19 chr2R:11379712-11379832 0.00027 70_[+1]_42 chr3R:26802865-26802985 0.00027 76_[+1]_36 chr3L:7934914-7935034 0.00027 55_[+1]_57 chr2L:1425962-1426082 0.00027 82_[+1]_30 chr2L:8289441-8289561 0.00027 5_[+1]_107 chr3L:13643346-13643466 0.00027 27_[+1]_85 chr2R:19796101-19796221 0.00027 53_[+1]_59 chr3R:9359557-9359677 0.00027 98_[+1]_14 chr2L:18647996-18648116 0.00027 80_[+1]_32 chr3R:28860841-28860961 0.00027 44_[+1]_68 chr2R:14001919-14002039 0.00032 39_[+1]_73 chr3R:15653055-15653175 0.00032 79_[+1]_33 chr2L:17381611-17381731 0.00032 24_[+1]_88 chr3L:15319943-15320063 0.00032 23_[+1]_89 chr2L:3830588-3830708 0.00032 62_[+1]_50 chr3R:9208805-9208925 0.00032 37_[+1]_75 chr3R:19015318-19015438 0.00032 62_[+1]_50 chr3R:23042860-23042980 0.00032 94_[+1]_18 chr2R:22543629-22543749 0.00032 48_[+1]_64 chr3L:12678509-12678629 0.00039 36_[+1]_76 chr3R:9918212-9918332 0.00039 108_[+1]_4 chr2R:7422464-7422584 0.00039 4_[+1]_108 chr2L:4091922-4092042 0.00039 69_[+1]_43 chr2L:6236659-6236779 0.00039 76_[+1]_36 chr2R:10542597-10542717 0.0005 75_[+1]_37 chr2L:3730032-3730152 0.0005 96_[+1]_16 chr2R:12468030-12468150 0.0005 51_[+1]_61 chr2L:8296439-8296559 0.0005 44_[+1]_68 chr2L:14284668-14284788 0.0005 76_[+1]_36 chr2R:22700226-22700346 0.0005 67_[+1]_45 chr3L:19164480-19164600 0.0005 56_[+1]_56 chr2R:20999242-20999362 0.0005 15_[+1]_97 chr3L:13105962-13106082 0.0005 75_[+1]_37 chr3R:29544550-29544670 0.0005 9_[+1]_103 chr3R:10528271-10528391 0.0005 73_[+1]_39 chr2R:10314711-10314831 0.0005 36_[+1]_76 chr3R:26023852-26023972 0.0005 67_[+1]_45 chr2R:11930269-11930389 0.0005 14_[+1]_98 chr2L:14213121-14213241 0.0005 36_[+1]_76 chr2R:15750276-15750396 0.0005 6_[+1]_106 chr2R:19938084-19938204 0.0005 70_[+1]_42 chr3R:26804281-26804401 0.0005 101_[+1]_11 chr2L:3006326-3006446 0.0005 106_[+1]_6 chr3L:5619431-5619551 0.0005 85_[+1]_27 chr3L:3386834-3386954 0.0005 72_[+1]_40 chr2L:9445925-9446045 0.0005 104_[+1]_8 chr3L:9469948-9470068 0.0005 85_[+1]_27 chr3L:18402037-18402157 0.0005 49_[+1]_63 chr3L:5855601-5855721 0.0005 79_[+1]_33 chr3R:6226197-6226317 0.0005 64_[+1]_48 chrX:17358115-17358235 0.0005 39_[+1]_73 chr3L:15702343-15702463 0.0005 29_[+1]_83 chr2L:4055020-4055140 0.0005 44_[+1]_68 chr2L:17228257-17228377 0.0005 97_[+1]_15 chrX:17509970-17510090 0.00063 59_[+1]_53 chr2R:15682631-15682751 0.00063 [+1]_112 chr2R:7158877-7158997 0.00063 82_[+1]_30 chr3L:6787535-6787655 0.00063 108_[+1]_4 chrX:3150699-3150819 0.00063 33_[+1]_79 chr3L:4166014-4166134 0.00063 100_[+1]_12 chr2L:4051836-4051956 0.00063 35_[+1]_77 chr3R:20254857-20254977 0.00063 57_[+1]_55 chr2L:14618995-14619115 0.00072 1_[+1]_111 chr2L:18303041-18303161 0.00072 62_[+1]_50 chr3L:5829251-5829371 0.00072 9_[+1]_103 chr2R:15306156-15306276 0.00072 56_[+1]_56 chr2L:497861-497981 0.00072 63_[+1]_49 chr3L:15203723-15203843 0.00072 47_[+1]_65 chr2R:20028286-20028406 0.00072 55_[+1]_57 chr3L:11224800-11224920 0.00072 86_[+1]_26 chr3R:10590298-10590418 0.00072 41_[+1]_71 chr3R:9028796-9028916 0.00077 59_[+1]_53 chr2L:6658190-6658310 0.00077 110_[+1]_2 chr3L:15531641-15531761 0.00077 77_[+1]_35 chr3L:12036779-12036899 0.00077 97_[+1]_15 chr3L:21643326-21643446 0.00081 107_[+1]_5 chr2R:21194231-21194351 0.00081 69_[+1]_43 chr3R:10299901-10300021 0.00081 23_[+1]_89 chr2R:7026673-7026793 0.00081 57_[+1]_55 chr2R:16090091-16090211 0.00081 9_[+1]_103 chr2R:17826004-17826124 0.00095 31_[+1]_81 chrX:5618736-5618856 0.00095 102_[+1]_10 chr2R:18335903-18336023 0.00095 10_[+1]_102 chr3L:6854100-6854220 0.00095 11_[+1]_101 chr2R:6517202-6517322 0.00095 101_[+1]_11 chrX:18910495-18910615 0.0011 81_[+1]_31 chr3L:6309851-6309971 0.0011 108_[+1]_4 chr2R:9551738-9551858 0.0011 59_[+1]_53 chr2L:18948857-18948977 0.0011 74_[+1]_38 chr2L:20934860-20934980 0.0011 77_[+1]_35 chr2R:11091785-11091905 0.0011 49_[+1]_63 chr3L:19174749-19174869 0.0011 11_[+1]_101 chr3L:14575700-14575820 0.0011 71_[+1]_41 chr3L:12088213-12088333 0.0011 25_[+1]_87 chr2L:3648594-3648714 0.0011 77_[+1]_35 chr2L:3418052-3418172 0.0011 65_[+1]_47 chr2L:3417853-3417973 0.0011 97_[+1]_15 chr3R:18050144-18050264 0.0011 51_[+1]_61 chr3L:12643914-12644034 0.0011 44_[+1]_68 chr3R:21344565-21344685 0.0011 [+1]_112 chr3R:8921495-8921615 0.0011 106_[+1]_6 chr2R:21560032-21560152 0.0011 45_[+1]_67 chr2L:7278282-7278402 0.0011 34_[+1]_78 chr2R:8636105-8636225 0.0011 17_[+1]_95 chr2R:14951094-14951214 0.0011 51_[+1]_61 chr3L:20924450-20924570 0.0011 58_[+1]_54 chrX:17511233-17511353 0.0011 93_[+1]_19 chr3R:24891410-24891530 0.0011 53_[+1]_59 chr2L:14247209-14247329 0.0011 76_[+1]_36 chr3R:20560760-20560880 0.0012 27_[+1]_85 chr3L:19228493-19228613 0.0012 112_[+1] chr3L:19202515-19202635 0.0012 95_[+1]_17 chr3R:8981334-8981454 0.0012 59_[+1]_53 chr2R:19411576-19411696 0.0013 1_[+1]_111 chr2L:19313597-19313717 0.0013 6_[+1]_106 chr2L:12589280-12589400 0.0013 79_[+1]_33 chr2L:9456244-9456364 0.0013 78_[+1]_34 chr2L:14450000-14450120 0.0013 30_[+1]_82 chr2R:25128173-25128293 0.0015 71_[+1]_41 chr3R:12274941-12275061 0.0015 71_[+1]_41 chr2L:10543152-10543272 0.0016 55_[+1]_57 chr2R:22237199-22237319 0.0016 28_[+1]_84 chr3L:7953547-7953667 0.0016 57_[+1]_55 chr3L:22399895-22400015 0.0018 20_[+1]_92 chr3R:8665207-8665327 0.0018 59_[+1]_53 