******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7556.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16215023-16215143 1.0000 120 chr3L:18030112-18030232 1.0000 120 chr3L:17447971-17448091 1.0000 120 chr3L:11863721-11863841 1.0000 120 chr2R:18374523-18374643 1.0000 120 chr3R:16213918-16214038 1.0000 120 chr3L:10827491-10827611 1.0000 120 chr2R:15155081-15155201 1.0000 120 chr3L:19231282-19231402 1.0000 120 chr2L:19019227-19019347 1.0000 120 chr2R:22508168-22508288 1.0000 120 chr3L:16870816-16870936 1.0000 120 chr3L:11467171-11467291 1.0000 120 chr2R:6589468-6589588 1.0000 120 chr3L:14847513-14847633 1.0000 120 chr3L:15034491-15034611 1.0000 120 chr3R:13804003-13804123 1.0000 120 chr3R:28959229-28959349 1.0000 120 chrX:18125680-18125800 1.0000 120 chr2L:9864440-9864560 1.0000 120 chr3R:6414859-6414979 1.0000 120 chr3L:11556793-11556913 1.0000 120 chr3L:9466714-9466834 1.0000 120 chr2R:18374725-18374845 1.0000 120 chr3L:21859771-21859891 1.0000 120 chr3R:13804202-13804322 1.0000 120 chr2R:22053785-22053905 1.0000 120 chr3L:19087989-19088109 1.0000 120 chr3R:21188082-21188202 1.0000 120 chr2R:11176379-11176499 1.0000 120 chr3L:17948834-17948954 1.0000 120 chr3L:19251733-19251853 1.0000 120 chr2L:19019426-19019546 1.0000 120 chr2R:13015369-13015489 1.0000 120 chr2L:2374191-2374311 1.0000 120 chrX:13208235-13208355 1.0000 120 chr2L:17558244-17558364 1.0000 120 chr3R:20829582-20829702 1.0000 120 chr2R:8860057-8860177 1.0000 120 chr3R:15366969-15367089 1.0000 120 chr3L:16840561-16840681 1.0000 120 chrX:12547343-12547463 1.0000 120 chr3L:4000858-4000978 1.0000 120 chrX:9120072-9120192 1.0000 120 chr3L:9125875-9125995 1.0000 120 chrX:3206320-3206440 1.0000 120 chr2R:24139223-24139343 1.0000 120 chr3R:14875740-14875860 1.0000 120 chr3L:14328440-14328560 1.0000 120 chr3R:17049080-17049200 1.0000 120 chr3L:11278931-11279051 1.0000 120 chr2L:20808451-20808571 1.0000 120 chrX:19248415-19248535 1.0000 120 chr3R:8577766-8577886 1.0000 120 chr2R:14698959-14699079 1.0000 120 chr3L:10818400-10818520 1.0000 120 chr3L:16148005-16148125 1.0000 120 chr3R:24580605-24580725 1.0000 120 chr2L:12567406-12567526 1.0000 120 chr3R:20950178-20950298 1.0000 120 chr3L:11336558-11336678 1.0000 120 chr2L:11248970-11249090 1.0000 120 chr2R:11758328-11758448 1.0000 120 chrX:9431555-9431675 1.0000 120 chr3L:4010200-4010320 1.0000 120 chr3L:7314304-7314424 1.0000 120 chr3R:26333408-26333528 1.0000 120 chr3R:16215222-16215342 1.0000 120 chrX:7995216-7995336 1.0000 120 chr2L:19138423-19138543 1.0000 120 chr3R:21809104-21809224 1.0000 120 chr3L:15275588-15275708 1.0000 120 chr3R:6664785-6664905 1.0000 120 chr2L:16869118-16869238 1.0000 120 chr3L:16840760-16840880 1.0000 120 chr2L:3755291-3755411 1.0000 120 chr3L:7592269-7592389 1.0000 120 chr3L:9739773-9739893 1.0000 120 chr3L:6797568-6797688 1.0000 120 chrX:17712596-17712716 1.0000 120 chr3L:4353716-4353836 1.0000 120 chr3R:16242040-16242160 1.0000 120 chr3R:24093572-24093692 1.0000 120 chr2L:12156938-12157058 1.0000 120 chr3R:24467417-24467537 1.0000 120 chr2R:22789437-22789557 1.0000 120 chr3L:6885824-6885944 1.0000 120 chr3L:2913438-2913558 1.0000 120 chr2L:1048502-1048622 1.0000 120 chr3R:11081844-11081964 1.0000 120 chr3L:9695730-9695850 1.0000 120 chr2L:7931383-7931503 1.0000 120 chr3R:12543094-12543214 1.0000 120 chr2R:16916249-16916369 1.0000 120 chrX:5970354-5970474 1.0000 120 chr2L:12415871-12415991 1.0000 120 chrX:15297339-15297459 1.0000 120 chr2R:11176586-11176706 1.0000 120 chr3R:16213018-16213138 1.0000 120 chr2L:17588733-17588853 1.0000 120 chr3L:9126083-9126203 1.0000 120 chr2R:12991292-12991412 1.0000 120 chrX:9615585-9615705 1.0000 120 chr2R:8051542-8051662 1.0000 120 chr2R:23656753-23656873 1.0000 120 chrX:16580060-16580180 1.0000 120 chr3R:5413123-5413243 1.0000 120 chrX:9520310-9520430 1.0000 120 chrX:16086355-16086475 1.0000 120 chr2R:14136883-14137003 1.0000 120 chr3R:6664985-6665105 1.0000 120 chr2L:3507610-3507730 1.0000 120 chr2L:1619341-1619461 1.0000 120 chr2L:14141368-14141488 1.0000 120 chr3L:16129035-16129155 1.0000 120 chrX:10628983-10629103 1.0000 120 chr3L:16871026-16871146 1.0000 120 chrX:19453270-19453390 1.0000 120 chr3L:18795562-18795682 1.0000 120 chr3R:21188281-21188401 1.0000 120 chr2R:18771134-18771254 1.0000 120 chrX:12937862-12937982 1.0000 120 chr2L:6088913-6089033 1.0000 120 chr3L:21321912-21322032 1.0000 120 chr3L:908658-908778 1.0000 120 chr3R:18311339-18311459 1.0000 120 chrX:20644096-20644216 1.0000 120 chr2L:19121249-19121369 1.0000 120 chr2L:7871879-7871999 1.0000 120 chr2L:13876837-13876957 1.0000 120 chr2L:19463546-19463666 1.0000 120 chr3L:6085274-6085394 1.0000 120 chr2R:24292808-24292928 1.0000 120 chrX:12724876-12724996 1.0000 120 chr2R:10194954-10195074 1.0000 120 chr3R:26117850-26117970 1.0000 120 chr3R:14351507-14351627 1.0000 120 chr3R:25184184-25184304 1.0000 120 chrX:11081344-11081464 1.0000 120 chr3R:15128967-15129087 1.0000 120 chr2R:10395576-10395696 1.0000 120 chr3R:25168412-25168532 1.0000 120 chr3R:17526197-17526317 1.0000 120 chr2R:11232677-11232797 1.0000 120 chr3R:6760910-6761030 1.0000 120 chr3R:29651569-29651689 1.0000 120 chr2L:10760755-10760875 1.0000 120 chrX:12925923-12926043 1.0000 120 chr2R:10681351-10681471 1.0000 120 chrX:19225100-19225220 1.0000 120 chr2R:15835719-15835839 1.0000 120 chr2L:19373932-19374052 1.0000 120 chr2R:14305293-14305413 1.0000 120 chr3R:26494364-26494484 1.0000 120 chr2L:13461055-13461175 1.0000 120 chr3L:3970499-3970619 1.0000 120 chr2L:17588933-17589053 1.0000 120 chr2L:17747269-17747389 1.0000 120 chr2L:1043685-1043805 1.0000 120 chr3R:23067527-23067647 1.0000 120 chr2L:14123748-14123868 1.0000 120 chr3L:19263483-19263603 1.0000 120 chr3L:16045407-16045527 1.0000 120 chr2R:8002262-8002382 1.0000 120 chrX:15297121-15297241 1.0000 120 chr3L:16054175-16054295 1.0000 120 chr2R:12218896-12219016 1.0000 120 chr2R:11601979-11602099 1.0000 120 chr3R:16476580-16476700 1.0000 120 chr3R:7646412-7646532 1.0000 120 chrX:20434688-20434808 1.0000 120 chrX:17782142-17782262 1.0000 120 chr2R:13008228-13008348 1.0000 120 chrX:10184767-10184887 1.0000 120 chr2R:16096950-16097070 1.0000 120 chr3L:2845405-2845525 1.0000 120 chr3R:10140017-10140137 1.0000 120 chr3L:13903470-13903590 1.0000 120 chr2R:15835518-15835638 1.0000 120 chr3L:17310626-17310746 1.0000 120 chr3L:20276752-20276872 1.0000 120 chrX:19348902-19349022 1.0000 120 chr2L:5445996-5446116 1.0000 120 chr2R:15034896-15035016 1.0000 120 chrX:13320918-13321038 1.0000 120 chr3R:15250622-15250742 1.0000 120 chr2R:8045066-8045186 1.0000 120 chr2R:9388643-9388763 1.0000 120 chr3R:7821739-7821859 1.0000 120 chr3R:27988693-27988813 1.0000 120 chrX:10573675-10573795 1.0000 120 chr3R:21206414-21206534 1.0000 120 chr3L:14613888-14614008 1.0000 120 chr2L:19930229-19930349 1.0000 120 chr3L:14172624-14172744 1.0000 120 chr2L:8080770-8080890 1.0000 120 chr3L:734026-734146 1.0000 120 chr2R:21706588-21706708 1.0000 120 chr2R:9684090-9684210 1.0000 120 chr2L:1207574-1207694 1.0000 120 chr3L:5182339-5182459 1.0000 120 chr3R:9494411-9494531 1.0000 120 chr3L:11291588-11291708 1.0000 120 chr2L:6874667-6874787 1.0000 120 chrX:3289066-3289186 1.0000 120 chr2R:12547680-12547800 1.0000 120 chr3R:13799672-13799792 1.0000 120 chr2L:7957183-7957303 1.0000 120 chr3R:17680980-17681100 1.0000 120 chr3R:15129169-15129289 1.0000 120 chrX:10363021-10363141 1.0000 120 chr3R:16986963-16987083 1.0000 120 chr3L:3411873-3411993 1.0000 120 chr3L:8951148-8951268 1.0000 120 chrX:21375736-21375856 1.0000 120 