chr3L:161973-162093 0.0018 27_[+1]_85 chr2L:5418158-5418278 0.0018 17_[+1]_95 chr3L:22129947-22130067 0.0018 28_[+1]_84 chr3L:12714805-12714925 0.0018 79_[+1]_33 chr3R:28596137-28596257 0.0018 45_[+1]_67 chrX:17175243-17175363 0.0018 70_[+1]_42 chr2L:164265-164385 0.0018 108_[+1]_4 chr2L:14258730-14258850 0.0018 69_[+1]_43 chr3L:18422035-18422155 0.0019 86_[+1]_26 chr2R:25232874-25232994 0.002 5_[+1]_107 chr3L:18217034-18217154 0.002 18_[+1]_94 chr3R:15582665-15582785 0.002 85_[+1]_27 chr2L:12615350-12615470 0.0021 51_[+1]_61 chr3L:2237630-2237750 0.0023 89_[+1]_23 chr2L:441475-441595 0.0023 3_[+1]_109 chr2L:2453956-2454076 0.0023 92_[+1]_20 chrX:17506417-17506537 0.0024 49_[+1]_63 chr3L:20952985-20953105 0.0024 8_[+1]_104 chr2R:10312269-10312389 0.0025 39_[+1]_73 chr3R:13792554-13792674 0.0025 91_[+1]_21 chr3R:4916938-4917058 0.0025 67_[+1]_45 chr3L:1117395-1117515 0.0026 63_[+1]_49 chr2L:11187279-11187399 0.0026 64_[+1]_48 chr3L:15200722-15200842 0.0027 28_[+1]_84 chr3R:5203937-5204057 0.0028 111_[+1]_1 chr3L:4999462-4999582 0.0029 69_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTAATTAA width=8 seqs=217 chr3L:12298196-12298316 ( 92) TTAATTAA 1 chr3R:13957095-13957215 ( 46) TTAATTAA 1 chr2R:11045895-11046015 ( 91) TTAATTAA 1 chr3R:9512464-9512584 ( 8) TTAATTAA 1 chr2R:19676169-19676289 ( 101) TTAATTAA 1 chr2R:24927076-24927196 ( 34) TTAATTAA 1 chr2R:11688632-11688752 ( 97) TTAATTAA 1 chr3L:4263377-4263497 ( 17) TTAATTAA 1 chr2R:15915283-15915403 ( 67) TTAATTAA 1 chr3R:11645001-11645121 ( 17) TTAATTAA 1 chr3R:5623701-5623821 ( 4) TTAATTAA 1 chr3R:12398147-12398267 ( 56) TTAATTAA 1 chrX:17162718-17162838 ( 33) TTAATTAA 1 chr2L:2474024-2474144 ( 88) TTAATTAA 1 chr3R:17400265-17400385 ( 70) TTAATTAA 1 chr3R:20912777-20912897 ( 26) TTAATTAA 1 chr2R:21480446-21480566 ( 38) TTAATTAA 1 chr3L:8073558-8073678 ( 24) TTAATTAA 1 chrX:20640441-20640561 ( 95) TTAATTAA 1 chr3R:13929697-13929817 ( 48) TTAATTAA 1 chr2L:18552357-18552477 ( 40) TTAATTAA 1 chr2L:8098587-8098707 ( 66) TTAATTAA 1 chr3R:21413963-21414083 ( 95) TTAATTAA 1 chr2R:15353074-15353194 ( 25) TTAATTAA 1 chr2R:20155526-20155646 ( 11) TTAATTAA 1 chr3R:22196776-22196896 ( 52) TTAATTAA 1 chr3L:13585360-13585480 ( 9) TTAATTAA 1 chrX:5212306-5212426 ( 15) TTAATTAA 1 chr3L:16732575-16732695 ( 81) TTAATTAA 1 chr3L:19154029-19154149 ( 61) TTAATTAA 1 chr2R:14003141-14003261 ( 64) TTAATTAA 1 chrX:708461-708581 ( 32) TTAATTAA 1 chrX:8525031-8525151 ( 8) TTAATTAA 1 chr2R:13569359-13569479 ( 22) TTAATTAA 1 chr2L:8888349-8888469 ( 50) TTAATTAA 1 chr3R:28580134-28580254 ( 66) TTAATTAA 1 chr3R:16519372-16519492 ( 77) TTAATTAA 1 chr2L:19847794-19847914 ( 72) TTAATTAA 1 chr2L:17768730-17768850 ( 83) TTAATTAA 1 chr2R:12012322-12012442 ( 47) TTAATTAA 1 chr3R:16030581-16030701 ( 29) TTAATTAA 1 chr3L:22237825-22237945 ( 105) TTAATTAA 1 chr3R:25457467-25457587 ( 109) TTAATTAA 1 chr3R:16279363-16279483 ( 104) TTAATTAA 1 chr2L:14580843-14580963 ( 42) TTAATTTA 1 chrX:8106553-8106673 ( 110) TTAATTTA 1 chr2R:6645716-6645836 ( 26) TTAATTAT 1 chr3L:4440327-4440447 ( 59) TTAATTTA 1 chr3L:8452139-8452259 ( 27) TTAATTAT 1 chrX:17703404-17703524 ( 16) TTAATTTA 1 chr3L:11308816-11308936 ( 84) TTAATTTA 1 chr3R:14566988-14567108 ( 96) TTAATTAT 1 chr3R:31354114-31354234 ( 113) TTAATTTA 1 chr3L:12646231-12646351 ( 37) TTAATTTA 1 chr3L:8065741-8065861 ( 48) TTAATTAT 1 chr2R:14722831-14722951 ( 73) TTAATTAT 1 chr2L:17586975-17587095 ( 12) TTAATTAT 1 chr3R:30566639-30566759 ( 47) TTAATTTA 1 chr3R:9246500-9246620 ( 16) TTAATTTA 1 chr3L:11378576-11378696 ( 86) TTAATTAT 1 chr2L:14668369-14668489 ( 34) TTAATTTA 1 chr3L:14645332-14645452 ( 89) TTAATTAT 1 chr3L:6516240-6516360 ( 95) TTAATTTA 1 chr2L:2860124-2860244 ( 96) ATAATTAA 1 chr3R:24234860-24234980 ( 70) ATAATTAA 1 chr3R:9922781-9922901 ( 94) ATAATTAA 1 chr2R:11379712-11379832 ( 71) ATAATTAA 1 chr3R:26802865-26802985 ( 77) ATAATTAA 1 chr3L:7934914-7935034 ( 56) ATAATTAA 1 chr2L:1425962-1426082 ( 83) ATAATTAA 1 chr2L:8289441-8289561 ( 6) ATAATTAA 1 chr3L:13643346-13643466 ( 28) ATAATTAA 1 chr2R:19796101-19796221 ( 54) ATAATTAA 1 chr3R:9359557-9359677 ( 99) ATAATTAA 1 chr2L:18647996-18648116 ( 81) ATAATTAA 1 chr3R:28860841-28860961 ( 45) ATAATTAA 1 chr2R:14001919-14002039 ( 40) TTAATTAG 1 chr3R:15653055-15653175 ( 80) TTAATTAG 1 chr2L:17381611-17381731 ( 25) TTAATTAG 1 chr3L:15319943-15320063 ( 24) TTAATTAG 1 chr2L:3830588-3830708 ( 63) TTAATTAG 1 chr3R:9208805-9208925 ( 38) TTAATTAG 1 chr3R:19015318-19015438 ( 63) TTAATTAG 1 chr3R:23042860-23042980 ( 95) TTAATTAG 1 chr2R:22543629-22543749 ( 49) TTAATTAG 1 chr3L:12678509-12678629 ( 37) TAAATTAA 1 chr3R:9918212-9918332 ( 109) TAAATTAA 1 chr2R:7422464-7422584 ( 5) TAAATTAA 1 chr2L:4091922-4092042 ( 70) TAAATTAA 1 chr2L:6236659-6236779 ( 77) TAAATTAA 1 chr2R:10542597-10542717 ( 76) TTAATTTT 1 chr2L:3730032-3730152 ( 97) TTAATTTT 1 chr2R:12468030-12468150 ( 52) CTAATTAA 1 chr2L:8296439-8296559 ( 45) TTAATTTT 1 chr2L:14284668-14284788 ( 77) TTAATTTT 1 chr2R:22700226-22700346 ( 68) TTAATTTT 1 chr3L:19164480-19164600 ( 57) TTAATTTT 1 chr2R:20999242-20999362 ( 16) CTAATTAA 1 chr3L:13105962-13106082 ( 76) TTAATTTT 1 chr3R:29544550-29544670 ( 10) TTAATTTT 1 chr3R:10528271-10528391 ( 74) TTAATTTT 1 