chr2L:16647859-16647979 1.0000 120 chr3R:14278286-14278406 1.0000 120 chr2L:6830438-6830558 1.0000 120 chrX:9899908-9900028 1.0000 120 chr3L:5630254-5630374 1.0000 120 chr3L:19073974-19074094 1.0000 120 chrX:13789098-13789218 1.0000 120 chr3R:25880526-25880646 1.0000 120 chr3R:29581610-29581730 1.0000 120 chr2R:12772774-12772894 1.0000 120 chr3L:18402691-18402811 1.0000 120 chr3R:18197702-18197822 1.0000 120 chrX:18900058-18900178 1.0000 120 chr3L:3873222-3873342 1.0000 120 chr2R:21706388-21706508 1.0000 120 chr2R:8734578-8734698 1.0000 120 chr3L:10893441-10893561 1.0000 120 chrX:2011732-2011852 1.0000 120 chr3L:11398763-11398883 1.0000 120 chrX:20631263-20631383 1.0000 120 chrX:9202306-9202426 1.0000 120 chr3R:6368617-6368737 1.0000 120 chr3L:16172917-16173037 1.0000 120 chr3L:7155752-7155872 1.0000 120 chr2L:8746425-8746545 1.0000 120 chr2L:14021274-14021394 1.0000 120 chr3R:24574234-24574354 1.0000 120 chr3R:5861714-5861834 1.0000 120 chr3R:22878561-22878681 1.0000 120 chr2L:8602709-8602829 1.0000 120 chr2L:16690120-16690240 1.0000 120 chrX:9135233-9135353 1.0000 120 chr2L:15442303-15442423 1.0000 120 chr3R:16210008-16210128 1.0000 120 chr3L:3437263-3437383 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7556/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7556.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.364 C 0.135 G 0.135 T 0.366 Background letter frequencies (from file dataset with add-one prior applied): A 0.364 C 0.135 G 0.135 T 0.366 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSCCGCYY MEME-1 width = 8 sites = 7 llr = 85 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::11: pos.-specific C :6aa:946 probability G a4::a::: matrix T ::::::44 bits 2.9 * *** 2.6 * *** 2.3 * *** 2.0 ****** Relative 1.7 ****** Entropy 1.4 ****** (17.5 bits) 1.2 ****** * 0.9 ****** * 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCCCGCCC consensus G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25880526-25880646 90 5.20e-07 ATGTTTTTAA GCCCGCTC ATTAAAAAAA chrX:3206320-3206440 19 5.20e-07 ACTTTTCTCA GCCCGCTC TGGTCCTTCA chr3R:29651569-29651689 2 1.42e-06 C GGCCGCCT GAATCTGAAC chr3L:14847513-14847633 6 1.42e-06 TTATA GGCCGCCT ATTTAAAAGT chr2R:8860057-8860177 76 1.71e-06 TACCGTAATG GCCCGCAC CCAACGAGAT chr3L:19263483-19263603 28 2.82e-06 GTTGTGGTGC GCCCGCTT TTCGGCCTTG chr3L:9126083-9126203 54 4.23e-06 GTTGGGTTCT GGCCGACC AGCCAACTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25880526-25880646 5.2e-07 89_[+1]_23 chrX:3206320-3206440 5.2e-07 18_[+1]_94 chr3R:29651569-29651689 1.4e-06 1_[+1]_111 chr3L:14847513-14847633 1.4e-06 5_[+1]_107 chr2R:8860057-8860177 1.7e-06 75_[+1]_37 chr3L:19263483-19263603 2.8e-06 27_[+1]_85 chr3L:9126083-9126203 4.2e-06 53_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCCGCYY width=8 seqs=7 chr3R:25880526-25880646 ( 90) GCCCGCTC 1 chrX:3206320-3206440 ( 19) GCCCGCTC 1 chr3R:29651569-29651689 ( 2) GGCCGCCT 1 chr3L:14847513-14847633 ( 6) GGCCGCCT 1 chr2R:8860057-8860177 ( 76) GCCCGCAC 1 chr3L:19263483-19263603 ( 28) GCCCGCTT 1 chr3L:9126083-9126203 ( 54) GGCCGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 1.9e+002 -945 -945 289 -945 -945 209 167 -945 -945 289 -945 -945 -945 289 -945 -945 -945 -945 289 -945 -135 267 -945 -945 -135 167 -945 23 -945 209 -945 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.428571 0.000000 0.428571 0.000000 0.571429 0.000000 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCGCYY MEME-1 regular expression -------------------------------------------------------------------------------- G[CG]CCGC[CT][CT] -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGSTGS MEME-2 width = 8 sites = 18 llr = 178 E-value = 8.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::2:1 pos.