chr2R:10314711-10314831 ( 37) TTAATTTT 1 chr3R:26023852-26023972 ( 68) TTAATTTT 1 chr2R:11930269-11930389 ( 15) TTAATTTT 1 chr2L:14213121-14213241 ( 37) TTAATTTT 1 chr2R:15750276-15750396 ( 7) CTAATTAA 1 chr2R:19938084-19938204 ( 71) TTAATTTT 1 chr3R:26804281-26804401 ( 102) TTAATTTT 1 chr2L:3006326-3006446 ( 107) TTAATTTT 1 chr3L:5619431-5619551 ( 86) TTAATTTT 1 chr3L:3386834-3386954 ( 73) TTAATTTT 1 chr2L:9445925-9446045 ( 105) TTAATTTT 1 chr3L:9469948-9470068 ( 86) CTAATTAA 1 chr3L:18402037-18402157 ( 50) TTAATTTT 1 chr3L:5855601-5855721 ( 80) TTAATTTT 1 chr3R:6226197-6226317 ( 65) TTAATTTT 1 chrX:17358115-17358235 ( 40) TTAATTTT 1 chr3L:15702343-15702463 ( 30) TTAATTTT 1 chr2L:4055020-4055140 ( 45) TTAATTTT 1 chr2L:17228257-17228377 ( 98) CTAATTAA 1 chrX:17509970-17510090 ( 60) ATAATTAT 1 chr2R:15682631-15682751 ( 1) ATAATTTA 1 chr2R:7158877-7158997 ( 83) ATAATTTA 1 chr3L:6787535-6787655 ( 109) ATAATTAT 1 chrX:3150699-3150819 ( 34) ATAATTTA 1 chr3L:4166014-4166134 ( 101) ATAATTAT 1 chr2L:4051836-4051956 ( 36) ATAATTTA 1 chr3R:20254857-20254977 ( 58) ATAATTAT 1 chr2L:14618995-14619115 ( 2) TTAATTTG 1 chr2L:18303041-18303161 ( 63) TTAATTAC 1 chr3L:5829251-5829371 ( 10) TTAATTTG 1 chr2R:15306156-15306276 ( 57) TTAATTAC 1 chr2L:497861-497981 ( 64) TTAATTTG 1 chr3L:15203723-15203843 ( 48) TTAATTTG 1 chr2R:20028286-20028406 ( 56) TTAATTAC 1 chr3L:11224800-11224920 ( 87) TTAATTAC 1 chr3R:10590298-10590418 ( 42) TTAATTAC 1 chr3R:9028796-9028916 ( 60) ATAATTAG 1 chr2L:6658190-6658310 ( 111) ATAATTAG 1 chr3L:15531641-15531761 ( 78) ATAATTAG 1 chr3L:12036779-12036899 ( 98) ATAATTAG 1 chr3L:21643326-21643446 ( 108) GTAATTAA 1 chr2R:21194231-21194351 ( 70) GTAATTAA 1 chr3R:10299901-10300021 ( 24) GTAATTAA 1 chr2R:7026673-7026793 ( 58) GTAATTAA 1 chr2R:16090091-16090211 ( 10) GTAATTAA 1 chr2R:17826004-17826124 ( 32) TAAATTAT 1 chrX:5618736-5618856 ( 103) TAAATTTA 1 chr2R:18335903-18336023 ( 11) TAAATTAT 1 chr3L:6854100-6854220 ( 12) TAAATTAT 1 chr2R:6517202-6517322 ( 102) TAAATTTA 1 chrX:18910495-18910615 ( 82) AAAATTAA 1 chr3L:6309851-6309971 ( 109) AAAATTAA 1 chr2R:9551738-9551858 ( 60) AAAATTAA 1 chr2L:18948857-18948977 ( 75) CTAATTTA 1 chr2L:20934860-20934980 ( 78) AAAATTAA 1 chr2R:11091785-11091905 ( 50) AAAATTAA 1 chr3L:19174749-19174869 ( 12) AAAATTAA 1 chr3L:14575700-14575820 ( 72) CTAATTAT 1 chr3L:12088213-12088333 ( 26) AAAATTAA 1 chr2L:3648594-3648714 ( 78) AAAATTAA 1 chr2L:3418052-3418172 ( 66) AAAATTAA 1 chr2L:3417853-3417973 ( 98) CTAATTTA 1 chr3R:18050144-18050264 ( 52) AAAATTAA 1 chr3L:12643914-12644034 ( 45) AAAATTAA 1 chr3R:21344565-21344685 ( 1) AAAATTAA 1 chr3R:8921495-8921615 ( 107) AAAATTAA 1 chr2R:21560032-21560152 ( 46) AAAATTAA 1 chr2L:7278282-7278402 ( 35) CTAATTTA 1 chr2R:8636105-8636225 ( 18) AAAATTAA 1 chr2R:14951094-14951214 ( 52) AAAATTAA 1 chr3L:20924450-20924570 ( 59) AAAATTAA 1 chrX:17511233-17511353 ( 94) AAAATTAA 1 chr3R:24891410-24891530 ( 54) CTAATTAT 1 chr2L:14247209-14247329 ( 77) AAAATTAA 1 chr3R:20560760-20560880 ( 28) TAAATTAG 1 chr3L:19228493-19228613 ( 113) ATAATTTT 1 chr3L:19202515-19202635 ( 96) ATAATTTT 1 chr3R:8981334-8981454 ( 60) TAAATTAG 1 chr2R:19411576-19411696 ( 2) TTAATTTC 1 chr2L:19313597-19313717 ( 7) TTAATTTC 1 chr2L:12589280-12589400 ( 80) CTAATTAG 1 chr2L:9456244-9456364 ( 79) TTAATTTC 1 chr2L:14450000-14450120 ( 31) TTAATTTC 1 chr2R:25128173-25128293 ( 72) GTAATTAT 1 chr3R:12274941-12275061 ( 72) GTAATTTA 1 chr2L:10543152-10543272 ( 56) CAAATTAA 1 chr2R:22237199-22237319 ( 29) CAAATTAA 1 chr3L:7953547-7953667 ( 58) CAAATTAA 1 chr3L:22399895-22400015 ( 21) AAAATTTA 1 chr3R:8665207-8665327 ( 60) AAAATTTA 1 chr3L:161973-162093 ( 28) AAAATTAT 1 chr2L:5418158-5418278 ( 18) CTAATTTT 1 chr3L:22129947-22130067 ( 29) CTAATTTT 1 chr3L:12714805-12714925 ( 80) AAAATTAT 1 chr3R:28596137-28596257 ( 46) CTAATTTT 1 chrX:17175243-17175363 ( 71) CTAATTTT 1 chr2L:164265-164385 ( 109) AAAATTAT 1 chr2L:14258730-14258850 ( 70) CTAATTTT 1 chr3L:18422035-18422155 ( 87) TAAATTAC 1 chr2R:25232874-25232994 ( 6) CTAATTAC 1 chr3L:18217034-18217154 ( 19) AAAATTAG 1 chr3R:15582665-15582785 ( 86) AAAATTAG 1 chr2L:12615350-12615470 ( 52) ATAATTTC 1 chr3L:2237630-2237750 ( 90) GTAATTTG 1 chr2L:441475-441595 ( 4) GTAATTTG 1 chr2L:2453956-2454076 ( 93) GTAATTTG 1 chrX:17506417-17506537 ( 50) CAAATTAG 1 chr3L:20952985-20953105 ( 9) CAAATTAG 1 chr2R:10312269-10312389 ( 40) AAAATTAC 1 chr3R:13792554-13792674 ( 92) AAAATTAC 1 chr3R:4916938-4917058 ( 68) CTAATTTC 1 chr3L:1117395-1117515 ( 64) GAAATTTA 1 chr2L:11187279-11187399 ( 65) GAAATTAT 1 chr3L:15200722-15200842 ( 29) GAAATTAG 1 chr3R:5203937-5204057 ( 112) AAAATTTC 1 chr3L:4999462-4999582 ( 70) GAAATTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.59065 E= 4.8e-084 -21 -93 -159 92 -37 -1441 -1441 135 172 -1441 -1441 -1441 172 -1441 -1441 -1441 -1441 -1441 -1441 174 -1441 -1441 -1441 174 115 -1441 -1441 13 84 -145 -54 -27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 217 E= 4.8e-084 0.262673 0.105991 0.064516 0.566820 0.235023 0.000000 0.000000 0.764977 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.672811 0.000000 0.000000 0.327189 0.543779 0.073733 0.133641 0.248848 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAATTAA MEME-1 regular expression -------------------------------------------------------------------------------- [TA][TA]AATT[AT][AT] -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGGC MEME-2 width = 8 sites = 8 llr = 90 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 1:1a:::8 probability G 9a9:9aa3 matrix T :::::::: bits 2.4 * * ** 2.1 * * ** 1.9 **** ** 1.7 ******* Relative 1.4 ******** Entropy 1.2 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22399895-22400015 88 2.24e-06 CAGGGAAGGC GGGCGGGC AGTGAAATCT chr2L:1425962-1426082 18 2.24e-06 CAGCGGAACT GGGCGGGC TGCACACACA chr2L:9445925-9446045 9 2.24e-06 GGAAAAGT GGGCGGGC TAGGGGCAGA chr3L:5619431-5619551 42 4.41e-06 TGGGCCGAGG GGGCGGGG AAAGTTCTTT chr3L:9469948-9470068 2 4.41e-06 G GGGCGGGG TTTTACCAAC chr3L:2237630-2237750 31 9.06e-06 ATAGCAGCTC CGGCGGGC AATTAAGTCG chr3L:12678509-12678629 45 9.06e-06 GGTAAATTAA GGCCGGGC ACCCGGGGCG chr3L:4166014-4166134 109 1.25e-05 AAATAATTAT GGGCAGGC AGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22399895-22400015 2.2e-06 87_[+2]_25 chr2L:1425962-1426082 2.2e-06 17_[+2]_95 chr2L:9445925-9446045 2.2e-06 8_[+2]_104 chr3L:5619431-5619551 4.4e-06 41_[+2]_71 chr3L:9469948-9470068 4.4e-06 1_[+2]_111 chr3L:2237630-2237750 9.1e-06 30_[+2]_82 chr3L:12678509-12678629 9.1e-06 44_[+2]_68 chr3L:4166014-4166134 1.3e-05 108_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGGC width=8 seqs=8 chr3L:22399895-22400015 ( 88) GGGCGGGC 1 chr2L:1425962-1426082 ( 18) GGGCGGGC 1 chr2L:9445925-9446045 ( 9) GGGCGGGC 1 chr3L:5619431-5619551 ( 42) GGGCGGGG 1 chr3L:9469948-9470068 ( 2) GGGCGGGG 1 chr3L:2237630-2237750 ( 31) CGGCGGGC 1 chr3L:12678509-12678629 ( 45) GGCCGGGC 1 chr3L:4166014-4166134 ( 109) GGGCAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.5e+002 -965 -69 217 -965 -965 -965 236 -965 -965 -69 217 -965 -965 231 -965 -965 -128 -965 217 -965 -965 -965 236 -965 -965 -965 236 -965 -965 189 36 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+002 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGC MEME-2 regular expression -------------------------------------------------------------------------------- GGGCGGG[CG] -------------------------------------------------------------------------------- Time 13.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACR MEME-3 width = 8 sites = 33 llr = 292 E-value = 4.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACR MEME-3 Description -------------------------------------------------------------------------------- Simplified A :81a:a15 pos.-specific C a19:9:92 probability G :1::1::4 matrix T :::::::: bits 2.4 * 2.1 * 1.9 * * 1.7 * ***** Relative 1.4 * ***** Entropy 1.2 * ***** (12.8 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9512464-9512584 103 9.03e-06 CTCGCACAAA CACACACG CACCACTGCA chr2R:10314711-10314831 77 9.03e-06 CATCGATTTC CACACACG CACCCCACTC chr2R:24927076-24927196 87 9.03e-06 AACTCAGAAA CACACACG AAAGCTAATT chr2L:2474024-2474144 13 9.03e-06 TAGCTCAAAA CACACACG TACGGGCTAG chr2L:6534576-6534696 92 9.03e-06 CACACACTCG CACACACG CACACCGATG chr3R:8921495-8921615 47 9.03e-06 AAAATATTTA CACACACG CTGATGTTTC chr2R:22700226-22700346 39 2.31e-05 ctcacacacc cacacaca TGTGTCTATG chr3L:15200722-15200842 40 2.31e-05 AAATTAGACG CACACACA TGTGACCATG chr3L:13105962-13106082 62 2.31e-05 ATTGTGTGCG CACACACA GAGATTTTAA chrX:3150699-3150819 3 2.31e-05 ca cacacaca cCAAAAACGT chr3R:21344565-21344685 21 2.31e-05 CTCCCAAACA CACACACA TAAAGCGAAT chr2L:8098587-8098707 37 2.31e-05 CACACTCACT CACACACA TCTAACACTT chr2R:20028286-20028406 19 2.31e-05 CACGCACTTT CACACACA ATTTTCTGCA chr2L:1425962-1426082 28 2.31e-05 GGGCGGGCTG CACACACA AATGAAATTC chr3R:9208805-9208925 46 2.31e-05 ATTTAATTAG CACACACA CAAGCACACA chr3L:19154029-19154149 43 2.31e-05 cacacacgag cacacaca cacacGGGTA chr3R:14005904-14006024 56 3.24e-05 CCCATTTACT CACACACC GACGCGGGCA chr3L:13643346-13643466 79 3.24e-05 AAAAAATTAA CACACACC GACAAAACGA chr3L:8452139-8452259 18 4.73e-05 TCGAGCCCGG CGCACACA TTTAATTATA chr2R:25128173-25128293 8 4.73e-05 TAAAGGG CGCACACA ATCAATTCGT chr2R:7158877-7158997 14 5.33e-05 TTCCCCAATC CCCACACG ATTCTTCCCC chr3L:7953547-7953667 89 8.97e-05 TTTCTATAAA CACACAAG CGTTGAGTTG chr2L:497861-497981 11 8.97e-05 TAGAGCCAGA CAAACACG TTCACATGCC chr3R:28580134-28580254 91 8.97e-05 AACTGCTCGT CAAACACG CTCATGCCCG chrX:18910495-18910615 1 1.32e-04 . CACACAAA CTAGAAGAAT chr3R:9028796-9028916 7 1.32e-04 CACATA CACACAAA TTAGTTATAA chr2L:9456244-9456364 100 1.32e-04 TTTAAATATT CACACAAA ACGTTGGCTG chr2L:164265-164385 75 1.32e-04 GAGGCACCAG CAAACACA TGAAACACTG chr2R:17826004-17826124 98 1.47e-04 TCCAAAAAAT CACAGACG CAGACACAAA chr3L:7934914-7935034 7 1.47e-04 AATGAC CACAGACG TCAGCTGATG chr2R:6517202-6517322 53 1.47e-04 GCGGGCACGG CGCACACC AGAAATTTGT chr3R:5203937-5204057 57 1.66e-04 ATCAGAATTT CCCACACC AGCTTTCTGC chrX:3043158-3043278 35 1.94e-04 CCAAATAAAA CAAACACC TTAGCCTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9512464-9512584 9e-06 102_[+3]_10 chr2R:10314711-10314831 9e-06 76_[+3]_36 chr2R:24927076-24927196 9e-06 86_[+3]_26 chr2L:2474024-2474144 9e-06 12_[+3]_100 chr2L:6534576-6534696 9e-06 91_[+3]_21 chr3R:8921495-8921615 9e-06 46_[+3]_66 chr2R:22700226-22700346 2.3e-05 38_[+3]_74 chr3L:15200722-15200842 2.3e-05 