-specific C :1::4::4 probability G :98a5285 matrix T a:2:172: bits 2.9 * 2.6 * * 2.3 * * 2.0 * * * Relative 1.7 *** * Entropy 1.4 ***** ** (14.3 bits) 1.2 ***** ** 0.9 ***** ** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGGGGTGG consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21706588-21706708 86 2.43e-06 CAAAACCATT TGGGGTGC CTAAAAGGGG chr3L:16840561-16840681 51 2.43e-06 GGTTTTTATT TGGGGTGC TTATCATTGA chrX:21375736-21375856 12 3.54e-06 GTGGGGTTTG TGGGGGGG CAAAAAACAC chr2R:15034896-15035016 26 4.14e-06 TAGTCGAAGC TGGGCGGG AATTATCTAT chr3L:9126083-9126203 6 4.14e-06 TTTTT TGGGGGGC TTCTAGTTAT chr2L:16690120-16690240 82 6.86e-06 AACAGCACAA TGGGCAGG TTGAGGATAT chr3L:16129035-16129155 9 6.86e-06 ACAGACGC TGGGGAGC GGAGTTGCCG chr2L:19138423-19138543 101 7.67e-06 AATTATTCGT TGGGCAGC AAATGCGTTT chr3L:16871026-16871146 33 9.86e-06 TGTCCAAAGT TGTGGTGG CGCGAAGTGA chrX:15297339-15297459 108 9.86e-06 TGACCGCAAG TGTGGTGG CCAAG chr3L:19263483-19263603 20 1.43e-05 TCCAAAGCGT TGTGGTGC GCCCGCTTTT chr3L:908658-908778 41 1.95e-05 ATAAGGACAA TGTGCTGC TCAGATTTCC chr2R:8045066-8045186 48 2.63e-05 TTAGTTAGCA TGGGCTTG CATAAATTAT chrX:10184767-10184887 2 2.63e-05 G TGGGCTTG AGTGCGATAC chr3L:14847513-14847633 45 2.63e-05 TAAAGATAGT TGGGCTTG AAAATAAAAT chr2R:13008228-13008348 22 3.45e-05 GCCGCCAGTG TCGGCTGC ACTGTAAACA chr2R:10681351-10681471 43 3.89e-05 TATAACTCGT TGGGGTGA GTTACTCAGA chr3L:11556793-11556913 98 3.89e-05 TTAAATAGTT TGGGTTGG CTTCTATATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21706588-21706708 2.4e-06 85_[+2]_27 chr3L:16840561-16840681 2.4e-06 50_[+2]_62 chrX:21375736-21375856 3.5e-06 11_[+2]_101 chr2R:15034896-15035016 4.1e-06 25_[+2]_87 chr3L:9126083-9126203 4.1e-06 5_[+2]_107 chr2L:16690120-16690240 6.9e-06 81_[+2]_31 chr3L:16129035-16129155 6.9e-06 8_[+2]_104 chr2L:19138423-19138543 7.7e-06 100_[+2]_12 chr3L:16871026-16871146 9.9e-06 32_[+2]_80 chrX:15297339-15297459 9.9e-06 107_[+2]_5 chr3L:19263483-19263603 1.4e-05 19_[+2]_93 chr3L:908658-908778 1.9e-05 40_[+2]_72 chr2R:8045066-8045186 2.6e-05 47_[+2]_65 chrX:10184767-10184887 2.6e-05 1_[+2]_111 chr3L:14847513-14847633 2.6e-05 44_[+2]_68 chr2R:13008228-13008348 3.4e-05 21_[+2]_91 chr2R:10681351-10681471 3.9e-05 42_[+2]_70 chr3L:11556793-11556913 3.9e-05 97_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGSTGS width=8 seqs=18 chr2R:21706588-21706708 ( 86) TGGGGTGC 1 chr3L:16840561-16840681 ( 51) TGGGGTGC 1 chrX:21375736-21375856 ( 12) TGGGGGGG 1 chr2R:15034896-15035016 ( 26) TGGGCGGG 1 chr3L:9126083-9126203 ( 6) TGGGGGGC 1 chr2L:16690120-16690240 ( 82) TGGGCAGG 1 chr3L:16129035-16129155 ( 9) TGGGGAGC 1 chr2L:19138423-19138543 ( 101) TGGGCAGC 1 chr3L:16871026-16871146 ( 33) TGTGGTGG 1 chrX:15297339-15297459 ( 108) TGTGGTGG 1 chr3L:19263483-19263603 ( 20) TGTGGTGC 1 chr3L:908658-908778 ( 41) TGTGCTGC 1 chr2R:8045066-8045186 ( 48) TGGGCTTG 1 chrX:10184767-10184887 ( 2) TGGGCTTG 1 chr3L:14847513-14847633 ( 45) TGGGCTTG 1 chr2R:13008228-13008348 ( 22) TCGGCTGC 1 chr2R:10681351-10681471 ( 43) TGGGGTGA 1 chr3L:11556793-11556913 ( 98) TGGGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 8.5e+000 -1081 -1081 -1081 145 -1081 -127 281 -1081 -1081 -1081 253 -72 -1081 -1081 289 -1081 -1081 172 189 -272 -113 -1081 30 86 -1081 -1081 263 -114 -271 172 189 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 8.5e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.500000 0.055556 0.166667 0.000000 0.166667 0.666667 0.000000 0.000000 0.833333 0.166667 0.055556 0.444444 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGSTGS MEME-2 regular expression -------------------------------------------------------------------------------- TG[GT]G[GC]TG[GC] -------------------------------------------------------------------------------- Time 13.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCWCGSC MEME-3 width = 8 sites = 4 llr = 55 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C ::a:a:5a probability G aa:::a5: matrix T :::5:::: bits 2.9 *** ** * 2.6 *** ** * 2.3 *** ** * 2.0 *** **** Relative 1.7 *** **** Entropy 1.4 *** **** (19.7 bits) 1.2 *** **** 0.9 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCACGCC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21706388-21706508 52 1.19e-06 TAAGATATGT GGCACGCC TGAGATACAA chr2L:19121249-19121369 46 1.19e-06 tgggtatatc ggctcggc taatgatATT chrX:5970354-5970474 10 1.19e-06 AACAACAAC GGCACGGC GGACATGGGC chr3R:24093572-24093692 72 1.19e-06 AAAATCTAGG GGCTCGCC AAAACAGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21706388-21706508 1.2e-06 51_[+3]_61 chr2L:19121249-19121369 1.2e-06 45_[+3]_67 chrX:5970354-5970474 1.2e-06 9_[+3]_103 chr3R:24093572-24093692 1.2e-06 71_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCWCGSC width=8 seqs=4 chr2R:21706388-21706508 ( 52) GGCACGCC 1 chr2L:19121249-19121369 ( 46) GGCTCGGC 1 chrX:5970354-5970474 ( 10) GGCACGGC 1 chr3R:24093572-24093692 ( 72) GGCTCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 2.4e+002 -865 -865 289 -865 -865 -865 289 -865 -865 289 -865 -865 46 -865 -865 45 -865 289 -865 -865 -865 -865 289 -865 -865 189 189 -865 -865 289 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.4e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWCGSC MEME-3 regular expression -------------------------------------------------------------------------------- GGC[AT]CG[CG]C -------------------------------------------------------------------------------- Time 20.11 secs. ******************************************************************************** ******************************************************************************** MOTIF STSACCGC MEME-4 width = 8 sites = 5 llr = 62 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C 4:4:aa:a probability G 6:62::a: matrix T :a:::::: bits 2.9 **** 2.6 **** 2.3 **** 2.0 * * **** Relative 1.7 * * **** Entropy 1.4 *** **** (17.9 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGACCGC consensus C CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15297339-15297459 97 8.06e-07 ATCTGTTTGT GTGACCGC AAGTGTGGTG chr3R:16210008-16210128 101 2.72e-06 TTTCGACTTG CTGACCGC ATCTTAGCCT chr3L:3970499-3970619 25 2.72e-06 TAAAAAATTA GTCACCGC AGCGTATTGA chr2R:23656753-23656873 77 2.72e-06 TCCTATTTTC CTGACCGC CACTGTGCGC chr2R:13008228-13008348 9 4.12e-06 AGCCCTTT GTCGCCGC CAGTGTCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15297339-15297459 8.1e-07 96_[+4]_16 chr3R:16210008-16210128 2.7e-06 100_[+4]_12 chr3L:3970499-3970619 2.7e-06 24_[+4]_88 chr2R:23656753-23656873 2.7e-06 76_[+4]_36 chr2R:13008228-13008348 4.1e-06 8_[+4]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STSACCGC width=8 seqs=5 chrX:15297339-15297459 ( 97) GTGACCGC 1 chr3R:16210008-16210128 ( 101) CTGACCGC 1 chr3L:3970499-3970619 ( 25) GTCACCGC 1 chr2R:23656753-23656873 ( 77) CTGACCGC 1 chr2R:13008228-13008348 ( 9) GTCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 3.0e+003 -897 157 215 -897 -897 -897 -897 145 -897 157 215 -897 113 -897 57 -897 -897 289 -897 -897 -897 289 -897 -897 -897 -897 289 -897 -897 289 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.0e+003 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.600000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSACCGC MEME-4 regular expression -------------------------------------------------------------------------------- [GC]T[GC][AG]CCGC -------------------------------------------------------------------------------- Time 26.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCCACC MEME-5 width = 8 sites = 2 llr = 28 E-value = 8.