39_[+3]_73 chr3L:13105962-13106082 2.3e-05 61_[+3]_51 chrX:3150699-3150819 2.3e-05 2_[+3]_110 chr3R:21344565-21344685 2.3e-05 20_[+3]_92 chr2L:8098587-8098707 2.3e-05 36_[+3]_76 chr2R:20028286-20028406 2.3e-05 18_[+3]_94 chr2L:1425962-1426082 2.3e-05 27_[+3]_85 chr3R:9208805-9208925 2.3e-05 45_[+3]_67 chr3L:19154029-19154149 2.3e-05 42_[+3]_70 chr3R:14005904-14006024 3.2e-05 55_[+3]_57 chr3L:13643346-13643466 3.2e-05 78_[+3]_34 chr3L:8452139-8452259 4.7e-05 17_[+3]_95 chr2R:25128173-25128293 4.7e-05 7_[+3]_105 chr2R:7158877-7158997 5.3e-05 13_[+3]_99 chr3L:7953547-7953667 9e-05 88_[+3]_24 chr2L:497861-497981 9e-05 10_[+3]_102 chr3R:28580134-28580254 9e-05 90_[+3]_22 chrX:18910495-18910615 0.00013 [+3]_112 chr3R:9028796-9028916 0.00013 6_[+3]_106 chr2L:9456244-9456364 0.00013 99_[+3]_13 chr2L:164265-164385 0.00013 74_[+3]_38 chr2R:17826004-17826124 0.00015 97_[+3]_15 chr3L:7934914-7935034 0.00015 6_[+3]_106 chr2R:6517202-6517322 0.00015 52_[+3]_60 chr3R:5203937-5204057 0.00017 56_[+3]_56 chrX:3043158-3043278 0.00019 34_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACR width=8 seqs=33 chr3R:9512464-9512584 ( 103) CACACACG 1 chr2R:10314711-10314831 ( 77) CACACACG 1 chr2R:24927076-24927196 ( 87) CACACACG 1 chr2L:2474024-2474144 ( 13) CACACACG 1 chr2L:6534576-6534696 ( 92) CACACACG 1 chr3R:8921495-8921615 ( 47) CACACACG 1 chr2R:22700226-22700346 ( 39) CACACACA 1 chr3L:15200722-15200842 ( 40) CACACACA 1 chr3L:13105962-13106082 ( 62) CACACACA 1 chrX:3150699-3150819 ( 3) CACACACA 1 chr3R:21344565-21344685 ( 21) CACACACA 1 chr2L:8098587-8098707 ( 37) CACACACA 1 chr2R:20028286-20028406 ( 19) CACACACA 1 chr2L:1425962-1426082 ( 28) CACACACA 1 chr3R:9208805-9208925 ( 46) CACACACA 1 chr3L:19154029-19154149 ( 43) CACACACA 1 chr3R:14005904-14006024 ( 56) CACACACC 1 chr3L:13643346-13643466 ( 79) CACACACC 1 chr3L:8452139-8452259 ( 18) CGCACACA 1 chr2R:25128173-25128293 ( 8) CGCACACA 1 chr2R:7158877-7158997 ( 14) CCCACACG 1 chr3L:7953547-7953667 ( 89) CACACAAG 1 chr2L:497861-497981 ( 11) CAAACACG 1 chr3R:28580134-28580254 ( 91) CAAACACG 1 chrX:18910495-18910615 ( 1) CACACAAA 1 chr3R:9028796-9028916 ( 7) CACACAAA 1 chr2L:9456244-9456364 ( 100) CACACAAA 1 chr2L:164265-164385 ( 75) CAAACACA 1 chr2R:17826004-17826124 ( 98) CACAGACG 1 chr3L:7934914-7935034 ( 7) CACAGACG 1 chr2R:6517202-6517322 ( 53) CGCACACC 1 chr3R:5203937-5204057 ( 57) CCCACACC 1 chrX:3043158-3043278 ( 35) CAAACACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0849 E= 4.9e-002 -1169 231 -1169 -1169 148 -174 -110 -1169 -132 212 -1169 -1169 172 -1169 -1169 -1169 -1169 222 -168 -1169 172 -1169 -1169 -1169 -132 212 -1169 -1169 68 -42 90 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 4.9e-002 0.000000 1.000000 0.000000 0.000000 0.848485 0.060606 0.090909 0.000000 0.121212 0.878788 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.060606 0.000000 1.000000 0.000000 0.000000 0.000000 0.121212 0.878788 0.000000 0.000000 0.484848 0.151515 0.363636 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACR MEME-3 regular expression -------------------------------------------------------------------------------- CACACAC[AG] -------------------------------------------------------------------------------- Time 19.08 secs. ******************************************************************************** ******************************************************************************** MOTIF YSGCCSCS MEME-4 width = 8 sites = 27 llr = 245 E-value = 4.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 56:a75a6 probability G :4a::5:4 matrix T 5:::3::: bits 2.4 * * 2.1 ** * 1.9 ** * 1.7 ** * Relative 1.4 *** *** Entropy 1.2 ******* (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCCGCC consensus CG TC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3386834-3386954 23 2.58e-06 TCAgccgccg ccgccgcc gttgccgcct chr2R:15249070-15249190 14 2.58e-06 CGAGAGAACG CCGCCGCC ATACAGCAGC chr3R:9922781-9922901 30 5.26e-06 AGCCAGCCCA CCGCCCCC TTGATCACCT chr2L:6534576-6534696 66 5.26e-06 GACTCCTCCA CCGCCCCC CCCCCCCCCA chr2R:8636105-8636225 30 5.26e-06 AATTAACTAT CCGCCCCC CTCGAAAGTA chr3L:11378576-11378696 63 1.16e-05 GTAGTCGCCT TCGCCGCC CAAATTATAT chr2L:19847794-19847914 44 1.16e-05 AAATGCCTTG CCGCCGCG CCTTTTGTTT chr2L:8346426-8346546 54 1.81e-05 TCTTCATCTG TCGCCCCC TCTCGCTCTG chrX:20640441-20640561 59 1.81e-05 TGCGATTTCC CCGCCCCG CCCACCAGAA chr2R:10542597-10542717 17 2.69e-05 CATGACTTCA TCGCCGCG CGTTTTCTCT chrX:17703404-17703524 47 2.69e-05 aatttaTTGG CGGCCCCC CACTATCGTC chr3L:16732575-16732695 8 2.69e-05 TCACTGC TCGCCGCG GAAAGGCAAC chrX:17358115-17358235 96 3.08e-05 GGCCTGCGAC TCGCCCCG CGAACGGAAA chr2R:19676169-19676289 88 3.69e-05 AAGGCCACAC TGGCCGCC CACAATTAAT chr2L:18948857-18948977 46 4.32e-05 CTTTCCTTTT TGGCCCCC AGCTGGTTTA chr3L:8452139-8452259 68 4.32e-05 TACTTCACGC TGGCCCCC GTCTCATGTG chr2L:5006243-5006363 85 4.68e-05 AATCGATCAC TGGCCGCG TGGGAGATGC chr2L:18647996-18648116 58 4.68e-05 ATGCGACTGG TGGCCGCG ACAGTTTGGC chr3R:4898052-4898172 24 5.43e-05 ACTCTTCTTC CCGCTGCC TCATTAGGCA chr2L:441475-441595 43 6.77e-05 AAGATTTATT TCGCTGCC CCTCGAAACC chr2R:24927076-24927196 2 7.74e-05 T CCGCTCCG CACGATTCAG chr2R:11045895-11046015 55 9.05e-05 GCTGGCAGGC CGGCTCCC CCTTCCCTGA chr3R:28596137-28596257 28 9.05e-05 CACCCCTTTT TCGCTGCG TATCCTGGTT chr2L:14444919-14445039 20 9.62e-05 AGTTTTCCTC TCGCTCCG GACAGACAAA chr3L:18402037-18402157 21 1.05e-04 GTATCTTTTT CGGCTGCG GCTTCGTTTC chr3R:6226197-6226317 8 1.05e-04 GGTTGAC TGGCTGCC AGTTCAATAA chr2L:7278282-7278402 75 1.53e-04 CAACTACAAG CGCCCCCC AGTCCCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3386834-3386954 2.6e-06 22_[+4]_90 chr2R:15249070-15249190 2.6e-06 13_[+4]_99 chr3R:9922781-9922901 5.3e-06 29_[+4]_83 chr2L:6534576-6534696 5.3e-06 65_[+4]_47 chr2R:8636105-8636225 5.3e-06 29_[+4]_83 chr3L:11378576-11378696 1.2e-05 62_[+4]_50 chr2L:19847794-19847914 1.2e-05 43_[+4]_69 chr2L:8346426-8346546 1.8e-05 53_[+4]_59 chrX:20640441-20640561 1.8e-05 58_[+4]_54 chr2R:10542597-10542717 2.7e-05 16_[+4]_96 chrX:17703404-17703524 2.7e-05 46_[+4]_66 chr3L:16732575-16732695 2.7e-05 7_[+4]_105 chrX:17358115-17358235 3.1e-05 95_[+4]_17 chr2R:19676169-19676289 3.7e-05 87_[+4]_25 chr2L:18948857-18948977 4.3e-05 45_[+4]_67 chr3L:8452139-8452259 4.3e-05 67_[+4]_45 chr2L:5006243-5006363 4.7e-05 84_[+4]_28 chr2L:18647996-18648116 4.7e-05 57_[+4]_55 chr3R:4898052-4898172 5.4e-05 23_[+4]_89 chr2L:441475-441595 6.8e-05 42_[+4]_70 chr2R:24927076-24927196 7.7e-05 1_[+4]_111 chr2R:11045895-11046015 9e-05 54_[+4]_58 chr3R:28596137-28596257 9e-05 27_[+4]_85 chr2L:14444919-14445039 9.6e-05 19_[+4]_93 chr3L:18402037-18402157 0.00011 20_[+4]_92 chr3R:6226197-6226317 0.00011 7_[+4]_105 chr2L:7278282-7278402 0.00015 74_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSGCCSCS width=8 seqs=27 chr3L:3386834-3386954 ( 23) CCGCCGCC 1 chr2R:15249070-15249190 ( 14) CCGCCGCC 1 chr3R:9922781-9922901 ( 30) CCGCCCCC 1 chr2L:6534576-6534696 ( 66) CCGCCCCC 1 chr2R:8636105-8636225 ( 30) CCGCCCCC 1 chr3L:11378576-11378696 ( 63) TCGCCGCC 1 chr2L:19847794-19847914 ( 44) CCGCCGCG 1 chr2L:8346426-8346546 ( 54) TCGCCCCC 1 chrX:20640441-20640561 ( 59) CCGCCCCG 1 chr2R:10542597-10542717 ( 17) TCGCCGCG 1 chrX:17703404-17703524 ( 47) CGGCCCCC 1 chr3L:16732575-16732695 ( 8) TCGCCGCG 1 chrX:17358115-17358235 ( 96) TCGCCCCG 1 chr2R:19676169-19676289 ( 88) TGGCCGCC 1 chr2L:18948857-18948977 ( 46) TGGCCCCC 1 chr3L:8452139-8452259 ( 68) TGGCCCCC 1 chr2L:5006243-5006363 ( 85) TGGCCGCG 1 chr2L:18647996-18648116 ( 58) TGGCCGCG 1 chr3R:4898052-4898172 ( 24) CCGCTGCC 1 chr2L:441475-441595 ( 43) TCGCTGCC 1 chr2R:24927076-24927196 ( 2) CCGCTCCG 1 chr2R:11045895-11046015 ( 55) CGGCTCCC 1 chr3R:28596137-28596257 ( 28) TCGCTGCG 1 chr2L:14444919-14445039 ( 20) TCGCTCCG 1 chr3L:18402037-18402157 ( 21) CGGCTGCG 1 chr3R:6226197-6226317 ( 8) TGGCTGCC 1 chr2L:7278282-7278402 ( 75) CGCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 4.4e+000 -1140 125 -1140 79 -1140 164 93 -1140 -1140 -245 230 -1140 -1140 231 -1140 -1140 -1140 180 -1140 -2 -1140 125 141 -1140 -1140 231 -1140 -1140 -1140 155 106 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.4e+000 0.000000 0.481481 0.000000 0.518519 0.000000 0.629630 0.370370 0.000000 0.000000 0.037037 0.962963 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.703704 0.000000 0.296296 0.000000 0.481481 0.518519 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.592593 0.407407 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCCSCS MEME-4 regular expression -------------------------------------------------------------------------------- [TC][CG]GC[CT][GC]C[CG] -------------------------------------------------------------------------------- Time 24.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGGGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G aaa:aaaa matrix T :::a:::: bits 2.4 *** **** 2.1 *** **** 1.9 *** **** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5829251-5829371 65 3.22e-06 GCCATTGTGC GGGTGGGG AAATCAATTT chr3L:22129947-22130067 79 3.22e-06 ATGGCCAGGG GGGTGGGG gcgagagcga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5829251-5829371 3.2e-06 64_[+5]_48 chr3L:22129947-22130067 3.2e-06 78_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGGGG width=8 seqs=2 chr3L:5829251-5829371 ( 65) GGGTGGGG 1 chr3L:22129947-22130067 ( 79) GGGTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.2e+004 -765 -765 235 -765 -765 -765 235 -765 -765 -765 235 -765 -765 -765 -765 173 -765 -765 235 -765 -765 -765 235 -765 -765 -765 235 -765 -765 -765 235 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGTGGGG -------------------------------------------------------------------------------- Time 30.