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::a:: pos.-specific C :::aa:aa probability G a:a::::: matrix T :::::::: bits 2.9 * *** ** 2.6 * *** ** 2.3 * *** ** 2.0 * *** ** Relative 1.7 * *** ** Entropy 1.4 ******** (20.3 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAGCCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15835719-15835839 11 8.02e-07 TGTTAAGAAT GAGCCACC TGATTTGAAA chrX:11081344-11081464 93 8.02e-07 CCTTAATCAT GAGCCACC CAACTTCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15835719-15835839 8e-07 10_[+5]_102 chrX:11081344-11081464 8e-07 92_[+5]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCCACC width=8 seqs=2 chr2R:15835719-15835839 ( 11) GAGCCACC 1 chrX:11081344-11081464 ( 93) GAGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.1e+003 -765 -765 288 -765 145 -765 -765 -765 -765 -765 288 -765 -765 289 -765 -765 -765 289 -765 -765 145 -765 -765 -765 -765 289 -765 -765 -765 289 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.1e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCACC MEME-5 regular expression -------------------------------------------------------------------------------- GAGCCACC -------------------------------------------------------------------------------- Time 32.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16215023-16215143 9.68e-01 120 chr3L:18030112-18030232 6.78e-01 120 chr3L:17447971-17448091 9.70e-01 120 chr3L:11863721-11863841 9.76e-01 120 chr2R:18374523-18374643 9.14e-01 120 chr3R:16213918-16214038 1.00e+00 120 chr3L:10827491-10827611 9.86e-01 120 chr2R:15155081-15155201 9.69e-01 120 chr3L:19231282-19231402 7.46e-02 120 chr2L:19019227-19019347 3.32e-02 120 chr2R:22508168-22508288 9.08e-01 120 chr3L:16870816-16870936 2.02e-01 108_[+5(3.44e-05)]_4 chr3L:11467171-11467291 9.86e-01 120 chr2R:6589468-6589588 1.82e-01 120 chr3L:14847513-14847633 1.84e-06 5_[+1(1.42e-06)]_31_[+2(2.63e-05)]_\ 68 chr3L:15034491-15034611 6.75e-01 120 chr3R:13804003-13804123 9.02e-01 120 chr3R:28959229-28959349 9.99e-01 120 chrX:18125680-18125800 3.57e-01 120 chr2L:9864440-9864560 2.51e-02 120 chr3R:6414859-6414979 1.00e+00 120 chr3L:11556793-11556913 7.98e-02 97_[+2(3.89e-05)]_15 chr3L:9466714-9466834 5.80e-01 120 chr2R:18374725-18374845 1.71e-01 120 chr3L:21859771-21859891 9.93e-01 120 chr3R:13804202-13804322 9.99e-02 120 chr2R:22053785-22053905 9.90e-01 120 chr3L:19087989-19088109 1.00e+00 120 chr3R:21188082-21188202 1.94e-02 120 chr2R:11176379-11176499 9.97e-01 120 chr3L:17948834-17948954 6.31e-01 120 chr3L:19251733-19251853 5.16e-01 120 chr2L:19019426-19019546 4.88e-02 120 chr2R:13015369-13015489 1.54e-01 120 chr2L:2374191-2374311 9.99e-01 120 chrX:13208235-13208355 9.63e-01 120 chr2L:17558244-17558364 4.44e-01 120 chr3R:20829582-20829702 9.73e-01 120 chr2R:8860057-8860177 4.13e-04 75_[+1(1.71e-06)]_37 chr3R:15366969-15367089 1.00e+00 120 chr3L:16840561-16840681 1.26e-02 50_[+2(2.43e-06)]_62 chrX:12547343-12547463 7.34e-01 120 chr3L:4000858-4000978 9.47e-01 120 chrX:9120072-9120192 3.65e-01 120 chr3L:9125875-9125995 9.95e-01 120 chrX:3206320-3206440 4.31e-05 18_[+1(5.20e-07)]_94 chr2R:24139223-24139343 3.84e-01 120 chr3R:14875740-14875860 1.61e-01 120 chr3L:14328440-14328560 3.41e-01 120 chr3R:17049080-17049200 9.98e-01 120 chr3L:11278931-11279051 9.55e-01 120 chr2L:20808451-20808571 2.57e-02 120 chrX:19248415-19248535 2.57e-01 120 chr3R:8577766-8577886 9.01e-01 120 chr2R:14698959-14699079 6.77e-01 120 chr3L:10818400-10818520 6.17e-01 120 chr3L:16148005-16148125 9.37e-01 120 chr3R:24580605-24580725 6.86e-01 120 chr2L:12567406-12567526 4.54e-01 120 chr3R:20950178-20950298 8.07e-01 120 chr3L:11336558-11336678 2.23e-01 120 chr2L:11248970-11249090 9.99e-01 120 chr2R:11758328-11758448 8.80e-01 120 chrX:9431555-9431675 4.47e-03 120 chr3L:4010200-4010320 6.89e-02 120 chr3L:7314304-7314424 5.03e-01 120 chr3R:26333408-26333528 5.54e-01 120 chr3R:16215222-16215342 3.73e-01 120 chrX:7995216-7995336 8.10e-01 120 chr2L:19138423-19138543 1.86e-02 100_[+2(7.67e-06)]_12 chr3R:21809104-21809224 1.00e+00 120 chr3L:15275588-15275708 4.52e-01 120 chr3R:6664785-6664905 5.37e-01 120 chr2L:16869118-16869238 1.00e+00 120 chr3L:16840760-16840880 3.59e-01 120 chr2L:3755291-3755411 8.99e-01 120 chr3L:7592269-7592389 6.00e-01 120 chr3L:9739773-9739893 5.77e-01 120 chr3L:6797568-6797688 7.58e-01 120 chrX:17712596-17712716 2.04e-01 120 chr3L:4353716-4353836 9.29e-02 120 chr3R:16242040-16242160 4.08e-01 120 chr3R:24093572-24093692 1.18e-03 71_[+3(1.19e-06)]_41 chr2L:12156938-12157058 9.33e-01 120 chr3R:24467417-24467537 9.42e-01 120 chr2R:22789437-22789557 3.92e-01 120 chr3L:6885824-6885944 9.00e-01 120 chr3L:2913438-2913558 8.60e-01 120 chr2L:1048502-1048622 9.26e-01 120 chr3R:11081844-11081964 9.95e-01 120 chr3L:9695730-9695850 2.67e-01 120 chr2L:7931383-7931503 9.78e-01 120 chr3R:12543094-12543214 4.26e-01 120 chr2R:16916249-16916369 9.80e-01 120 chrX:5970354-5970474 3.64e-05 9_[+3(1.19e-06)]_103 chr2L:12415871-12415991 4.84e-01 120 chrX:15297339-15297459 1.51e-05 96_[+4(8.06e-07)]_3_[+2(9.86e-06)]_\ 5 chr2R:11176586-11176706 2.68e-01 120 chr3R:16213018-16213138 3.91e-01 120 chr2L:17588733-17588853 4.88e-01 120 chr3L:9126083-9126203 4.44e-07 5_[+2(4.14e-06)]_40_[+1(4.23e-06)]_\ 41_[+2(5.91e-05)]_1_[+2(6.89e-05)]_1 chr2R:12991292-12991412 5.16e-01 120 chrX:9615585-9615705 9.68e-01 120 chr2R:8051542-8051662 8.16e-01 120 chr2R:23656753-23656873 4.14e-04 76_[+4(2.72e-06)]_36 chrX:16580060-16580180 2.78e-01 120 chr3R:5413123-5413243 5.45e-01 120 chrX:9520310-9520430 9.99e-01 120 chrX:16086355-16086475 3.49e-02 120 chr2R:14136883-14137003 9.29e-01 120 chr3R:6664985-6665105 7.24e-01 120 chr2L:3507610-3507730 9.95e-01 120 chr2L:1619341-1619461 8.83e-02 120 chr2L:14141368-14141488 8.06e-01 120 chr3L:16129035-16129155 5.99e-04 8_[+2(6.86e-06)]_104 chrX:10628983-10629103 9.99e-01 120 chr3L:16871026-16871146 1.20e-03 32_[+2(9.86e-06)]_38_[+2(3.45e-05)]_\ 34 chrX:19453270-19453390 5.00e-01 120 chr3L:18795562-18795682 5.00e-01 120 chr3R:21188281-21188401 5.82e-01 120 chr2R:18771134-18771254 9.90e-01 120 chrX:12937862-12937982 5.86e-01 120 chr2L:6088913-6089033 1.88e-01 120 chr3L:21321912-21322032 8.22e-01 120 chr3L:908658-908778 7.03e-04 40_[+2(1.95e-05)]_72 chr3R:18311339-18311459 1.00e+00 120 chrX:20644096-20644216 1.69e-01 120 chr2L:19121249-19121369 9.07e-04 45_[+3(1.19e-06)]_67 chr2L:7871879-7871999 4.49e-01 120 chr2L:13876837-13876957 3.39e-03 120 chr2L:19463546-19463666 9.65e-01 120 chr3L:6085274-6085394 9.65e-01 120 chr2R:24292808-24292928 7.57e-02 120 chrX:12724876-12724996 9.96e-01 120 chr2R:10194954-10195074 4.28e-01 120 chr3R:26117850-26117970 9.95e-01 120 chr3R:14351507-14351627 1.76e-01 120 chr3R:25184184-25184304 9.61e-01 120 chrX:11081344-11081464 3.38e-03 92_[+5(8.02e-07)]_20 chr3R:15128967-15129087 1.00e+00 120 chr2R:10395576-10395696 4.53e-01 120 chr3R:25168412-25168532 9.52e-01 120 chr3R:17526197-17526317 4.26e-01 120 chr2R:11232677-11232797 9.99e-01 120 chr3R:6760910-6761030 9.59e-01 120 chr3R:29651569-29651689 1.36e-03 1_[+1(1.42e-06)]_111 chr2L:10760755-10760875 9.73e-01 120 chrX:12925923-12926043 1.00e+00 120 chr2R:10681351-10681471 1.84e-01 42_[+2(3.89e-05)]_70 chrX:19225100-19225220 9.31e-01 120 chr2R:15835719-15835839 4.80e-03 10_[+5(8.02e-07)]_102 chr2L:19373932-19374052 7.79e-01 120 chr2R:14305293-14305413 7.35e-02 120 chr3R:26494364-26494484 9.99e-01 120 chr2L:13461055-13461175 5.93e-01 120 chr3L:3970499-3970619 2.12e-03 