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16279363-16279483 1.75e-01 103_[+1(6.83e-05)]_9 chr2R:22543629-22543749 1.86e-01 120 chr2L:14258730-14258850 1.80e-01 120 chr2L:14247209-14247329 7.54e-02 120 chr3L:3327078-3327198 8.49e-01 120 chr2R:12553335-12553455 3.11e-01 120 chr3R:25457467-25457587 1.40e-01 108_[+1(6.83e-05)]_4 chr3R:28860841-28860961 5.16e-01 120 chr2R:16090091-16090211 4.07e-01 120 chr3L:22237825-22237945 5.49e-03 104_[+1(6.83e-05)]_8 chr3R:16030581-16030701 1.91e-01 24_[+1(6.83e-05)]_88 chr2R:12012322-12012442 1.58e-02 46_[+1(6.83e-05)]_66 chr3R:12274941-12275061 2.84e-01 120 chr2L:18647996-18648116 2.50e-03 57_[+4(4.68e-05)]_55 chr2L:17228257-17228377 1.06e-01 120 chr3R:24891410-24891530 8.05e-01 120 chr2L:17768730-17768850 2.57e-02 78_[+1(6.83e-05)]_34 chr3L:2852471-2852591 6.93e-01 120 chr2L:4055020-4055140 2.26e-01 120 chr2L:19847794-19847914 1.44e-03 43_[+4(1.16e-05)]_20_[+1(6.83e-05)]_\ 41 chr3R:16519372-16519492 2.71e-01 76_[+1(6.83e-05)]_36 chr3R:20254857-20254977 4.68e-01 120 chr3L:6516240-6516360 1.28e-02 120 chr3R:28580134-28580254 9.67e-03 65_[+1(6.83e-05)]_17_[+3(8.97e-05)]_\ 22 chr3L:15702343-15702463 6.50e-02 120 chr2L:8888349-8888469 1.99e-02 8_[+1(6.83e-05)]_33_[+1(6.83e-05)]_\ 63 chr3R:23042860-23042980 5.61e-02 120 chrX:17358115-17358235 3.27e-02 95_[+4(3.08e-05)]_17 chrX:17511233-17511353 5.95e-01 120 chr3L:20924450-20924570 4.00e-01 120 chr2L:164265-164385 2.49e-01 120 chr3L:20952985-20953105 2.38e-01 120 chr2R:14951094-14951214 3.54e-01 120 chr3R:4916938-4917058 4.49e-01 120 chr2R:13569359-13569479 7.16e-02 21_[+1(6.83e-05)]_91 chr3R:6226197-6226317 6.48e-02 120 chrX:8525031-8525151 1.16e-02 7_[+1(6.83e-05)]_105 chr3L:12036779-12036899 3.36e-01 120 chr3L:5855601-5855721 2.47e-02 120 chr3R:19015318-19015438 1.67e-01 120 chr3L:18402037-18402157 2.83e-02 120 chr3R:13792554-13792674 3.52e-02 81_[+2(7.30e-05)]_31 chrX:708461-708581 1.37e-02 31_[+1(6.83e-05)]_81 chr2R:15249070-15249190 8.48e-03 13_[+4(2.58e-06)]_99 chr3R:9359557-9359677 2.05e-01 120 chr3L:9469948-9470068 1.11e-04 1_[+2(4.41e-06)]_111 chr2R:14003141-14003261 5.08e-02 63_[+1(6.83e-05)]_49 chr3L:19154029-19154149 2.92e-03 22_[+3(3.24e-05)]_2_[+3(9.03e-06)]_\ 8_[+3(9.03e-06)]_4_[+1(6.83e-05)]_52 chr3L:6697193-6697313 3.26e-01 120 chr3R:9208805-9208925 3.02e-04 45_[+3(2.31e-05)]_67 chr2R:6517202-6517322 1.94e-02 120 chr2L:9445925-9446045 7.93e-04 8_[+2(2.24e-06)]_104 chr3L:14645332-14645452 3.45e-01 120 chr3L:3386834-3386954 3.25e-03 16_[+4(2.58e-06)]_96 chr3L:5619431-5619551 5.37e-05 41_[+2(4.41e-06)]_71 chr3L:16732575-16732695 5.62e-04 7_[+4(2.69e-05)]_65_[+1(6.83e-05)]_\ 32 chrX:5212306-5212426 1.15e-02 14_[+1(6.83e-05)]_98 chr2R:8636105-8636225 2.71e-02 29_[+4(5.26e-06)]_83 chr3L:15639234-15639354 5.63e-01 120 chr3L:13585360-13585480 1.62e-01 8_[+1(6.83e-05)]_104 chr2L:6236659-6236779 2.32e-01 120 chr2R:7026673-7026793 9.00e-01 120 chr2R:19796101-19796221 4.68e-01 120 chr2L:14668369-14668489 3.86e-01 120 chr3L:13643346-13643466 4.10e-02 78_[+3(3.24e-05)]_34 chrX:17506417-17506537 1.84e-01 120 chr3R:8981334-8981454 7.77e-01 120 chr3L:11378576-11378696 1.33e-03 13_[+4(4.32e-05)]_41_[+4(1.16e-05)]_\ 50 chr3R:10590298-10590418 5.00e-02 120 chr2L:4051836-4051956 5.58e-01 120 chr2L:8289441-8289561 2.31e-01 120 chr3R:22196776-22196896 6.27e-02 51_[+1(6.83e-05)]_61 chr3L:4166014-4166134 3.49e-03 108_[+2(1.25e-05)]_4 chr2L:7278282-7278402 1.29e-01 120 chr3L:19202515-19202635 4.70e-01 120 chr3R:10299901-10300021 7.19e-01 120 chr2R:10312269-10312389 4.29e-02 83_[+2(7.30e-05)]_29 chr3R:9246500-9246620 4.72e-01 120 chr2R:21560032-21560152 8.93e-01 120 chr3L:6854100-6854220 2.97e-02 120 chr3R:30566639-30566759 2.89e-01 120 chr2L:3006326-3006446 1.34e-01 120 chrX:17175243-17175363 6.74e-01 120 chr2L:14450000-14450120 6.80e-01 120 chr3L:19228493-19228613 1.13e-02 120 chr2L:1425962-1426082 7.41e-07 17_[+2(2.24e-06)]_2_[+3(2.31e-05)]_\ 85 chr3R:4898052-4898172 3.07e-02 23_[+4(5.43e-05)]_89 chr3L:11224800-11224920 3.41e-01 120 chr2L:17586975-17587095 6.15e-02 120 chr2R:11721568-11721688 8.06e-01 120 chr2R:20028286-20028406 3.90e-03 18_[+3(2.31e-05)]_94 chr3L:15203723-15203843 9.48e-02 120 chr2L:3830588-3830708 2.04e-02 120 chr2L:2453956-2454076 6.06e-01 120 chr3L:7934914-7935034 5.89e-03 120 chr2R:14722831-14722951 1.57e-01 120 chr2R:20155526-20155646 2.65e-02 10_[+1(6.83e-05)]_102 chr2L:11187279-11187399 1.85e-01 120 chr3R:26804281-26804401 1.53e-01 120 chr3R:15582665-15582785 2.30e-01 120 chr2L:497861-497981 8.64e-02 10_[+3(8.97e-05)]_102 chr2R:19938084-19938204 3.39e-02 120 chr3R:8916068-8916188 7.88e-01 120 chr2R:15750276-15750396 9.63e-02 120 chr3L:19037182-19037302 9.62e-01 120 chr3L:10972536-10972656 2.14e-01 120 chr3L:15319943-15320063 4.91e-01 120 chr3R:8921495-8921615 1.20e-02 46_[+3(9.03e-06)]_66 chr2R:15353074-15353194 9.89e-02 24_[+1(6.83e-05)]_88 chr3R:21413963-21414083 8.28e-02 94_[+1(6.83e-05)]_18 chr2L:8098587-8098707 1.28e-02 36_[+3(2.31e-05)]_21_[+1(6.83e-05)]_\ 47 chr3R:21344565-21344685 4.10e-05 18_[+3(2.31e-05)]_79_[+5(1.07e-05)]_\ 7 chr2L:14213121-14213241 4.75e-02 120 chr3L:12643914-12644034 4.05e-01 120 chr2L:18552357-18552477 7.43e-02 39_[+1(6.83e-05)]_73 chr3R:18050144-18050264 2.38e-02 120 chr3R:13929697-13929817 2.19e-01 43_[+1(6.83e-05)]_69 chr3L:8065741-8065861 5.85e-01 120 chr2L:19160890-19161010 7.26e-01 120 chr3R:28596137-28596257 6.12e-02 27_[+4(9.05e-05)]_85 chr2L:6534576-6534696 5.92e-04 65_[+4(5.26e-06)]_6_[+3(8.97e-05)]_\ 4_[+3(9.03e-06)]_21 chrX:20640441-20640561 3.52e-04 58_[+4(1.81e-05)]_28_[+1(6.83e-05)]_\ 18 chr2L:3417853-3417973 1.38e-01 120 chr2L:9456244-9456364 5.64e-02 120 chr2L:12615350-12615470 6.66e-01 120 chr3L:15531641-15531761 2.08e-01 120 chr3L:8073558-8073678 6.32e-02 23_[+1(6.83e-05)]_89 chr3L:7953547-7953667 6.55e-02 88_[+3(8.97e-05)]_24 chrX:16596384-16596504 3.50e-02 99_[+2(5.34e-05)]_13 chr3R:26802865-26802985 1.24e-01 120 chr3L:18422035-18422155 7.09e-01 120 chr2R:11930269-11930389 3.67e-01 120 