24_[+4(2.72e-06)]_88 chr2L:17588933-17589053 5.38e-01 120 chr2L:17747269-17747389 9.62e-01 120 chr2L:1043685-1043805 9.83e-03 120 chr3R:23067527-23067647 3.23e-01 120 chr2L:14123748-14123868 5.86e-01 120 chr3L:19263483-19263603 1.22e-07 19_[+2(1.43e-05)]_[+1(2.82e-06)]_85 chr3L:16045407-16045527 3.70e-01 120 chr2R:8002262-8002382 1.00e+00 120 chrX:15297121-15297241 9.69e-01 120 chr3L:16054175-16054295 8.40e-01 120 chr2R:12218896-12219016 8.47e-01 120 chr2R:11601979-11602099 1.00e+00 120 chr3R:16476580-16476700 9.99e-01 120 chr3R:7646412-7646532 7.47e-01 120 chrX:20434688-20434808 2.64e-01 120 chrX:17782142-17782262 6.84e-01 120 chr2R:13008228-13008348 2.45e-06 8_[+4(4.12e-06)]_5_[+2(3.45e-05)]_\ 91 chrX:10184767-10184887 1.21e-01 1_[+2(2.63e-05)]_111 chr2R:16096950-16097070 6.42e-01 120 chr3L:2845405-2845525 4.30e-02 120 chr3R:10140017-10140137 7.73e-01 120 chr3L:13903470-13903590 1.00e+00 120 chr2R:15835518-15835638 7.08e-01 120 chr3L:17310626-17310746 8.54e-01 120 chr3L:20276752-20276872 3.29e-02 120 chrX:19348902-19349022 1.54e-02 110_[+4(2.12e-05)]_2 chr2L:5445996-5446116 9.59e-01 120 chr2R:15034896-15035016 4.06e-04 25_[+2(4.14e-06)]_87 chrX:13320918-13321038 7.87e-01 120 chr3R:15250622-15250742 9.85e-01 120 chr2R:8045066-8045186 2.86e-02 47_[+2(2.63e-05)]_65 chr2R:9388643-9388763 3.65e-01 120 chr3R:7821739-7821859 1.01e-01 120 chr3R:27988693-27988813 5.42e-03 23_[+3(5.07e-05)]_89 chrX:10573675-10573795 5.76e-02 120 chr3R:21206414-21206534 9.64e-01 120 chr3L:14613888-14614008 1.98e-01 120 chr2L:19930229-19930349 6.20e-01 120 chr3L:14172624-14172744 4.45e-01 120 chr2L:8080770-8080890 5.01e-01 120 chr3L:734026-734146 1.24e-01 120 chr2R:21706588-21706708 7.29e-04 4_[+2(4.47e-05)]_73_[+2(2.43e-06)]_\ 27 chr2R:9684090-9684210 9.06e-01 120 chr2L:1207574-1207694 2.57e-01 120 chr3L:5182339-5182459 7.63e-01 120 chr3R:9494411-9494531 7.07e-01 120 chr3L:11291588-11291708 5.93e-01 120 chr2L:6874667-6874787 3.39e-01 120 chrX:3289066-3289186 8.10e-01 120 chr2R:12547680-12547800 8.74e-01 120 chr3R:13799672-13799792 6.91e-01 120 chr2L:7957183-7957303 9.68e-01 120 chr3R:17680980-17681100 9.48e-01 120 chr3R:15129169-15129289 6.90e-02 120 chrX:10363021-10363141 9.41e-01 120 chr3R:16986963-16987083 1.50e-01 120 chr3L:3411873-3411993 6.29e-01 120 chr3L:8951148-8951268 8.77e-01 120 chrX:21375736-21375856 1.88e-02 11_[+2(3.54e-06)]_101 chr2L:16647859-16647979 6.17e-01 120 chr3R:14278286-14278406 2.81e-01 120 chr2L:6830438-6830558 4.25e-01 120 chrX:9899908-9900028 9.71e-01 120 chr3L:5630254-5630374 9.76e-01 120 chr3L:19073974-19074094 9.16e-01 120 chrX:13789098-13789218 2.64e-01 120 chr3R:25880526-25880646 2.33e-04 89_[+1(5.20e-07)]_23 chr3R:29581610-29581730 3.66e-01 120 chr2R:12772774-12772894 8.91e-01 120 chr3L:18402691-18402811 9.74e-01 120 chr3R:18197702-18197822 7.21e-02 120 chrX:18900058-18900178 6.37e-01 120 chr3L:3873222-3873342 9.98e-01 120 chr2R:21706388-21706508 1.41e-04 51_[+3(1.19e-06)]_61 chr2R:8734578-8734698 5.67e-01 120 chr3L:10893441-10893561 5.98e-02 120 chrX:2011732-2011852 7.72e-01 120 chr3L:11398763-11398883 9.69e-01 120 chrX:20631263-20631383 2.76e-01 120 chrX:9202306-9202426 5.98e-02 120 chr3R:6368617-6368737 9.43e-01 120 chr3L:16172917-16173037 8.44e-01 120 chr3L:7155752-7155872 7.25e-01 120 chr2L:8746425-8746545 7.17e-01 120 chr2L:14021274-14021394 4.24e-01 120 chr3R:24574234-24574354 1.00e+00 120 chr3R:5861714-5861834 1.05e-01 120 chr3R:22878561-22878681 8.62e-01 120 chr2L:8602709-8602829 2.53e-01 120 chr2L:16690120-16690240 4.47e-03 81_[+2(6.86e-06)]_31 chrX:9135233-9135353 9.92e-01 120 chr2L:15442303-15442423 8.30e-01 120 chr3R:16210008-16210128 2.68e-04 100_[+4(2.72e-06)]_12 chr3L:3437263-3437383 1.00e+00 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************