chr2L:3418052-3418172 7.28e-01 120 chr2R:21480446-21480566 7.12e-03 37_[+1(6.83e-05)]_75 chr2R:15306156-15306276 5.03e-01 120 chr3R:20912777-20912897 2.18e-01 25_[+1(6.83e-05)]_87 chr3R:17400265-17400385 1.10e-01 69_[+1(6.83e-05)]_43 chr2R:21194231-21194351 2.26e-01 120 chr2L:2474024-2474144 2.22e-04 12_[+3(9.03e-06)]_67_[+1(6.83e-05)]_\ 25 chrX:17162718-17162838 2.89e-03 32_[+1(6.83e-05)]_80 chr2L:14428862-14428982 5.89e-01 120 chr2L:3648594-3648714 7.36e-01 120 chr3R:14005904-14006024 2.90e-02 55_[+3(3.24e-05)]_57 chr3R:12398147-12398267 2.17e-01 55_[+1(6.83e-05)]_57 chr2R:18335903-18336023 5.19e-01 120 chr3R:5203937-5204057 3.51e-01 120 chr2L:4091922-4092042 9.26e-02 120 chr3L:12646231-12646351 3.26e-01 120 chr3R:26023852-26023972 4.42e-01 120 chr2R:11379712-11379832 4.89e-02 120 chr3R:9922781-9922901 2.93e-03 29_[+4(5.26e-06)]_83 chr3R:5623701-5623821 1.40e-02 3_[+1(6.83e-05)]_109 chrX:3150699-3150819 7.14e-04 [+3(2.31e-05)]_112 chr2R:8177309-8177429 9.92e-01 120 chr3L:12714805-12714925 1.29e-01 120 chr3R:20560760-20560880 4.20e-01 120 chr3L:18217034-18217154 1.02e-01 120 chrX:5618736-5618856 4.84e-01 120 chr3L:22129947-22130067 2.33e-04 70_[+2(3.93e-05)]_[+5(3.22e-06)]_34 chr3R:31354114-31354234 2.84e-02 120 chr2R:7422464-7422584 4.75e-02 120 chr3L:4999462-4999582 1.23e-02 120 chr3L:12088213-12088333 8.90e-02 120 chr2R:21530705-21530825 1.68e-01 120 chr3R:14566988-14567108 4.52e-01 120 chr2L:14444919-14445039 4.95e-02 19_[+4(9.62e-05)]_93 chr2L:5006243-5006363 4.26e-02 84_[+4(4.68e-05)]_28 chr3L:5829251-5829371 2.38e-04 64_[+5(3.22e-06)]_48 chr3R:11645001-11645121 6.06e-02 16_[+1(6.83e-05)]_96 chr2R:15915283-15915403 3.25e-03 66_[+1(6.83e-05)]_46 chr3L:4263377-4263497 3.23e-02 16_[+1(6.83e-05)]_96 chr3L:11308816-11308936 2.42e-01 120 chr2L:18303041-18303161 2.19e-01 120 chr3L:14575700-14575820 1.97e-01 120 chr3L:1117395-1117515 8.56e-01 120 chr2R:11688632-11688752 3.92e-01 96_[+1(6.83e-05)]_16 chr3R:9918212-9918332 1.92e-01 120 chr2L:441475-441595 4.55e-02 42_[+4(6.77e-05)]_70 chr2L:12589280-12589400 7.26e-01 120 chr2R:24927076-24927196 1.87e-04 1_[+4(7.74e-05)]_24_[+1(6.83e-05)]_\ 45_[+3(9.03e-06)]_26 chr2R:19676169-19676289 7.79e-05 87_[+4(3.69e-05)]_5_[+1(6.83e-05)]_\ 12 chr2R:17826004-17826124 1.54e-01 120 chrX:17703404-17703524 8.66e-03 46_[+4(2.69e-05)]_8_[+4(7.74e-05)]_\ 50 chr3R:22634975-22635095 9.89e-01 120 chr3L:15021156-15021276 1.59e-01 120 chr2R:10314711-10314831 1.54e-03 76_[+3(9.03e-06)]_36 chr3L:19174749-19174869 1.66e-01 120 chr3L:6787535-6787655 2.69e-02 120 chr2L:6658190-6658310 4.31e-01 120 chr2R:25128173-25128293 1.68e-02 7_[+3(4.73e-05)]_105 chr2L:19313597-19313717 3.03e-03 120 chr3L:12678509-12678629 8.08e-03 44_[+2(9.06e-06)]_68 chr2R:11091785-11091905 5.28e-01 120 chr3R:26801865-26801985 2.18e-01 120 chr3L:8452139-8452259 1.22e-04 17_[+3(4.73e-05)]_42_[+4(4.32e-05)]_\ 45 chr2L:8346426-8346546 6.79e-02 53_[+4(1.81e-05)]_59 chr3L:14655920-14656040 4.22e-01 120 chr3R:10528271-10528391 1.80e-01 120 chr3R:29544550-29544670 5.26e-01 120 chr2R:7158877-7158997 5.82e-03 13_[+3(5.33e-05)]_99 chrX:3043158-3043278 8.28e-02 120 chr3R:9512464-9512584 3.14e-03 7_[+1(6.83e-05)]_87_[+3(9.03e-06)]_\ 10 chr2R:10556398-10556518 2.14e-01 120 chr2R:8635525-8635645 1.42e-01 120 chr3L:13105962-13106082 4.21e-02 61_[+3(2.31e-05)]_51 chr3L:2237630-2237750 8.32e-03 30_[+2(9.06e-06)]_82 chr3L:16569589-16569709 6.35e-01 120 chr3L:15200722-15200842 2.07e-03 39_[+3(2.31e-05)]_73 chr2R:20999242-20999362 1.80e-01 120 chr3L:19164480-19164600 2.36e-01 120 chr2L:5418158-5418278 4.07e-02 120 chr3L:21643326-21643446 2.67e-01 120 chr3R:24234860-24234980 5.03e-01 120 chr2R:11045895-11046015 8.53e-04 54_[+4(9.05e-05)]_28_[+1(6.83e-05)]_\ 22 chr2R:22237199-22237319 6.27e-01 120 chr2R:22700226-22700346 2.22e-02 2_[+3(4.73e-05)]_20_[+3(3.24e-05)]_\ [+3(2.31e-05)]_74 chr2L:2860124-2860244 6.36e-01 120 chr3L:4542678-4542798 4.55e-01 120 chr2L:20934860-20934980 4.69e-01 120 chr2R:19411576-19411696 7.18e-01 120 chr2L:17381611-17381731 2.59e-01 120 chr2L:10543152-10543272 1.32e-02 120 chr3R:9028796-9028916 1.08e-02 120 chr3L:161973-162093 6.57e-03 120 chr2R:15682631-15682751 2.27e-01 120 chr3R:15653055-15653175 1.23e-02 120 chr2L:14284668-14284788 3.92e-01 120 chr3L:4440327-4440447 3.51e-01 120 chr2R:14001919-14002039 2.29e-01 120 chr3L:18015090-18015210 9.79e-01 120 chr2L:18948857-18948977 1.24e-01 45_[+4(4.32e-05)]_67 chr2L:14618995-14619115 8.27e-01 120 chr3R:8665207-8665327 4.78e-01 120 chr2R:9551738-9551858 2.30e-01 120 chr2R:6645716-6645836 1.76e-01 120 chr2R:12914858-12914978 6.26e-01 120 chr2L:8296439-8296559 1.75e-02 120 chr3R:15673513-15673633 1.49e-02 120 chrX:17509970-17510090 4.15e-02 120 chr2R:12468030-12468150 1.59e-01 120 chr3L:22399895-22400015 4.07e-04 87_[+2(2.24e-06)]_25 chrX:8106553-8106673 1.34e-02 120 chr3R:13957095-13957215 1.05e-01 45_[+1(6.83e-05)]_32_[+1(6.83e-05)]_\ 27 chr3L:6309851-6309971 1.64e-01 120 chr2R:25232874-25232994 6.40e-01 120 chr2L:14580843-14580963 3.36e-02 120 chr3L:12298196-12298316 2.21e-03 91_[+1(6.83e-05)]_21 chr2L:3730032-3730152 6.58e-01 120 chr2R:10542597-10542717 1.12e-02 16_[+4(2.69e-05)]_96 chrX:18910495-18910615 6.34e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************